AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101440 MtrunA17_Chr1g0154621 99.558 226 1 0 1 226 1 226 8.59e-168 461
Msa0101440 MtrunA17_Chr3g0141391 83.190 232 32 4 1 226 1 231 1.67e-135 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101440 AT1G19330.2 76.856 229 48 4 1 226 1 227 1.07e-110 318
Msa0101440 AT1G19330.3 71.489 235 56 6 1 226 1 233 4.81e-109 313
Msa0101440 AT1G19330.1 75.641 234 47 5 1 226 1 232 8.96e-109 313
Msa0101440 AT1G75060.1 69.907 216 61 4 11 223 17 231 5.04e-100 290
Msa0101440 AT1G75060.2 69.444 216 61 5 11 223 17 230 3.66e-98 286
Msa0101440 AT1G75060.3 69.143 175 50 4 11 182 17 190 3.85e-73 221

Find 89 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACCAAAGTTGTTGTTAC+TGG 0.247333 1_3:-8080785 Msa0101440:CDS
GAAGGTTGACTTGAGCAAAT+TGG 0.273443 1_3:-8079460 Msa0101440:CDS
CCTAATGATCTAAGCATTCT+TGG 0.306623 1_3:+8079672 None:intergenic
CATCTGGCATGGATCAGATA+TGG 0.313436 1_3:-8079825 Msa0101440:CDS
AGCTGCTCTTTCGATGGGTT+TGG 0.323968 1_3:+8079305 None:intergenic
CCAAGAATGCTTAGATCATT+AGG 0.330483 1_3:-8079672 Msa0101440:CDS
GATGAGTTGCAAGTTATTAG+AGG 0.336175 1_3:-8078758 Msa0101440:CDS
ACCTTGTGACTTGAATCTTC+AGG 0.374486 1_3:-8078480 Msa0101440:three_prime_UTR
CATTACTAAGTAGTATCTTT+CGG 0.377739 1_3:-8078587 Msa0101440:three_prime_UTR
TTGGTCTTGGTGGTTGGCAT+TGG 0.389653 1_3:-8080706 Msa0101440:CDS
TCTTGGTGGTTGGCATTGGC+TGG 0.391104 1_3:-8080702 Msa0101440:intron
CTCTGTTGATTCACAGTCCA+AGG 0.394816 1_3:-8079619 Msa0101440:CDS
GAGGAGTGGTGGGTGGATAG+AGG 0.395109 1_3:+8081051 None:intergenic
TGTCTGCATTGTGGAGATAT+TGG 0.404430 1_3:-8079434 Msa0101440:CDS
TGAATTGTGTAGTGTGGAAT+TGG 0.405778 1_3:-8078335 Msa0101440:three_prime_UTR
TGGAAATAACCGTACTAAAT+CGG 0.406762 1_3:-8080765 Msa0101440:CDS
TCGGTTCTTGTTGGTCTTCG+TGG 0.407495 1_3:-8080746 Msa0101440:CDS
TCAAAGCTGCAAAGAGGCTT+AGG 0.412016 1_3:-8078730 Msa0101440:CDS
TTAGTAGTAGGTTGATTAAG+AGG 0.413082 1_3:-8078557 Msa0101440:three_prime_UTR
GGGGTCAATTTCTATGCCTC+AGG 0.418506 1_3:-8079598 Msa0101440:CDS
GTTAAGAAAGCTGTTGGTCT+TGG 0.432909 1_3:-8080719 Msa0101440:CDS
TTCGGATCTCAATTAGTAGT+AGG 0.443097 1_3:-8078569 Msa0101440:three_prime_UTR
AGAGAATGAAGAGGAGTGGT+GGG 0.448953 1_3:+8081041 None:intergenic
CCTTGTGACTTGAATCTTCA+GGG 0.452656 1_3:-8078479 Msa0101440:three_prime_UTR
ATTGAAAATGTTGGAAGCAA+TGG 0.458146 1_3:-8080894 Msa0101440:exon
ATTTCCAGTAACAACAACTT+TGG 0.459498 1_3:+8080781 None:intergenic
CGTACTAAATCGGTTCTTGT+TGG 0.461204 1_3:-8080755 Msa0101440:CDS
AAGAAAGCTGTTGGTCTTGG+TGG 0.462904 1_3:-8080716 Msa0101440:CDS
CTTGCTGCTCACATGGGAAG+TGG 0.465516 1_3:-8078418 Msa0101440:three_prime_UTR
AAGAGAATGAAGAGGAGTGG+TGG 0.470329 1_3:+8081040 None:intergenic
CATTCTTGGCCTTGATCTGT+AGG 0.480531 1_3:+8079686 None:intergenic
TTGAATTTGAAAATACCATC+TGG 0.487944 1_3:-8079841 Msa0101440:CDS
CAGCTTCACTTCAATACCAT+TGG 0.494520 1_3:+8079922 None:intergenic
AGGCATAGAAATTGACCCCT+TGG 0.495573 1_3:+8079602 None:intergenic
TAATGTACTTGCTGCTCACA+TGG 0.497237 1_3:-8078425 Msa0101440:three_prime_UTR
CTACGAGCTGCTCTTTCGAT+GGG 0.498457 1_3:+8079300 None:intergenic
GTCATCGTCTTCCTCGAGAC+CGG 0.501405 1_3:+8079865 None:intergenic
TCTACGAGCTGCTCTTTCGA+TGG 0.503645 1_3:+8079299 None:intergenic
TCTGTTGATTCACAGTCCAA+GGG 0.503809 1_3:-8079618 Msa0101440:CDS
CACAAAAGTCCTACAGATCA+AGG 0.510418 1_3:-8079695 Msa0101440:CDS
ATCTGGCATGGATCAGATAT+GGG 0.529761 1_3:-8079824 Msa0101440:intron
TTCTATGCCTCAGGGGTGGA+CGG 0.534012 1_3:-8079589 Msa0101440:intron
TTGGTTTGTGCATCGACGCA+TGG 0.534807 1_3:-8078316 Msa0101440:three_prime_UTR
TTGCTGCTCACATGGGAAGT+GGG 0.537063 1_3:-8078417 Msa0101440:three_prime_UTR
AGTGTGATTGAACCACCAAC+CGG 0.537912 1_3:-8079884 Msa0101440:CDS
ATATGAATATCCACTTCCCT+TGG 0.541035 1_3:-8078629 Msa0101440:three_prime_UTR
TTACATGGTACCAAGGGAAG+TGG 0.541130 1_3:+8078619 None:intergenic
GAATGAAGAGGAGTGGTGGG+TGG 0.541696 1_3:+8081044 None:intergenic
ATAGATCGAAACTGTGATCA+TGG 0.542305 1_3:+8080967 None:intergenic
GATCATTAGGATCATCTCAC+AGG 0.547105 1_3:-8079659 Msa0101440:CDS
TCAGAGGCATTTCATGTCGC+AGG 0.548273 1_3:-8079270 Msa0101440:intron
AAGCTGCAAAGAGGCTTAGG+AGG 0.549495 1_3:-8078727 Msa0101440:CDS
ACATTATAATCAAAAGCTAA+AGG 0.551860 1_3:+8078442 None:intergenic
TTTGAAAATACCATCTGGCA+TGG 0.557029 1_3:-8079836 Msa0101440:CDS
CAACAAGAACCGATTTAGTA+CGG 0.559704 1_3:+8080756 None:intergenic
CCCTGAAGATTCAAGTCACA+AGG 0.563556 1_3:+8078479 None:intergenic
ATATTGGCGACACTTCAATC+TGG 0.569350 1_3:-8079418 Msa0101440:intron
AAGCTGTTGGTCTTGGTGGT+TGG 0.570137 1_3:-8080712 Msa0101440:CDS
AATGTGCAGGTTCTTACCAA+TGG 0.571599 1_3:-8079938 Msa0101440:intron
GAGAGAGAAAGAGAATGAAG+AGG 0.571656 1_3:+8081032 None:intergenic
TCTTCCTCGAGACCGGTTGG+TGG 0.579056 1_3:+8079872 None:intergenic
GCAATGGAAAGTTCAGTGAA+TGG 0.583506 1_3:-8080878 Msa0101440:CDS
AGAAAGAGAATGAAGAGGAG+TGG 0.587556 1_3:+8081037 None:intergenic
GGGTCAATTTCTATGCCTCA+GGG 0.589986 1_3:-8079597 Msa0101440:CDS
CATATCTGATCCATGCCAGA+TGG 0.593266 1_3:+8079826 None:intergenic
AAATATATTACATGGTACCA+AGG 0.594090 1_3:+8078612 None:intergenic
GGTGTTGTTAAGAAAGCTGT+TGG 0.600631 1_3:-8080725 Msa0101440:CDS
TCGTCTTCCTCGAGACCGGT+TGG 0.600634 1_3:+8079869 None:intergenic
CAATTTCTATGCCTCAGGGG+TGG 0.610942 1_3:-8079593 Msa0101440:CDS
TAGTGATGATCATGCATTGA+GGG 0.612578 1_3:+8080990 None:intergenic
TGAACCACCAACCGGTCTCG+AGG 0.615263 1_3:-8079876 Msa0101440:CDS
CATGAATGAATTGTGTAGTG+TGG 0.619979 1_3:-8078341 Msa0101440:three_prime_UTR
GTATTGAAGTGAAGCTGCAG+AGG 0.621922 1_3:-8079916 Msa0101440:CDS
TTCATTCATGAGAATAAACA+AGG 0.622932 1_3:+8078354 None:intergenic
AATATATTACATGGTACCAA+GGG 0.622945 1_3:+8078613 None:intergenic
GGACTGTGAATCAACAGAGA+AGG 0.625537 1_3:+8079623 None:intergenic
GATTTGTCAAAGCTGCAAAG+AGG 0.634961 1_3:-8078736 Msa0101440:CDS
GTAATGCTAAATATATTACA+TGG 0.637984 1_3:+8078604 None:intergenic
ATGGAAAGTTCAGTGAATGG+TGG 0.641018 1_3:-8080875 Msa0101440:CDS
AATGTACTTGCTGCTCACAT+GGG 0.650448 1_3:-8078424 Msa0101440:three_prime_UTR
AGCTCGTAGATGTTGTTCAG+AGG 0.657397 1_3:-8079286 Msa0101440:CDS
AATTGGAAATGTCTGCATTG+TGG 0.659073 1_3:-8079443 Msa0101440:CDS
TATACACATTCACAAGTCTG+AGG 0.678875 1_3:+8078391 None:intergenic
GTTAGTGAGAGACAGTGCAG+AGG 0.678948 1_3:+8081093 None:intergenic
CTGTTGATTCACAGTCCAAG+GGG 0.680824 1_3:-8079617 Msa0101440:CDS
ACAACAACTTTGGTATGACG+AGG 0.693978 1_3:+8080791 None:intergenic
ATATATACCGTCCACCCCTG+AGG 0.713549 1_3:+8079582 None:intergenic
GGTCAATTTCTATGCCTCAG+GGG 0.731555 1_3:-8079596 Msa0101440:CDS
GTAGTGATGATCATGCATTG+AGG 0.753546 1_3:+8080989 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTATCATCAAAAT+TGG - chr1_3:8078741-8078760 Msa0101440:CDS 10.0%
!!! AATTATACATTTTTAAGTAT+TGG - chr1_3:8078932-8078951 Msa0101440:intron 10.0%
!!! ATTATACATTTTTAAGTATT+GGG - chr1_3:8078933-8078952 Msa0101440:intron 10.0%
!!! AGTTTTTTTCATATTTTATT+TGG - chr1_3:8079333-8079352 Msa0101440:intron 10.0%
!!! TTTGAAAATATTTAATTTTG+AGG + chr1_3:8080457-8080476 None:intergenic 10.0%
!!! CAAAATTAAATATTTTCAAA+TGG - chr1_3:8080457-8080476 Msa0101440:intron 10.0%
!! AAAAAAAATCAAAACTTTGA+AGG + chr1_3:8078474-8078493 None:intergenic 15.0%
!! TAGGAAAATTTGAATAAAAT+TGG + chr1_3:8079194-8079213 None:intergenic 15.0%
!!! AGATTTTTACTCTTTAAAAT+AGG + chr1_3:8079213-8079232 None:intergenic 15.0%
!!! TTTTCATTGATTGAAAATGT+TGG - chr1_3:8078497-8078516 Msa0101440:three_prime_UTR 20.0%
!! TATTGTTGTGGAAAAAAAAT+TGG - chr1_3:8078957-8078976 Msa0101440:intron 20.0%
!!! TGGAAAAAAAATTGGATTTT+TGG - chr1_3:8078965-8078984 Msa0101440:intron 20.0%
!!! TTTGGTTTTTGTAATTTGAA+TGG - chr1_3:8078983-8079002 Msa0101440:intron 20.0%
!! AATGGAGCTTAATTTATTTA+TGG - chr1_3:8079001-8079020 Msa0101440:intron 20.0%
!! TAAGCTTAAACATCAAAATT+GGG - chr1_3:8080053-8080072 Msa0101440:intron 20.0%
!!! TTCAGTAAATTCTTTTACTA+GGG + chr1_3:8080432-8080451 None:intergenic 20.0%
!!! ATTCAGTAAATTCTTTTACT+AGG + chr1_3:8080433-8080452 None:intergenic 20.0%
!! GTAATGCTAAATATATTACA+TGG + chr1_3:8080799-8080818 None:intergenic 20.0%
!! ACATTATAATCAAAAGCTAA+AGG + chr1_3:8080961-8080980 None:intergenic 20.0%
! TTCAATTGCTCAATTCATTT+GGG - chr1_3:8078900-8078919 Msa0101440:intron 25.0%
! GCTTAATTTATTTATGGATC+TGG - chr1_3:8079007-8079026 Msa0101440:intron 25.0%
!! TGCTTGATTTTGAATTTTGA+TGG - chr1_3:8079068-8079087 Msa0101440:intron 25.0%
!!! TTTTGAATTTTGATGGTCAA+TGG - chr1_3:8079075-8079094 Msa0101440:intron 25.0%
!! AGATGGTATTTTCAAATTCA+AGG + chr1_3:8079560-8079579 None:intergenic 25.0%
! TTGAATTTGAAAATACCATC+TGG - chr1_3:8079559-8079578 Msa0101440:intron 25.0%
! TATTGAAAATATCGTGTAGA+AGG - chr1_3:8079922-8079941 Msa0101440:CDS 25.0%
!!! GTTATTTGACGTATCTTTTT+TGG - chr1_3:8080012-8080031 Msa0101440:intron 25.0%
! GTAAGCTTAAACATCAAAAT+TGG - chr1_3:8080052-8080071 Msa0101440:intron 25.0%
!! TCAGTAAATTCTTTTACTAG+GGG + chr1_3:8080431-8080450 None:intergenic 25.0%
!!! TGTTTTGTTTATGAAGCAAA+TGG - chr1_3:8080620-8080639 Msa0101440:intron 25.0%
! AATATATTACATGGTACCAA+GGG + chr1_3:8080790-8080809 None:intergenic 25.0%
! AAATATATTACATGGTACCA+AGG + chr1_3:8080791-8080810 None:intergenic 25.0%
! CATTACTAAGTAGTATCTTT+CGG - chr1_3:8080813-8080832 Msa0101440:CDS 25.0%
! TTCATTCATGAGAATAAACA+AGG + chr1_3:8081049-8081068 None:intergenic 25.0%
ATTGAAAATGTTGGAAGCAA+TGG - chr1_3:8078506-8078525 Msa0101440:three_prime_UTR 30.0%
!! CAACATTTTCAAAGCTTTGT+TGG - chr1_3:8078555-8078574 Msa0101440:three_prime_UTR 30.0%
ATTTCCAGTAACAACAACTT+TGG + chr1_3:8078622-8078641 None:intergenic 30.0%
TGGAAATAACCGTACTAAAT+CGG - chr1_3:8078635-8078654 Msa0101440:three_prime_UTR 30.0%
CTTCAATTGCTCAATTCATT+TGG - chr1_3:8078899-8078918 Msa0101440:intron 30.0%
!! TAAGTATTGGGTTATTGTTG+TGG - chr1_3:8078945-8078964 Msa0101440:intron 30.0%
TCATACAATTGTTGCATGTA+TGG - chr1_3:8079415-8079434 Msa0101440:intron 30.0%
TTGTTTCATGAAAAATGTGC+AGG - chr1_3:8079449-8079468 Msa0101440:CDS 30.0%
ATATGGGTGAGTTTCAATTT+GGG - chr1_3:8079592-8079611 Msa0101440:CDS 30.0%
GGTACATTATTGTTTGCATT+AGG - chr1_3:8080151-8080170 Msa0101440:intron 30.0%
GTTCCTGTAACAATGTTATT+TGG - chr1_3:8080206-8080225 Msa0101440:intron 30.0%
CAACCAAATAACATTGTTAC+AGG + chr1_3:8080212-8080231 None:intergenic 30.0%
! AGTAAATTCTTTTACTAGGG+GGG + chr1_3:8080429-8080448 None:intergenic 30.0%
! CAGTAAATTCTTTTACTAGG+GGG + chr1_3:8080430-8080449 None:intergenic 30.0%
!! TTAGTAGTAGGTTGATTAAG+AGG - chr1_3:8080843-8080862 Msa0101440:CDS 30.0%
!! CACCTAGTTTTTATGTAGAT+AGG - chr1_3:8080895-8080914 Msa0101440:exon 30.0%
AGCCTATCTACATAAAAACT+AGG + chr1_3:8080900-8080919 None:intergenic 30.0%
AGGAGAGAGAGAAGAAAAAT+GGG + chr1_3:8078332-8078351 None:intergenic 35.0%
TAGTGATGATCATGCATTGA+GGG + chr1_3:8078413-8078432 None:intergenic 35.0%
ATAGATCGAAACTGTGATCA+TGG + chr1_3:8078436-8078455 None:intergenic 35.0%
! CATACCAAAGTTGTTGTTAC+TGG - chr1_3:8078615-8078634 Msa0101440:three_prime_UTR 35.0%
! CAACAAGAACCGATTTAGTA+CGG + chr1_3:8078647-8078666 None:intergenic 35.0%
!! GATCTTTGCAACTCACTTTT+TGG - chr1_3:8079110-8079129 Msa0101440:intron 35.0%
!!! TGCAACTCACTTTTTGGTTT+TGG - chr1_3:8079116-8079135 Msa0101440:intron 35.0%
TTTGAAAATACCATCTGGCA+TGG - chr1_3:8079564-8079583 Msa0101440:intron 35.0%
GATATGGGTGAGTTTCAATT+TGG - chr1_3:8079591-8079610 Msa0101440:CDS 35.0%
CACAAACAAAATCAGCAATC+GGG + chr1_3:8079655-8079674 None:intergenic 35.0%
GCACAAACAAAATCAGCAAT+CGG + chr1_3:8079656-8079675 None:intergenic 35.0%
CCTAATGATCTAAGCATTCT+TGG + chr1_3:8079731-8079750 None:intergenic 35.0%
CCAAGAATGCTTAGATCATT+AGG - chr1_3:8079728-8079747 Msa0101440:intron 35.0%
AATTGGAAATGTCTGCATTG+TGG - chr1_3:8079957-8079976 Msa0101440:intron 35.0%
AACATCAAAATTGGGTATGC+AGG - chr1_3:8080061-8080080 Msa0101440:intron 35.0%
ATTTGGTTGAACACTGTATG+TGG - chr1_3:8080223-8080242 Msa0101440:intron 35.0%
TATGTGGTTCCAATCAGATT+TGG - chr1_3:8080239-8080258 Msa0101440:intron 35.0%
GATGAGTTGCAAGTTATTAG+AGG - chr1_3:8080642-8080661 Msa0101440:intron 35.0%
ATATGAATATCCACTTCCCT+TGG - chr1_3:8080771-8080790 Msa0101440:CDS 35.0%
TTCGGATCTCAATTAGTAGT+AGG - chr1_3:8080831-8080850 Msa0101440:CDS 35.0%
! GAATCTTCAGGGAAGTTTTA+AGG - chr1_3:8080932-8080951 Msa0101440:five_prime_UTR 35.0%
TATACACATTCACAAGTCTG+AGG + chr1_3:8081012-8081031 None:intergenic 35.0%
CATGAATGAATTGTGTAGTG+TGG - chr1_3:8081059-8081078 Msa0101440:five_prime_UTR 35.0%
TGAATTGTGTAGTGTGGAAT+TGG - chr1_3:8081065-8081084 Msa0101440:five_prime_UTR 35.0%
GAGGAGAGAGAGAAGAAAAA+TGG + chr1_3:8078333-8078352 None:intergenic 40.0%
AGAAAGAGAATGAAGAGGAG+TGG + chr1_3:8078366-8078385 None:intergenic 40.0%
GAGAGAGAAAGAGAATGAAG+AGG + chr1_3:8078371-8078390 None:intergenic 40.0%
GTAGTGATGATCATGCATTG+AGG + chr1_3:8078414-8078433 None:intergenic 40.0%
GCAATGGAAAGTTCAGTGAA+TGG - chr1_3:8078522-8078541 Msa0101440:three_prime_UTR 40.0%
ATGGAAAGTTCAGTGAATGG+TGG - chr1_3:8078525-8078544 Msa0101440:three_prime_UTR 40.0%
ACAACAACTTTGGTATGACG+AGG + chr1_3:8078612-8078631 None:intergenic 40.0%
! CGTACTAAATCGGTTCTTGT+TGG - chr1_3:8078645-8078664 Msa0101440:three_prime_UTR 40.0%
!! GGTGTTGTTAAGAAAGCTGT+TGG - chr1_3:8078675-8078694 Msa0101440:three_prime_UTR 40.0%
! GTTAAGAAAGCTGTTGGTCT+TGG - chr1_3:8078681-8078700 Msa0101440:three_prime_UTR 40.0%
AATGTGCAGGTTCTTACCAA+TGG - chr1_3:8079462-8079481 Msa0101440:CDS 40.0%
CAGCTTCACTTCAATACCAT+TGG + chr1_3:8079481-8079500 None:intergenic 40.0%
ATCTGGCATGGATCAGATAT+GGG - chr1_3:8079576-8079595 Msa0101440:intron 40.0%
CAGCAATCGGGAAAATCAAA+AGG + chr1_3:8079643-8079662 None:intergenic 40.0%
CACAAAAGTCCTACAGATCA+AGG - chr1_3:8079705-8079724 Msa0101440:CDS 40.0%
GATCATTAGGATCATCTCAC+AGG - chr1_3:8079741-8079760 Msa0101440:intron 40.0%
!! TCTGTTGATTCACAGTCCAA+GGG - chr1_3:8079782-8079801 Msa0101440:intron 40.0%
!! GAAGGTTGACTTGAGCAAAT+TGG - chr1_3:8079940-8079959 Msa0101440:intron 40.0%
TGTCTGCATTGTGGAGATAT+TGG - chr1_3:8079966-8079985 Msa0101440:intron 40.0%
ATATTGGCGACACTTCAATC+TGG - chr1_3:8079982-8080001 Msa0101440:intron 40.0%
ATCAAAATTGGGTATGCAGG+TGG - chr1_3:8080064-8080083 Msa0101440:intron 40.0%
ACGAGGAATCCAAATCTGAT+TGG + chr1_3:8080251-8080270 None:intergenic 40.0%
AATCAGATTTGGATTCCTCG+TGG - chr1_3:8080250-8080269 Msa0101440:intron 40.0%
CATTCACAAAGTCGACACAT+TGG - chr1_3:8080287-8080306 Msa0101440:intron 40.0%
GATTTGTCAAAGCTGCAAAG+AGG - chr1_3:8080664-8080683 Msa0101440:intron 40.0%
ACCTTGTGACTTGAATCTTC+AGG - chr1_3:8080920-8080939 Msa0101440:five_prime_UTR 40.0%
CCTTGTGACTTGAATCTTCA+GGG - chr1_3:8080921-8080940 Msa0101440:five_prime_UTR 40.0%
! TAATGTACTTGCTGCTCACA+TGG - chr1_3:8080975-8080994 Msa0101440:five_prime_UTR 40.0%
! AATGTACTTGCTGCTCACAT+GGG - chr1_3:8080976-8080995 Msa0101440:five_prime_UTR 40.0%
AGAGAATGAAGAGGAGTGGT+GGG + chr1_3:8078362-8078381 None:intergenic 45.0%
AAGAGAATGAAGAGGAGTGG+TGG + chr1_3:8078363-8078382 None:intergenic 45.0%
!! AAGAAAGCTGTTGGTCTTGG+TGG - chr1_3:8078684-8078703 Msa0101440:three_prime_UTR 45.0%
GTATTGAAGTGAAGCTGCAG+AGG - chr1_3:8079484-8079503 Msa0101440:intron 45.0%
AGTGTGATTGAACCACCAAC+CGG - chr1_3:8079516-8079535 Msa0101440:intron 45.0%
CATATCTGATCCATGCCAGA+TGG + chr1_3:8079577-8079596 None:intergenic 45.0%
CATCTGGCATGGATCAGATA+TGG - chr1_3:8079575-8079594 Msa0101440:intron 45.0%
!! CATTCTTGGCCTTGATCTGT+AGG + chr1_3:8079717-8079736 None:intergenic 45.0%
GGACTGTGAATCAACAGAGA+AGG + chr1_3:8079780-8079799 None:intergenic 45.0%
!! CTCTGTTGATTCACAGTCCA+AGG - chr1_3:8079781-8079800 Msa0101440:intron 45.0%
!! CTGTTGATTCACAGTCCAAG+GGG - chr1_3:8079783-8079802 Msa0101440:intron 45.0%
AGGCATAGAAATTGACCCCT+TGG + chr1_3:8079801-8079820 None:intergenic 45.0%
GGGTCAATTTCTATGCCTCA+GGG - chr1_3:8079803-8079822 Msa0101440:intron 45.0%
GGTCAATTTCTATGCCTCAG+GGG - chr1_3:8079804-8079823 Msa0101440:intron 45.0%
!!! CTTTTTTGGTTGCTGTTGCG+TGG - chr1_3:8080026-8080045 Msa0101440:intron 45.0%
AGCTCGTAGATGTTGTTCAG+AGG - chr1_3:8080114-8080133 Msa0101440:intron 45.0%
! GTGTGTAATTTGTGACCACG+AGG + chr1_3:8080268-8080287 None:intergenic 45.0%
TCGACACATTGGTGAACCTT+TGG - chr1_3:8080298-8080317 Msa0101440:intron 45.0%
GCAAAATGCGAGCAAACCAA+AGG + chr1_3:8080317-8080336 None:intergenic 45.0%
ATCAGCACATCAGTGATTGC+TGG + chr1_3:8080357-8080376 None:intergenic 45.0%
! TCTTTTACTAGGGGGGAGAT+TGG + chr1_3:8080422-8080441 None:intergenic 45.0%
TCAAAGCTGCAAAGAGGCTT+AGG - chr1_3:8080670-8080689 Msa0101440:intron 45.0%
TTACATGGTACCAAGGGAAG+TGG + chr1_3:8080784-8080803 None:intergenic 45.0%
CCCTGAAGATTCAAGTCACA+AGG + chr1_3:8080924-8080943 None:intergenic 45.0%
GTTAGTGAGAGACAGTGCAG+AGG + chr1_3:8078310-8078329 None:intergenic 50.0%
!! TCGGTTCTTGTTGGTCTTCG+TGG - chr1_3:8078654-8078673 Msa0101440:three_prime_UTR 50.0%
!! AAGCTGTTGGTCTTGGTGGT+TGG - chr1_3:8078688-8078707 Msa0101440:three_prime_UTR 50.0%
!! TTGGTCTTGGTGGTTGGCAT+TGG - chr1_3:8078694-8078713 Msa0101440:exon 50.0%
GGGGTCAATTTCTATGCCTC+AGG - chr1_3:8079802-8079821 Msa0101440:intron 50.0%
CAATTTCTATGCCTCAGGGG+TGG - chr1_3:8079807-8079826 Msa0101440:intron 50.0%
ATATATACCGTCCACCCCTG+AGG + chr1_3:8079821-8079840 None:intergenic 50.0%
! AGCTGCTCTTTCGATGGGTT+TGG + chr1_3:8080098-8080117 None:intergenic 50.0%
CTACGAGCTGCTCTTTCGAT+GGG + chr1_3:8080103-8080122 None:intergenic 50.0%
TCTACGAGCTGCTCTTTCGA+TGG + chr1_3:8080104-8080123 None:intergenic 50.0%
!! TCAGAGGCATTTCATGTCGC+AGG - chr1_3:8080130-8080149 Msa0101440:intron 50.0%
CTGCATGAGATTGTGTCTGC+AGG - chr1_3:8080381-8080400 Msa0101440:intron 50.0%
! GGGGGAGATTGGAATGGATT+TGG + chr1_3:8080411-8080430 None:intergenic 50.0%
TACTAGGGGGGAGATTGGAA+TGG + chr1_3:8080417-8080436 None:intergenic 50.0%
AAGCTGCAAAGAGGCTTAGG+AGG - chr1_3:8080673-8080692 Msa0101440:intron 50.0%
TTGCTGCTCACATGGGAAGT+GGG - chr1_3:8080983-8081002 Msa0101440:five_prime_UTR 50.0%
!! TTGGTTTGTGCATCGACGCA+TGG - chr1_3:8081084-8081103 Msa0101440:five_prime_UTR 50.0%
! GAATGAAGAGGAGTGGTGGG+TGG + chr1_3:8078359-8078378 None:intergenic 55.0%
!! TCTTGGTGGTTGGCATTGGC+TGG - chr1_3:8078698-8078717 Msa0101440:exon 55.0%
GTCATCGTCTTCCTCGAGAC+CGG + chr1_3:8079538-8079557 None:intergenic 55.0%
TTCTATGCCTCAGGGGTGGA+CGG - chr1_3:8079811-8079830 Msa0101440:intron 55.0%
CTTGCTGCTCACATGGGAAG+TGG - chr1_3:8080982-8081001 Msa0101440:five_prime_UTR 55.0%
!! GAGGAGTGGTGGGTGGATAG+AGG + chr1_3:8078352-8078371 None:intergenic 60.0%
TGAACCACCAACCGGTCTCG+AGG - chr1_3:8079524-8079543 Msa0101440:intron 60.0%
TCTTCCTCGAGACCGGTTGG+TGG + chr1_3:8079531-8079550 None:intergenic 60.0%
TCGTCTTCCTCGAGACCGGT+TGG + chr1_3:8079534-8079553 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8078305 8081117 8078305 ID=Msa0101440;Name=Msa0101440
chr1_3 mRNA 8078305 8081117 8078305 ID=Msa0101440-mRNA-1;Parent=Msa0101440;Name=Msa0101440-mRNA-1;_AED=0.16;_eAED=0.16;_QI=208|1|1|1|1|1|6|407|226
chr1_3 exon 8078305 8078786 8078305 ID=Msa0101440-mRNA-1:exon:3203;Parent=Msa0101440-mRNA-1
chr1_3 exon 8079271 8079339 8079271 ID=Msa0101440-mRNA-1:exon:3202;Parent=Msa0101440-mRNA-1
chr1_3 exon 8079419 8079481 8079419 ID=Msa0101440-mRNA-1:exon:3201;Parent=Msa0101440-mRNA-1
chr1_3 exon 8079590 8079729 8079590 ID=Msa0101440-mRNA-1:exon:3200;Parent=Msa0101440-mRNA-1
chr1_3 exon 8079825 8079951 8079825 ID=Msa0101440-mRNA-1:exon:3199;Parent=Msa0101440-mRNA-1
chr1_3 exon 8080703 8081117 8080703 ID=Msa0101440-mRNA-1:exon:3198;Parent=Msa0101440-mRNA-1
chr1_3 five_prime_UTR 8080910 8081117 8080910 ID=Msa0101440-mRNA-1:five_prime_utr;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8080703 8080909 8080703 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8079825 8079951 8079825 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8079590 8079729 8079590 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8079419 8079481 8079419 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8079271 8079339 8079271 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 CDS 8078712 8078786 8078712 ID=Msa0101440-mRNA-1:cds;Parent=Msa0101440-mRNA-1
chr1_3 three_prime_UTR 8078305 8078711 8078305 ID=Msa0101440-mRNA-1:three_prime_utr;Parent=Msa0101440-mRNA-1
Gene Sequence

>Msa0101440

ATGTTGGAAGCAATGGAAAGTTCAGTGAATGGTGGATTTTCACAACATTTTCAAAGCTTTGTTGGAGATAGTAGTGAAGAAGAACTTTCTGTGCTTCCTCGTCATACCAAAGTTGTTGTTACTGGAAATAACCGTACTAAATCGGTTCTTGTTGGTCTTCGTGGTGTTGTTAAGAAAGCTGTTGGTCTTGGTGGTTGGCATTGGCTGGTTCTTACCAATGGTATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAACCACCAACCGGTCTCGAGGAAGACGATGACCTTGAATTTGAAAATACCATCTGGCATGGATCAGATATGGCATCAGATGACACACAAAAGTCCTACAGATCAAGGCCAAGAATGCTTAGATCATTAGGATCATCTCACAGGAGCATGAGCAGATCCTTCTCTGTTGATTCACAGTCCAAGGGGTCAATTTCTATGCCTCAGGGGTGGACGAAGGTTGACTTGAGCAAATTGGAAATGTCTGCATTGTGGAGATATTGGCGACACTTCAATCTGGTGGATGCTGTTCCAAACCCATCGAAAGAGCAGCTCGTAGATGTTGTTCAGAGGCATTTCATGTCGCAGCAAATGGATGAGTTGCAAGTTATTAGAGGATTTGTCAAAGCTGCAAAGAGGCTTAGGAGGACTATGTGCAAATGA

Protein sequence

>Msa0101440

MLEAMESSVNGGFSQHFQSFVGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLRGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEPPTGLEEDDDLEFENTIWHGSDMASDDTQKSYRSRPRMLRSLGSSHRSMSRSFSVDSQSKGSISMPQGWTKVDLSKLEMSALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIRGFVKAAKRLRRTMCK*