AlfalfaGEDB | Msa0507220

M. sativa cultivar zhongmu-4 / Msa0507220

KEGG: -
GO: GO:0000271 GO:0001871 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009507 GO:0009532 GO:0009536 GO:0009569 GO:0009570 GO:0009889 GO:0009987 GO:0010556 GO:0010581 GO:0010675 GO:0010962 GO:0016051 GO:0019222 GO:0019252 GO:0030246 GO:0030247 GO:0031323 GO:0031326 GO:0032881 GO:0032885 GO:0033692 GO:0034637 GO:0034645 GO:0043036 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901576 GO:2000112 GO:2000904 GO:2001070
PFAM: PF16561.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507220	XP_013460584.1	96.667	300	10	0	1	300	1	300	0.0	607

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507220	sp\|Q94AX2\|PTST_ARATH	69.903	206	62	0	95	300	72	277	6.12e-102	302

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507220	A0A072UZP8	96.667	300	10	0	1	300	1	300	0.0	607

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0170580	Msa0507220	0.801165	1.024072e-48	-8.615850e-47
Msa0265820	Msa0507220	0.805024	1.629870e-49	-8.615850e-47
Msa0507220	Msa0542010	0.802158	6.405996e-49	-8.615850e-47
Msa0507220	Msa0549740	0.809517	1.819356e-50	-8.615850e-47
Msa0507220	Msa0697540	0.808887	2.483480e-50	-8.615850e-47
Msa0507220	Msa0723140	0.800826	1.200947e-48	-8.615850e-47
Msa0507220	Msa0814780	0.810385	1.183177e-50	-8.615850e-47
Msa0507220	Msa0951720	0.809856	1.538985e-50	-8.615850e-47
Msa0507220	Msa1076680	0.800468	1.420778e-48	-8.615850e-47
Msa0507220	Msa1167000	0.805274	1.444637e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507220	MtrunA17_Chr3g0110931	96.667	300	10	0	1	300	1	300	0.0	607
Msa0507220	MtrunA17_Chr5g0415861	29.048	210	128	5	96	299	327	521	5.23e-13	69.3
Msa0507220	MtrunA17_Chr1g0180511	31.336	217	107	10	103	300	428	621	1.08e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507220	AT5G39790.3	68.421	209	63	1	95	300	72	280	6.51e-101	297
Msa0507220	AT5G39790.1	69.417	206	59	1	95	300	72	273	2.73e-100	295
Msa0507220	AT5G39790.2	65.385	104	32	1	95	198	72	171	1.48e-36	130
Msa0507220	AT1G27070.1	40.244	82	46	1	218	299	453	531	4.16e-13	69.7

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Find 67 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTAATGTTATTTGT+TGG	0.393350	3_4:-54490687	None:intergenic
AAACAGCCTTCTTCGATACA+CGG	0.639672	3_4:+54488233	None:intergenic
AAATCGGTTCCTCAAAAGAC+AGG	0.547441	3_4:-54487225	Msa0507220:intron
AATATACAGGTTCATACACA+AGG	0.697559	3_4:-54484797	Msa0507220:CDS
AATCACAAATCTTCCTTATA+AGG	0.163315	3_4:-54484499	Msa0507220:three_prime_UTR
AATTCTTAGTAGATGGTGAA+TGG	0.533430	3_4:-54484641	Msa0507220:CDS
ACAACATTGATGCTTAGGCC+AGG	0.585747	3_4:-54484768	Msa0507220:CDS
ACAACCACATACCAGTGAAC+AGG	0.496412	3_4:-54488094	Msa0507220:intron
ACAATTGAATGAGCAAATAA+AGG	0.305608	3_4:-54485816	Msa0507220:CDS
AGAACACAATCTATGCAAAC+TGG	0.480155	3_4:-54488204	Msa0507220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAATATCAGAGAGAGT+TGG	-	chr3_4:54484701-54484720	Msa0507220:intron	30.0%
TGAAAATATCAGAGAGAGTT+GGG	-	chr3_4:54484702-54484721	Msa0507220:intron	30.0%
AAGTAAACTTTCTTAGGCTT+TGG	-	chr3_4:54484939-54484958	Msa0507220:intron	30.0%
AGTAAACTTTCTTAGGCTTT+GGG	-	chr3_4:54484940-54484959	Msa0507220:intron	30.0%
AGAAATTCGGAAAGATTTAG+AGG	-	chr3_4:54485034-54485053	Msa0507220:intron	30.0%
AGATTTAGAGGTTAATGAGT+TGG	-	chr3_4:54485046-54485065	Msa0507220:intron	30.0%
AATAAATCGGTCATCTTTGT+TGG	+	chr3_4:54485461-54485480	None:intergenic	30.0%
AGAATTGGAAGGAAATGTAA+TGG	-	chr3_4:54485547-54485566	Msa0507220:intron	30.0%
TAAATCTTGTCGCAATTGTA+TGG	-	chr3_4:54485626-54485645	Msa0507220:intron	30.0%
AGTTTAATGGTTATAGGAGA+TGG	+	chr3_4:54485762-54485781	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	54484383	54490701	54484383	ID=Msa0507220;Name=Msa0507220
chr3_4	mRNA	54484383	54490701	54484383	ID=Msa0507220-mRNA-1;Parent=Msa0507220;Name=Msa0507220-mRNA-1;_AED=0.12;_eAED=0.12;_QI=85\|1\|1\|1\|0.87\|0.77\|9\|189\|300
chr3_4	exon	54484383	54484674	54484383	ID=Msa0507220-mRNA-1:exon:12065;Parent=Msa0507220-mRNA-1
chr3_4	exon	54484765	54484877	54484765	ID=Msa0507220-mRNA-1:exon:12064;Parent=Msa0507220-mRNA-1
chr3_4	exon	54485760	54485848	54485760	ID=Msa0507220-mRNA-1:exon:12063;Parent=Msa0507220-mRNA-1
chr3_4	exon	54486024	54486129	54486024	ID=Msa0507220-mRNA-1:exon:12062;Parent=Msa0507220-mRNA-1
chr3_4	exon	54486258	54486326	54486258	ID=Msa0507220-mRNA-1:exon:12061;Parent=Msa0507220-mRNA-1
chr3_4	exon	54487226	54487315	54487226	ID=Msa0507220-mRNA-1:exon:12060;Parent=Msa0507220-mRNA-1
chr3_4	exon	54488095	54488404	54488095	ID=Msa0507220-mRNA-1:exon:12059;Parent=Msa0507220-mRNA-1
chr3_4	exon	54488512	54488552	54488512	ID=Msa0507220-mRNA-1:exon:12058;Parent=Msa0507220-mRNA-1
chr3_4	exon	54490635	54490701	54490635	ID=Msa0507220-mRNA-1:exon:12057;Parent=Msa0507220-mRNA-1
chr3_4	five_prime_UTR	54490635	54490701	54490635	ID=Msa0507220-mRNA-1:five_prime_utr;Parent=Msa0507220-mRNA-1
chr3_4	five_prime_UTR	54488535	54488552	54488535	ID=Msa0507220-mRNA-1:five_prime_utr;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54488512	54488534	54488512	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54488095	54488404	54488095	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54487226	54487315	54487226	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54486258	54486326	54486258	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54486024	54486129	54486024	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54485760	54485848	54485760	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54484765	54484877	54484765	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	CDS	54484572	54484674	54484572	ID=Msa0507220-mRNA-1:cds;Parent=Msa0507220-mRNA-1
chr3_4	three_prime_UTR	54484383	54484571	54484383	ID=Msa0507220-mRNA-1:three_prime_utr;Parent=Msa0507220-mRNA-1

Gene Sequence

>Msa0507220

ATGATGGAAATAAGTATTGCAAGGTGTCATCTAGAAGCTCAGGGGATATTCTTTTCTAACATTTTGAGAACAATTGGAAGGGAAAATTCTCAGAAACTTCCATGTAATGTTGCGTCCCTGAATTCTAGACGGGACCTCCACAGATTAGCCTCTTCCTATCAAACTCTTACTGCCGTGTATCGAAGAAGGCTGTTTTTCTGTAGAACACAATCTATGCAAACTGGTTTAGAAGAATATGCATCATTACAATCCAGAGATAATCCTAACAACGATATTAATCCATCTGTAGACTCGGAAGACGAGATCTTGTCACAACCACATACCAGTGAACAGATAAAGGCACTGCTTGCTGATACTGAAAGAGCAAAACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAAGATGCGTTGGTAAAGTTTAAAAGTGAACTTGCTGTCTTAGAGCTCGAAGTTCAGGCTTTGGCCAGACTAGCAGAAGAAATAGCTAAATCTGGTATTCCAGAAGGTTCAAGGAAGATCAACGGAAAGTACATTCATACTCACCTTGTTACTAGATTAAAAGCTGTACACAAACAATTGAATGAGCAAATAAAGGGTGTTGATGCGGCACAATCAAAGGAGGTAGCCGTATTTTGGGTCGGCATGGCTGAGAGTGTGCAAGTTATGGGCAGCTTTGATGGTTGGAGTCAAGGAGAGCATCTTTCACCAGAATATACAGGTTCATACACAAGGTTCTCAACAACATTGATGCTTAGGCCAGGAAGGTATGAAATCAAATTCTTAGTAGATGGTGAATGGCACCTATCAACAGAGTTACCTGTTACTGGTGAAGGGTTAACGAAAAATAATTTGTTAATTGTTGAGTGA

Protein sequence

>Msa0507220

MMEISIARCHLEAQGIFFSNILRTIGRENSQKLPCNVASLNSRRDLHRLASSYQTLTAVYRRRLFFCRTQSMQTGLEEYASLQSRDNPNNDINPSVDSEDEILSQPHTSEQIKALLADTERAKLTKKLSEANQQNRFLKRQLYIKEDALVKFKSELAVLELEVQALARLAEEIAKSGIPEGSRKINGKYIHTHLVTRLKAVHKQLNEQIKGVDAAQSKEVAVFWVGMAESVQVMGSFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGEWHLSTELPVTGEGLTKNNLLIVE*