AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076680 MtrunA17_Chr7g0260731 95.307 277 2 1 91 367 1 266 0.0 539
Msa1076680 MtrunA17_Chr1g0187901 69.231 403 100 8 1 392 1 390 5.51e-169 478
Msa1076680 MtrunA17_Chr1g0165841 55.733 375 133 6 25 392 19 367 1.12e-133 387
Msa1076680 MtrunA17_Chr8g0380621 43.627 408 195 7 1 392 34 422 5.02e-104 313
Msa1076680 MtrunA17_Chr2g0333971 44.254 409 165 10 17 379 43 434 2.50e-97 297
Msa1076680 MtrunA17_Chr1g0165861 59.825 229 76 2 164 392 3 215 2.50e-93 279
Msa1076680 MtrunA17_Chr5g0393831 41.667 432 174 11 12 384 23 435 2.33e-92 284
Msa1076680 MtrunA17_Chr5g0419611 37.065 402 189 9 17 387 32 400 6.50e-77 243
Msa1076680 MtrunA17_Chr8g0384941 37.965 403 205 6 18 386 28 419 3.26e-76 242
Msa1076680 MtrunA17_Chr1g0206981 35.934 423 207 11 18 389 14 423 2.19e-72 232
Msa1076680 MtrunA17_Chr7g0260721 97.368 76 2 0 1 76 1 76 1.15e-44 149
Msa1076680 MtrunA17_Chr1g0187911 49.701 167 33 3 199 365 37 152 2.11e-43 148
Msa1076680 MtrunA17_Chr8g0385861 34.884 215 111 3 17 202 26 240 1.40e-35 130
Msa1076680 MtrunA17_Chr1g0165871 50.000 126 48 2 18 128 6 131 1.75e-28 109
Msa1076680 MtrunA17_Chr2g0307921 61.842 76 22 1 17 85 9 84 1.11e-20 86.3
Msa1076680 MtrunA17_Chr8g0385851 36.792 106 67 0 285 390 5 110 5.76e-18 79.0
Msa1076680 MtrunA17_Chr2g0307931 63.492 63 16 1 30 85 20 82 1.16e-16 75.1
Msa1076680 MtrunA17_Chr1g0176551 48.864 88 44 1 135 222 57 143 8.99e-16 77.0
Msa1076680 MtrunA17_Chr2g0320641 23.140 363 218 7 32 383 123 435 3.87e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076680 AT5G64560.1 69.767 387 94 6 18 392 19 394 3.66e-165 468
Msa1076680 AT5G09690.2 62.916 391 116 5 12 392 26 397 1.37e-163 464
Msa1076680 AT5G09690.1 62.916 391 116 5 12 392 15 386 1.78e-163 464
Msa1076680 AT5G64560.2 70.278 360 84 6 18 365 19 367 5.75e-153 437
Msa1076680 AT5G09690.12 63.462 364 104 5 12 365 26 370 3.00e-151 432
Msa1076680 AT5G09690.4 57.841 389 124 4 12 392 15 371 5.24e-143 411
Msa1076680 AT5G09690.9 62.577 326 93 5 12 327 15 321 8.26e-125 363
Msa1076680 AT5G09690.13 62.848 323 91 5 12 324 26 329 1.24e-124 363
Msa1076680 AT5G09690.7 62.654 324 92 5 12 325 15 319 1.25e-124 363
Msa1076680 AT5G09690.8 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1076680 AT5G09690.11 62.654 324 92 5 12 325 26 330 1.30e-124 363
Msa1076680 AT5G09690.3 62.848 323 91 5 12 324 15 318 2.04e-124 362
Msa1076680 AT1G16010.3 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1076680 AT1G16010.1 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1076680 AT1G16010.2 45.500 400 166 8 17 379 44 428 9.91e-102 308
Msa1076680 AT3G58970.1 43.970 398 184 8 17 392 56 436 4.66e-101 306
Msa1076680 AT5G09690.5 61.091 275 89 4 12 276 15 281 1.07e-98 295
Msa1076680 AT5G09690.14 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1076680 AT5G09690.10 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1076680 AT5G09690.6 61.091 275 89 4 12 276 26 292 1.50e-98 295
Msa1076680 AT1G80900.2 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1076680 AT1G80900.1 44.039 411 180 9 17 390 44 441 1.81e-98 300
Msa1076680 AT5G09720.1 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1076680 AT5G09720.2 55.319 282 101 8 23 291 18 287 8.21e-87 265
Msa1076680 AT3G19640.1 38.274 452 179 11 25 390 46 483 3.69e-84 265
Msa1076680 AT2G03620.1 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1076680 AT2G03620.2 38.272 405 186 7 17 387 42 416 2.12e-77 245
Msa1076680 AT4G28580.1 35.092 379 206 8 26 390 55 407 1.69e-67 219

Find 91 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACGCATATGTATTTAAA+TGG 0.188180 7_2:+75180399 Msa1076680:CDS
TCATTGGTAGCTGCAATATT+TGG 0.220816 7_2:+75180347 Msa1076680:CDS
TGACCTTCTTTCCATGTATA+TGG 0.239696 7_2:-75180380 None:intergenic
AAAAGATTTGATTACCTTAG+AGG 0.251185 7_2:-75178403 None:intergenic
GGCAATAGCTTGATTTATAA+TGG 0.283237 7_2:+75180919 Msa1076680:three_prime_UTR
TCATATCCTTCCACCATTCT+TGG 0.294400 7_2:+75177518 Msa1076680:CDS
ACAGATCAGCAGTCGTAATT+TGG 0.309187 7_2:+75178991 Msa1076680:intron
TCCATCAATTTGTATGAAAT+AGG 0.322286 7_2:-75179812 None:intergenic
CTCAAAGATCTTCTATATCT+TGG 0.328184 7_2:-75180849 None:intergenic
TCCATTTGAGTTTCGAGCTT+TGG 0.329463 7_2:+75178293 Msa1076680:CDS
TCACCGAAATCAACTGATTC+AGG 0.331607 7_2:+75180198 Msa1076680:CDS
GACTGCTGCTTATCCAGCTT+TGG 0.351888 7_2:+75178371 Msa1076680:CDS
ATACCTGAATCAGTTGATTT+CGG 0.353513 7_2:-75180201 None:intergenic
TGCAAGAGATCTTCGAATAA+TGG 0.360463 7_2:+75177484 Msa1076680:CDS
CCACTCAAGGTAAGTGTTGC+TGG 0.361150 7_2:+75177897 Msa1076680:CDS
GCCTATTTCATACAAATTGA+TGG 0.369964 7_2:+75179811 Msa1076680:CDS
CACATAACTCTTCTTCTACT+TGG 0.378469 7_2:-75177926 None:intergenic
GGTGAAGGTGGAGAAGAAAA+TGG 0.378750 7_2:+75177957 Msa1076680:CDS
GACTTTCTCTCTTCCAAGAA+TGG 0.389828 7_2:-75177531 None:intergenic
GCTCGACGCAAAGGTCTTGT+TGG 0.403901 7_2:+75180612 Msa1076680:CDS
TTTGGATGAACTAACCTCTA+AGG 0.407168 7_2:+75178389 Msa1076680:CDS
CTAGAGCTATTCCTAAGTTC+CGG 0.407596 7_2:+75180302 Msa1076680:CDS
TAGAGCTATTCCTAAGTTCC+GGG 0.413834 7_2:+75180303 Msa1076680:CDS
AAACTACTATTTCAAGAAGC+TGG 0.423267 7_2:+75177384 Msa1076680:CDS
TCGAGCTTTGGAAGTTGTAT+TGG 0.424295 7_2:+75178305 Msa1076680:CDS
GAAGATCGATGCACCTTGTT+GGG 0.427911 7_2:+75180649 Msa1076680:three_prime_UTR
TAAGTATGCTATTATGCGTT+TGG 0.428253 7_2:+75177451 Msa1076680:CDS
GGAAGTGCAGCAACACTTCA+AGG 0.431204 7_2:+75179497 Msa1076680:CDS
CTGTATGTTAATGTAATCTT+CGG 0.434923 7_2:-75179961 None:intergenic
TCCAAAGCTCGAAACTCAAA+TGG 0.437377 7_2:-75178294 None:intergenic
TTGTTTATCAATATATTCAT+TGG 0.442759 7_2:+75180331 Msa1076680:CDS
CTTCGTAGCTCTTCAACAAC+AGG 0.444279 7_2:-75177867 None:intergenic
ATATGGACTGTGATGCCAAT+TGG 0.456144 7_2:-75179444 None:intergenic
CTTTAGGTGGTGATTCTCAC+TGG 0.464038 7_2:+75180549 Msa1076680:intron
CTCGACGCAAAGGTCTTGTT+GGG 0.467590 7_2:+75180613 Msa1076680:CDS
GGTGGTGATTCTCACTGGAA+TGG 0.470474 7_2:+75180554 Msa1076680:intron
ATTCTCACTGGAATGGTTTG+TGG 0.471920 7_2:+75180561 Msa1076680:CDS
GTAGTTGCAATCAATTTATG+TGG 0.477882 7_2:+75180897 Msa1076680:three_prime_UTR
TCACGCATATGTATTTAAAT+GGG 0.487791 7_2:+75180400 Msa1076680:CDS
GTATGAACATTCCATATACA+TGG 0.489016 7_2:+75180369 Msa1076680:CDS
AGCTTTGGAAGTTGTATTGG+AGG 0.492401 7_2:+75178308 Msa1076680:CDS
AACAAACAGTCCCGGAACTT+AGG 0.497975 7_2:-75180313 None:intergenic
TATGGACTGTGATGCCAATT+GGG 0.507694 7_2:-75179443 None:intergenic
GTAGCTCTGATGGTCCCAAT+TGG 0.508984 7_2:+75179429 Msa1076680:CDS
TGAAGATCGATGCACCTTGT+TGG 0.509800 7_2:+75180648 Msa1076680:three_prime_UTR
ACTTTATTTATCAAGAAAGA+TGG 0.511194 7_2:+75179385 Msa1076680:CDS
CGAAGATTACATTAACATAC+AGG 0.512088 7_2:+75179962 Msa1076680:CDS
ATTCCATATACATGGAAAGA+AGG 0.515189 7_2:+75180377 Msa1076680:CDS
GAGGTTAGTTCATCCAAAGC+TGG 0.516706 7_2:-75178384 None:intergenic
GGCACAACATCATCATCCAT+TGG 0.518806 7_2:-75177846 None:intergenic
TCTCCCTCAAGTAGCTCTGA+TGG 0.520299 7_2:+75179419 Msa1076680:CDS
ATCAGAGCTACTTGAGGGAG+AGG 0.523362 7_2:-75179417 None:intergenic
GAAGAGTTATGTGTTCAAGA+AGG 0.534356 7_2:+75177936 Msa1076680:CDS
ATATCGTATGCTCGACGCAA+AGG 0.536903 7_2:+75180603 Msa1076680:CDS
GAAGTGCAGCAACACTTCAA+GGG 0.539485 7_2:+75179498 Msa1076680:CDS
GGACCATCAGAGCTACTTGA+GGG 0.540157 7_2:-75179422 None:intergenic
GCACAACATCATCATCCATT+GGG 0.541642 7_2:-75177845 None:intergenic
TAGAGATATAGTATTGGATG+TGG 0.546858 7_2:+75177427 Msa1076680:CDS
AAGGTAAGTGTTGCTGGTCA+AGG 0.546948 7_2:+75177903 Msa1076680:CDS
CCAGCAACACTTACCTTGAG+TGG 0.551535 7_2:-75177897 None:intergenic
TGATGCACGGACAAGAGAGT+TGG 0.552309 7_2:+75178347 Msa1076680:CDS
GGCTCTTGCTAGTTCTGAAG+TGG 0.556724 7_2:+75177331 Msa1076680:CDS
ACTCTCTTGTCCGTGCATCA+AGG 0.560525 7_2:-75178344 None:intergenic
TGTGTTCAAGAAGGTGAAGG+TGG 0.562146 7_2:+75177945 Msa1076680:CDS
TTTAGTTGCAAAATACAAAG+TGG 0.566853 7_2:+75181028 Msa1076680:three_prime_UTR
TGGCATCACAGTCCATATCA+AGG 0.568722 7_2:+75179449 Msa1076680:CDS
AGCTATAATCACTGCTGAAG+AGG 0.569524 7_2:+75177674 Msa1076680:CDS
TTTCTCTCTTCCAAGAATGG+TGG 0.573424 7_2:-75177528 None:intergenic
TTGTTGAAGAGCTACGAAGA+AGG 0.575051 7_2:+75177871 Msa1076680:CDS
TTTGTAGTTTCCTTGATGCA+CGG 0.575385 7_2:+75178334 Msa1076680:CDS
ACGAAGAAGGTTACCACTCA+AGG 0.578939 7_2:+75177884 Msa1076680:CDS
GGTATTGGTTAGAGACCCAA+TGG 0.587484 7_2:+75177830 Msa1076680:intron
TGAAGTTGTCTGATCAAGAT+CGG 0.589745 7_2:+75179677 Msa1076680:CDS
TAATTTCTTGTAGATAAGAG+AGG 0.596735 7_2:+75179322 Msa1076680:intron
TATTGATAAACAAACAGTCC+CGG 0.596765 7_2:-75180321 None:intergenic
TTATGTGTTCAAGAAGGTGA+AGG 0.608709 7_2:+75177942 Msa1076680:CDS
GTGGAAGGATATGAAAGAAG+AGG 0.608726 7_2:-75177509 None:intergenic
GTTGTCTGATCAAGATCGGA+CGG 0.610101 7_2:+75179681 Msa1076680:CDS
TCTCTTCCAAGAATGGTGGA+AGG 0.610885 7_2:-75177524 None:intergenic
TGATGGTAGAGATATAGTAT+TGG 0.611654 7_2:+75177421 Msa1076680:CDS
TAGTTGCAATCAATTTATGT+GGG 0.613032 7_2:+75180898 Msa1076680:three_prime_UTR
AAGTGCAGCAACACTTCAAG+GGG 0.628244 7_2:+75179499 Msa1076680:CDS
AGAGCTTGAGATGTTACTAG+AGG 0.632089 7_2:+75179535 Msa1076680:CDS
GATCGATGCACCTTGTTGGG+AGG 0.635193 7_2:+75180652 Msa1076680:three_prime_UTR
GGGACCATCAGAGCTACTTG+AGG 0.636715 7_2:-75179423 None:intergenic
GTTGACAAATCGTGTTCACA+AGG 0.641613 7_2:+75179048 Msa1076680:CDS
TATTCTGGTACCTCCCAACA+AGG 0.647291 7_2:-75180662 None:intergenic
AACATTAAATAAATTGACCA+CGG 0.651405 7_2:+75179834 Msa1076680:CDS
TAGGTGACGAGATGATGTCT+CGG 0.652438 7_2:+75180825 Msa1076680:intron
ATACTATATCTCTACCATCA+CGG 0.653488 7_2:-75177418 None:intergenic
AAAATACACAGATCAAGCAG+AGG 0.682981 7_2:+75179476 Msa1076680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTATTATCAT+TGG + chr7_2:75178163-75178182 Msa1076680:intron 10.0%
!! TATATAATATGAATATAGTA+AGG + chr7_2:75178796-75178815 Msa1076680:intron 10.0%
!!! AAATAACAAATAGATTTTTT+AGG + chr7_2:75179078-75179097 Msa1076680:intron 10.0%
!!! ATTCTGATTTTTATAATTTT+TGG + chr7_2:75180513-75180532 Msa1076680:intron 10.0%
!!! TTCTGATTTTTATAATTTTT+GGG + chr7_2:75180514-75180533 Msa1076680:intron 10.0%
!!! AATTATAGTATTGTTAATTT+TGG - chr7_2:75180742-75180761 None:intergenic 10.0%
!! ATAAAAAAGTCATAATTGTT+AGG - chr7_2:75178082-75178101 None:intergenic 15.0%
!!! TGTGTTGTTTTTAATAATAA+TGG + chr7_2:75178240-75178259 Msa1076680:intron 15.0%
!!! GTGTTGTTTTTAATAATAAT+GGG + chr7_2:75178241-75178260 Msa1076680:intron 15.0%
!! ATTAAACTAAAATTCAGTTA+AGG - chr7_2:75178533-75178552 None:intergenic 15.0%
!! TATACTAATAATAACAACAT+TGG + chr7_2:75178747-75178766 Msa1076680:intron 15.0%
!!! AATTAATCAGTATTTTTTTC+AGG - chr7_2:75178864-75178883 None:intergenic 15.0%
!!! AATACTGATTAATTAATGTT+TGG + chr7_2:75178870-75178889 Msa1076680:intron 15.0%
!! ATATTTGAATACATGAATTA+TGG - chr7_2:75180233-75180252 None:intergenic 15.0%
!! TTGTTTATCAATATATTCAT+TGG + chr7_2:75180331-75180350 Msa1076680:CDS 15.0%
!! CAAGTTATGGTTATATATAT+TGG - chr7_2:75177599-75177618 None:intergenic 20.0%
!! TAAAAATGATGAAGTGAAAA+TGG + chr7_2:75177775-75177794 Msa1076680:intron 20.0%
!!! GTTTGTTGTTGTTTTATTAT+AGG + chr7_2:75177809-75177828 Msa1076680:intron 20.0%
!!! TGTTGTTTTATTATAGGTAT+TGG + chr7_2:75177815-75177834 Msa1076680:intron 20.0%
!!! AAATGGTAAGCTTTTTTTTT+TGG + chr7_2:75177974-75177993 Msa1076680:intron 20.0%
!!! TTTTTATTAGATAGAACTTG+TGG + chr7_2:75178095-75178114 Msa1076680:intron 20.0%
!!! ACAATTATTTGTTAGACTTT+AGG - chr7_2:75178472-75178491 None:intergenic 20.0%
!! TTGTTAGTTAGAAATATACT+CGG + chr7_2:75178488-75178507 Msa1076680:intron 20.0%
!! AAACACAAAAAAATATCTCA+TGG - chr7_2:75178649-75178668 None:intergenic 20.0%
!!! TTTTTGTGTTTATATCCAAA+TGG + chr7_2:75178658-75178677 Msa1076680:intron 20.0%
!!! TATAGTAAGGTTTTTATCAT+TGG + chr7_2:75178809-75178828 Msa1076680:intron 20.0%
!! ACAACATGCATATATATTAT+AGG - chr7_2:75178901-75178920 None:intergenic 20.0%
!!! GGTAATTTTTTCTTTTCAAA+AGG + chr7_2:75179099-75179118 Msa1076680:intron 20.0%
!!! GTTTCTTAGTACATTTTATA+TGG - chr7_2:75179193-75179212 None:intergenic 20.0%
!! TATTAATCAAAGTAAGTTCT+TGG - chr7_2:75179299-75179318 None:intergenic 20.0%
!!! ACTTTATTTATCAAGAAAGA+TGG + chr7_2:75179385-75179404 Msa1076680:CDS 20.0%
!! ATAAATGAAAATCTCTCATT+TGG + chr7_2:75179641-75179660 Msa1076680:intron 20.0%
!! AACATTAAATAAATTGACCA+CGG + chr7_2:75179834-75179853 Msa1076680:CDS 20.0%
!! CTTACAAATTATTTACTACT+AGG + chr7_2:75180048-75180067 Msa1076680:intron 20.0%
!! ATATATCATGCACAATAATA+AGG - chr7_2:75180276-75180295 None:intergenic 20.0%
!! CAAAAACAGAATTCAAGTTA+TGG - chr7_2:75177612-75177631 None:intergenic 25.0%
! GTATAGAAACGAAATTACAA+TGG + chr7_2:75177996-75178015 Msa1076680:intron 25.0%
! TTGTGAGAAATACATTGTAT+CGG + chr7_2:75178135-75178154 Msa1076680:intron 25.0%
! AAAAGATTTGATTACCTTAG+AGG - chr7_2:75178406-75178425 None:intergenic 25.0%
! ATAAAGAAGATGTGATATGT+CGG - chr7_2:75178591-75178610 None:intergenic 25.0%
!! TAAGGTTTTTATCATTGGAA+AGG + chr7_2:75178814-75178833 Msa1076680:intron 25.0%
!! AAGGTTTTTATCATTGGAAA+GGG + chr7_2:75178815-75178834 Msa1076680:intron 25.0%
!! AATTAAAAAGTGCAATGACT+AGG + chr7_2:75179026-75179045 Msa1076680:CDS 25.0%
! CTTGGATATAAATATGTTGA+AGG - chr7_2:75179281-75179300 None:intergenic 25.0%
! TAATTTCTTGTAGATAAGAG+AGG + chr7_2:75179322-75179341 Msa1076680:intron 25.0%
!!! TGTATTTTTGAACCTTGATA+TGG - chr7_2:75179464-75179483 None:intergenic 25.0%
!!! CTAATTTCTATTGGTTTTTC+TGG - chr7_2:75179610-75179629 None:intergenic 25.0%
! TAGTAGTCTCTAATTTCTAT+TGG - chr7_2:75179619-75179638 None:intergenic 25.0%
! ATACATCATAAGCTAATTCA+TGG - chr7_2:75179764-75179783 None:intergenic 25.0%
! TCCATCAATTTGTATGAAAT+AGG - chr7_2:75179815-75179834 None:intergenic 25.0%
!! TGATTTCTGTTTTACACTTT+AGG + chr7_2:75179917-75179936 Msa1076680:intron 25.0%
! CTGTATGTTAATGTAATCTT+CGG - chr7_2:75179964-75179983 None:intergenic 25.0%
! TTAACATACAGGTAAGTTTA+AGG + chr7_2:75179973-75179992 Msa1076680:intron 25.0%
! TAACATACAGGTAAGTTTAA+GGG + chr7_2:75179974-75179993 Msa1076680:intron 25.0%
! CAAATTTGCACACTATATAT+TGG + chr7_2:75180107-75180126 Msa1076680:intron 25.0%
! TCACGCATATGTATTTAAAT+GGG + chr7_2:75180400-75180419 Msa1076680:CDS 25.0%
! ATTAGACAGAAAAAGAGAAT+CGG + chr7_2:75180477-75180496 Msa1076680:intron 25.0%
!!! ACACTTTTGACTTAATATTC+TGG - chr7_2:75180680-75180699 None:intergenic 25.0%
!! TAAGTCAAAAGTGTACATAA+AGG + chr7_2:75180686-75180705 Msa1076680:intron 25.0%
!! AAGTCAAAAGTGTACATAAA+GGG + chr7_2:75180687-75180706 Msa1076680:intron 25.0%
! TAGTTGCAATCAATTTATGT+GGG + chr7_2:75180898-75180917 Msa1076680:three_prime_UTR 25.0%
!!! AGTTGCAAAATTCACTTTTT+AGG + chr7_2:75180968-75180987 Msa1076680:three_prime_UTR 25.0%
!!! TCACTTTTTAGGTTTTATGA+AGG + chr7_2:75180979-75180998 Msa1076680:three_prime_UTR 25.0%
! TTTAGTTGCAAAATACAAAG+TGG + chr7_2:75181028-75181047 Msa1076680:three_prime_UTR 25.0%
AAACTACTATTTCAAGAAGC+TGG + chr7_2:75177384-75177403 Msa1076680:CDS 30.0%
ATACTATATCTCTACCATCA+CGG - chr7_2:75177421-75177440 None:intergenic 30.0%
TGATGGTAGAGATATAGTAT+TGG + chr7_2:75177421-75177440 Msa1076680:CDS 30.0%
! TAGAGATATAGTATTGGATG+TGG + chr7_2:75177427-75177446 Msa1076680:CDS 30.0%
TAAGTATGCTATTATGCGTT+TGG + chr7_2:75177451-75177470 Msa1076680:CDS 30.0%
TCTAGTGTTGTATAGTTTCA+TGG + chr7_2:75178191-75178210 Msa1076680:intron 30.0%
!! AATAATGGGAAATTGACTTG+TGG + chr7_2:75178255-75178274 Msa1076680:intron 30.0%
TCAGTTAAGGTTAGATTGTT+TGG - chr7_2:75178520-75178539 None:intergenic 30.0%
GTGTTTATATCCAAATGGTT+AGG + chr7_2:75178663-75178682 Msa1076680:intron 30.0%
TTATATCCAAATGGTTAGGA+TGG + chr7_2:75178667-75178686 Msa1076680:intron 30.0%
! AGGTTTTTATCATTGGAAAG+GGG + chr7_2:75178816-75178835 Msa1076680:intron 30.0%
TGCATGTTGTCACAAAATTA+TGG + chr7_2:75178911-75178930 Msa1076680:intron 30.0%
CGATTATTAAGGAGTAGAAA+GGG - chr7_2:75178945-75178964 None:intergenic 30.0%
ACGATTATTAAGGAGTAGAA+AGG - chr7_2:75178946-75178965 None:intergenic 30.0%
AACCAAAGTGACGATTATTA+AGG - chr7_2:75178956-75178975 None:intergenic 30.0%
!! AGACATTTAATTTGACGACT+AGG - chr7_2:75179125-75179144 None:intergenic 30.0%
CGTCAAATTAAATGTCTCAA+CGG + chr7_2:75179128-75179147 Msa1076680:intron 30.0%
! CTAATTCATGGAAATGGATT+AGG - chr7_2:75179752-75179771 None:intergenic 30.0%
CATAAGCTAATTCATGGAAA+TGG - chr7_2:75179758-75179777 None:intergenic 30.0%
GCCTATTTCATACAAATTGA+TGG + chr7_2:75179811-75179830 Msa1076680:CDS 30.0%
CGAAGATTACATTAACATAC+AGG + chr7_2:75179962-75179981 Msa1076680:CDS 30.0%
! CCATTTAAGTTAACTACTTC+CGG + chr7_2:75180082-75180101 Msa1076680:intron 30.0%
TATAGTGTGCAAATTTGAAC+CGG - chr7_2:75180104-75180123 None:intergenic 30.0%
! ATACCTGAATCAGTTGATTT+CGG - chr7_2:75180204-75180223 None:intergenic 30.0%
TATTGATAAACAAACAGTCC+CGG - chr7_2:75180324-75180343 None:intergenic 30.0%
GTATGAACATTCCATATACA+TGG + chr7_2:75180369-75180388 Msa1076680:CDS 30.0%
ATTCCATATACATGGAAAGA+AGG + chr7_2:75180377-75180396 Msa1076680:CDS 30.0%
GTCACGCATATGTATTTAAA+TGG + chr7_2:75180399-75180418 Msa1076680:CDS 30.0%
CGATATTATGGACAAAAAGA+AGG - chr7_2:75180589-75180608 None:intergenic 30.0%
!! TTGGTGCTATATATCGAAAT+TGG - chr7_2:75180723-75180742 None:intergenic 30.0%
CTCAAAGATCTTCTATATCT+TGG - chr7_2:75180852-75180871 None:intergenic 30.0%
GTAGTTGCAATCAATTTATG+TGG + chr7_2:75180897-75180916 Msa1076680:three_prime_UTR 30.0%
GGCAATAGCTTGATTTATAA+TGG + chr7_2:75180919-75180938 Msa1076680:three_prime_UTR 30.0%
TGCAAGAGATCTTCGAATAA+TGG + chr7_2:75177484-75177503 Msa1076680:CDS 35.0%
AGTCATTGTTCTCAATCTAG+AGG + chr7_2:75177550-75177569 Msa1076680:intron 35.0%
CACATAACTCTTCTTCTACT+TGG - chr7_2:75177929-75177948 None:intergenic 35.0%
GAAGAGTTATGTGTTCAAGA+AGG + chr7_2:75177936-75177955 Msa1076680:CDS 35.0%
TTATGTGTTCAAGAAGGTGA+AGG + chr7_2:75177942-75177961 Msa1076680:CDS 35.0%
TTTGTAGTTTCCTTGATGCA+CGG + chr7_2:75178334-75178353 Msa1076680:CDS 35.0%
TTTGGATGAACTAACCTCTA+AGG + chr7_2:75178389-75178408 Msa1076680:CDS 35.0%
CTCCTTAATAATCGTCACTT+TGG + chr7_2:75178951-75178970 Msa1076680:intron 35.0%
!!! TCTCAACGGTTTTTTACCAT+TGG + chr7_2:75179142-75179161 Msa1076680:intron 35.0%
ACCATTGGTACTGTATTACA+AGG + chr7_2:75179157-75179176 Msa1076680:intron 35.0%
ACCTTGTAATACAGTACCAA+TGG - chr7_2:75179161-75179180 None:intergenic 35.0%
TGTCATCATCATCATCAAGT+AGG - chr7_2:75179358-75179377 None:intergenic 35.0%
!! ACTTGATGATGATGATGACA+TGG + chr7_2:75179358-75179377 Msa1076680:CDS 35.0%
AAAATACACAGATCAAGCAG+AGG + chr7_2:75179476-75179495 Msa1076680:CDS 35.0%
TGAAGTTGTCTGATCAAGAT+CGG + chr7_2:75179677-75179696 Msa1076680:CDS 35.0%
TGAATAATGTCGTTCTTTGC+AGG + chr7_2:75179789-75179808 Msa1076680:intron 35.0%
TTAGTTCACTGTTATTACCG+TGG - chr7_2:75179854-75179873 None:intergenic 35.0%
CCGGAAGTAGTTAACTTAAA+TGG - chr7_2:75180085-75180104 None:intergenic 35.0%
! TCATTGGTAGCTGCAATATT+TGG + chr7_2:75180347-75180366 Msa1076680:CDS 35.0%
TGACCTTCTTTCCATGTATA+TGG - chr7_2:75180383-75180402 None:intergenic 35.0%
TGGGTTCAAATTGCATCTTT+AGG + chr7_2:75180533-75180552 Msa1076680:intron 35.0%
GTTCAAATTGCATCTTTAGG+TGG + chr7_2:75180536-75180555 Msa1076680:intron 35.0%
TGTACATAAAGGGAAATCCA+AGG + chr7_2:75180697-75180716 Msa1076680:intron 35.0%
! CTATATATCGAAATTGGCCT+TGG - chr7_2:75180717-75180736 None:intergenic 35.0%
GTGGAAGGATATGAAAGAAG+AGG - chr7_2:75177512-75177531 None:intergenic 40.0%
TCATATCCTTCCACCATTCT+TGG + chr7_2:75177518-75177537 Msa1076680:CDS 40.0%
TTTCTCTCTTCCAAGAATGG+TGG - chr7_2:75177531-75177550 None:intergenic 40.0%
GACTTTCTCTCTTCCAAGAA+TGG - chr7_2:75177534-75177553 None:intergenic 40.0%
AGCTATAATCACTGCTGAAG+AGG + chr7_2:75177674-75177693 Msa1076680:CDS 40.0%
GCACAACATCATCATCCATT+GGG - chr7_2:75177848-75177867 None:intergenic 40.0%
TTGTTGAAGAGCTACGAAGA+AGG + chr7_2:75177871-75177890 Msa1076680:CDS 40.0%
!! TTAGGTTGAATGCCGTAATC+AGG - chr7_2:75178064-75178083 None:intergenic 40.0%
!! AATGGGAAATTGACTTGTGG+TGG + chr7_2:75178258-75178277 Msa1076680:intron 40.0%
! TCCATTTGAGTTTCGAGCTT+TGG + chr7_2:75178293-75178312 Msa1076680:CDS 40.0%
TCCAAAGCTCGAAACTCAAA+TGG - chr7_2:75178297-75178316 None:intergenic 40.0%
!! TCGAGCTTTGGAAGTTGTAT+TGG + chr7_2:75178305-75178324 Msa1076680:CDS 40.0%
!! AGCTTTGGAAGTTGTATTGG+AGG + chr7_2:75178308-75178327 Msa1076680:CDS 40.0%
TATCCAAATGGTTAGGATGG+CGG + chr7_2:75178670-75178689 Msa1076680:intron 40.0%
ACAGATCAGCAGTCGTAATT+TGG + chr7_2:75178991-75179010 Msa1076680:intron 40.0%
GTTGACAAATCGTGTTCACA+AGG + chr7_2:75179048-75179067 Msa1076680:CDS 40.0%
! TATGGACTGTGATGCCAATT+GGG - chr7_2:75179446-75179465 None:intergenic 40.0%
! ATATGGACTGTGATGCCAAT+TGG - chr7_2:75179447-75179466 None:intergenic 40.0%
AGAGCTTGAGATGTTACTAG+AGG + chr7_2:75179535-75179554 Msa1076680:CDS 40.0%
! TCACCGAAATCAACTGATTC+AGG + chr7_2:75180198-75180217 Msa1076680:CDS 40.0%
CTAGAGCTATTCCTAAGTTC+CGG + chr7_2:75180302-75180321 Msa1076680:CDS 40.0%
TAGAGCTATTCCTAAGTTCC+GGG + chr7_2:75180303-75180322 Msa1076680:CDS 40.0%
AGACAGAAAAAGAGAATCGG+TGG + chr7_2:75180480-75180499 Msa1076680:intron 40.0%
GACAGAAAAAGAGAATCGGT+GGG + chr7_2:75180481-75180500 Msa1076680:intron 40.0%
ATTCTCACTGGAATGGTTTG+TGG + chr7_2:75180561-75180580 Msa1076680:CDS 40.0%
! TGGATTTTGCTAGACCGTGA+TGG + chr7_2:75177404-75177423 Msa1076680:CDS 45.0%
! TCTCTTCCAAGAATGGTGGA+AGG - chr7_2:75177527-75177546 None:intergenic 45.0%
!! GGTATTGGTTAGAGACCCAA+TGG + chr7_2:75177830-75177849 Msa1076680:intron 45.0%
GGCACAACATCATCATCCAT+TGG - chr7_2:75177849-75177868 None:intergenic 45.0%
CTTCGTAGCTCTTCAACAAC+AGG - chr7_2:75177870-75177889 None:intergenic 45.0%
ACGAAGAAGGTTACCACTCA+AGG + chr7_2:75177884-75177903 Msa1076680:CDS 45.0%
! AAGGTAAGTGTTGCTGGTCA+AGG + chr7_2:75177903-75177922 Msa1076680:CDS 45.0%
TGTGTTCAAGAAGGTGAAGG+TGG + chr7_2:75177945-75177964 Msa1076680:CDS 45.0%
GGTGAAGGTGGAGAAGAAAA+TGG + chr7_2:75177957-75177976 Msa1076680:CDS 45.0%
AGAAACTCACACACGAGTAG+AGG + chr7_2:75178024-75178043 Msa1076680:intron 45.0%
! GAGGTTAGTTCATCCAAAGC+TGG - chr7_2:75178387-75178406 None:intergenic 45.0%
GTCGGTGATATGATGAGAAG+AGG - chr7_2:75178573-75178592 None:intergenic 45.0%
TAAGGAGTAGAAAGGGACGA+GGG - chr7_2:75178938-75178957 None:intergenic 45.0%
TTAAGGAGTAGAAAGGGACG+AGG - chr7_2:75178939-75178958 None:intergenic 45.0%
TGGCATCACAGTCCATATCA+AGG + chr7_2:75179449-75179468 Msa1076680:CDS 45.0%
GAAGTGCAGCAACACTTCAA+GGG + chr7_2:75179498-75179517 Msa1076680:CDS 45.0%
AAGTGCAGCAACACTTCAAG+GGG + chr7_2:75179499-75179518 Msa1076680:CDS 45.0%
ATCTCTCATTTGGCGACAGT+CGG + chr7_2:75179651-75179670 Msa1076680:intron 45.0%
GTTGTCTGATCAAGATCGGA+CGG + chr7_2:75179681-75179700 Msa1076680:CDS 45.0%
AACAAACAGTCCCGGAACTT+AGG - chr7_2:75180316-75180335 None:intergenic 45.0%
CTTTAGGTGGTGATTCTCAC+TGG + chr7_2:75180549-75180568 Msa1076680:intron 45.0%
GCGTCGAGCATACGATATTA+TGG - chr7_2:75180601-75180620 None:intergenic 45.0%
ATATCGTATGCTCGACGCAA+AGG + chr7_2:75180603-75180622 Msa1076680:CDS 45.0%
TGAAGATCGATGCACCTTGT+TGG + chr7_2:75180648-75180667 Msa1076680:three_prime_UTR 45.0%
GAAGATCGATGCACCTTGTT+GGG + chr7_2:75180649-75180668 Msa1076680:three_prime_UTR 45.0%
TATTCTGGTACCTCCCAACA+AGG - chr7_2:75180665-75180684 None:intergenic 45.0%
TAGGTGACGAGATGATGTCT+CGG + chr7_2:75180825-75180844 Msa1076680:intron 45.0%
!!! TTTTTTCTTAAAAAAAAAAT+AGG + chr7_2:75180806-75180825 Msa1076680:intron 5.0%
!! GGCTCTTGCTAGTTCTGAAG+TGG + chr7_2:75177331-75177350 Msa1076680:CDS 50.0%
CCAGCAACACTTACCTTGAG+TGG - chr7_2:75177900-75177919 None:intergenic 50.0%
! CCACTCAAGGTAAGTGTTGC+TGG + chr7_2:75177897-75177916 Msa1076680:CDS 50.0%
TCACACACGAGTAGAGGAAC+CGG + chr7_2:75178030-75178049 Msa1076680:intron 50.0%
ACTCTCTTGTCCGTGCATCA+AGG - chr7_2:75178347-75178366 None:intergenic 50.0%
TGATGCACGGACAAGAGAGT+TGG + chr7_2:75178347-75178366 Msa1076680:CDS 50.0%
! GACTGCTGCTTATCCAGCTT+TGG + chr7_2:75178371-75178390 Msa1076680:CDS 50.0%
TAGCCGCCATCCTAACCATT+TGG - chr7_2:75178676-75178695 None:intergenic 50.0%
ATCAGAGCTACTTGAGGGAG+AGG - chr7_2:75179420-75179439 None:intergenic 50.0%
!! TCTCCCTCAAGTAGCTCTGA+TGG + chr7_2:75179419-75179438 Msa1076680:CDS 50.0%
GGACCATCAGAGCTACTTGA+GGG - chr7_2:75179425-75179444 None:intergenic 50.0%
!! GTAGCTCTGATGGTCCCAAT+TGG + chr7_2:75179429-75179448 Msa1076680:CDS 50.0%
! GGAAGTGCAGCAACACTTCA+AGG + chr7_2:75179497-75179516 Msa1076680:CDS 50.0%
GGTGGTGATTCTCACTGGAA+TGG + chr7_2:75180554-75180573 Msa1076680:intron 50.0%
!! CTCGACGCAAAGGTCTTGTT+GGG + chr7_2:75180613-75180632 Msa1076680:CDS 50.0%
CACACACGAGTAGAGGAACC+GGG + chr7_2:75178031-75178050 Msa1076680:intron 55.0%
CCGTAATCAGGTTCGAGTCC+CGG - chr7_2:75178052-75178071 None:intergenic 55.0%
CCGGGACTCGAACCTGATTA+CGG + chr7_2:75178049-75178068 Msa1076680:intron 55.0%
GGGACCATCAGAGCTACTTG+AGG - chr7_2:75179426-75179445 None:intergenic 55.0%
! GCTCGACGCAAAGGTCTTGT+TGG + chr7_2:75180612-75180631 Msa1076680:CDS 55.0%
GATCGATGCACCTTGTTGGG+AGG + chr7_2:75180652-75180671 Msa1076680:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75177329 75181063 75177329 ID=Msa1076680;Name=Msa1076680
chr7_2 mRNA 75177329 75181063 75177329 ID=Msa1076680-mRNA-1;Parent=Msa1076680;Name=Msa1076680-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.75|0.84|0.92|0.91|0.84|13|268|392
chr7_2 exon 75177329 75177550 75177329 ID=Msa1076680-mRNA-1:exon:17810;Parent=Msa1076680-mRNA-1
chr7_2 exon 75177666 75177695 75177666 ID=Msa1076680-mRNA-1:exon:17811;Parent=Msa1076680-mRNA-1
chr7_2 exon 75177831 75177978 75177831 ID=Msa1076680-mRNA-1:exon:17812;Parent=Msa1076680-mRNA-1
chr7_2 exon 75178289 75178410 75178289 ID=Msa1076680-mRNA-1:exon:17813;Parent=Msa1076680-mRNA-1
chr7_2 exon 75178995 75179069 75178995 ID=Msa1076680-mRNA-1:exon:17814;Parent=Msa1076680-mRNA-1
chr7_2 exon 75179335 75179556 75179335 ID=Msa1076680-mRNA-1:exon:17815;Parent=Msa1076680-mRNA-1
chr7_2 exon 75179670 75179702 75179670 ID=Msa1076680-mRNA-1:exon:17816;Parent=Msa1076680-mRNA-1
chr7_2 exon 75179811 75179855 75179811 ID=Msa1076680-mRNA-1:exon:17817;Parent=Msa1076680-mRNA-1
chr7_2 exon 75179939 75179983 75179939 ID=Msa1076680-mRNA-1:exon:17818;Parent=Msa1076680-mRNA-1
chr7_2 exon 75180190 75180219 75180190 ID=Msa1076680-mRNA-1:exon:17819;Parent=Msa1076680-mRNA-1
chr7_2 exon 75180302 75180421 75180302 ID=Msa1076680-mRNA-1:exon:17820;Parent=Msa1076680-mRNA-1
chr7_2 exon 75180555 75180673 75180555 ID=Msa1076680-mRNA-1:exon:17821;Parent=Msa1076680-mRNA-1
chr7_2 exon 75180828 75181063 75180828 ID=Msa1076680-mRNA-1:exon:17822;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75177329 75177550 75177329 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75177666 75177695 75177666 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75177831 75177978 75177831 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75178289 75178410 75178289 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75178995 75179069 75178995 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75179335 75179556 75179335 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75179670 75179702 75179670 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75179811 75179855 75179811 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75179939 75179983 75179939 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75180190 75180219 75180190 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75180302 75180421 75180302 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 CDS 75180555 75180641 75180555 ID=Msa1076680-mRNA-1:cds;Parent=Msa1076680-mRNA-1
chr7_2 three_prime_UTR 75180642 75180673 75180642 ID=Msa1076680-mRNA-1:three_prime_utr;Parent=Msa1076680-mRNA-1
chr7_2 three_prime_UTR 75180828 75181063 75180828 ID=Msa1076680-mRNA-1:three_prime_utr;Parent=Msa1076680-mRNA-1
Gene Sequence

>Msa1076680

ATGGCTCTTGCTAGTTCTGAAGTGGAGCTTAAAGTTCAAGCTATGAATAAGAAGAAAACTACTATTTCAAGAAGCTGGATTTTGCTAGACCGTGATGGTAGAGATATAGTATTGGATGTGGATAAGTATGCTATTATGCGTTTGGTTGAAATTCATGCAAGAGATCTTCGAATAATGGATCCTCTTCTTTCATATCCTTCCACCATTCTTGGAAGAGAGAAACACATAAAAGCTATAATCACTGCTGAAGAGGTATTGGTTAGAGACCCAATGGATGATGATGTTGTGCCTGTTGTTGAAGAGCTACGAAGAAGGTTACCACTCAAGGTAAGTGTTGCTGGTCAAGGCCAAGTAGAAGAAGAGTTATGTGTTCAAGAAGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGTTTCGAGCTTTGGAAGTTGTATTGGAGGCAATTTGTAGTTTCCTTGATGCACGGACAAGAGAGTTGGAGACTGCTGCTTATCCAGCTTTGGATGAACTAACCTCTAAGATCAGCAGTCGTAATTTGGATAAAGTGCGAAAATTAAAAAGTGCAATGACTAGGTTGACAAATCGTGTTCACAAGATAAGAGAGGAACTAGAAAACCTACTTGATGATGATGATGACATGGCTGAACTTTATTTATCAAGAAAGATGGCTGTTTCATCCTCTCCCTCAAGTAGCTCTGATGGTCCCAATTGGCATCACAGTCCATATCAAGGTTCAAAAATACACAGATCAAGCAGAGGAAGTGCAGCAACACTTCAAGGGGAGAATGATGTTGAAGAGCTTGAGATGTTACTAGAGTCGGCGTTGAAGTTGTCTGATCAAGATCGGACGGCCTATTTCATACAAATTGATGGAACATTAAATAAATTGACCACGGTGCGAGAGTATATTGATGACACCGAAGATTACATTAACATACAGCTTGATAATCACCGAAATCAACTGATTCAGCTAGAGCTATTCCTAAGTTCCGGGACTGTTTGTTTATCAATATATTCATTGGTAGCTGCAATATTTGGTATGAACATTCCATATACATGGAAAGAAGGTCACGCATATGTATTTAAATGGGTGGTGATTCTCACTGGAATGGTTTGTGGAACCTTCTTTTTGTCCATAATATCGTATGCTCGACGCAAAGGTCTTGTTGGGTCTTGA

Protein sequence

>Msa1076680

MALASSEVELKVQAMNKKKTTISRSWILLDRDGRDIVLDVDKYAIMRLVEIHARDLRIMDPLLSYPSTILGREKHIKAIITAEEVLVRDPMDDDVVPVVEELRRRLPLKVSVAGQGQVEEELCVQEGEGGEENEFPFEFRALEVVLEAICSFLDARTRELETAAYPALDELTSKISSRNLDKVRKLKSAMTRLTNRVHKIREELENLLDDDDDMAELYLSRKMAVSSSPSSSSDGPNWHHSPYQGSKIHRSSRGSAATLQGENDVEELEMLLESALKLSDQDRTAYFIQIDGTLNKLTTVREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWKEGHAYVFKWVVILTGMVCGTFFLSIISYARRKGLVGS*