AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542010 MtrunA17_Chr4g0033921 77.852 149 4 2 1 149 99 218 3.93e-74 220
Msa0542010 MtrunA17_Chr3g0079511 31.690 142 67 4 1 142 43 154 8.71e-18 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542010 AT2G30695.2 30.496 141 68 3 1 141 83 193 2.80e-16 72.4
Msa0542010 AT2G30695.3 30.496 141 68 3 1 141 83 193 2.80e-16 72.4
Msa0542010 AT2G30695.1 30.496 141 68 3 1 141 83 193 2.80e-16 72.4

Find 29 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAGCAGGAAAAGAATT+TGG 0.180310 4_1:-26104621 Msa0542010:CDS
CCGTACGGCCTAGGTTTATA+AGG 0.338442 4_1:+26106235 None:intergenic
ACATTTGATTTCCCGATTCC+AGG 0.355955 4_1:-26104709 Msa0542010:CDS
CTGGTGGGGCCGTACGGCCT+AGG 0.356174 4_1:+26106226 None:intergenic
CCTGGATTTCGCATGCAAAA+AGG 0.372253 4_1:-26106201 Msa0542010:CDS
ACTTCCTTCTACAGATGCTT+GGG 0.399626 4_1:-26104860 Msa0542010:CDS
CTTCCCCAAGCATCTGTAGA+AGG 0.423340 4_1:+26104856 None:intergenic
ATCTGTAGAAGGAAGTCTTT+CGG 0.427957 4_1:+26104867 None:intergenic
GACTTCCTTCTACAGATGCT+TGG 0.439445 4_1:-26104861 Msa0542010:CDS
CAAAACAAGTTATTCACCTT+CGG 0.464607 4_1:+26104569 None:intergenic
TGCATGCGAAATCCAGGCAC+TGG 0.488521 4_1:+26106207 None:intergenic
CGTACGGCCCCACCAGTGCC+TGG 0.488782 4_1:-26106219 Msa0542010:CDS
CAGGCACTGGTGGGGCCGTA+CGG 0.501017 4_1:+26106220 None:intergenic
GGCCTAGGTTTATAAGGATC+CGG 0.507409 4_1:+26106241 None:intergenic
TGCGAAATCCAGGCACTGGT+GGG 0.515069 4_1:+26106211 None:intergenic
TCTCCTGTATGTGACTGTCA+TGG 0.525419 4_1:-26104756 Msa0542010:CDS
TATCCATGACAGTCACATAC+AGG 0.530940 4_1:+26104753 None:intergenic
AAACACAGAAGGTATTTGAC+CGG 0.556911 4_1:-26106260 Msa0542010:CDS
CCTTATAAACCTAGGCCGTA+CGG 0.559295 4_1:-26106235 Msa0542010:CDS
CTTAGATGCAAAGGACAAGA+AGG 0.565021 4_1:-26104682 Msa0542010:CDS
CCAGGAAAACTTAGATGCAA+AGG 0.568120 4_1:-26104691 Msa0542010:CDS
GTTTAAATGGCAGTTAAGAG+TGG 0.573603 4_1:-26106298 Msa0542010:intron
CAGTTAAGAGTGGACTTGAC+TGG 0.592282 4_1:-26106288 Msa0542010:CDS
ATGCGAAATCCAGGCACTGG+TGG 0.601200 4_1:+26106210 None:intergenic
CTTCCTTCTACAGATGCTTG+GGG 0.611133 4_1:-26104859 Msa0542010:CDS
GACTGGTGTTCAAACACAGA+AGG 0.630186 4_1:-26106271 Msa0542010:CDS
GCGAAATCCAGGCACTGGTG+GGG 0.648008 4_1:+26106212 None:intergenic
GACCGGATCCTTATAAACCT+AGG 0.648713 4_1:-26106243 Msa0542010:CDS
AGAAATACTCAATTGTACCA+TGG 0.664939 4_1:-26104808 Msa0542010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTTTACATGATAAA+AGG + chr4_1:26105293-26105312 None:intergenic 10.0%
!! ATAAAAACAAAATATATCGT+TGG + chr4_1:26105011-26105030 None:intergenic 15.0%
!!! TGTTTTTATATAACAATCAT+CGG - chr4_1:26105022-26105041 Msa0542010:intron 15.0%
!! AGTAATTAAGTTAAAATTCA+GGG + chr4_1:26106450-26106469 None:intergenic 15.0%
!! AAGTAATTAAGTTAAAATTC+AGG + chr4_1:26106451-26106470 None:intergenic 15.0%
!! AAGAATGAATGAATAATTTA+TGG + chr4_1:26106592-26106611 None:intergenic 15.0%
!! AGATTATGACATAAAAAACA+TGG - chr4_1:26105058-26105077 Msa0542010:intron 20.0%
!! AAGTATGAATCATCATAATA+GGG + chr4_1:26105590-26105609 None:intergenic 20.0%
!! AAAGTATGAATCATCATAAT+AGG + chr4_1:26105591-26105610 None:intergenic 20.0%
!! GACAAATAACAAGTTTATAT+AGG + chr4_1:26106344-26106363 None:intergenic 20.0%
!! GATATATTATCATGATTCAT+GGG + chr4_1:26106747-26106766 None:intergenic 20.0%
!! AGATATATTATCATGATTCA+TGG + chr4_1:26106748-26106767 None:intergenic 20.0%
! TTAAAAATTCAGGTATGAGA+CGG + chr4_1:26104900-26104919 None:intergenic 25.0%
! ATGCATGATCTTCATATATT+TGG + chr4_1:26104981-26105000 None:intergenic 25.0%
!! TTTTATATAACAATCATCGG+TGG - chr4_1:26105025-26105044 Msa0542010:intron 25.0%
! ATATATGTATGTATATGCAC+CGG - chr4_1:26105110-26105129 Msa0542010:intron 25.0%
!! TGTATTTTCTTGATCATCAA+AGG - chr4_1:26106003-26106022 Msa0542010:intron 25.0%
! AATACAGGAAGTGATAAAAT+GGG + chr4_1:26106123-26106142 None:intergenic 25.0%
! AAATACAGGAAGTGATAAAA+TGG + chr4_1:26106124-26106143 None:intergenic 25.0%
!! ATTTTATCACTTCCTGTATT+TGG - chr4_1:26106123-26106142 Msa0542010:intron 25.0%
!!! TTTTTTCACTAACCAAATAC+AGG + chr4_1:26106138-26106157 None:intergenic 25.0%
!!! TTTACTGGTTTTCTCATAAT+TGG + chr4_1:26106260-26106279 None:intergenic 25.0%
! ATAACAAGTTTATATAGGCA+GGG + chr4_1:26106339-26106358 None:intergenic 25.0%
! AATAACAAGTTTATATAGGC+AGG + chr4_1:26106340-26106359 None:intergenic 25.0%
! TGAGATAAAACTTAATCTCA+GGG + chr4_1:26106667-26106686 None:intergenic 25.0%
! TTGAGATAAAACTTAATCTC+AGG + chr4_1:26106668-26106687 None:intergenic 25.0%
AAGTGTTAAGAAGGGAATAA+TGG - chr4_1:26104582-26104601 Msa0542010:CDS 30.0%
CTGAGAATCAAATAAAGGTA+AGG + chr4_1:26104661-26104680 None:intergenic 30.0%
GAAAGCTGAGAATCAAATAA+AGG + chr4_1:26104666-26104685 None:intergenic 30.0%
AAAGGTTTCCTTTACATTCT+GGG - chr4_1:26104701-26104720 Msa0542010:CDS 30.0%
AAAGTAATTACTTGCCCATT+AGG + chr4_1:26104814-26104833 None:intergenic 30.0%
CAGAATATATTGGAATTCTG+TGG + chr4_1:26104874-26104893 None:intergenic 30.0%
TGGTTATCTTGTGGTTTAAA+TGG - chr4_1:26105397-26105416 Msa0542010:intron 30.0%
TGAGTTTGACATATTGTGAT+AGG - chr4_1:26105634-26105653 Msa0542010:intron 30.0%
GAGTTTGACATATTGTGATA+GGG - chr4_1:26105635-26105654 Msa0542010:intron 30.0%
! AGGATAAGGGTTTTTAAATG+GGG + chr4_1:26105791-26105810 None:intergenic 30.0%
! GAGGATAAGGGTTTTTAAAT+GGG + chr4_1:26105792-26105811 None:intergenic 30.0%
! TGAGGATAAGGGTTTTTAAA+TGG + chr4_1:26105793-26105812 None:intergenic 30.0%
!! TTTTTAGTGTGTCTAGAATG+TGG + chr4_1:26105845-26105864 None:intergenic 30.0%
ACTTTATAAGCTCCATTTGT+TGG - chr4_1:26105899-26105918 Msa0542010:intron 30.0%
!! GCATTGATGTTTTGTAACAA+GGG + chr4_1:26105934-26105953 None:intergenic 30.0%
CCAAAAAATTGAAAAGTTGC+AGG + chr4_1:26105956-26105975 None:intergenic 30.0%
! CCTGCAACTTTTCAATTTTT+TGG - chr4_1:26105953-26105972 Msa0542010:intron 30.0%
AATACATGATGCAAATGTGA+AGG + chr4_1:26105989-26106008 None:intergenic 30.0%
!! TGAAAATAGAAGTGTTTCCT+TGG - chr4_1:26106031-26106050 Msa0542010:intron 30.0%
!! TTAGCTTGTGTTCTTTACAA+AGG - chr4_1:26106083-26106102 Msa0542010:intron 30.0%
TGAGAAAACCAGTAAATGAA+AGG - chr4_1:26106264-26106283 Msa0542010:CDS 30.0%
TTTCGTTTCCTTTCATTTAC+TGG + chr4_1:26106275-26106294 None:intergenic 30.0%
!! ACTTGTTATTTGTCTCTTGT+TGG - chr4_1:26106350-26106369 Msa0542010:intron 30.0%
AATTCTGAACTATGATGAAC+AGG + chr4_1:26106404-26106423 None:intergenic 30.0%
AGAAATACTCAATTGTACCA+TGG - chr4_1:26106900-26106919 Msa0542010:intron 30.0%
!!! CTTTTTTGTATAATCAGCCA+TGG + chr4_1:26106920-26106939 None:intergenic 30.0%
CATGGCTGATTATACAAAAA+AGG - chr4_1:26106918-26106937 Msa0542010:intron 30.0%
TGTTAAGAAGGGAATAATGG+AGG - chr4_1:26104585-26104604 Msa0542010:CDS 35.0%
!! TTCTTGCTATTATCGACCAA+AGG - chr4_1:26104683-26104702 Msa0542010:CDS 35.0%
CAGAATGTAAAGGAAACCTT+TGG + chr4_1:26104702-26104721 None:intergenic 35.0%
CAAAGGTTTCCTTTACATTC+TGG - chr4_1:26104700-26104719 Msa0542010:CDS 35.0%
ACCTTCATATATAGCACACA+AGG - chr4_1:26104748-26104767 Msa0542010:CDS 35.0%
CCTTCATATATAGCACACAA+GGG - chr4_1:26104749-26104768 Msa0542010:CDS 35.0%
TATAGCACACAAGGGAATAT+TGG - chr4_1:26104757-26104776 Msa0542010:CDS 35.0%
TTCTGTGGTAGATAATAGCA+AGG + chr4_1:26104859-26104878 None:intergenic 35.0%
TGCTGACAGGTTAAAAATTC+AGG + chr4_1:26104910-26104929 None:intergenic 35.0%
!! TTTCTAGTAACCTGCTGTTT+TGG - chr4_1:26105365-26105384 Msa0542010:intron 35.0%
!!! TTCTAGTAACCTGCTGTTTT+GGG - chr4_1:26105366-26105385 Msa0542010:intron 35.0%
!! GGATTGATTTGGTTATCTTG+TGG - chr4_1:26105388-26105407 Msa0542010:intron 35.0%
GTTTAAATGGCAGTTAAGAG+TGG - chr4_1:26105410-26105429 Msa0542010:intron 35.0%
!! AAACACAGAAGGTATTTGAC+CGG - chr4_1:26105448-26105467 Msa0542010:intron 35.0%
ACATATTGTGATAGGGACTT+GGG - chr4_1:26105642-26105661 Msa0542010:intron 35.0%
CATCTCACATTACTTGATGT+GGG + chr4_1:26105687-26105706 None:intergenic 35.0%
! GATAAGGGTTTTTAAATGGG+GGG + chr4_1:26105789-26105808 None:intergenic 35.0%
! GGATAAGGGTTTTTAAATGG+GGG + chr4_1:26105790-26105809 None:intergenic 35.0%
TTTCGCAGAAAAATGGTCAT+CGG + chr4_1:26105868-26105887 None:intergenic 35.0%
! GCTCTTATTTCGCAGAAAAA+TGG + chr4_1:26105875-26105894 None:intergenic 35.0%
!!! GGCATTGATGTTTTGTAACA+AGG + chr4_1:26105935-26105954 None:intergenic 35.0%
TCTTTACAAAGGAAAGACCT+TGG - chr4_1:26106094-26106113 Msa0542010:intron 35.0%
TAGTGAAAAAATCCACCTTG+TGG - chr4_1:26106147-26106166 Msa0542010:intron 35.0%
AGTGAAAAAATCCACCTTGT+GGG - chr4_1:26106148-26106167 Msa0542010:intron 35.0%
TTTAACAGAGAAATCCCACA+AGG + chr4_1:26106165-26106184 None:intergenic 35.0%
TCATAATTGGACTGCATATC+TGG + chr4_1:26106247-26106266 None:intergenic 35.0%
CAAATGCTAATTACATCGAG+AGG - chr4_1:26106313-26106332 Msa0542010:intron 35.0%
! TCGTTGAAGTTGACTTTGTT+AGG - chr4_1:26106803-26106822 Msa0542010:intron 35.0%
ATCTGTAGAAGGAAGTCTTT+CGG + chr4_1:26106844-26106863 None:intergenic 35.0%
! ATCTAAGTTTTCCTGGAATC+GGG + chr4_1:26107013-26107032 None:intergenic 35.0%
! CATCTAAGTTTTCCTGGAAT+CGG + chr4_1:26107014-26107033 None:intergenic 35.0%
CTCAAAAAATCATTCACAGC+AGG - chr4_1:26107075-26107094 Msa0542010:intron 35.0%
TTCACAGCAGGAAAAGAATT+TGG - chr4_1:26107087-26107106 Msa0542010:intron 35.0%
! TATTCACCTTCGGAGTTTTT+AGG + chr4_1:26107132-26107151 None:intergenic 35.0%
TGACCTCAATGTCACCTAAT+GGG - chr4_1:26104625-26104644 Msa0542010:CDS 40.0%
AAGGTAATTGCTTGCCCATT+AGG + chr4_1:26104642-26104661 None:intergenic 40.0%
ACATACGACCCAGAATGTAA+AGG + chr4_1:26104712-26104731 None:intergenic 40.0%
!! TTCTGGGTCGTATGTTTTAG+TGG - chr4_1:26104717-26104736 Msa0542010:CDS 40.0%
!!! GGTCGTATGTTTTAGTGGTT+TGG - chr4_1:26104722-26104741 Msa0542010:CDS 40.0%
CCCTTGTGTGCTATATATGA+AGG + chr4_1:26104752-26104771 None:intergenic 40.0%
ATTAGGTGACATTTGAGAGC+AGG + chr4_1:26104797-26104816 None:intergenic 40.0%
TGCTCTCAAATGTCACCTAA+TGG - chr4_1:26104796-26104815 Msa0542010:CDS 40.0%
GCTCTCAAATGTCACCTAAT+GGG - chr4_1:26104797-26104816 Msa0542010:CDS 40.0%
! CCATTTATTCATGTGCTGAC+AGG + chr4_1:26104923-26104942 None:intergenic 40.0%
CCTGTCAGCACATGAATAAA+TGG - chr4_1:26104920-26104939 Msa0542010:intron 40.0%
!!! TCTAGTAACCTGCTGTTTTG+GGG - chr4_1:26105367-26105386 Msa0542010:intron 40.0%
AAATCAATCCCCAAAACAGC+AGG + chr4_1:26105378-26105397 None:intergenic 40.0%
!!! TGCTGTTTTGGGGATTGATT+TGG - chr4_1:26105377-26105396 Msa0542010:intron 40.0%
GACATATTGTGATAGGGACT+TGG - chr4_1:26105641-26105660 Msa0542010:intron 40.0%
TGATAGGGACTTGGGTATTA+TGG - chr4_1:26105650-26105669 Msa0542010:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG - chr4_1:26105651-26105670 Msa0542010:intron 40.0%
ATAGGGACTTGGGTATTATG+GGG - chr4_1:26105652-26105671 Msa0542010:intron 40.0%
CATTACTTGATGTGGGACTT+GGG + chr4_1:26105680-26105699 None:intergenic 40.0%
ACATTACTTGATGTGGGACT+TGG + chr4_1:26105681-26105700 None:intergenic 40.0%
GCATCTCACATTACTTGATG+TGG + chr4_1:26105688-26105707 None:intergenic 40.0%
TGAGATGCTTTGTGATAGCT+AGG - chr4_1:26105700-26105719 Msa0542010:intron 40.0%
CAAGCAACTCTTGAGGATAA+GGG + chr4_1:26105804-26105823 None:intergenic 40.0%
TCAAGCAACTCTTGAGGATA+AGG + chr4_1:26105805-26105824 None:intergenic 40.0%
! TAGTGTGTCTAGAATGTGGT+TGG + chr4_1:26105841-26105860 None:intergenic 40.0%
AAGTGTTTCCTTGGTATTCG+TGG - chr4_1:26106040-26106059 Msa0542010:intron 40.0%
!!! GTGGTCTTGTTCTTGGTTTT+AGG - chr4_1:26106059-26106078 Msa0542010:intron 40.0%
AGTGATAAAATGGGCATCCA+AGG + chr4_1:26106114-26106133 None:intergenic 40.0%
GGGATTTCTCTGTTAAACCT+TGG - chr4_1:26106168-26106187 Msa0542010:intron 40.0%
ACTTCCTTCTACAGATGCTT+GGG - chr4_1:26106848-26106867 Msa0542010:intron 40.0%
TATCCATGACAGTCACATAC+AGG + chr4_1:26106958-26106977 None:intergenic 40.0%
! ACATTTGATTTCCCGATTCC+AGG - chr4_1:26106999-26107018 Msa0542010:intron 40.0%
! CCTTTGCATCTAAGTTTTCC+TGG + chr4_1:26107020-26107039 None:intergenic 40.0%
CCAGGAAAACTTAGATGCAA+AGG - chr4_1:26107017-26107036 Msa0542010:intron 40.0%
CTTAGATGCAAAGGACAAGA+AGG - chr4_1:26107026-26107045 Msa0542010:intron 40.0%
ATTGAGCCTAAAAACTCCGA+AGG - chr4_1:26107123-26107142 Msa0542010:intron 40.0%
CTGACCTCAATGTCACCTAA+TGG - chr4_1:26104624-26104643 Msa0542010:CDS 45.0%
TTGCCCATTAGGTGACATTG+AGG + chr4_1:26104631-26104650 None:intergenic 45.0%
GAGACGGACGCAGAATATAT+TGG + chr4_1:26104884-26104903 None:intergenic 45.0%
! CAGTTAAGAGTGGACTTGAC+TGG - chr4_1:26105420-26105439 Msa0542010:intron 45.0%
GACTGGTGTTCAAACACAGA+AGG - chr4_1:26105437-26105456 Msa0542010:intron 45.0%
GACCGGATCCTTATAAACCT+AGG - chr4_1:26105465-26105484 Msa0542010:intron 45.0%
GGCCTAGGTTTATAAGGATC+CGG + chr4_1:26105470-26105489 None:intergenic 45.0%
CCTTATAAACCTAGGCCGTA+CGG - chr4_1:26105473-26105492 Msa0542010:intron 45.0%
! CCTTTTTGCATGCGAAATCC+AGG + chr4_1:26105510-26105529 None:intergenic 45.0%
CCTGGATTTCGCATGCAAAA+AGG - chr4_1:26105507-26105526 Msa0542010:intron 45.0%
GGATTTCGCATGCAAAAAGG+AGG - chr4_1:26105510-26105529 Msa0542010:intron 45.0%
! AAGGGTTTTTAAATGGGGGG+AGG + chr4_1:26105786-26105805 None:intergenic 45.0%
TTGTGCTCAAGCAACTCTTG+AGG + chr4_1:26105811-26105830 None:intergenic 45.0%
TCAAGAGTTGCTTGAGCACA+AGG - chr4_1:26105810-26105829 Msa0542010:intron 45.0%
GCAAATGTGAAGGTCACTTG+TGG + chr4_1:26105979-26105998 None:intergenic 45.0%
GAACAAGACCACGAATACCA+AGG + chr4_1:26106051-26106070 None:intergenic 45.0%
!! GGTATTCGTGGTCTTGTTCT+TGG - chr4_1:26106052-26106071 Msa0542010:intron 45.0%
AACAGAGAAATCCCACAAGG+TGG + chr4_1:26106162-26106181 None:intergenic 45.0%
ACAACTGAGAGTGAAGGAGA+GGG + chr4_1:26106216-26106235 None:intergenic 45.0%
ACAGAGACAACTGAGAGTGA+AGG + chr4_1:26106222-26106241 None:intergenic 45.0%
TGCTCCAGGGAAATCATCAA+AGG - chr4_1:26106496-26106515 Msa0542010:intron 45.0%
GACTTCCTTCTACAGATGCT+TGG - chr4_1:26106847-26106866 Msa0542010:intron 45.0%
CTTCCTTCTACAGATGCTTG+GGG - chr4_1:26106849-26106868 Msa0542010:intron 45.0%
TCTCCTGTATGTGACTGTCA+TGG - chr4_1:26106952-26106971 Msa0542010:intron 45.0%
!! TAAAAGAAAAATAAAAATAT+TGG + chr4_1:26106532-26106551 None:intergenic 5.0%
CAGTCTGCAGGTAATTCGAC+CGG + chr4_1:26105132-26105151 None:intergenic 50.0%
CCGTACGGCCTAGGTTTATA+AGG + chr4_1:26105476-26105495 None:intergenic 50.0%
GGGCATAAGCAGCCAACAAA+TGG + chr4_1:26105914-26105933 None:intergenic 50.0%
GAAGGAGAGGGTCAACTTGA+CGG + chr4_1:26106204-26106223 None:intergenic 50.0%
GACAACTGAGAGTGAAGGAG+AGG + chr4_1:26106217-26106236 None:intergenic 50.0%
! CGCACCTTTGATGATTTCCC+TGG + chr4_1:26106503-26106522 None:intergenic 50.0%
CTTCCCCAAGCATCTGTAGA+AGG + chr4_1:26106855-26106874 None:intergenic 50.0%
CGTGAATGCTTGCAGTCTGC+AGG + chr4_1:26105144-26105163 None:intergenic 55.0%
!! TGCGAAATCCAGGCACTGGT+GGG + chr4_1:26105500-26105519 None:intergenic 55.0%
!! ATGCGAAATCCAGGCACTGG+TGG + chr4_1:26105501-26105520 None:intergenic 55.0%
TGCATGCGAAATCCAGGCAC+TGG + chr4_1:26105504-26105523 None:intergenic 55.0%
TTGACGGAGGTTGAGGACCA+AGG + chr4_1:26106188-26106207 None:intergenic 55.0%
GGTCAACTTGACGGAGGTTG+AGG + chr4_1:26106195-26106214 None:intergenic 55.0%
GGAGCAGTTCACACATCGCA+AGG + chr4_1:26106482-26106501 None:intergenic 55.0%
TGCGATGTGTGAACTGCTCC+AGG - chr4_1:26106482-26106501 Msa0542010:intron 55.0%
GCGATGTGTGAACTGCTCCA+GGG - chr4_1:26106483-26106502 Msa0542010:intron 55.0%
!! GCGAAATCCAGGCACTGGTG+GGG + chr4_1:26105499-26105518 None:intergenic 60.0%
GGAGAGGGTCAACTTGACGG+AGG + chr4_1:26106201-26106220 None:intergenic 60.0%
!! CAGGCACTGGTGGGGCCGTA+CGG + chr4_1:26105491-26105510 None:intergenic 70.0%
CTGGTGGGGCCGTACGGCCT+AGG + chr4_1:26105485-26105504 None:intergenic 75.0%
CGTACGGCCCCACCAGTGCC+TGG - chr4_1:26105489-26105508 Msa0542010:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 26104578 26107152 26104578 ID=Msa0542010;Name=Msa0542010
chr4_1 mRNA 26104578 26107152 26104578 ID=Msa0542010-mRNA-1;Parent=Msa0542010;Name=Msa0542010-mRNA-1;_AED=0.02;_eAED=0.16;_QI=0|0|0|0.66|0|0|3|0|149
chr4_1 exon 26107147 26107152 26107147 ID=Msa0542010-mRNA-1:exon:7122;Parent=Msa0542010-mRNA-1
chr4_1 exon 26106192 26106307 26106192 ID=Msa0542010-mRNA-1:exon:7121;Parent=Msa0542010-mRNA-1
chr4_1 exon 26104578 26104905 26104578 ID=Msa0542010-mRNA-1:exon:7120;Parent=Msa0542010-mRNA-1
chr4_1 CDS 26107147 26107152 26107147 ID=Msa0542010-mRNA-1:cds;Parent=Msa0542010-mRNA-1
chr4_1 CDS 26106192 26106307 26106192 ID=Msa0542010-mRNA-1:cds;Parent=Msa0542010-mRNA-1
chr4_1 CDS 26104578 26104905 26104578 ID=Msa0542010-mRNA-1:cds;Parent=Msa0542010-mRNA-1
Gene Sequence

>Msa0542010

ATGAAATTAAGAGTGGACTTGACTGGTGTTCAAACACAGAAGGTATTTGACCGGATCCTTATAAACCTAGGCCGTACGGCCCCACCAGTGCCTGGATTTCGCATGCAAAAAGGAGGTAAAAAGAAATCGATGCAGATTCCGAAAGACTTCCTTCTACAGATGCTTGGGGAAGAACGTGTCACTAAGTTTGCAATACAAGAAATACTCAATTGTACCATGGCTGATTATACAAAAAAGGCAAGTGATTTTTCTCCTGTATGTGACTGTCATGGATATATATGTATAAACTTATTTTCACATTTGATTTCCCGATTCCAGGAAAACTTAGATGCAAAGGACAAGAAGGTTAGCACTATTCAAACGATACAAGAACTCAAAAAATCATTCACAGCAGGAAAAGAATTTGGATTCAATGTTCTAATTGAGCCTAAAAACTCCGAAGGTGAATAA

Protein sequence

>Msa0542010

MKLRVDLTGVQTQKVFDRILINLGRTAPPVPGFRMQKGGKKKSMQIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKKASDFSPVCDCHGYICINLFSHLISRFQENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEGE*