Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078000 | Msa0511320 | 0.812163 | 4.867201e-51 | -8.615850e-47 |
| Msa0170560 | Msa0511320 | 0.812126 | 4.960440e-51 | -8.615850e-47 |
| Msa0172960 | Msa0511320 | 0.804327 | 2.278336e-49 | -8.615850e-47 |
| Msa0236980 | Msa0511320 | -0.804194 | 2.427910e-49 | -8.615850e-47 |
| Msa0465480 | Msa0511320 | 0.842446 | 2.573679e-58 | -8.615850e-47 |
| Msa0328210 | Msa0511320 | -0.813043 | 3.124774e-51 | -8.615850e-47 |
| Msa0511320 | Msa0775260 | -0.811911 | 5.523108e-51 | -8.615850e-47 |
| Msa0511320 | Msa0790390 | 0.804468 | 2.129229e-49 | -8.615850e-47 |
| Msa0511320 | Msa1171770 | 0.874840 | 4.929626e-68 | -8.615850e-47 |
| Msa0511320 | Msa1193950 | 0.809942 | 1.474510e-50 | -8.615850e-47 |
| Msa0511320 | Msa1403580 | 0.812928 | 3.312353e-51 | -8.615850e-47 |
| Msa0511320 | Msa1443290 | 0.800916 | 1.151175e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0511320 | MtrunA17_Chr3g0094731 | 89.655 | 29 | 3 | 0 | 37 | 65 | 2 | 30 | 1.06e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 128 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTTGGTTTGCCCTTAT+TGG | 0.113834 | 3_4:-60829956 | Msa0511320:three_prime_UTR |
| CCAAAGATTTGATGCTTTAA+AGG | 0.137745 | 3_4:-60830858 | Msa0511320:three_prime_UTR |
| CATAACTGGTTTATATGTTT+TGG | 0.181603 | 3_4:-60830387 | Msa0511320:three_prime_UTR |
| GATGTAAGTCTTCTCGTTTC+AGG | 0.212723 | 3_4:-60830488 | Msa0511320:three_prime_UTR |
| CCTTTAAAGCATCAAATCTT+TGG | 0.214941 | 3_4:+60830858 | None:intergenic |
| TTTGCCCTTATTGGCTTATA+AGG | 0.252639 | 3_4:-60829947 | Msa0511320:three_prime_UTR |
| TTTCTTTCTTCAAATCAATT+AGG | 0.258499 | 3_4:+60829635 | None:intergenic |
| TTATTGGCTTATAAGGATTC+AGG | 0.266337 | 3_4:-60829940 | Msa0511320:three_prime_UTR |
| TGAATCCTTATAAGCCAATA+AGG | 0.269795 | 3_4:+60829942 | None:intergenic |
| AAAGCATTTCTTGAGTAAAA+AGG | 0.276516 | 3_4:+60830453 | None:intergenic |
| CTTTGGGTATATGCAATTAA+AGG | 0.278656 | 3_4:+60830875 | None:intergenic |
| CCTTACAAGTTACAACAAAT+AGG | 0.282293 | 3_4:+60831878 | None:intergenic |
| ATGGTTATTTGTTGAGAAAT+TGG | 0.286770 | 3_4:-60829843 | Msa0511320:three_prime_UTR |
| TGTGCTGCTACTTAGTTTGT+TGG | 0.298882 | 3_4:-60829985 | Msa0511320:three_prime_UTR |
| TTCTTGCTGTTCAAAGTTAG+AGG | 0.315918 | 3_4:-60829745 | Msa0511320:three_prime_UTR |
| TTGCTCTTGTTGTCTTGGTC+TGG | 0.321036 | 3_4:-60830559 | Msa0511320:three_prime_UTR |
| CATCATGTTATTCTCGTTGC+AGG | 0.326129 | 3_4:-60830135 | Msa0511320:three_prime_UTR |
| CATTGTTGCTCTTGTTGTCT+TGG | 0.328685 | 3_4:-60830564 | Msa0511320:three_prime_UTR |
| GGATTCTCATGAACTTGTTA+AGG | 0.337060 | 3_4:+60831540 | None:intergenic |
| CTTACAAGTTACAACAAATA+GGG | 0.340146 | 3_4:+60831879 | None:intergenic |
| TTGATGCTTTAAAGGACAAT+TGG | 0.341171 | 3_4:-60830850 | Msa0511320:three_prime_UTR |
| CTTTAAAGCATCAAATCTTT+GGG | 0.343852 | 3_4:+60830859 | None:intergenic |
| CCATTAGTTCTGATTCCATT+TGG | 0.350172 | 3_4:-60830337 | Msa0511320:three_prime_UTR |
| TAAGGTTCGGTCGCTTGCTT+TGG | 0.353148 | 3_4:+60832034 | None:intergenic |
| CCTATTTGTTGTAACTTGTA+AGG | 0.353633 | 3_4:-60831878 | Msa0511320:intron |
| ATTGGAGTGCCCTATGGTTT+TGG | 0.356794 | 3_4:-60829825 | Msa0511320:three_prime_UTR |
| AGAACTCTATTAACCTTTGA+AGG | 0.358221 | 3_4:+60831492 | None:intergenic |
| TCTGATTCTGCCGTTGCATC+TGG | 0.359311 | 3_4:-60830809 | Msa0511320:three_prime_UTR |
| CATTAGTTCTGATTCCATTT+GGG | 0.372702 | 3_4:-60830336 | Msa0511320:three_prime_UTR |
| TATTGTAATGGATGTCAAAA+TGG | 0.373197 | 3_4:-60830774 | Msa0511320:three_prime_UTR |
| ACCGATGAAACCTTTCTTGA+AGG | 0.377730 | 3_4:-60830668 | Msa0511320:three_prime_UTR |
| TGAATGCTAGTGTTGTAAAA+AGG | 0.384855 | 3_4:-60830637 | Msa0511320:three_prime_UTR |
| CTCATGAACTTGTTAAGGTT+CGG | 0.384934 | 3_4:+60831545 | None:intergenic |
| CGCCGGCGGTGGTGTGGTGG+TGG | 0.392155 | 3_4:+60832008 | None:intergenic |
| CATGACCATTCCTTCAAGAA+AGG | 0.407072 | 3_4:+60830658 | None:intergenic |
| ATGTAACCAGTGGAGCAAAA+AGG | 0.410867 | 3_4:+60830108 | None:intergenic |
| TTTGTTGGTCTTTGTCAACT+TGG | 0.414907 | 3_4:-60829970 | Msa0511320:three_prime_UTR |
| TAATGGACCTCGTAAGAGTT+TGG | 0.421250 | 3_4:+60830354 | None:intergenic |
| GCAAACACATGTAGTCTTGA+TGG | 0.423869 | 3_4:+60830158 | None:intergenic |
| AACTAAGTAGCAGCACAAAT+AGG | 0.429506 | 3_4:+60829991 | None:intergenic |
| CTGAATAATCATGCAGGAAA+AGG | 0.430468 | 3_4:+60830285 | None:intergenic |
| GTGGTGTGGTGGTGGATGTA+AGG | 0.435643 | 3_4:+60832016 | None:intergenic |
| TTGATCTAAATTTAGACGAT+TGG | 0.435971 | 3_4:-60830944 | Msa0511320:three_prime_UTR |
| TTCGGTCGCTTGCTTTGGTC+GGG | 0.441888 | 3_4:+60832039 | None:intergenic |
| GTTCGGTCGCTTGCTTTGGT+CGG | 0.444976 | 3_4:+60832038 | None:intergenic |
| TGATGCTTTAAAGGACAATT+GGG | 0.445203 | 3_4:-60830849 | Msa0511320:three_prime_UTR |
| CCAAATGGAATCAGAACTAA+TGG | 0.447172 | 3_4:+60830337 | None:intergenic |
| AATTAAATAAGTTATTGTAA+TGG | 0.447242 | 3_4:-60830786 | Msa0511320:three_prime_UTR |
| AGAAGGAGATGAAACTGAAT+AGG | 0.450844 | 3_4:+60832103 | None:intergenic |
| TGGTCGCGGCTCGCCGGCGG+TGG | 0.462159 | 3_4:+60831997 | None:intergenic |
| GCAGGGTTCTTCAAAGCCCC+TGG | 0.463363 | 3_4:+60830245 | None:intergenic |
| AATGCATAGATATTCAGAAA+TGG | 0.466377 | 3_4:+60830583 | None:intergenic |
| TCTATTAACCTTTGAAGGAC+GGG | 0.469209 | 3_4:+60831497 | None:intergenic |
| AGCATTTACAGATATACAAC+TGG | 0.476097 | 3_4:+60830217 | None:intergenic |
| AGATACAGTTACTGCCCAAA+TGG | 0.476656 | 3_4:+60830322 | None:intergenic |
| CAGTGTGTACACAAAACTTA+AGG | 0.477379 | 3_4:+60830022 | None:intergenic |
| GAGGATGCGGCGGTGACGGA+TGG | 0.479179 | 3_4:+60831962 | None:intergenic |
| GGAGGAGGATGCGGCGGTGA+CGG | 0.484253 | 3_4:+60831958 | None:intergenic |
| CTTCTCCGCCTCGAGCCAAA+TGG | 0.488538 | 3_4:-60830739 | Msa0511320:three_prime_UTR |
| GAATCCACTGTCAAAGCCCC+AGG | 0.489514 | 3_4:-60830263 | Msa0511320:three_prime_UTR |
| ACAGAAGATGGAGGAGGATG+CGG | 0.495172 | 3_4:+60831949 | None:intergenic |
| CGTTCTCAGATGAAAGAGAA+AGG | 0.497516 | 3_4:+60832078 | None:intergenic |
| GCGGCTCGCCGGCGGTGGTG+TGG | 0.498620 | 3_4:+60832002 | None:intergenic |
| GAATATAAGTTTGAGATCAA+TGG | 0.499009 | 3_4:-60829918 | Msa0511320:three_prime_UTR |
| AGAGAGTGGTCGCGGCTCGC+CGG | 0.499272 | 3_4:+60831991 | None:intergenic |
| GCCTATGGTGGTATGCAACC+TGG | 0.501903 | 3_4:-60830707 | Msa0511320:three_prime_UTR |
| GAACATGCTAAAGGTGATGC+TGG | 0.502172 | 3_4:-60830615 | Msa0511320:three_prime_UTR |
| GAATCCTTATAAGCCAATAA+GGG | 0.505222 | 3_4:+60829943 | None:intergenic |
| GATATACAACTGGTTAATGC+AGG | 0.505761 | 3_4:+60830227 | None:intergenic |
| AGCCCCTGGGGCTTTGACAG+TGG | 0.507837 | 3_4:+60830259 | None:intergenic |
| CAGGGTTCTTCAAAGCCCCT+GGG | 0.509672 | 3_4:+60830246 | None:intergenic |
| GATGAAAGAGAAAGGGAAGA+AGG | 0.513109 | 3_4:+60832086 | None:intergenic |
| ACAAAGCTTAGCCTCGTCCC+AGG | 0.517211 | 3_4:+60829893 | None:intergenic |
| TGAAACCTTTCTTGAAGGAA+TGG | 0.519707 | 3_4:-60830663 | Msa0511320:three_prime_UTR |
| GCTCGCCGGCGGTGGTGTGG+TGG | 0.523397 | 3_4:+60832005 | None:intergenic |
| TCCTTCAAGAAAGGTTTCAT+CGG | 0.524359 | 3_4:+60830667 | None:intergenic |
| TATACTTCCACCAAAACCAT+AGG | 0.528424 | 3_4:+60829815 | None:intergenic |
| TGAAGAATCGAAACAGAAGA+TGG | 0.529600 | 3_4:+60831937 | None:intergenic |
| CTCTATTAACCTTTGAAGGA+CGG | 0.532180 | 3_4:+60831496 | None:intergenic |
| AAATGATCCCCGTCCTTCAA+AGG | 0.533522 | 3_4:-60831505 | Msa0511320:intron |
| CTCGTAAGAGTTTGGTAGAT+AGG | 0.533723 | 3_4:+60830362 | None:intergenic |
| GTATGATTGTCATCATATCC+AGG | 0.540147 | 3_4:+60830689 | None:intergenic |
| AGATATTGAGGGCATAATGA+AGG | 0.541095 | 3_4:+60830417 | None:intergenic |
| TGCTGTTCAAAGTTAGAGGA+GGG | 0.542437 | 3_4:-60829741 | Msa0511320:three_prime_UTR |
| AAATGCTTCTGTAGTCGCCT+CGG | 0.545200 | 3_4:-60830201 | Msa0511320:three_prime_UTR |
| CTATTAACCTTTGAAGGACG+GGG | 0.548364 | 3_4:+60831498 | None:intergenic |
| TGAGAAATTGGAGTGCCCTA+TGG | 0.553196 | 3_4:-60829831 | Msa0511320:three_prime_UTR |
| ATCCACCACCACACCACCGC+CGG | 0.554325 | 3_4:-60832010 | Msa0511320:CDS |
| AAATGGAGAAAAGTAGCCTA+TGG | 0.557172 | 3_4:-60830722 | Msa0511320:three_prime_UTR |
| GCGGCGGTGACGGATGGAGA+AGG | 0.559053 | 3_4:+60831968 | None:intergenic |
| TTAGGATTAAGTTGATGGGA+AGG | 0.560136 | 3_4:-60829768 | Msa0511320:three_prime_UTR |
| GGAGAAGGAGAGAGTGGTCG+CGG | 0.563614 | 3_4:+60831983 | None:intergenic |
| TGGATTCTGAATAATCATGC+AGG | 0.568914 | 3_4:+60830279 | None:intergenic |
| GTGGTGGTGGATGTAAGGTT+CGG | 0.573274 | 3_4:+60832021 | None:intergenic |
| GTTCTCAGATGAAAGAGAAA+GGG | 0.575776 | 3_4:+60832079 | None:intergenic |
| GGGTATATGCAATTAAAGGT+AGG | 0.576748 | 3_4:+60830879 | None:intergenic |
| TGCAATTAAAGGTAGGAGGT+AGG | 0.581209 | 3_4:+60830886 | None:intergenic |
| GAGTGGTCGCGGCTCGCCGG+CGG | 0.582631 | 3_4:+60831994 | None:intergenic |
| AAAGCATATGTGTAAGCAGA+AGG | 0.584702 | 3_4:+60830067 | None:intergenic |
| GATCAATGGACCCTGGGACG+AGG | 0.585309 | 3_4:-60829904 | Msa0511320:three_prime_UTR |
| TTAATACAGTATGTAACCAG+TGG | 0.586025 | 3_4:+60830098 | None:intergenic |
| TTGCTGTTCAAAGTTAGAGG+AGG | 0.587504 | 3_4:-60829742 | Msa0511320:three_prime_UTR |
| TTTAGACGATTGGAAGACAA+TGG | 0.588598 | 3_4:-60830934 | Msa0511320:three_prime_UTR |
| TAATTAAGATTGAAAACATG+AGG | 0.595355 | 3_4:+60829606 | None:intergenic |
| TTATTTAATTCCAGATGCAA+CGG | 0.595595 | 3_4:+60830799 | None:intergenic |
| GTTTGAGATCAATGGACCCT+GGG | 0.600084 | 3_4:-60829910 | Msa0511320:three_prime_UTR |
| AGTTTGAGATCAATGGACCC+TGG | 0.600417 | 3_4:-60829911 | Msa0511320:three_prime_UTR |
| TATATGCAATTAAAGGTAGG+AGG | 0.601265 | 3_4:+60830882 | None:intergenic |
| TCCAGGTTGCATACCACCAT+AGG | 0.605048 | 3_4:+60830706 | None:intergenic |
| CTTAATCCTAAAACTAGACC+AGG | 0.605573 | 3_4:+60829780 | None:intergenic |
| ATCGAAACAGAAGATGGAGG+AGG | 0.605954 | 3_4:+60831943 | None:intergenic |
| ATACTTCCACCAAAACCATA+GGG | 0.611580 | 3_4:+60829816 | None:intergenic |
| AATCCACTGTCAAAGCCCCA+GGG | 0.616730 | 3_4:-60830262 | Msa0511320:three_prime_UTR |
| TTTCTCCATTTGGCTCGAGG+CGG | 0.617404 | 3_4:+60830734 | None:intergenic |
| CAAAGCTTAGCCTCGTCCCA+GGG | 0.620911 | 3_4:+60829894 | None:intergenic |
| CTGCAACGAGAATAACATGA+TGG | 0.622923 | 3_4:+60830136 | None:intergenic |
| GCGCCTAAAATCTCGCTCGA+CGG | 0.626202 | 3_4:-60833345 | Msa0511320:CDS |
| ACGGATGGAGAAGGAGAGAG+TGG | 0.641525 | 3_4:+60831977 | None:intergenic |
| AGTATAATTTACTCACTACC+TGG | 0.643620 | 3_4:-60829798 | Msa0511320:three_prime_UTR |
| CTATCTACCAAACTCTTACG+AGG | 0.647536 | 3_4:-60830361 | Msa0511320:three_prime_UTR |
| TGGAGAAAAGTAGCCTATGG+TGG | 0.650401 | 3_4:-60830719 | Msa0511320:three_prime_UTR |
| GAAGATGGAGGAGGATGCGG+CGG | 0.651585 | 3_4:+60831952 | None:intergenic |
| ATTAGGTAAATATACACCCA+TGG | 0.653298 | 3_4:+60829652 | None:intergenic |
| ATATACAACTGGTTAATGCA+GGG | 0.660347 | 3_4:+60830228 | None:intergenic |
| AGGGTTCTTCAAAGCCCCTG+GGG | 0.663398 | 3_4:+60830247 | None:intergenic |
| AGAATCGAAACAGAAGATGG+AGG | 0.690203 | 3_4:+60831940 | None:intergenic |
| TACAGACTGAAATCAGAACA+TGG | 0.698765 | 3_4:-60829862 | Msa0511320:three_prime_UTR |
| ATCCACTGTCAAAGCCCCAG+GGG | 0.705854 | 3_4:-60830261 | Msa0511320:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAAATTACATAAAA+AGG | + | chr3_4:60831923-60831942 | None:intergenic | 10.0% |
| !! | AATTAAATAAGTTATTGTAA+TGG | - | chr3_4:60832119-60832138 | Msa0511320:intron | 10.0% |
| !!! | ATTGTGGATTTTTTTTTTAT+CGG | - | chr3_4:60830043-60830062 | Msa0511320:three_prime_UTR | 15.0% |
| !!! | GTAGTATTAATTTTGTTTAA+TGG | + | chr3_4:60830335-60830354 | None:intergenic | 15.0% |
| !! | ATACAAACAAATAAATAAAG+AGG | + | chr3_4:60830677-60830696 | None:intergenic | 15.0% |
| !! | AATTAACAAAATATTATCAC+AGG | + | chr3_4:60831286-60831305 | None:intergenic | 15.0% |
| !!! | TATATTTTAGTGTATTTTGA+TGG | - | chr3_4:60831444-60831463 | Msa0511320:intron | 15.0% |
| !!! | TTTAGAATTTTATGTAATGA+AGG | - | chr3_4:60833213-60833232 | Msa0511320:intron | 15.0% |
| !! | GATGCCAAATATATATTATT+CGG | - | chr3_4:60829906-60829925 | Msa0511320:three_prime_UTR | 20.0% |
| !! | ATGCCAAATATATATTATTC+GGG | - | chr3_4:60829907-60829926 | Msa0511320:three_prime_UTR | 20.0% |
| !!! | TTTTAAGAAAAACTCGATTT+CGG | - | chr3_4:60830280-60830299 | Msa0511320:three_prime_UTR | 20.0% |
| !!! | ATGGAATTATTTTTGTGTAA+GGG | + | chr3_4:60830316-60830335 | None:intergenic | 20.0% |
| !!! | AATGGAATTATTTTTGTGTA+AGG | + | chr3_4:60830317-60830336 | None:intergenic | 20.0% |
| !! | AAATGAATTAAAGGAGAAAA+GGG | + | chr3_4:60830593-60830612 | None:intergenic | 20.0% |
| !! | AAAATGAATTAAAGGAGAAA+AGG | + | chr3_4:60830594-60830613 | None:intergenic | 20.0% |
| !! | ACGAAAAGAAAATGAATTAA+AGG | + | chr3_4:60830602-60830621 | None:intergenic | 20.0% |
| !! | AGTAAAATTACATAAAAAGG+AGG | + | chr3_4:60831920-60831939 | None:intergenic | 20.0% |
| !!! | TAATTTTACTTTTCACAGTT+TGG | - | chr3_4:60831930-60831949 | Msa0511320:exon | 20.0% |
| !! | TATGAAAAATGAGATATTGA+GGG | + | chr3_4:60832502-60832521 | None:intergenic | 20.0% |
| !! | TTATGAAAAATGAGATATTG+AGG | + | chr3_4:60832503-60832522 | None:intergenic | 20.0% |
| !!! | AATATCTCATTTTTCATAAC+TGG | - | chr3_4:60832504-60832523 | Msa0511320:intron | 20.0% |
| !! | TTTCTTTCTTCAAATCAATT+AGG | + | chr3_4:60833273-60833292 | None:intergenic | 20.0% |
| !! | TAATTAAGATTGAAAACATG+AGG | + | chr3_4:60833302-60833321 | None:intergenic | 20.0% |
| !!! | AAATGTTATACTGTTTTTAC+AGG | + | chr3_4:60833346-60833365 | None:intergenic | 20.0% |
| ! | TGCCAAATATATATTATTCG+GGG | - | chr3_4:60829908-60829927 | Msa0511320:three_prime_UTR | 25.0% |
| ! | ATCCCCGAATAATATATATT+TGG | + | chr3_4:60829913-60829932 | None:intergenic | 25.0% |
| ! | AAATATATATTATTCGGGGA+TGG | - | chr3_4:60829912-60829931 | Msa0511320:three_prime_UTR | 25.0% |
| ! | AATATATATTATTCGGGGAT+GGG | - | chr3_4:60829913-60829932 | Msa0511320:three_prime_UTR | 25.0% |
| !!! | TGGAATTATTTTTGTGTAAG+GGG | + | chr3_4:60830315-60830334 | None:intergenic | 25.0% |
| ! | TGTTTGTATGTATTTACTCA+TGG | - | chr3_4:60830688-60830707 | Msa0511320:three_prime_UTR | 25.0% |
| !! | TCACAAGTTGGAAATTTATT+AGG | - | chr3_4:60830723-60830742 | Msa0511320:three_prime_UTR | 25.0% |
| !!! | ATTGTTGCTATTGTTTTGTA+TGG | - | chr3_4:60830748-60830767 | Msa0511320:three_prime_UTR | 25.0% |
| !!! | TTGTTGCTATTGTTTTGTAT+GGG | - | chr3_4:60830749-60830768 | Msa0511320:three_prime_UTR | 25.0% |
| ! | GAATTCTGCAAATTAATGAA+GGG | + | chr3_4:60830783-60830802 | None:intergenic | 25.0% |
| ! | CTTACAAGTTACAACAAATA+GGG | + | chr3_4:60831029-60831048 | None:intergenic | 25.0% |
| ! | CAAATCAGAATCATAATTGA+AGG | + | chr3_4:60831076-60831095 | None:intergenic | 25.0% |
| !!! | ATTTTAGTGTATTTTGATGG+TGG | - | chr3_4:60831447-60831466 | Msa0511320:intron | 25.0% |
| !!! | TTTTAGTGTATTTTGATGGT+GGG | - | chr3_4:60831448-60831467 | Msa0511320:intron | 25.0% |
| ! | AAAACTAAGCTAATCCAAAT+GGG | - | chr3_4:60831543-60831562 | Msa0511320:three_prime_UTR | 25.0% |
| ! | TGTAAAGATCAAAACAAAGT+TGG | + | chr3_4:60831792-60831811 | None:intergenic | 25.0% |
| ! | TTGATCTAAATTTAGACGAT+TGG | - | chr3_4:60831961-60831980 | Msa0511320:CDS | 25.0% |
| !!! | CTTTAAAGCATCAAATCTTT+GGG | + | chr3_4:60832049-60832068 | None:intergenic | 25.0% |
| ! | TTATTTAATTCCAGATGCAA+CGG | + | chr3_4:60832109-60832128 | None:intergenic | 25.0% |
| !!! | TATTGTAATGGATGTCAAAA+TGG | - | chr3_4:60832131-60832150 | Msa0511320:intron | 25.0% |
| ! | AATGCATAGATATTCAGAAA+TGG | + | chr3_4:60832325-60832344 | None:intergenic | 25.0% |
| !! | AAAGCATTTCTTGAGTAAAA+AGG | + | chr3_4:60832455-60832474 | None:intergenic | 25.0% |
| !!! | CATAACTGGTTTATATGTTT+TGG | - | chr3_4:60832518-60832537 | Msa0511320:intron | 25.0% |
| !!! | ATGCTTTTCTATTAGTTTGA+TGG | - | chr3_4:60832854-60832873 | Msa0511320:intron | 25.0% |
| !! | GAATATAAGTTTGAGATCAA+TGG | - | chr3_4:60832987-60833006 | Msa0511320:intron | 25.0% |
| !! | ATGGTTATTTGTTGAGAAAT+TGG | - | chr3_4:60833062-60833081 | Msa0511320:intron | 25.0% |
| !!! | TAGTTTTAGGATTAAGTTGA+TGG | - | chr3_4:60833132-60833151 | Msa0511320:intron | 25.0% |
| !!! | AGTTTTAGGATTAAGTTGAT+GGG | - | chr3_4:60833133-60833152 | Msa0511320:intron | 25.0% |
| !! | AATGAAGGTTTCACAATTTT+AGG | - | chr3_4:60833228-60833247 | Msa0511320:intron | 25.0% |
| ATATATATTATTCGGGGATG+GGG | - | chr3_4:60829914-60829933 | Msa0511320:three_prime_UTR | 30.0% | |
| TTGTGGATAATTACTCATGT+TGG | - | chr3_4:60829985-60830004 | Msa0511320:three_prime_UTR | 30.0% | |
| ! | AAAAAAGTGGTATTGGAGAA+AGG | + | chr3_4:60830513-60830532 | None:intergenic | 30.0% |
| AATGCATGTTGCATTGAATT+TGG | + | chr3_4:60830552-60830571 | None:intergenic | 30.0% | |
| TCAGTTTCCAAATTCAAGAA+CGG | + | chr3_4:60830651-60830670 | None:intergenic | 30.0% | |
| GGAATTCTGCAAATTAATGA+AGG | + | chr3_4:60830784-60830803 | None:intergenic | 30.0% | |
| CCTTACAAGTTACAACAAAT+AGG | + | chr3_4:60831030-60831049 | None:intergenic | 30.0% | |
| !! | CCTATTTGTTGTAACTTGTA+AGG | - | chr3_4:60831027-60831046 | Msa0511320:intron | 30.0% |
| ATTACCCTAAAAACAACAGA+TGG | + | chr3_4:60831138-60831157 | None:intergenic | 30.0% | |
| !!! | GTTTTTAGGGTAATTTGTAG+CGG | - | chr3_4:60831144-60831163 | Msa0511320:intron | 30.0% |
| !!! | TTTTTAGGGTAATTTGTAGC+GGG | - | chr3_4:60831145-60831164 | Msa0511320:intron | 30.0% |
| ! | GGATCATTTTCTTCAATTCT+TGG | + | chr3_4:60831389-60831408 | None:intergenic | 30.0% |
| AGAACTCTATTAACCTTTGA+AGG | + | chr3_4:60831416-60831435 | None:intergenic | 30.0% | |
| TAGCTTATGCAAATAAACAG+TGG | + | chr3_4:60831509-60831528 | None:intergenic | 30.0% | |
| CAAAACTAAGCTAATCCAAA+TGG | - | chr3_4:60831542-60831561 | Msa0511320:three_prime_UTR | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr3_4:60831569-60831588 | None:intergenic | 30.0% | |
| ATTTGAGCTTATATCTCTAC+TGG | - | chr3_4:60831583-60831602 | Msa0511320:three_prime_UTR | 30.0% | |
| TATATGCAATTAAAGGTAGG+AGG | + | chr3_4:60832026-60832045 | None:intergenic | 30.0% | |
| CTTTGGGTATATGCAATTAA+AGG | + | chr3_4:60832033-60832052 | None:intergenic | 30.0% | |
| !! | CCTTTAAAGCATCAAATCTT+TGG | + | chr3_4:60832050-60832069 | None:intergenic | 30.0% |
| CCAAAGATTTGATGCTTTAA+AGG | - | chr3_4:60832047-60832066 | Msa0511320:CDS | 30.0% | |
| !! | TTGATGCTTTAAAGGACAAT+TGG | - | chr3_4:60832055-60832074 | Msa0511320:CDS | 30.0% |
| !! | TGATGCTTTAAAGGACAATT+GGG | - | chr3_4:60832056-60832075 | Msa0511320:CDS | 30.0% |
| TGAATGCTAGTGTTGTAAAA+AGG | - | chr3_4:60832268-60832287 | Msa0511320:intron | 30.0% | |
| TGTAAAAAGGAACATGCTAA+AGG | - | chr3_4:60832281-60832300 | Msa0511320:intron | 30.0% | |
| !! | CATTAGTTCTGATTCCATTT+GGG | - | chr3_4:60832569-60832588 | Msa0511320:intron | 30.0% |
| ATATACAACTGGTTAATGCA+GGG | + | chr3_4:60832680-60832699 | None:intergenic | 30.0% | |
| AGCATTTACAGATATACAAC+TGG | + | chr3_4:60832691-60832710 | None:intergenic | 30.0% | |
| TTAATACAGTATGTAACCAG+TGG | + | chr3_4:60832810-60832829 | None:intergenic | 30.0% | |
| GAATCCTTATAAGCCAATAA+GGG | + | chr3_4:60832965-60832984 | None:intergenic | 30.0% | |
| TGAATCCTTATAAGCCAATA+AGG | + | chr3_4:60832966-60832985 | None:intergenic | 30.0% | |
| !! | TTATTGGCTTATAAGGATTC+AGG | - | chr3_4:60832965-60832984 | Msa0511320:intron | 30.0% |
| AGTATAATTTACTCACTACC+TGG | - | chr3_4:60833107-60833126 | Msa0511320:intron | 30.0% | |
| !! | TTTCACAATTTTAGGTACCA+TGG | - | chr3_4:60833236-60833255 | Msa0511320:intron | 30.0% |
| !! | TTCACAATTTTAGGTACCAT+GGG | - | chr3_4:60833237-60833256 | Msa0511320:intron | 30.0% |
| ATTAGGTAAATATACACCCA+TGG | + | chr3_4:60833256-60833275 | None:intergenic | 30.0% | |
| TGTAAAGTCCCCTTATATAG+AGG | + | chr3_4:60829654-60829673 | None:intergenic | 35.0% | |
| TAAAGGCTTGAATGACTTTG+GGG | + | chr3_4:60829681-60829700 | None:intergenic | 35.0% | |
| CTAAAGGCTTGAATGACTTT+GGG | + | chr3_4:60829682-60829701 | None:intergenic | 35.0% | |
| ATCGTACTTGATCAGAATGA+TGG | + | chr3_4:60829780-60829799 | None:intergenic | 35.0% | |
| TCATTCTGATCAAGTACGAT+TGG | - | chr3_4:60829780-60829799 | Msa0511320:three_prime_UTR | 35.0% | |
| TAGAGTAGAAACCCACATTA+TGG | + | chr3_4:60830020-60830039 | None:intergenic | 35.0% | |
| GGTTTCTACTCTATCTATTG+TGG | - | chr3_4:60830027-60830046 | Msa0511320:three_prime_UTR | 35.0% | |
| TTGAGGAGTAACAGATAAGA+GGG | + | chr3_4:60830387-60830406 | None:intergenic | 35.0% | |
| ATTGAGGAGTAACAGATAAG+AGG | + | chr3_4:60830388-60830407 | None:intergenic | 35.0% | |
| AGCGACAAAAAAAGTGGTAT+TGG | + | chr3_4:60830520-60830539 | None:intergenic | 35.0% | |
| ATGAACAGCGACAAAAAAAG+TGG | + | chr3_4:60830526-60830545 | None:intergenic | 35.0% | |
| AATGTACCCGTTCTTGAATT+TGG | - | chr3_4:60830641-60830660 | Msa0511320:three_prime_UTR | 35.0% | |
| CAGTTTCCAAATTCAAGAAC+GGG | + | chr3_4:60830650-60830669 | None:intergenic | 35.0% | |
| AGAAGGAGATGAAACTGAAT+AGG | + | chr3_4:60830805-60830824 | None:intergenic | 35.0% | |
| GTTCTCAGATGAAAGAGAAA+GGG | + | chr3_4:60830829-60830848 | None:intergenic | 35.0% | |
| TGAAGAATCGAAACAGAAGA+TGG | + | chr3_4:60830971-60830990 | None:intergenic | 35.0% | |
| !!! | TCCTTCCATCTGTTGTTTTT+AGG | - | chr3_4:60831130-60831149 | Msa0511320:intron | 35.0% |
| !!! | CCTTCCATCTGTTGTTTTTA+GGG | - | chr3_4:60831131-60831150 | Msa0511320:intron | 35.0% |
| !! | CTCATGAACTTGTTAAGGTT+CGG | + | chr3_4:60831363-60831382 | None:intergenic | 35.0% |
| !! | GGATTCTCATGAACTTGTTA+AGG | + | chr3_4:60831368-60831387 | None:intergenic | 35.0% |
| ! | TCTATTAACCTTTGAAGGAC+GGG | + | chr3_4:60831411-60831430 | None:intergenic | 35.0% |
| ! | CTCTATTAACCTTTGAAGGA+CGG | + | chr3_4:60831412-60831431 | None:intergenic | 35.0% |
| CTTATGCAAATAAACAGTGG+CGG | + | chr3_4:60831506-60831525 | None:intergenic | 35.0% | |
| GCATATGCTATACACTATCT+TGG | + | chr3_4:60831671-60831690 | None:intergenic | 35.0% | |
| TAGCATAAGCGCTTATGTAT+AGG | + | chr3_4:60831736-60831755 | None:intergenic | 35.0% | |
| TTTAGACGATTGGAAGACAA+TGG | - | chr3_4:60831971-60831990 | Msa0511320:CDS | 35.0% | |
| GGGTATATGCAATTAAAGGT+AGG | + | chr3_4:60832029-60832048 | None:intergenic | 35.0% | |
| !!! | ATAGGCTACTTTTCTCCATT+TGG | + | chr3_4:60832184-60832203 | None:intergenic | 35.0% |
| AAATGGAGAAAAGTAGCCTA+TGG | - | chr3_4:60832183-60832202 | Msa0511320:intron | 35.0% | |
| GTATGATTGTCATCATATCC+AGG | + | chr3_4:60832219-60832238 | None:intergenic | 35.0% | |
| TCCTTCAAGAAAGGTTTCAT+CGG | + | chr3_4:60832241-60832260 | None:intergenic | 35.0% | |
| TGAAACCTTTCTTGAAGGAA+TGG | - | chr3_4:60832242-60832261 | Msa0511320:intron | 35.0% | |
| ! | AGATATTGAGGGCATAATGA+AGG | + | chr3_4:60832491-60832510 | None:intergenic | 35.0% |
| CCAAATGGAATCAGAACTAA+TGG | + | chr3_4:60832571-60832590 | None:intergenic | 35.0% | |
| !! | CCATTAGTTCTGATTCCATT+TGG | - | chr3_4:60832568-60832587 | Msa0511320:intron | 35.0% |
| CTGAATAATCATGCAGGAAA+AGG | + | chr3_4:60832623-60832642 | None:intergenic | 35.0% | |
| TGGATTCTGAATAATCATGC+AGG | + | chr3_4:60832629-60832648 | None:intergenic | 35.0% | |
| GATATACAACTGGTTAATGC+AGG | + | chr3_4:60832681-60832700 | None:intergenic | 35.0% | |
| AAAGCATATGTGTAAGCAGA+AGG | + | chr3_4:60832841-60832860 | None:intergenic | 35.0% | |
| CAGTGTGTACACAAAACTTA+AGG | + | chr3_4:60832886-60832905 | None:intergenic | 35.0% | |
| AACTAAGTAGCAGCACAAAT+AGG | + | chr3_4:60832917-60832936 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTCTTTGTCAACT+TGG | - | chr3_4:60832935-60832954 | Msa0511320:intron | 35.0% |
| !! | TTTGCCCTTATTGGCTTATA+AGG | - | chr3_4:60832958-60832977 | Msa0511320:intron | 35.0% |
| TACAGACTGAAATCAGAACA+TGG | - | chr3_4:60833043-60833062 | Msa0511320:intron | 35.0% | |
| ATACTTCCACCAAAACCATA+GGG | + | chr3_4:60833092-60833111 | None:intergenic | 35.0% | |
| TATACTTCCACCAAAACCAT+AGG | + | chr3_4:60833093-60833112 | None:intergenic | 35.0% | |
| CTTAATCCTAAAACTAGACC+AGG | + | chr3_4:60833128-60833147 | None:intergenic | 35.0% | |
| !! | TTAGGATTAAGTTGATGGGA+AGG | - | chr3_4:60833137-60833156 | Msa0511320:intron | 35.0% |
| !! | TTCTTGCTGTTCAAAGTTAG+AGG | - | chr3_4:60833160-60833179 | Msa0511320:intron | 35.0% |
| ATGCACGTCACCTCTATATA+AGG | - | chr3_4:60829641-60829660 | Msa0511320:three_prime_UTR | 40.0% | |
| TGCACGTCACCTCTATATAA+GGG | - | chr3_4:60829642-60829661 | Msa0511320:three_prime_UTR | 40.0% | |
| GCTAAAGGCTTGAATGACTT+TGG | + | chr3_4:60829683-60829702 | None:intergenic | 40.0% | |
| TGGTGCTTGTATCCATAATG+TGG | - | chr3_4:60830005-60830024 | Msa0511320:three_prime_UTR | 40.0% | |
| GGTGCTTGTATCCATAATGT+GGG | - | chr3_4:60830006-60830025 | Msa0511320:three_prime_UTR | 40.0% | |
| CTCAGATCGTTGTTAGGTTA+AGG | - | chr3_4:60830480-60830499 | Msa0511320:three_prime_UTR | 40.0% | |
| AGAGTGATGTGATCACAAGT+TGG | - | chr3_4:60830711-60830730 | Msa0511320:three_prime_UTR | 40.0% | |
| GATGAAAGAGAAAGGGAAGA+AGG | + | chr3_4:60830822-60830841 | None:intergenic | 40.0% | |
| CGTTCTCAGATGAAAGAGAA+AGG | + | chr3_4:60830830-60830849 | None:intergenic | 40.0% | |
| AGAATCGAAACAGAAGATGG+AGG | + | chr3_4:60830968-60830987 | None:intergenic | 40.0% | |
| ACAGATGGAAGGAAAACTCA+TGG | + | chr3_4:60831123-60831142 | None:intergenic | 40.0% | |
| CCCTAAAAACAACAGATGGA+AGG | + | chr3_4:60831134-60831153 | None:intergenic | 40.0% | |
| !!! | AGCGGGATTGTGTTGTTTTT+AGG | - | chr3_4:60831162-60831181 | Msa0511320:intron | 40.0% |
| !!! | GCGGGATTGTGTTGTTTTTA+GGG | - | chr3_4:60831163-60831182 | Msa0511320:intron | 40.0% |
| CGCTGGATATTACAAGCTTA+TGG | + | chr3_4:60831227-60831246 | None:intergenic | 40.0% | |
| ! | CTATTAACCTTTGAAGGACG+GGG | + | chr3_4:60831410-60831429 | None:intergenic | 40.0% |
| GAGCCAGACAAAAAAGTTTG+GGG | + | chr3_4:60831484-60831503 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | + | chr3_4:60831485-60831504 | None:intergenic | 40.0% | |
| ! | TCTACTGCTGCTTATTGTGT+TGG | - | chr3_4:60831881-60831900 | Msa0511320:three_prime_UTR | 40.0% |
| TGCAATTAAAGGTAGGAGGT+AGG | + | chr3_4:60832022-60832041 | None:intergenic | 40.0% | |
| ACCGATGAAACCTTTCTTGA+AGG | - | chr3_4:60832237-60832256 | Msa0511320:intron | 40.0% | |
| CATGACCATTCCTTCAAGAA+AGG | + | chr3_4:60832250-60832269 | None:intergenic | 40.0% | |
| ! | CATTGTTGCTCTTGTTGTCT+TGG | - | chr3_4:60832341-60832360 | Msa0511320:intron | 40.0% |
| GATGTAAGTCTTCTCGTTTC+AGG | - | chr3_4:60832417-60832436 | Msa0511320:intron | 40.0% | |
| CTCGTAAGAGTTTGGTAGAT+AGG | + | chr3_4:60832546-60832565 | None:intergenic | 40.0% | |
| CTATCTACCAAACTCTTACG+AGG | - | chr3_4:60832544-60832563 | Msa0511320:intron | 40.0% | |
| ! | TAATGGACCTCGTAAGAGTT+TGG | + | chr3_4:60832554-60832573 | None:intergenic | 40.0% |
| AGATACAGTTACTGCCCAAA+TGG | + | chr3_4:60832586-60832605 | None:intergenic | 40.0% | |
| ACGAGAAGCAATAAAAACCG+AGG | + | chr3_4:60832724-60832743 | None:intergenic | 40.0% | |
| ! | GCAAACACATGTAGTCTTGA+TGG | + | chr3_4:60832750-60832769 | None:intergenic | 40.0% |
| CTGCAACGAGAATAACATGA+TGG | + | chr3_4:60832772-60832791 | None:intergenic | 40.0% | |
| CATCATGTTATTCTCGTTGC+AGG | - | chr3_4:60832770-60832789 | Msa0511320:intron | 40.0% | |
| ATGTAACCAGTGGAGCAAAA+AGG | + | chr3_4:60832800-60832819 | None:intergenic | 40.0% | |
| !! | TGTGCTGCTACTTAGTTTGT+TGG | - | chr3_4:60832920-60832939 | Msa0511320:intron | 40.0% |
| !! | TCAACTTGGTTTGCCCTTAT+TGG | - | chr3_4:60832949-60832968 | Msa0511320:intron | 40.0% |
| !!! | TCACTACCTGGTCTAGTTTT+AGG | - | chr3_4:60833119-60833138 | Msa0511320:intron | 40.0% |
| ! | TTGCTGTTCAAAGTTAGAGG+AGG | - | chr3_4:60833163-60833182 | Msa0511320:intron | 40.0% |
| TGCTGTTCAAAGTTAGAGGA+GGG | - | chr3_4:60833164-60833183 | Msa0511320:intron | 40.0% | |
| ! | TAACCGTCGAGCGAGATTTT+AGG | + | chr3_4:60829566-60829585 | None:intergenic | 45.0% |
| CATTGTTAGTCGCACATCGT+TGG | + | chr3_4:60829617-60829636 | None:intergenic | 45.0% | |
| CAACGATGTGCGACTAACAA+TGG | - | chr3_4:60829615-60829634 | Msa0511320:three_prime_UTR | 45.0% | |
| GCACGTCACCTCTATATAAG+GGG | - | chr3_4:60829643-60829662 | Msa0511320:three_prime_UTR | 45.0% | |
| AGTAAGAGCAGAAGAACGAG+AGG | + | chr3_4:60829705-60829724 | None:intergenic | 45.0% | |
| !! | ATGGGGCATGATGGATAGTT+AGG | - | chr3_4:60829931-60829950 | Msa0511320:three_prime_UTR | 45.0% |
| CCACAAGAATGAACAGACGT+GGG | + | chr3_4:60829971-60829990 | None:intergenic | 45.0% | |
| TCCACAAGAATGAACAGACG+TGG | + | chr3_4:60829972-60829991 | None:intergenic | 45.0% | |
| TCAATCTCTGCCTCCATTTC+CGG | - | chr3_4:60830403-60830422 | Msa0511320:three_prime_UTR | 45.0% | |
| CCTAACAACGATCTGAGAGA+GGG | + | chr3_4:60830477-60830496 | None:intergenic | 45.0% | |
| ACCTAACAACGATCTGAGAG+AGG | + | chr3_4:60830478-60830497 | None:intergenic | 45.0% | |
| ATCGAAACAGAAGATGGAGG+AGG | + | chr3_4:60830965-60830984 | None:intergenic | 45.0% | |
| AAATGATCCCCGTCCTTCAA+AGG | - | chr3_4:60831400-60831419 | Msa0511320:intron | 45.0% | |
| !!! | GTATTTTGATGGTGGGATGC+CGG | - | chr3_4:60831455-60831474 | Msa0511320:intron | 45.0% |
| ! | ACAAAAAAGTTTGGGGTGGC+CGG | + | chr3_4:60831477-60831496 | None:intergenic | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | + | chr3_4:60831481-60831500 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | - | chr3_4:60831478-60831497 | Msa0511320:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | + | chr3_4:60831486-60831505 | None:intergenic | 45.0% | |
| CTAATCCAAATGGGCCTGTT+TGG | - | chr3_4:60831552-60831571 | Msa0511320:three_prime_UTR | 45.0% | |
| TCAATCCAAACAGGCCCATT+TGG | + | chr3_4:60831560-60831579 | None:intergenic | 45.0% | |
| GTATAAGCACCTGTGACACT+GGG | - | chr3_4:60831605-60831624 | Msa0511320:intron | 45.0% | |
| ATAAGTTCTCCCAGTGTCAC+AGG | + | chr3_4:60831617-60831636 | None:intergenic | 45.0% | |
| !! | ACTTTTCTCCATTTGGCTCG+AGG | + | chr3_4:60832177-60832196 | None:intergenic | 45.0% |
| TGGAGAAAAGTAGCCTATGG+TGG | - | chr3_4:60832186-60832205 | Msa0511320:intron | 45.0% | |
| GAACATGCTAAAGGTGATGC+TGG | - | chr3_4:60832290-60832309 | Msa0511320:intron | 45.0% | |
| ! | TTGCTCTTGTTGTCTTGGTC+TGG | - | chr3_4:60832346-60832365 | Msa0511320:intron | 45.0% |
| AAATGCTTCTGTAGTCGCCT+CGG | - | chr3_4:60832704-60832723 | Msa0511320:intron | 45.0% | |
| ! | GGTTTTCCTTTTTGCTCCAC+TGG | - | chr3_4:60832791-60832810 | Msa0511320:intron | 45.0% |
| ! | AGTTTGAGATCAATGGACCC+TGG | - | chr3_4:60832994-60833013 | Msa0511320:intron | 45.0% |
| ! | GTTTGAGATCAATGGACCCT+GGG | - | chr3_4:60832995-60833014 | Msa0511320:intron | 45.0% |
| ! | TGAGAAATTGGAGTGCCCTA+TGG | - | chr3_4:60833074-60833093 | Msa0511320:intron | 45.0% |
| !! | ATTGGAGTGCCCTATGGTTT+TGG | - | chr3_4:60833080-60833099 | Msa0511320:intron | 45.0% |
| ! | CGAGATTTTAGGCGCGTAGA+GGG | + | chr3_4:60829555-60829574 | None:intergenic | 50.0% |
| GCAGAAGAACGAGAGGCTAA+AGG | + | chr3_4:60829698-60829717 | None:intergenic | 50.0% | |
| ! | GAATGATGGTGCCCAGTGAA+CGG | + | chr3_4:60829766-60829785 | None:intergenic | 50.0% |
| CAGCTAGGTCAGATTGAAGC+AGG | + | chr3_4:60829880-60829899 | None:intergenic | 50.0% | |
| CTGCTTCAATCTGACCTAGC+TGG | - | chr3_4:60829878-60829897 | Msa0511320:three_prime_UTR | 50.0% | |
| AGAATGAACAGACGTGGGTG+CGG | + | chr3_4:60829966-60829985 | None:intergenic | 50.0% | |
| CCCACGTCTGTTCATTCTTG+TGG | - | chr3_4:60829968-60829987 | Msa0511320:three_prime_UTR | 50.0% | |
| GGAAATGGAGGCAGAGATTG+AGG | + | chr3_4:60830404-60830423 | None:intergenic | 50.0% | |
| CAGAGATAATCGCCGGAAGA+GGG | + | chr3_4:60830450-60830469 | None:intergenic | 50.0% | |
| ACAGAGATAATCGCCGGAAG+AGG | + | chr3_4:60830451-60830470 | None:intergenic | 50.0% | |
| GGGAACACAGAGATAATCGC+CGG | + | chr3_4:60830457-60830476 | None:intergenic | 50.0% | |
| CCCTCTCTCAGATCGTTGTT+AGG | - | chr3_4:60830474-60830493 | Msa0511320:three_prime_UTR | 50.0% | |
| ! | TAAGGTTCGGTCGCTTGCTT+TGG | + | chr3_4:60830874-60830893 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGATGTAAGGTT+CGG | + | chr3_4:60830887-60830906 | None:intergenic | 50.0% |
| ACAGAAGATGGAGGAGGATG+CGG | + | chr3_4:60830959-60830978 | None:intergenic | 50.0% | |
| TGTCACATTCTTTGCAGCGC+TGG | + | chr3_4:60831244-60831263 | None:intergenic | 50.0% | |
| GGTATAAGCACCTGTGACAC+TGG | - | chr3_4:60831604-60831623 | Msa0511320:intron | 50.0% | |
| TCTGATTCTGCCGTTGCATC+TGG | - | chr3_4:60832096-60832115 | Msa0511320:CDS | 50.0% | |
| ! | TTTCTCCATTTGGCTCGAGG+CGG | + | chr3_4:60832174-60832193 | None:intergenic | 50.0% |
| TCCAGGTTGCATACCACCAT+AGG | + | chr3_4:60832202-60832221 | None:intergenic | 50.0% | |
| AATCCACTGTCAAAGCCCCA+GGG | - | chr3_4:60832643-60832662 | Msa0511320:intron | 50.0% | |
| ! | GCGAGATTTTAGGCGCGTAG+AGG | + | chr3_4:60829556-60829575 | None:intergenic | 55.0% |
| GCGCCTAAAATCTCGCTCGA+CGG | - | chr3_4:60829560-60829579 | Msa0511320:three_prime_UTR | 55.0% | |
| ! | CTCGACGGTTACGGTTTTGC+AGG | + | chr3_4:60829594-60829613 | None:intergenic | 55.0% |
| !! | CATCGTTGGCTCGACGGTTA+CGG | + | chr3_4:60829603-60829622 | None:intergenic | 55.0% |
| TATACACTCCCGCCGTTCAC+TGG | - | chr3_4:60829751-60829770 | Msa0511320:three_prime_UTR | 55.0% | |
| ATACACTCCCGCCGTTCACT+GGG | - | chr3_4:60829752-60829771 | Msa0511320:three_prime_UTR | 55.0% | |
| TTTGGCATCGCTTGCCAGCT+AGG | + | chr3_4:60829895-60829914 | None:intergenic | 55.0% | |
| TATTCGGGGATGGGGCATGA+TGG | - | chr3_4:60829922-60829941 | Msa0511320:three_prime_UTR | 55.0% | |
| TTCGGTCGCTTGCTTTGGTC+GGG | + | chr3_4:60830869-60830888 | None:intergenic | 55.0% | |
| GTTCGGTCGCTTGCTTTGGT+CGG | + | chr3_4:60830870-60830889 | None:intergenic | 55.0% | |
| !! | GTGGTGTGGTGGTGGATGTA+AGG | + | chr3_4:60830892-60830911 | None:intergenic | 55.0% |
| ACGGATGGAGAAGGAGAGAG+TGG | + | chr3_4:60830931-60830950 | None:intergenic | 55.0% | |
| GCCTATGGTGGTATGCAACC+TGG | - | chr3_4:60832198-60832217 | Msa0511320:intron | 55.0% | |
| GAATCCACTGTCAAAGCCCC+AGG | - | chr3_4:60832642-60832661 | Msa0511320:intron | 55.0% | |
| ATCCACTGTCAAAGCCCCAG+GGG | - | chr3_4:60832644-60832663 | Msa0511320:intron | 55.0% | |
| AGGGTTCTTCAAAGCCCCTG+GGG | + | chr3_4:60832661-60832680 | None:intergenic | 55.0% | |
| CAGGGTTCTTCAAAGCCCCT+GGG | + | chr3_4:60832662-60832681 | None:intergenic | 55.0% | |
| CAAAGCTTAGCCTCGTCCCA+GGG | + | chr3_4:60833014-60833033 | None:intergenic | 55.0% | |
| ACAAAGCTTAGCCTCGTCCC+AGG | + | chr3_4:60833015-60833034 | None:intergenic | 55.0% | |
| !!! | GGAGTGCCCTATGGTTTTGG+TGG | - | chr3_4:60833083-60833102 | Msa0511320:intron | 55.0% |
| !! | GTCGCACATCGTTGGCTCGA+CGG | + | chr3_4:60829609-60829628 | None:intergenic | 60.0% |
| ! | TGATGGTGCCCAGTGAACGG+CGG | + | chr3_4:60829763-60829782 | None:intergenic | 60.0% |
| AAGAGGGAGAGAGAAGCGGC+GGG | + | chr3_4:60830434-60830453 | None:intergenic | 60.0% | |
| GAAGAGGGAGAGAGAAGCGG+CGG | + | chr3_4:60830435-60830454 | None:intergenic | 60.0% | |
| CCGGAAGAGGGAGAGAGAAG+CGG | + | chr3_4:60830438-60830457 | None:intergenic | 60.0% | |
| CCGCTTCTCTCTCCCTCTTC+CGG | - | chr3_4:60830435-60830454 | Msa0511320:three_prime_UTR | 60.0% | |
| GGAGAAGGAGAGAGTGGTCG+CGG | + | chr3_4:60830925-60830944 | None:intergenic | 60.0% | |
| GAAGATGGAGGAGGATGCGG+CGG | + | chr3_4:60830956-60830975 | None:intergenic | 60.0% | |
| CTTCTCCGCCTCGAGCCAAA+TGG | - | chr3_4:60832166-60832185 | Msa0511320:intron | 60.0% | |
| GCAGGGTTCTTCAAAGCCCC+TGG | + | chr3_4:60832663-60832682 | None:intergenic | 60.0% | |
| GATCAATGGACCCTGGGACG+AGG | - | chr3_4:60833001-60833020 | Msa0511320:intron | 60.0% | |
| GATGGTGCCCAGTGAACGGC+GGG | + | chr3_4:60829762-60829781 | None:intergenic | 65.0% | |
| ATCCACCACCACACCACCGC+CGG | - | chr3_4:60830895-60830914 | Msa0511320:three_prime_UTR | 65.0% | |
| ! | AGCCCCTGGGGCTTTGACAG+TGG | + | chr3_4:60832649-60832668 | None:intergenic | 65.0% |
| AGGGAGAGAGAAGCGGCGGG+CGG | + | chr3_4:60830431-60830450 | None:intergenic | 70.0% | |
| AGAGAGTGGTCGCGGCTCGC+CGG | + | chr3_4:60830917-60830936 | None:intergenic | 70.0% | |
| !! | GCGGCGGTGACGGATGGAGA+AGG | + | chr3_4:60830940-60830959 | None:intergenic | 70.0% |
| !! | GAGGATGCGGCGGTGACGGA+TGG | + | chr3_4:60830946-60830965 | None:intergenic | 70.0% |
| GGAGGAGGATGCGGCGGTGA+CGG | + | chr3_4:60830950-60830969 | None:intergenic | 70.0% | |
| ! | GCGGGCGGCACCGGAAATGG+AGG | + | chr3_4:60830416-60830435 | None:intergenic | 75.0% |
| AGAGAAGCGGCGGGCGGCAC+CGG | + | chr3_4:60830425-60830444 | None:intergenic | 75.0% | |
| !! | GCGGCGGGCGGCACCGGAAA+TGG | + | chr3_4:60830419-60830438 | None:intergenic | 80.0% |
| ! | CGCCGGCGGTGGTGTGGTGG+TGG | + | chr3_4:60830900-60830919 | None:intergenic | 80.0% |
| ! | GCTCGCCGGCGGTGGTGTGG+TGG | + | chr3_4:60830903-60830922 | None:intergenic | 80.0% |
| ! | GAGTGGTCGCGGCTCGCCGG+CGG | + | chr3_4:60830914-60830933 | None:intergenic | 80.0% |
| ! | GCGGCTCGCCGGCGGTGGTG+TGG | + | chr3_4:60830906-60830925 | None:intergenic | 85.0% |
| ! | TGGTCGCGGCTCGCCGGCGG+TGG | + | chr3_4:60830911-60830930 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 60829546 | 60833381 | 60829546 | ID=Msa0511320;Name=Msa0511320 |
| chr3_4 | mRNA | 60829546 | 60833381 | 60829546 | ID=Msa0511320-mRNA-1;Parent=Msa0511320;Name=Msa0511320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.75|0.75|0.33|0.25|4|1589|84 |
| chr3_4 | exon | 60829546 | 60830979 | 60829546 | ID=Msa0511320-mRNA-1:exon:14686;Parent=Msa0511320-mRNA-1 |
| chr3_4 | exon | 60831506 | 60831608 | 60831506 | ID=Msa0511320-mRNA-1:exon:14685;Parent=Msa0511320-mRNA-1 |
| chr3_4 | exon | 60831879 | 60832129 | 60831879 | ID=Msa0511320-mRNA-1:exon:14684;Parent=Msa0511320-mRNA-1 |
| chr3_4 | exon | 60833326 | 60833381 | 60833326 | ID=Msa0511320-mRNA-1:exon:14683;Parent=Msa0511320-mRNA-1 |
| chr3_4 | CDS | 60833326 | 60833381 | 60833326 | ID=Msa0511320-mRNA-1:cds;Parent=Msa0511320-mRNA-1 |
| chr3_4 | CDS | 60831931 | 60832129 | 60831931 | ID=Msa0511320-mRNA-1:cds;Parent=Msa0511320-mRNA-1 |
| chr3_4 | three_prime_UTR | 60831879 | 60831930 | 60831879 | ID=Msa0511320-mRNA-1:three_prime_utr;Parent=Msa0511320-mRNA-1 |
| chr3_4 | three_prime_UTR | 60831506 | 60831608 | 60831506 | ID=Msa0511320-mRNA-1:three_prime_utr;Parent=Msa0511320-mRNA-1 |
| chr3_4 | three_prime_UTR | 60829546 | 60830979 | 60829546 | ID=Msa0511320-mRNA-1:three_prime_utr;Parent=Msa0511320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
