AlfalfaGEDB | Msa0790390

M. sativa cultivar zhongmu-4 / Msa0790390

KEGG: K03083
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790390	AAN63591.1	99.769	433	0	1	1	433	1	432	0.0	900

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790390	sp\|Q39019\|KSG10_ARATH	84.065	433	57	4	1	433	1	421	0.0	765

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790390	Q8H6X8	99.769	433	0	1	1	433	1	432	0.0	900

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0790390	0.886041	4.829943e-72	-8.615850e-47
Msa0000550	Msa0790390	0.836742	7.831018e-57	-8.615850e-47
Msa0001790	Msa0790390	-0.832832	7.546642e-56	-8.615850e-47
Msa0001950	Msa0790390	-0.818536	1.862220e-52	-8.615850e-47
Msa0003470	Msa0790390	-0.814166	1.769261e-51	-8.615850e-47
Msa0004860	Msa0790390	-0.823795	1.142628e-53	-8.615850e-47
Msa0004920	Msa0790390	-0.829467	5.065219e-55	-8.615850e-47
Msa0006290	Msa0790390	-0.805633	1.214713e-49	-8.615850e-47
Msa0008410	Msa0790390	-0.806687	7.287670e-50	-8.615850e-47
Msa0008850	Msa0790390	-0.815669	8.211280e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0790390	MtrunA17_Chr2g0277011	98.614	433	1	2	1	433	1	428	0.0	885
Msa0790390	MtrunA17_Chr7g0270371	72.000	425	103	2	6	430	2	410	0.0	652
Msa0790390	MtrunA17_Chr1g0193081	79.412	374	77	0	58	431	38	411	0.0	648
Msa0790390	MtrunA17_Chr1g0194201	73.892	406	93	1	25	430	18	410	0.0	646
Msa0790390	MtrunA17_Chr8g0350311	68.496	419	124	3	5	423	57	467	0.0	615
Msa0790390	MtrunA17_Chr2g0320011	75.135	370	91	1	57	426	50	418	0.0	613
Msa0790390	MtrunA17_Chr7g0246591	67.883	411	126	1	13	423	65	469	0.0	610
Msa0790390	MtrunA17_Chr2g0284091	70.732	369	107	1	57	425	2	369	0.0	588
Msa0790390	MtrunA17_Chr4g0045841	35.154	293	173	8	101	384	61	345	4.02e-55	187
Msa0790390	MtrunA17_Chr1g0187371	34.828	290	179	5	101	382	24	311	4.72e-53	180

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0790390	AT1G09840.3	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.7	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.10	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.6	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.4	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.1	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.9	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.5	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.8	84.065	433	57	4	1	433	1	421	765
Msa0790390	AT1G09840.2	84.065	433	57	4	1	433	1	421	765

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Find 125 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCATCCATGGCACA+AGG	0.674504	5_3:-1171905	Msa0790390:intron
AAATTAAACAGCGGAGGCAA+TGG	0.491517	5_3:+1170630	None:intergenic
AAATTGCAGCCCTTGTTTCC+TGG	0.344987	5_3:-1172450	Msa0790390:intron
AACTTAAATTCAGTATAATT+TGG	0.096083	5_3:+1171937	None:intergenic
AAGCAGTTGATCTTGTCTGT+AGG	0.606047	5_3:-1170861	Msa0790390:CDS
AATCACATAGTTTCAGCTGA+TGG	0.546019	5_3:+1172793	None:intergenic
ACAAGATCAACTGCTTCTGG+AGG	0.664345	5_3:+1170868	None:intergenic
ACAAGCATTGCTGCACGAAA+CGG	0.523685	5_3:-1175185	Msa0790390:CDS
ACAGAATGTTAGTTATATTG+CGG	0.593159	5_3:-1175060	Msa0790390:intron
ACAGCAGTGCATCTCAAATT+AGG	0.301087	5_3:+1170823	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGAATGAAAAGGTAGGT+AGG	+	chr5_3:1169637-1169656	None:intergenic	30.0%
ACATAATATAAGAAGAGGAC+AGG	+	chr5_3:1170139-1170158	None:intergenic	30.0%
GTGAGGTTGAAAAAGAAAAA+CGG	+	chr5_3:1170164-1170183	None:intergenic	30.0%
CTTCCTTGTTAGTTAGATTT+GGG	-	chr5_3:1170623-1170642	Msa0790390:CDS	30.0%
ATTCCCAAATCTAACTAACA+AGG	+	chr5_3:1170629-1170648	None:intergenic	30.0%
TTGTTAGTTAGATTTGGGAA+TGG	-	chr5_3:1170628-1170647	Msa0790390:CDS	30.0%
GCAATTATGTATGTAAGCAA+GGG	+	chr5_3:1171117-1171136	None:intergenic	30.0%
TGCAATTATGTATGTAAGCA+AGG	+	chr5_3:1171118-1171137	None:intergenic	30.0%
GCTTACATACATAATTGCAT+TGG	-	chr5_3:1171119-1171138	Msa0790390:intron	30.0%
TAATAAACAAGCCCATTATG+AGG	+	chr5_3:1171242-1171261	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	1169471	1175793	1169471	ID=Msa0790390;Name=Msa0790390
chr5_3	mRNA	1169471	1175793	1169471	ID=Msa0790390-mRNA-1;Parent=Msa0790390;Name=Msa0790390-mRNA-1;_AED=0.19;_eAED=0.19;_QI=242\|1\|1\|1\|0.90\|0.83\|12\|285\|433
chr5_3	exon	1169471	1169844	1169471	ID=Msa0790390-mRNA-1:exon:422;Parent=Msa0790390-mRNA-1
chr5_3	exon	1170619	1170721	1170619	ID=Msa0790390-mRNA-1:exon:421;Parent=Msa0790390-mRNA-1
chr5_3	exon	1170825	1170908	1170825	ID=Msa0790390-mRNA-1:exon:420;Parent=Msa0790390-mRNA-1
chr5_3	exon	1171906	1172001	1171906	ID=Msa0790390-mRNA-1:exon:419;Parent=Msa0790390-mRNA-1
chr5_3	exon	1172413	1172463	1172413	ID=Msa0790390-mRNA-1:exon:418;Parent=Msa0790390-mRNA-1
chr5_3	exon	1172542	1172682	1172542	ID=Msa0790390-mRNA-1:exon:417;Parent=Msa0790390-mRNA-1
chr5_3	exon	1172773	1172829	1172773	ID=Msa0790390-mRNA-1:exon:416;Parent=Msa0790390-mRNA-1
chr5_3	exon	1174086	1174160	1174086	ID=Msa0790390-mRNA-1:exon:415;Parent=Msa0790390-mRNA-1
chr5_3	exon	1174653	1174925	1174653	ID=Msa0790390-mRNA-1:exon:414;Parent=Msa0790390-mRNA-1
chr5_3	exon	1175019	1175078	1175019	ID=Msa0790390-mRNA-1:exon:413;Parent=Msa0790390-mRNA-1
chr5_3	exon	1175172	1175526	1175172	ID=Msa0790390-mRNA-1:exon:412;Parent=Msa0790390-mRNA-1
chr5_3	exon	1175634	1175793	1175634	ID=Msa0790390-mRNA-1:exon:411;Parent=Msa0790390-mRNA-1
chr5_3	five_prime_UTR	1175634	1175793	1175634	ID=Msa0790390-mRNA-1:five_prime_utr;Parent=Msa0790390-mRNA-1
chr5_3	five_prime_UTR	1175445	1175526	1175445	ID=Msa0790390-mRNA-1:five_prime_utr;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1175172	1175444	1175172	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1175019	1175078	1175019	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1174653	1174925	1174653	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1174086	1174160	1174086	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1172773	1172829	1172773	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1172542	1172682	1172542	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1172413	1172463	1172413	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1171906	1172001	1171906	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1170825	1170908	1170825	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1170619	1170721	1170619	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	CDS	1169756	1169844	1169756	ID=Msa0790390-mRNA-1:cds;Parent=Msa0790390-mRNA-1
chr5_3	three_prime_UTR	1169471	1169755	1169471	ID=Msa0790390-mRNA-1:three_prime_utr;Parent=Msa0790390-mRNA-1

Gene Sequence

>Msa0790390

ATGGCGTCTGCTAGCCTTGGAAATGGCGGTATTGGCAGCAGTTCAAGGTCTGCTGCTGCCTTGAGAGCTGCTTCTTCCACTTCTTCCTCCGTCGATTGGCTTGGCAGAGAGATGCTTCACATGAACCTCAATCGTGATCATGACCATGACCATGACGACGACGACGACGATGATGCCAGAGAGAGTGAGCCTGACATCATTGATGGTGTTGGTGCTGAAACTGGACATGTTATACGAACAAGCATTGCTGCACGAAACGGTCAATCTAAGCAGAATGTTAGTTATATTGCGGAACACGTAGTTGGGACAGGCTCTTTCGGAACTGTTTTTCAAGCTAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAACAGAGAGTTACAGATTATGCAAATGCTCGACCATCCAAATATTGTCGCCCTCAGGCATTGTTTCTTTTCAACCACTGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACCGTCAATCGTATTGCAAGAAACTATAGCAGGATTAACCAACGAATGCCTTTGATATACGTGAAACTTTATACGTACCAGATATGCAGGGCCCTTGCTTACATACATAATTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGCTGGTGAAAGGAGAACCTAATGTTTCATATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGCCAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATTAAGGTTTTGGGAACTCCTACCAGGGAGGAGATTAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGCTTGCCTCCAGAAGCAGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCCTTCTTTGATGAATTAAGGGACCCAAACACCCGCCTTCCCAATGGTCGTCCATTGCCTCCGCTGTTTAATTTTAAACCCCAGGAACTTTCTGGTATTCCACCTGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAATTTATTTATGGCTTTGCACACCTAG

Protein sequence

>Msa0790390

MASASLGNGGIGSSSRSAAALRAASSTSSSVDWLGREMLHMNLNRDHDHDHDDDDDDDARESEPDIIDGVGAETGHVIRTSIAARNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT*