Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1171770 | 0.847675 | 9.952947e-60 | -8.615850e-47 |
| Msa0000940 | Msa1171770 | -0.801048 | 1.081987e-48 | -8.615850e-47 |
| Msa0027580 | Msa1171770 | -0.810671 | 1.026563e-50 | -8.615850e-47 |
| Msa0032840 | Msa1171770 | 0.816816 | 4.550579e-52 | -8.615850e-47 |
| Msa0036370 | Msa1171770 | -0.804113 | 2.524585e-49 | -8.615850e-47 |
| Msa0075340 | Msa1171770 | -0.811318 | 7.432880e-51 | -8.615850e-47 |
| Msa0078000 | Msa1171770 | 0.849452 | 3.204520e-60 | -8.615850e-47 |
| Msa0090030 | Msa1171770 | -0.807250 | 5.539900e-50 | -8.615850e-47 |
| Msa0094010 | Msa1171770 | -0.829027 | 6.474544e-55 | -8.615850e-47 |
| Msa0095380 | Msa1171770 | -0.805111 | 1.562738e-49 | -8.615850e-47 |
| Msa0114540 | Msa1171770 | 0.809507 | 1.828596e-50 | -8.615850e-47 |
| Msa0607290 | Msa1171770 | 0.838485 | 2.796976e-57 | -8.615850e-47 |
| Msa0609970 | Msa1171770 | -0.839196 | 1.830723e-57 | -8.615850e-47 |
| Msa0625790 | Msa1171770 | -0.802501 | 5.445428e-49 | -8.615850e-47 |
| Msa0638690 | Msa1171770 | -0.801618 | 8.270984e-49 | -8.615850e-47 |
| Msa0639120 | Msa1171770 | -0.830564 | 2.735511e-55 | -8.615850e-47 |
| Msa0648640 | Msa1171770 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
| Msa0650620 | Msa1171770 | -0.817349 | 3.454171e-52 | -8.615850e-47 |
| Msa0659140 | Msa1171770 | -0.811210 | 7.845676e-51 | -8.615850e-47 |
| Msa0663900 | Msa1171770 | -0.823431 | 1.390525e-53 | -8.615850e-47 |
| Msa0664960 | Msa1171770 | -0.802342 | 5.871211e-49 | -8.615850e-47 |
| Msa0669850 | Msa1171770 | -0.816011 | 6.890008e-52 | -8.615850e-47 |
| Msa0705600 | Msa1171770 | -0.805915 | 1.060025e-49 | -8.615850e-47 |
| Msa0707390 | Msa1171770 | -0.847038 | 1.489109e-59 | -8.615850e-47 |
| Msa0711490 | Msa1171770 | -0.802070 | 6.678950e-49 | -8.615850e-47 |
| Msa0712310 | Msa1171770 | -0.843726 | 1.173737e-58 | -8.615850e-47 |
| Msa0752620 | Msa1171770 | -0.821975 | 3.033848e-53 | -8.615850e-47 |
| Msa0755340 | Msa1171770 | -0.848383 | 6.348726e-60 | -8.615850e-47 |
| Msa0775260 | Msa1171770 | -0.810172 | 1.315389e-50 | -8.615850e-47 |
| Msa0790390 | Msa1171770 | 0.831991 | 1.219454e-55 | -8.615850e-47 |
| Msa0792090 | Msa1171770 | -0.800204 | 1.608641e-48 | -8.615850e-47 |
| Msa0795010 | Msa1171770 | -0.810868 | 9.307790e-51 | -8.615850e-47 |
| Msa0795030 | Msa1171770 | -0.826022 | 3.406404e-54 | -8.615850e-47 |
| Msa0797750 | Msa1171770 | -0.808195 | 3.489854e-50 | -8.615850e-47 |
| Msa0814250 | Msa1171770 | -0.814072 | 1.856095e-51 | -8.615850e-47 |
| Msa0820530 | Msa1171770 | 0.829442 | 5.136582e-55 | -8.615850e-47 |
| Msa0830990 | Msa1171770 | -0.842829 | 2.036189e-58 | -8.615850e-47 |
| Msa0140520 | Msa1171770 | 0.802408 | 5.691646e-49 | -8.615850e-47 |
| Msa0143080 | Msa1171770 | -0.833376 | 5.526267e-56 | -8.615850e-47 |
| Msa0143240 | Msa1171770 | 0.809851 | 1.542474e-50 | -8.615850e-47 |
| Msa0145950 | Msa1171770 | -0.817997 | 2.466341e-52 | -8.615850e-47 |
| Msa0170560 | Msa1171770 | 0.839733 | 1.328145e-57 | -8.615850e-47 |
| Msa0183460 | Msa1171770 | -0.812784 | 3.561115e-51 | -8.615850e-47 |
| Msa0188680 | Msa1171770 | 0.815423 | 9.316782e-52 | -8.615850e-47 |
| Msa0194970 | Msa1171770 | -0.805717 | 1.166303e-49 | -8.615850e-47 |
| Msa0212750 | Msa1171770 | 0.817322 | 3.501844e-52 | -8.615850e-47 |
| Msa0219250 | Msa1171770 | 0.828084 | 1.094161e-54 | -8.615850e-47 |
| Msa0222920 | Msa1171770 | -0.808481 | 3.032800e-50 | -8.615850e-47 |
| Msa0223290 | Msa1171770 | -0.802066 | 6.690908e-49 | -8.615850e-47 |
| Msa0227310 | Msa1171770 | 0.814172 | 1.763509e-51 | -8.615850e-47 |
| Msa0230550 | Msa1171770 | 0.808827 | 2.557713e-50 | -8.615850e-47 |
| Msa0236980 | Msa1171770 | -0.846123 | 2.646588e-59 | -8.615850e-47 |
| Msa0370160 | Msa1171770 | 0.816924 | 4.302862e-52 | -8.615850e-47 |
| Msa0377530 | Msa1171770 | -0.802201 | 6.277193e-49 | -8.615850e-47 |
| Msa0380040 | Msa1171770 | -0.815010 | 1.150934e-51 | -8.615850e-47 |
| Msa0392940 | Msa1171770 | -0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0403190 | Msa1171770 | -0.804673 | 1.929295e-49 | -8.615850e-47 |
| Msa0419640 | Msa1171770 | 0.809246 | 2.079944e-50 | -8.615850e-47 |
| Msa0420000 | Msa1171770 | -0.816140 | 6.446723e-52 | -8.615850e-47 |
| Msa0426810 | Msa1171770 | -0.807313 | 5.372257e-50 | -8.615850e-47 |
| Msa0429290 | Msa1171770 | -0.805812 | 1.114218e-49 | -8.615850e-47 |
| Msa0437690 | Msa1171770 | 0.819767 | 9.771555e-53 | -8.615850e-47 |
| Msa0440130 | Msa1171770 | 0.819181 | 1.329005e-52 | -8.615850e-47 |
| Msa0449820 | Msa1171770 | -0.825640 | 4.199477e-54 | -8.615850e-47 |
| Msa0465480 | Msa1171770 | 0.883946 | 2.915989e-71 | -8.615850e-47 |
| Msa0469910 | Msa1171770 | 0.856233 | 3.694966e-62 | -8.615850e-47 |
| Msa0480320 | Msa1171770 | -0.803871 | 2.834387e-49 | -8.615850e-47 |
| Msa0993530 | Msa1171770 | -0.801778 | 7.668993e-49 | -8.615850e-47 |
| Msa1015060 | Msa1171770 | -0.816241 | 6.119181e-52 | -8.615850e-47 |
| Msa1028470 | Msa1171770 | 0.809806 | 1.577507e-50 | -8.615850e-47 |
| Msa1069660 | Msa1171770 | 0.852480 | 4.491406e-61 | -8.615850e-47 |
| Msa1073400 | Msa1171770 | -0.809478 | 1.854970e-50 | -8.615850e-47 |
| Msa1089840 | Msa1171770 | -0.804814 | 1.802786e-49 | -8.615850e-47 |
| Msa1098720 | Msa1171770 | 0.833078 | 6.556706e-56 | -8.615850e-47 |
| Msa0258880 | Msa1171770 | 0.821707 | 3.498225e-53 | -8.615850e-47 |
| Msa0266210 | Msa1171770 | -0.809560 | 1.781283e-50 | -8.615850e-47 |
| Msa0270220 | Msa1171770 | 0.822264 | 2.599493e-53 | -8.615850e-47 |
| Msa0275400 | Msa1171770 | 0.833800 | 4.331977e-56 | -8.615850e-47 |
| Msa0287670 | Msa1171770 | -0.803823 | 2.900848e-49 | -8.615850e-47 |
| Msa0302650 | Msa1171770 | -0.833143 | 6.315948e-56 | -8.615850e-47 |
| Msa0307830 | Msa1171770 | 0.819831 | 9.446813e-53 | -8.615850e-47 |
| Msa0328210 | Msa1171770 | -0.860206 | 2.427356e-63 | -8.615850e-47 |
| Msa1111700 | Msa1171770 | -0.809307 | 2.018976e-50 | -8.615850e-47 |
| Msa1126120 | Msa1171770 | 0.857278 | 1.819612e-62 | -8.615850e-47 |
| Msa1130210 | Msa1171770 | 0.818216 | 2.200365e-52 | -8.615850e-47 |
| Msa1171770 | Msa1179020 | 0.808911 | 2.454316e-50 | -8.615850e-47 |
| Msa1171770 | Msa1182640 | -0.802568 | 5.275580e-49 | -8.615850e-47 |
| Msa1171770 | Msa1184370 | -0.800604 | 1.333410e-48 | -8.615850e-47 |
| Msa1171770 | Msa1193950 | 0.866109 | 3.626175e-65 | -8.615850e-47 |
| Msa1171770 | Msa1201830 | -0.801557 | 8.512828e-49 | -8.615850e-47 |
| Msa1171770 | Msa1211000 | -0.818758 | 1.658578e-52 | -8.615850e-47 |
| Msa1171770 | Msa1211050 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
| Msa1171770 | Msa1219110 | -0.807301 | 5.404634e-50 | -8.615850e-47 |
| Msa1171770 | Msa1235630 | -0.804101 | 2.539554e-49 | -8.615850e-47 |
| Msa1171770 | Msa1236070 | 0.810065 | 1.387150e-50 | -8.615850e-47 |
| Msa1171770 | Msa1237030 | -0.813635 | 2.316229e-51 | -8.615850e-47 |
| Msa1171770 | Msa1246530 | 0.851943 | 6.382517e-61 | -8.615850e-47 |
| Msa1171770 | Msa1259400 | -0.812943 | 3.287188e-51 | -8.615850e-47 |
| Msa1171770 | Msa1291350 | -0.803047 | 4.199152e-49 | -8.615850e-47 |
| Msa1171770 | Msa1294840 | -0.803614 | 3.204785e-49 | -8.615850e-47 |
| Msa1171770 | Msa1299360 | -0.817383 | 3.393728e-52 | -8.615850e-47 |
| Msa1171770 | Msa1310690 | -0.811364 | 7.266334e-51 | -8.615850e-47 |
| Msa1171770 | Msa1327760 | -0.809241 | 2.085018e-50 | -8.615850e-47 |
| Msa1171770 | Msa1344850 | -0.803526 | 3.343243e-49 | -8.615850e-47 |
| Msa1171770 | Msa1350690 | -0.802688 | 4.982982e-49 | -8.615850e-47 |
| Msa1171770 | Msa1362510 | -0.807520 | 4.856198e-50 | -8.615850e-47 |
| Msa1171770 | Msa1365150 | -0.845479 | 3.958736e-59 | -8.615850e-47 |
| Msa1171770 | Msa1367880 | -0.833469 | 5.239514e-56 | -8.615850e-47 |
| Msa1171770 | Msa1373510 | -0.823152 | 1.615130e-53 | -8.615850e-47 |
| Msa1171770 | Msa1373880 | -0.804712 | 1.894224e-49 | -8.615850e-47 |
| Msa1171770 | Msa1382310 | -0.802076 | 6.659066e-49 | -8.615850e-47 |
| Msa1171770 | Msa1397940 | -0.814124 | 1.807316e-51 | -8.615850e-47 |
| Msa1171770 | Msa1398860 | -0.803162 | 3.976301e-49 | -8.615850e-47 |
| Msa1171770 | Msa1403580 | 0.840924 | 6.484716e-58 | -8.615850e-47 |
| Msa1171770 | Msa1403930 | 0.830332 | 3.116816e-55 | -8.615850e-47 |
| Msa1171770 | Msa1438640 | -0.850920 | 1.242958e-60 | -8.615850e-47 |
| Msa1171770 | Msa1442220 | 0.829996 | 3.765267e-55 | -8.615850e-47 |
| Msa1171770 | Msa1443290 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa1171770 | Msa1452470 | -0.811950 | 5.416002e-51 | -8.615850e-47 |
| Msa1171770 | Msa1456650 | -0.821731 | 3.453930e-53 | -8.615850e-47 |
| Msa0493920 | Msa1171770 | -0.812293 | 4.560609e-51 | -8.615850e-47 |
| Msa0505060 | Msa1171770 | -0.817928 | 2.556548e-52 | -8.615850e-47 |
| Msa0509950 | Msa1171770 | 0.814081 | 1.846927e-51 | -8.615850e-47 |
| Msa0511320 | Msa1171770 | 0.874840 | 4.929626e-68 | -8.615850e-47 |
| Msa0519220 | Msa1171770 | -0.806539 | 7.833578e-50 | -8.615850e-47 |
| Msa0525340 | Msa1171770 | -0.820626 | 6.211428e-53 | -8.615850e-47 |
| Msa0554180 | Msa1171770 | 0.808583 | 2.884466e-50 | -8.615850e-47 |
| Msa0560470 | Msa1171770 | -0.837942 | 3.859228e-57 | -8.615850e-47 |
| Msa0578090 | Msa1171770 | -0.812968 | 3.245745e-51 | -8.615850e-47 |
| Msa0590680 | Msa1171770 | -0.804534 | 2.062667e-49 | -8.615850e-47 |
| Msa0591060 | Msa1171770 | -0.809130 | 2.202597e-50 | -8.615850e-47 |
| Msa0591770 | Msa1171770 | -0.818376 | 2.025024e-52 | -8.615850e-47 |
| Msa0852730 | Msa1171770 | -0.815470 | 9.093828e-52 | -8.615850e-47 |
| Msa0874570 | Msa1171770 | -0.812346 | 4.439224e-51 | -8.615850e-47 |
| Msa0900630 | Msa1171770 | -0.817187 | 3.755848e-52 | -8.615850e-47 |
| Msa0901160 | Msa1171770 | 0.808061 | 3.726658e-50 | -8.615850e-47 |
| Msa0903330 | Msa1171770 | -0.806107 | 9.658583e-50 | -8.615850e-47 |
| Msa0926460 | Msa1171770 | -0.803421 | 3.513666e-49 | -8.615850e-47 |
| Msa0942730 | Msa1171770 | -0.804936 | 1.700074e-49 | -8.615850e-47 |
| Msa0957450 | Msa1171770 | 0.834364 | 3.128602e-56 | -8.615850e-47 |
| Msa0958020 | Msa1171770 | -0.803730 | 3.032193e-49 | -8.615850e-47 |
| Msa0966720 | Msa1171770 | 0.847690 | 9.858081e-60 | -8.615850e-47 |
| Msa0974810 | Msa1171770 | -0.801915 | 7.185799e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171770 | MtrunA17_Chr3g0094731 | 87.097 | 31 | 4 | 0 | 64 | 94 | 2 | 32 | 1.98e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 138 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTTGGTTTGCCCTTAT+TGG | 0.113834 | 8_1:+1696511 | Msa1171770:three_prime_UTR |
| CCAAAGATTTGATGCTTTAA+AGG | 0.137745 | 8_1:+1695609 | Msa1171770:exon |
| CATAACTGGTTTATATGTTT+TGG | 0.181603 | 8_1:+1696080 | Msa1171770:three_prime_UTR |
| TCAATCTCTGCCTCCATTTC+CGG | 0.200373 | 8_1:+1693966 | Msa1171770:CDS |
| GATGTAAGTCTTCTCGTTTC+AGG | 0.212723 | 8_1:+1695979 | Msa1171770:three_prime_UTR |
| CCTTTAAAGCATCAAATCTT+TGG | 0.214941 | 8_1:-1695609 | None:intergenic |
| TTTGCCCTTATTGGCTTATA+AGG | 0.252639 | 8_1:+1696520 | Msa1171770:three_prime_UTR |
| TTTCTTTCTTCAAATCAATT+AGG | 0.258499 | 8_1:-1696832 | None:intergenic |
| TTATTGGCTTATAAGGATTC+AGG | 0.266337 | 8_1:+1696527 | Msa1171770:three_prime_UTR |
| TGAATCCTTATAAGCCAATA+AGG | 0.269795 | 8_1:-1696525 | None:intergenic |
| AAAGCATTTCTTGAGTAAAA+AGG | 0.276516 | 8_1:-1696014 | None:intergenic |
| CTTTGGGTATATGCAATTAA+AGG | 0.278656 | 8_1:-1695592 | None:intergenic |
| CCTTACAAGTTACAACAAAT+AGG | 0.282293 | 8_1:-1694589 | None:intergenic |
| ATGGTTATTTGTTGAGAAAT+TGG | 0.286770 | 8_1:+1696624 | Msa1171770:three_prime_UTR |
| TGTGCTGCTACTTAGTTTGT+TGG | 0.298882 | 8_1:+1696482 | Msa1171770:three_prime_UTR |
| GCGGCGGGCGGCACCGGAAA+TGG | 0.300903 | 8_1:-1693979 | None:intergenic |
| CTCAGATCGTTGTTAGGTTA+AGG | 0.312433 | 8_1:+1694043 | Msa1171770:CDS |
| TTCTTGCTGTTCAAAGTTAG+AGG | 0.315918 | 8_1:+1696722 | Msa1171770:three_prime_UTR |
| TTGCTCTTGTTGTCTTGGTC+TGG | 0.321036 | 8_1:+1695908 | Msa1171770:three_prime_UTR |
| AGAGAAGCGGCGGGCGGCAC+CGG | 0.324219 | 8_1:-1693985 | None:intergenic |
| CATCATGTTATTCTCGTTGC+AGG | 0.326129 | 8_1:+1696332 | Msa1171770:three_prime_UTR |
| CATTGTTGCTCTTGTTGTCT+TGG | 0.328685 | 8_1:+1695903 | Msa1171770:three_prime_UTR |
| CTTACAAGTTACAACAAATA+GGG | 0.340146 | 8_1:-1694588 | None:intergenic |
| TTGATGCTTTAAAGGACAAT+TGG | 0.341171 | 8_1:+1695617 | Msa1171770:exon |
| CTTTAAAGCATCAAATCTTT+GGG | 0.343852 | 8_1:-1695608 | None:intergenic |
| CCATTAGTTCTGATTCCATT+TGG | 0.350172 | 8_1:+1696130 | Msa1171770:three_prime_UTR |
| TAAGGTTCGGTCGCTTGCTT+TGG | 0.353148 | 8_1:-1694434 | None:intergenic |
| CCTATTTGTTGTAACTTGTA+AGG | 0.353633 | 8_1:+1694589 | Msa1171770:CDS |
| ATTGGAGTGCCCTATGGTTT+TGG | 0.356794 | 8_1:+1696642 | Msa1171770:three_prime_UTR |
| TCTGATTCTGCCGTTGCATC+TGG | 0.359311 | 8_1:+1695658 | Msa1171770:three_prime_UTR |
| CCCTCTCTCAGATCGTTGTT+AGG | 0.372410 | 8_1:+1694037 | Msa1171770:CDS |
| CATTAGTTCTGATTCCATTT+GGG | 0.372702 | 8_1:+1696131 | Msa1171770:three_prime_UTR |
| TATTGTAATGGATGTCAAAA+TGG | 0.373197 | 8_1:+1695693 | Msa1171770:three_prime_UTR |
| ACCGATGAAACCTTTCTTGA+AGG | 0.377730 | 8_1:+1695799 | Msa1171770:three_prime_UTR |
| TGAATGCTAGTGTTGTAAAA+AGG | 0.384855 | 8_1:+1695830 | Msa1171770:three_prime_UTR |
| CGCCGGCGGTGGTGTGGTGG+TGG | 0.392155 | 8_1:-1694460 | None:intergenic |
| TTGAGGAGTAACAGATAAGA+GGG | 0.401120 | 8_1:-1693947 | None:intergenic |
| ATTGAGGAGTAACAGATAAG+AGG | 0.403291 | 8_1:-1693948 | None:intergenic |
| CATGACCATTCCTTCAAGAA+AGG | 0.407072 | 8_1:-1695809 | None:intergenic |
| ATGTAACCAGTGGAGCAAAA+AGG | 0.410867 | 8_1:-1696359 | None:intergenic |
| TTTGTTGGTCTTTGTCAACT+TGG | 0.414907 | 8_1:+1696497 | Msa1171770:three_prime_UTR |
| TAATGGACCTCGTAAGAGTT+TGG | 0.421250 | 8_1:-1696113 | None:intergenic |
| GCAAACACATGTAGTCTTGA+TGG | 0.423869 | 8_1:-1696309 | None:intergenic |
| CTGAATAATCATGCAGGAAA+AGG | 0.430468 | 8_1:-1696182 | None:intergenic |
| CCGCTTCTCTCTCCCTCTTC+CGG | 0.430738 | 8_1:+1693998 | Msa1171770:CDS |
| GTGGTGTGGTGGTGGATGTA+AGG | 0.435643 | 8_1:-1694452 | None:intergenic |
| TTGATCTAAATTTAGACGAT+TGG | 0.435971 | 8_1:+1695523 | Msa1171770:CDS |
| TTCGGTCGCTTGCTTTGGTC+GGG | 0.441888 | 8_1:-1694429 | None:intergenic |
| GTTCGGTCGCTTGCTTTGGT+CGG | 0.444976 | 8_1:-1694430 | None:intergenic |
| TGATGCTTTAAAGGACAATT+GGG | 0.445203 | 8_1:+1695618 | Msa1171770:exon |
| CCAAATGGAATCAGAACTAA+TGG | 0.447172 | 8_1:-1696130 | None:intergenic |
| AATTAAATAAGTTATTGTAA+TGG | 0.447242 | 8_1:+1695681 | Msa1171770:three_prime_UTR |
| AGAAGGAGATGAAACTGAAT+AGG | 0.450844 | 8_1:-1694365 | None:intergenic |
| TGGTCGCGGCTCGCCGGCGG+TGG | 0.462159 | 8_1:-1694471 | None:intergenic |
| GCAGGGTTCTTCAAAGCCCC+TGG | 0.463363 | 8_1:-1696222 | None:intergenic |
| AATGCATAGATATTCAGAAA+TGG | 0.466377 | 8_1:-1695884 | None:intergenic |
| AGCATTTACAGATATACAAC+TGG | 0.476097 | 8_1:-1696250 | None:intergenic |
| AGATACAGTTACTGCCCAAA+TGG | 0.476656 | 8_1:-1696145 | None:intergenic |
| CAGTGTGTACACAAAACTTA+AGG | 0.477379 | 8_1:-1696445 | None:intergenic |
| CTTCTCCGCCTCGAGCCAAA+TGG | 0.488538 | 8_1:+1695728 | Msa1171770:three_prime_UTR |
| GAATCCACTGTCAAAGCCCC+AGG | 0.489514 | 8_1:+1696204 | Msa1171770:three_prime_UTR |
| CGTTCTCAGATGAAAGAGAA+AGG | 0.497516 | 8_1:-1694390 | None:intergenic |
| GCGGCTCGCCGGCGGTGGTG+TGG | 0.498620 | 8_1:-1694466 | None:intergenic |
| GAATATAAGTTTGAGATCAA+TGG | 0.499009 | 8_1:+1696549 | Msa1171770:three_prime_UTR |
| AGAGAGTGGTCGCGGCTCGC+CGG | 0.499272 | 8_1:-1694477 | None:intergenic |
| GCCTATGGTGGTATGCAACC+TGG | 0.501903 | 8_1:+1695760 | Msa1171770:three_prime_UTR |
| GAACATGCTAAAGGTGATGC+TGG | 0.502172 | 8_1:+1695852 | Msa1171770:three_prime_UTR |
| GAATCCTTATAAGCCAATAA+GGG | 0.505222 | 8_1:-1696524 | None:intergenic |
| GATATACAACTGGTTAATGC+AGG | 0.505761 | 8_1:-1696240 | None:intergenic |
| AGCCCCTGGGGCTTTGACAG+TGG | 0.507837 | 8_1:-1696208 | None:intergenic |
| CAGGGTTCTTCAAAGCCCCT+GGG | 0.509672 | 8_1:-1696221 | None:intergenic |
| GATGAAAGAGAAAGGGAAGA+AGG | 0.513109 | 8_1:-1694382 | None:intergenic |
| GGAGTAGGATGCGGCGGTGA+CGG | 0.516011 | 8_1:-1694509 | None:intergenic |
| ACAAAGCTTAGCCTCGTCCC+AGG | 0.517211 | 8_1:-1696574 | None:intergenic |
| ACAGAGGTAATCGCCGGAAG+AGG | 0.519134 | 8_1:-1694011 | None:intergenic |
| TGAAACCTTTCTTGAAGGAA+TGG | 0.519707 | 8_1:+1695804 | Msa1171770:three_prime_UTR |
| GCTCGCCGGCGGTGGTGTGG+TGG | 0.523397 | 8_1:-1694463 | None:intergenic |
| TCCTTCAAGAAAGGTTTCAT+CGG | 0.524359 | 8_1:-1695800 | None:intergenic |
| GGAAATGGAGGCAGAGATTG+AGG | 0.527436 | 8_1:-1693964 | None:intergenic |
| TATACTTCCACCAAAACCAT+AGG | 0.528424 | 8_1:-1696652 | None:intergenic |
| TGAAGAATCGAAACAGAAGA+TGG | 0.530010 | 8_1:-1694530 | None:intergenic |
| TAGGATGCGGCGGTGACGGA+TGG | 0.530865 | 8_1:-1694505 | None:intergenic |
| AAGAGGGAGAGAGAAGCGGC+GGG | 0.533281 | 8_1:-1693994 | None:intergenic |
| CTCGTAAGAGTTTGGTAGAT+AGG | 0.533723 | 8_1:-1696105 | None:intergenic |
| GCGGGCGGCACCGGAAATGG+AGG | 0.536841 | 8_1:-1693976 | None:intergenic |
| GTATGATTGTCATCATATCC+AGG | 0.540147 | 8_1:-1695778 | None:intergenic |
| AGATATTGAGGGCATAATGA+AGG | 0.541095 | 8_1:-1696050 | None:intergenic |
| TGCTGTTCAAAGTTAGAGGA+GGG | 0.542437 | 8_1:+1696726 | Msa1171770:three_prime_UTR |
| AAATGCTTCTGTAGTCGCCT+CGG | 0.545200 | 8_1:+1696266 | Msa1171770:three_prime_UTR |
| GAAGAGGGAGAGAGAAGCGG+CGG | 0.547894 | 8_1:-1693995 | None:intergenic |
| TGAGAAATTGGAGTGCCCTA+TGG | 0.553196 | 8_1:+1696636 | Msa1171770:three_prime_UTR |
| ATCCACCACCACACCACCGC+CGG | 0.554325 | 8_1:+1694458 | Msa1171770:CDS |
| TGCGGCGGTGACGGATGGAA+AGG | 0.554826 | 8_1:-1694500 | None:intergenic |
| AAATGGAGAAAAGTAGCCTA+TGG | 0.557172 | 8_1:+1695745 | Msa1171770:three_prime_UTR |
| TTAGGATTAAGTTGATGGGA+AGG | 0.560136 | 8_1:+1696699 | Msa1171770:three_prime_UTR |
| TGGATTCTGAATAATCATGC+AGG | 0.568914 | 8_1:-1696188 | None:intergenic |
| CAGAGGTAATCGCCGGAAGA+GGG | 0.570916 | 8_1:-1694010 | None:intergenic |
| GTGGTGGTGGATGTAAGGTT+CGG | 0.573274 | 8_1:-1694447 | None:intergenic |
| GTTCTCAGATGAAAGAGAAA+GGG | 0.575776 | 8_1:-1694389 | None:intergenic |
| GGGTATATGCAATTAAAGGT+AGG | 0.576748 | 8_1:-1695588 | None:intergenic |
| TGCAATTAAAGGTAGGAGGT+AGG | 0.581209 | 8_1:-1695581 | None:intergenic |
| GAGTGGTCGCGGCTCGCCGG+CGG | 0.582631 | 8_1:-1694474 | None:intergenic |
| AGGGAGAGAGAAGCGGCGGG+CGG | 0.584521 | 8_1:-1693991 | None:intergenic |
| AAAGCATATGTGTAAGCAGA+AGG | 0.584702 | 8_1:-1696400 | None:intergenic |
| GATCAATGGACCCTGGGACG+AGG | 0.585309 | 8_1:+1696563 | Msa1171770:three_prime_UTR |
| TTAATACAGTATGTAACCAG+TGG | 0.586025 | 8_1:-1696369 | None:intergenic |
| TTGCTGTTCAAAGTTAGAGG+AGG | 0.587504 | 8_1:+1696725 | Msa1171770:three_prime_UTR |
| TTTAGACGATTGGAAGACAA+TGG | 0.588598 | 8_1:+1695533 | Msa1171770:CDS |
| TGGAAAGGAGAGAGTGGTCG+CGG | 0.593298 | 8_1:-1694485 | None:intergenic |
| TAATTAAGATTGAAAACATG+AGG | 0.595355 | 8_1:-1696861 | None:intergenic |
| TTATTTAATTCCAGATGCAA+CGG | 0.595595 | 8_1:-1695668 | None:intergenic |
| CCGGAAGAGGGAGAGAGAAG+CGG | 0.598353 | 8_1:-1693998 | None:intergenic |
| ACAGAAGATGGAGTAGGATG+CGG | 0.598733 | 8_1:-1694518 | None:intergenic |
| GTTTGAGATCAATGGACCCT+GGG | 0.600084 | 8_1:+1696557 | Msa1171770:three_prime_UTR |
| AGTTTGAGATCAATGGACCC+TGG | 0.600417 | 8_1:+1696556 | Msa1171770:three_prime_UTR |
| TATATGCAATTAAAGGTAGG+AGG | 0.601265 | 8_1:-1695585 | None:intergenic |
| TCCAGGTTGCATACCACCAT+AGG | 0.605048 | 8_1:-1695761 | None:intergenic |
| CTTAATCCTAAAACTAGACC+AGG | 0.605573 | 8_1:-1696687 | None:intergenic |
| ACCTAACAACGATCTGAGAG+AGG | 0.609167 | 8_1:-1694038 | None:intergenic |
| ATACTTCCACCAAAACCATA+GGG | 0.611580 | 8_1:-1696651 | None:intergenic |
| AATCCACTGTCAAAGCCCCA+GGG | 0.616730 | 8_1:+1696205 | Msa1171770:three_prime_UTR |
| GGGAACACAGAGGTAATCGC+CGG | 0.617254 | 8_1:-1694017 | None:intergenic |
| TTTCTCCATTTGGCTCGAGG+CGG | 0.617404 | 8_1:-1695733 | None:intergenic |
| CAAAGCTTAGCCTCGTCCCA+GGG | 0.620911 | 8_1:-1696573 | None:intergenic |
| CTGCAACGAGAATAACATGA+TGG | 0.622923 | 8_1:-1696331 | None:intergenic |
| CCTAACAACGATCTGAGAGA+GGG | 0.640920 | 8_1:-1694037 | None:intergenic |
| GACGGATGGAAAGGAGAGAG+TGG | 0.640972 | 8_1:-1694491 | None:intergenic |
| ATCGAAACAGAAGATGGAGT+AGG | 0.642445 | 8_1:-1694524 | None:intergenic |
| AGTATAATTTACTCACTACC+TGG | 0.643620 | 8_1:+1696669 | Msa1171770:three_prime_UTR |
| CTATCTACCAAACTCTTACG+AGG | 0.647536 | 8_1:+1696106 | Msa1171770:three_prime_UTR |
| TGGAGAAAAGTAGCCTATGG+TGG | 0.650401 | 8_1:+1695748 | Msa1171770:three_prime_UTR |
| ATTAGGTAAATATACACCCA+TGG | 0.653298 | 8_1:-1696815 | None:intergenic |
| GAAGATGGAGTAGGATGCGG+CGG | 0.656692 | 8_1:-1694515 | None:intergenic |
| ATATACAACTGGTTAATGCA+GGG | 0.660347 | 8_1:-1696239 | None:intergenic |
| AGGGTTCTTCAAAGCCCCTG+GGG | 0.663398 | 8_1:-1696220 | None:intergenic |
| TACAGACTGAAATCAGAACA+TGG | 0.698765 | 8_1:+1696605 | Msa1171770:three_prime_UTR |
| ATCCACTGTCAAAGCCCCAG+GGG | 0.705854 | 8_1:+1696206 | Msa1171770:three_prime_UTR |
| ATCTGAGAGAGGGAACACAG+AGG | 0.785629 | 8_1:-1694027 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGTAAAATTACATAAAA+AGG | - | chr8_1:1695485-1695504 | None:intergenic | 10.0% |
| !! | AATTAAATAAGTTATTGTAA+TGG | + | chr8_1:1695681-1695700 | Msa1171770:three_prime_UTR | 10.0% |
| !! | ATACAAACAAATAAATAAAG+AGG | - | chr8_1:1694240-1694259 | None:intergenic | 15.0% |
| !! | AATTAACAAAATATTATCAC+AGG | - | chr8_1:1694848-1694867 | None:intergenic | 15.0% |
| !!! | TATATTTTAGTGTATTTTGA+TGG | + | chr8_1:1695006-1695025 | Msa1171770:intron | 15.0% |
| !!! | TTTAGAATTTTATGTAATGA+AGG | + | chr8_1:1696775-1696794 | Msa1171770:three_prime_UTR | 15.0% |
| !! | AAATGAATTAAAGGAGAAAA+GGG | - | chr8_1:1694156-1694175 | None:intergenic | 20.0% |
| !! | AAAATGAATTAAAGGAGAAA+AGG | - | chr8_1:1694157-1694176 | None:intergenic | 20.0% |
| !! | ACGAAAAGAAAATGAATTAA+AGG | - | chr8_1:1694165-1694184 | None:intergenic | 20.0% |
| !! | AGTAAAATTACATAAAAAGG+AGG | - | chr8_1:1695482-1695501 | None:intergenic | 20.0% |
| !!! | TAATTTTACTTTTCACAGTT+CGG | + | chr8_1:1695492-1695511 | Msa1171770:intron | 20.0% |
| !! | TATGAAAAATGAGATATTGA+GGG | - | chr8_1:1696064-1696083 | None:intergenic | 20.0% |
| !! | TTATGAAAAATGAGATATTG+AGG | - | chr8_1:1696065-1696084 | None:intergenic | 20.0% |
| !!! | AATATCTCATTTTTCATAAC+TGG | + | chr8_1:1696066-1696085 | Msa1171770:three_prime_UTR | 20.0% |
| !! | TTTCTTTCTTCAAATCAATT+AGG | - | chr8_1:1696835-1696854 | None:intergenic | 20.0% |
| !! | TAATTAAGATTGAAAACATG+AGG | - | chr8_1:1696864-1696883 | None:intergenic | 20.0% |
| !!! | AAATGTTATACTGTTTTTAC+AGG | - | chr8_1:1696908-1696927 | None:intergenic | 20.0% |
| ! | TGTTTGTATGTATTTACTCA+TGG | + | chr8_1:1694251-1694270 | Msa1171770:intron | 25.0% |
| !! | TCACAAGTTGGAAATTTATT+AGG | + | chr8_1:1694286-1694305 | Msa1171770:intron | 25.0% |
| !!! | ATTGTTGCTATTGTTTTGTA+TGG | + | chr8_1:1694311-1694330 | Msa1171770:intron | 25.0% |
| !!! | TTGTTGCTATTGTTTTGTAT+GGG | + | chr8_1:1694312-1694331 | Msa1171770:intron | 25.0% |
| ! | GAATTCTGCAAATTAATGAA+GGG | - | chr8_1:1694346-1694365 | None:intergenic | 25.0% |
| ! | CTTACAAGTTACAACAAATA+GGG | - | chr8_1:1694591-1694610 | None:intergenic | 25.0% |
| ! | CAAATCAGAATCATAATTGA+AGG | - | chr8_1:1694638-1694657 | None:intergenic | 25.0% |
| !!! | ATTTTAGTGTATTTTGATGG+TGG | + | chr8_1:1695009-1695028 | Msa1171770:intron | 25.0% |
| !!! | TTTTAGTGTATTTTGATGGT+GGG | + | chr8_1:1695010-1695029 | Msa1171770:intron | 25.0% |
| ! | TGTAAAGATCAAAACAAAGT+TGG | - | chr8_1:1695354-1695373 | None:intergenic | 25.0% |
| ! | TTGATCTAAATTTAGACGAT+TGG | + | chr8_1:1695523-1695542 | Msa1171770:CDS | 25.0% |
| !!! | CTTTAAAGCATCAAATCTTT+GGG | - | chr8_1:1695611-1695630 | None:intergenic | 25.0% |
| ! | TTATTTAATTCCAGATGCAA+CGG | - | chr8_1:1695671-1695690 | None:intergenic | 25.0% |
| !!! | TATTGTAATGGATGTCAAAA+TGG | + | chr8_1:1695693-1695712 | Msa1171770:three_prime_UTR | 25.0% |
| ! | AATGCATAGATATTCAGAAA+TGG | - | chr8_1:1695887-1695906 | None:intergenic | 25.0% |
| !! | AAAGCATTTCTTGAGTAAAA+AGG | - | chr8_1:1696017-1696036 | None:intergenic | 25.0% |
| !!! | CATAACTGGTTTATATGTTT+TGG | + | chr8_1:1696080-1696099 | Msa1171770:three_prime_UTR | 25.0% |
| !!! | ATGCTTTTCTATTAGTTTGA+TGG | + | chr8_1:1696416-1696435 | Msa1171770:three_prime_UTR | 25.0% |
| !! | GAATATAAGTTTGAGATCAA+TGG | + | chr8_1:1696549-1696568 | Msa1171770:three_prime_UTR | 25.0% |
| !! | ATGGTTATTTGTTGAGAAAT+TGG | + | chr8_1:1696624-1696643 | Msa1171770:three_prime_UTR | 25.0% |
| !!! | TAGTTTTAGGATTAAGTTGA+TGG | + | chr8_1:1696694-1696713 | Msa1171770:three_prime_UTR | 25.0% |
| !!! | AGTTTTAGGATTAAGTTGAT+GGG | + | chr8_1:1696695-1696714 | Msa1171770:three_prime_UTR | 25.0% |
| !! | AATGAAGGTTTCACAATTTT+AGG | + | chr8_1:1696790-1696809 | Msa1171770:three_prime_UTR | 25.0% |
| ! | AAAAAAGTGGTATTGGAGAA+AGG | - | chr8_1:1694076-1694095 | None:intergenic | 30.0% |
| AATGCATGTTGCATTGAATT+TGG | - | chr8_1:1694115-1694134 | None:intergenic | 30.0% | |
| TCAGTTTCCAAATTCAAGAA+CGG | - | chr8_1:1694214-1694233 | None:intergenic | 30.0% | |
| GGAATTCTGCAAATTAATGA+AGG | - | chr8_1:1694347-1694366 | None:intergenic | 30.0% | |
| CCTTACAAGTTACAACAAAT+AGG | - | chr8_1:1694592-1694611 | None:intergenic | 30.0% | |
| !! | CCTATTTGTTGTAACTTGTA+AGG | + | chr8_1:1694589-1694608 | Msa1171770:CDS | 30.0% |
| ATTACCCTAAAAACAACAGA+TGG | - | chr8_1:1694700-1694719 | None:intergenic | 30.0% | |
| !!! | GTTTTTAGGGTAATTTGTAG+CGG | + | chr8_1:1694706-1694725 | Msa1171770:intron | 30.0% |
| !!! | TTTTTAGGGTAATTTGTAGC+GGG | + | chr8_1:1694707-1694726 | Msa1171770:intron | 30.0% |
| ! | GGATCATTTTCTTCAATTCT+TGG | - | chr8_1:1694951-1694970 | None:intergenic | 30.0% |
| ! | TCTATTAACCTTTGAAGGAT+GGG | - | chr8_1:1694973-1694992 | None:intergenic | 30.0% |
| AGAACTCTATTAACCTTTGA+AGG | - | chr8_1:1694978-1694997 | None:intergenic | 30.0% | |
| TAGCTTATGCAAATAAACAG+TGG | - | chr8_1:1695071-1695090 | None:intergenic | 30.0% | |
| AAAACCAAGCTAATCCAAAT+GGG | + | chr8_1:1695105-1695124 | Msa1171770:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr8_1:1695131-1695150 | None:intergenic | 30.0% | |
| ATTTGAGCTTATATCTCTAC+TGG | + | chr8_1:1695145-1695164 | Msa1171770:intron | 30.0% | |
| TATATGCAATTAAAGGTAGG+AGG | - | chr8_1:1695588-1695607 | None:intergenic | 30.0% | |
| CTTTGGGTATATGCAATTAA+AGG | - | chr8_1:1695595-1695614 | None:intergenic | 30.0% | |
| !! | CCTTTAAAGCATCAAATCTT+TGG | - | chr8_1:1695612-1695631 | None:intergenic | 30.0% |
| CCAAAGATTTGATGCTTTAA+AGG | + | chr8_1:1695609-1695628 | Msa1171770:exon | 30.0% | |
| !! | TTGATGCTTTAAAGGACAAT+TGG | + | chr8_1:1695617-1695636 | Msa1171770:exon | 30.0% |
| !! | TGATGCTTTAAAGGACAATT+GGG | + | chr8_1:1695618-1695637 | Msa1171770:exon | 30.0% |
| TGAATGCTAGTGTTGTAAAA+AGG | + | chr8_1:1695830-1695849 | Msa1171770:three_prime_UTR | 30.0% | |
| TGTAAAAAGGAACATGCTAA+AGG | + | chr8_1:1695843-1695862 | Msa1171770:three_prime_UTR | 30.0% | |
| !! | CATTAGTTCTGATTCCATTT+GGG | + | chr8_1:1696131-1696150 | Msa1171770:three_prime_UTR | 30.0% |
| ATATACAACTGGTTAATGCA+GGG | - | chr8_1:1696242-1696261 | None:intergenic | 30.0% | |
| AGCATTTACAGATATACAAC+TGG | - | chr8_1:1696253-1696272 | None:intergenic | 30.0% | |
| TTAATACAGTATGTAACCAG+TGG | - | chr8_1:1696372-1696391 | None:intergenic | 30.0% | |
| GAATCCTTATAAGCCAATAA+GGG | - | chr8_1:1696527-1696546 | None:intergenic | 30.0% | |
| TGAATCCTTATAAGCCAATA+AGG | - | chr8_1:1696528-1696547 | None:intergenic | 30.0% | |
| !! | TTATTGGCTTATAAGGATTC+AGG | + | chr8_1:1696527-1696546 | Msa1171770:three_prime_UTR | 30.0% |
| AGTATAATTTACTCACTACC+TGG | + | chr8_1:1696669-1696688 | Msa1171770:three_prime_UTR | 30.0% | |
| !! | TTTCACAATTTTAGGTACCA+TGG | + | chr8_1:1696798-1696817 | Msa1171770:three_prime_UTR | 30.0% |
| !! | TTCACAATTTTAGGTACCAT+GGG | + | chr8_1:1696799-1696818 | Msa1171770:three_prime_UTR | 30.0% |
| ATTAGGTAAATATACACCCA+TGG | - | chr8_1:1696818-1696837 | None:intergenic | 30.0% | |
| TTGAGGAGTAACAGATAAGA+GGG | - | chr8_1:1693950-1693969 | None:intergenic | 35.0% | |
| ATTGAGGAGTAACAGATAAG+AGG | - | chr8_1:1693951-1693970 | None:intergenic | 35.0% | |
| AGCGACAAAAAAAGTGGTAT+TGG | - | chr8_1:1694083-1694102 | None:intergenic | 35.0% | |
| ATGAACAGCGACAAAAAAAG+TGG | - | chr8_1:1694089-1694108 | None:intergenic | 35.0% | |
| AATGTACCCGTTCTTGAATT+TGG | + | chr8_1:1694204-1694223 | Msa1171770:intron | 35.0% | |
| CAGTTTCCAAATTCAAGAAC+GGG | - | chr8_1:1694213-1694232 | None:intergenic | 35.0% | |
| AGAAGGAGATGAAACTGAAT+AGG | - | chr8_1:1694368-1694387 | None:intergenic | 35.0% | |
| GTTCTCAGATGAAAGAGAAA+GGG | - | chr8_1:1694392-1694411 | None:intergenic | 35.0% | |
| TGAAGAATCGAAACAGAAGA+TGG | - | chr8_1:1694533-1694552 | None:intergenic | 35.0% | |
| !!! | TCCTTCCATCTGTTGTTTTT+AGG | + | chr8_1:1694692-1694711 | Msa1171770:intron | 35.0% |
| !!! | CCTTCCATCTGTTGTTTTTA+GGG | + | chr8_1:1694693-1694712 | Msa1171770:intron | 35.0% |
| !! | CTCATGAACTTGTTAAGGTT+CGG | - | chr8_1:1694925-1694944 | None:intergenic | 35.0% |
| !! | GGATTCTCATGAACTTGTTA+AGG | - | chr8_1:1694930-1694949 | None:intergenic | 35.0% |
| ! | CTATTAACCTTTGAAGGATG+GGG | - | chr8_1:1694972-1694991 | None:intergenic | 35.0% |
| ! | CTCTATTAACCTTTGAAGGA+TGG | - | chr8_1:1694974-1694993 | None:intergenic | 35.0% |
| CTTATGCAAATAAACAGTGG+CGG | - | chr8_1:1695068-1695087 | None:intergenic | 35.0% | |
| CAAAACCAAGCTAATCCAAA+TGG | + | chr8_1:1695104-1695123 | Msa1171770:intron | 35.0% | |
| GCATATGCTATACACTATCT+TGG | - | chr8_1:1695233-1695252 | None:intergenic | 35.0% | |
| TAGCATAAGCGCTTATGTAT+AGG | - | chr8_1:1695298-1695317 | None:intergenic | 35.0% | |
| TTTAGACGATTGGAAGACAA+TGG | + | chr8_1:1695533-1695552 | Msa1171770:CDS | 35.0% | |
| GGGTATATGCAATTAAAGGT+AGG | - | chr8_1:1695591-1695610 | None:intergenic | 35.0% | |
| !!! | ATAGGCTACTTTTCTCCATT+TGG | - | chr8_1:1695746-1695765 | None:intergenic | 35.0% |
| AAATGGAGAAAAGTAGCCTA+TGG | + | chr8_1:1695745-1695764 | Msa1171770:three_prime_UTR | 35.0% | |
| GTATGATTGTCATCATATCC+AGG | - | chr8_1:1695781-1695800 | None:intergenic | 35.0% | |
| TCCTTCAAGAAAGGTTTCAT+CGG | - | chr8_1:1695803-1695822 | None:intergenic | 35.0% | |
| TGAAACCTTTCTTGAAGGAA+TGG | + | chr8_1:1695804-1695823 | Msa1171770:three_prime_UTR | 35.0% | |
| ! | AGATATTGAGGGCATAATGA+AGG | - | chr8_1:1696053-1696072 | None:intergenic | 35.0% |
| CCAAATGGAATCAGAACTAA+TGG | - | chr8_1:1696133-1696152 | None:intergenic | 35.0% | |
| !! | CCATTAGTTCTGATTCCATT+TGG | + | chr8_1:1696130-1696149 | Msa1171770:three_prime_UTR | 35.0% |
| CTGAATAATCATGCAGGAAA+AGG | - | chr8_1:1696185-1696204 | None:intergenic | 35.0% | |
| TGGATTCTGAATAATCATGC+AGG | - | chr8_1:1696191-1696210 | None:intergenic | 35.0% | |
| GATATACAACTGGTTAATGC+AGG | - | chr8_1:1696243-1696262 | None:intergenic | 35.0% | |
| AAAGCATATGTGTAAGCAGA+AGG | - | chr8_1:1696403-1696422 | None:intergenic | 35.0% | |
| CAGTGTGTACACAAAACTTA+AGG | - | chr8_1:1696448-1696467 | None:intergenic | 35.0% | |
| !! | TTTGTTGGTCTTTGTCAACT+TGG | + | chr8_1:1696497-1696516 | Msa1171770:three_prime_UTR | 35.0% |
| !! | TTTGCCCTTATTGGCTTATA+AGG | + | chr8_1:1696520-1696539 | Msa1171770:three_prime_UTR | 35.0% |
| TACAGACTGAAATCAGAACA+TGG | + | chr8_1:1696605-1696624 | Msa1171770:three_prime_UTR | 35.0% | |
| ATACTTCCACCAAAACCATA+GGG | - | chr8_1:1696654-1696673 | None:intergenic | 35.0% | |
| TATACTTCCACCAAAACCAT+AGG | - | chr8_1:1696655-1696674 | None:intergenic | 35.0% | |
| CTTAATCCTAAAACTAGACC+AGG | - | chr8_1:1696690-1696709 | None:intergenic | 35.0% | |
| !! | TTAGGATTAAGTTGATGGGA+AGG | + | chr8_1:1696699-1696718 | Msa1171770:three_prime_UTR | 35.0% |
| !! | TTCTTGCTGTTCAAAGTTAG+AGG | + | chr8_1:1696722-1696741 | Msa1171770:three_prime_UTR | 35.0% |
| CTCAGATCGTTGTTAGGTTA+AGG | + | chr8_1:1694043-1694062 | Msa1171770:CDS | 40.0% | |
| AGAGTGATGTGATCACAAGT+TGG | + | chr8_1:1694274-1694293 | Msa1171770:intron | 40.0% | |
| GATGAAAGAGAAAGGGAAGA+AGG | - | chr8_1:1694385-1694404 | None:intergenic | 40.0% | |
| CGTTCTCAGATGAAAGAGAA+AGG | - | chr8_1:1694393-1694412 | None:intergenic | 40.0% | |
| ATCGAAACAGAAGATGGAGT+AGG | - | chr8_1:1694527-1694546 | None:intergenic | 40.0% | |
| ACAGATGGAAGGAAAACTCA+TGG | - | chr8_1:1694685-1694704 | None:intergenic | 40.0% | |
| CCCTAAAAACAACAGATGGA+AGG | - | chr8_1:1694696-1694715 | None:intergenic | 40.0% | |
| !!! | AGCGGGATTGTGTTGTTTTT+AGG | + | chr8_1:1694724-1694743 | Msa1171770:intron | 40.0% |
| !!! | GCGGGATTGTGTTGTTTTTA+GGG | + | chr8_1:1694725-1694744 | Msa1171770:intron | 40.0% |
| CGCTGGATATTACAAGCTTA+TGG | - | chr8_1:1694789-1694808 | None:intergenic | 40.0% | |
| AAATGATCCCCATCCTTCAA+AGG | + | chr8_1:1694962-1694981 | Msa1171770:intron | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr8_1:1695046-1695065 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr8_1:1695047-1695066 | None:intergenic | 40.0% | |
| ! | TCTACTGCTGCTTATTGTGT+TGG | + | chr8_1:1695443-1695462 | Msa1171770:intron | 40.0% |
| TGCAATTAAAGGTAGGAGGT+AGG | - | chr8_1:1695584-1695603 | None:intergenic | 40.0% | |
| ACCGATGAAACCTTTCTTGA+AGG | + | chr8_1:1695799-1695818 | Msa1171770:three_prime_UTR | 40.0% | |
| CATGACCATTCCTTCAAGAA+AGG | - | chr8_1:1695812-1695831 | None:intergenic | 40.0% | |
| ! | CATTGTTGCTCTTGTTGTCT+TGG | + | chr8_1:1695903-1695922 | Msa1171770:three_prime_UTR | 40.0% |
| GATGTAAGTCTTCTCGTTTC+AGG | + | chr8_1:1695979-1695998 | Msa1171770:three_prime_UTR | 40.0% | |
| CTCGTAAGAGTTTGGTAGAT+AGG | - | chr8_1:1696108-1696127 | None:intergenic | 40.0% | |
| CTATCTACCAAACTCTTACG+AGG | + | chr8_1:1696106-1696125 | Msa1171770:three_prime_UTR | 40.0% | |
| ! | TAATGGACCTCGTAAGAGTT+TGG | - | chr8_1:1696116-1696135 | None:intergenic | 40.0% |
| AGATACAGTTACTGCCCAAA+TGG | - | chr8_1:1696148-1696167 | None:intergenic | 40.0% | |
| ACGAGAAGCAATAAAAACCG+AGG | - | chr8_1:1696286-1696305 | None:intergenic | 40.0% | |
| ! | GCAAACACATGTAGTCTTGA+TGG | - | chr8_1:1696312-1696331 | None:intergenic | 40.0% |
| CTGCAACGAGAATAACATGA+TGG | - | chr8_1:1696334-1696353 | None:intergenic | 40.0% | |
| CATCATGTTATTCTCGTTGC+AGG | + | chr8_1:1696332-1696351 | Msa1171770:three_prime_UTR | 40.0% | |
| ATGTAACCAGTGGAGCAAAA+AGG | - | chr8_1:1696362-1696381 | None:intergenic | 40.0% | |
| !! | TGTGCTGCTACTTAGTTTGT+TGG | + | chr8_1:1696482-1696501 | Msa1171770:three_prime_UTR | 40.0% |
| !! | TCAACTTGGTTTGCCCTTAT+TGG | + | chr8_1:1696511-1696530 | Msa1171770:three_prime_UTR | 40.0% |
| !!! | TCACTACCTGGTCTAGTTTT+AGG | + | chr8_1:1696681-1696700 | Msa1171770:three_prime_UTR | 40.0% |
| ! | TTGCTGTTCAAAGTTAGAGG+AGG | + | chr8_1:1696725-1696744 | Msa1171770:three_prime_UTR | 40.0% |
| TGCTGTTCAAAGTTAGAGGA+GGG | + | chr8_1:1696726-1696745 | Msa1171770:three_prime_UTR | 40.0% | |
| TCAATCTCTGCCTCCATTTC+CGG | + | chr8_1:1693966-1693985 | Msa1171770:CDS | 45.0% | |
| CCTAACAACGATCTGAGAGA+GGG | - | chr8_1:1694040-1694059 | None:intergenic | 45.0% | |
| ACCTAACAACGATCTGAGAG+AGG | - | chr8_1:1694041-1694060 | None:intergenic | 45.0% | |
| ACAGAAGATGGAGTAGGATG+CGG | - | chr8_1:1694521-1694540 | None:intergenic | 45.0% | |
| !!! | GTATTTTGATGGTGGGATGC+CGG | + | chr8_1:1695017-1695036 | Msa1171770:intron | 45.0% |
| ! | ACAAAAAAGTTTGGGGTGGC+CGG | - | chr8_1:1695039-1695058 | None:intergenic | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr8_1:1695043-1695062 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr8_1:1695040-1695059 | Msa1171770:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr8_1:1695048-1695067 | None:intergenic | 45.0% | |
| CTAATCCAAATGGGCCTGTT+TGG | + | chr8_1:1695114-1695133 | Msa1171770:intron | 45.0% | |
| TCAATCCAAACAGGCCCATT+TGG | - | chr8_1:1695122-1695141 | None:intergenic | 45.0% | |
| GTATAAGCACCTGTGACACT+GGG | + | chr8_1:1695167-1695186 | Msa1171770:intron | 45.0% | |
| ATAAGTTCTCCCAGTGTCAC+AGG | - | chr8_1:1695179-1695198 | None:intergenic | 45.0% | |
| !! | ACTTTTCTCCATTTGGCTCG+AGG | - | chr8_1:1695739-1695758 | None:intergenic | 45.0% |
| TGGAGAAAAGTAGCCTATGG+TGG | + | chr8_1:1695748-1695767 | Msa1171770:three_prime_UTR | 45.0% | |
| GAACATGCTAAAGGTGATGC+TGG | + | chr8_1:1695852-1695871 | Msa1171770:three_prime_UTR | 45.0% | |
| ! | TTGCTCTTGTTGTCTTGGTC+TGG | + | chr8_1:1695908-1695927 | Msa1171770:three_prime_UTR | 45.0% |
| AAATGCTTCTGTAGTCGCCT+CGG | + | chr8_1:1696266-1696285 | Msa1171770:three_prime_UTR | 45.0% | |
| ! | GGTTTTCCTTTTTGCTCCAC+TGG | + | chr8_1:1696353-1696372 | Msa1171770:three_prime_UTR | 45.0% |
| ! | AGTTTGAGATCAATGGACCC+TGG | + | chr8_1:1696556-1696575 | Msa1171770:three_prime_UTR | 45.0% |
| ! | GTTTGAGATCAATGGACCCT+GGG | + | chr8_1:1696557-1696576 | Msa1171770:three_prime_UTR | 45.0% |
| ! | TGAGAAATTGGAGTGCCCTA+TGG | + | chr8_1:1696636-1696655 | Msa1171770:three_prime_UTR | 45.0% |
| !! | ATTGGAGTGCCCTATGGTTT+TGG | + | chr8_1:1696642-1696661 | Msa1171770:three_prime_UTR | 45.0% |
| GGAAATGGAGGCAGAGATTG+AGG | - | chr8_1:1693967-1693986 | None:intergenic | 50.0% | |
| ATCTGAGAGAGGGAACACAG+AGG | - | chr8_1:1694030-1694049 | None:intergenic | 50.0% | |
| CCCTCTCTCAGATCGTTGTT+AGG | + | chr8_1:1694037-1694056 | Msa1171770:CDS | 50.0% | |
| ! | TAAGGTTCGGTCGCTTGCTT+TGG | - | chr8_1:1694437-1694456 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGATGTAAGGTT+CGG | - | chr8_1:1694450-1694469 | None:intergenic | 50.0% |
| TGTCACATTCTTTGCAGCGC+TGG | - | chr8_1:1694806-1694825 | None:intergenic | 50.0% | |
| !! | CAGGCCCATTTGGATTAGCT+TGG | - | chr8_1:1695112-1695131 | None:intergenic | 50.0% |
| GGTATAAGCACCTGTGACAC+TGG | + | chr8_1:1695166-1695185 | Msa1171770:intron | 50.0% | |
| TCTGATTCTGCCGTTGCATC+TGG | + | chr8_1:1695658-1695677 | Msa1171770:three_prime_UTR | 50.0% | |
| ! | TTTCTCCATTTGGCTCGAGG+CGG | - | chr8_1:1695736-1695755 | None:intergenic | 50.0% |
| TCCAGGTTGCATACCACCAT+AGG | - | chr8_1:1695764-1695783 | None:intergenic | 50.0% | |
| AATCCACTGTCAAAGCCCCA+GGG | + | chr8_1:1696205-1696224 | Msa1171770:three_prime_UTR | 50.0% | |
| CAGAGGTAATCGCCGGAAGA+GGG | - | chr8_1:1694013-1694032 | None:intergenic | 55.0% | |
| ACAGAGGTAATCGCCGGAAG+AGG | - | chr8_1:1694014-1694033 | None:intergenic | 55.0% | |
| GGGAACACAGAGGTAATCGC+CGG | - | chr8_1:1694020-1694039 | None:intergenic | 55.0% | |
| TTCGGTCGCTTGCTTTGGTC+GGG | - | chr8_1:1694432-1694451 | None:intergenic | 55.0% | |
| GTTCGGTCGCTTGCTTTGGT+CGG | - | chr8_1:1694433-1694452 | None:intergenic | 55.0% | |
| !! | GTGGTGTGGTGGTGGATGTA+AGG | - | chr8_1:1694455-1694474 | None:intergenic | 55.0% |
| TGGAAAGGAGAGAGTGGTCG+CGG | - | chr8_1:1694488-1694507 | None:intergenic | 55.0% | |
| GACGGATGGAAAGGAGAGAG+TGG | - | chr8_1:1694494-1694513 | None:intergenic | 55.0% | |
| GAAGATGGAGTAGGATGCGG+CGG | - | chr8_1:1694518-1694537 | None:intergenic | 55.0% | |
| GCCTATGGTGGTATGCAACC+TGG | + | chr8_1:1695760-1695779 | Msa1171770:three_prime_UTR | 55.0% | |
| GAATCCACTGTCAAAGCCCC+AGG | + | chr8_1:1696204-1696223 | Msa1171770:three_prime_UTR | 55.0% | |
| ATCCACTGTCAAAGCCCCAG+GGG | + | chr8_1:1696206-1696225 | Msa1171770:three_prime_UTR | 55.0% | |
| AGGGTTCTTCAAAGCCCCTG+GGG | - | chr8_1:1696223-1696242 | None:intergenic | 55.0% | |
| CAGGGTTCTTCAAAGCCCCT+GGG | - | chr8_1:1696224-1696243 | None:intergenic | 55.0% | |
| CAAAGCTTAGCCTCGTCCCA+GGG | - | chr8_1:1696576-1696595 | None:intergenic | 55.0% | |
| ACAAAGCTTAGCCTCGTCCC+AGG | - | chr8_1:1696577-1696596 | None:intergenic | 55.0% | |
| !!! | GGAGTGCCCTATGGTTTTGG+TGG | + | chr8_1:1696645-1696664 | Msa1171770:three_prime_UTR | 55.0% |
| AAGAGGGAGAGAGAAGCGGC+GGG | - | chr8_1:1693997-1694016 | None:intergenic | 60.0% | |
| GAAGAGGGAGAGAGAAGCGG+CGG | - | chr8_1:1693998-1694017 | None:intergenic | 60.0% | |
| CCGGAAGAGGGAGAGAGAAG+CGG | - | chr8_1:1694001-1694020 | None:intergenic | 60.0% | |
| CCGCTTCTCTCTCCCTCTTC+CGG | + | chr8_1:1693998-1694017 | Msa1171770:CDS | 60.0% | |
| CTTCTCCGCCTCGAGCCAAA+TGG | + | chr8_1:1695728-1695747 | Msa1171770:three_prime_UTR | 60.0% | |
| GCAGGGTTCTTCAAAGCCCC+TGG | - | chr8_1:1696225-1696244 | None:intergenic | 60.0% | |
| GATCAATGGACCCTGGGACG+AGG | + | chr8_1:1696563-1696582 | Msa1171770:three_prime_UTR | 60.0% | |
| ATCCACCACCACACCACCGC+CGG | + | chr8_1:1694458-1694477 | Msa1171770:CDS | 65.0% | |
| !! | TGCGGCGGTGACGGATGGAA+AGG | - | chr8_1:1694503-1694522 | None:intergenic | 65.0% |
| !! | TAGGATGCGGCGGTGACGGA+TGG | - | chr8_1:1694508-1694527 | None:intergenic | 65.0% |
| GGAGTAGGATGCGGCGGTGA+CGG | - | chr8_1:1694512-1694531 | None:intergenic | 65.0% | |
| ! | AGCCCCTGGGGCTTTGACAG+TGG | - | chr8_1:1696211-1696230 | None:intergenic | 65.0% |
| AGGGAGAGAGAAGCGGCGGG+CGG | - | chr8_1:1693994-1694013 | None:intergenic | 70.0% | |
| AGAGAGTGGTCGCGGCTCGC+CGG | - | chr8_1:1694480-1694499 | None:intergenic | 70.0% | |
| ! | GCGGGCGGCACCGGAAATGG+AGG | - | chr8_1:1693979-1693998 | None:intergenic | 75.0% |
| AGAGAAGCGGCGGGCGGCAC+CGG | - | chr8_1:1693988-1694007 | None:intergenic | 75.0% | |
| !! | GCGGCGGGCGGCACCGGAAA+TGG | - | chr8_1:1693982-1694001 | None:intergenic | 80.0% |
| ! | CGCCGGCGGTGGTGTGGTGG+TGG | - | chr8_1:1694463-1694482 | None:intergenic | 80.0% |
| ! | GCTCGCCGGCGGTGGTGTGG+TGG | - | chr8_1:1694466-1694485 | None:intergenic | 80.0% |
| ! | GAGTGGTCGCGGCTCGCCGG+CGG | - | chr8_1:1694477-1694496 | None:intergenic | 80.0% |
| ! | GCGGCTCGCCGGCGGTGGTG+TGG | - | chr8_1:1694469-1694488 | None:intergenic | 85.0% |
| ! | TGGTCGCGGCTCGCCGGCGG+TGG | - | chr8_1:1694474-1694493 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 1693928 | 1696943 | 1693928 | ID=Msa1171770;Name=Msa1171770 |
| chr8_1 | mRNA | 1693928 | 1696943 | 1693928 | ID=Msa1171770-mRNA-1;Parent=Msa1171770;Name=Msa1171770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|1|1|1|0.5|0.66|3|1323|165 |
| chr8_1 | exon | 1693928 | 1694064 | 1693928 | ID=Msa1171770-mRNA-1:exon:629;Parent=Msa1171770-mRNA-1 |
| chr8_1 | exon | 1694361 | 1694610 | 1694361 | ID=Msa1171770-mRNA-1:exon:630;Parent=Msa1171770-mRNA-1 |
| chr8_1 | exon | 1695510 | 1696943 | 1695510 | ID=Msa1171770-mRNA-1:exon:631;Parent=Msa1171770-mRNA-1 |
| chr8_1 | CDS | 1693928 | 1694064 | 1693928 | ID=Msa1171770-mRNA-1:cds;Parent=Msa1171770-mRNA-1 |
| chr8_1 | CDS | 1694361 | 1694610 | 1694361 | ID=Msa1171770-mRNA-1:cds;Parent=Msa1171770-mRNA-1 |
| chr8_1 | CDS | 1695510 | 1695620 | 1695510 | ID=Msa1171770-mRNA-1:cds;Parent=Msa1171770-mRNA-1 |
| chr8_1 | three_prime_UTR | 1695621 | 1696943 | 1695621 | ID=Msa1171770-mRNA-1:three_prime_utr;Parent=Msa1171770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
