AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516800 MtrunA17_Chr3g0127771 97.938 388 4 1 1 388 1 384 0.0 789
Msa0516800 MtrunA17_Chr3g0127761 77.556 401 50 11 1 386 1 376 0.0 598
Msa0516800 MtrunA17_Chr2g0312971 62.411 282 90 3 104 384 28 294 2.89e-118 345
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516800 AT4G10610.1 62.985 335 98 4 55 388 27 336 2.33e-147 421
Msa0516800 AT1G32790.1 65.495 313 96 3 79 388 55 358 2.04e-144 414
Msa0516800 AT3G49390.2 54.617 379 137 6 1 379 1 344 1.24e-141 407
Msa0516800 AT3G49390.2 46.465 99 47 4 195 292 258 351 9.04e-14 72.4
Msa0516800 AT3G49390.3 54.617 379 137 6 1 379 1 344 1.24e-141 407
Msa0516800 AT3G49390.3 46.465 99 47 4 195 292 258 351 9.04e-14 72.4
Msa0516800 AT3G49390.1 54.617 379 137 6 1 379 1 344 1.24e-141 407
Msa0516800 AT3G49390.1 46.465 99 47 4 195 292 258 351 9.04e-14 72.4
Msa0516800 AT4G10610.2 62.342 316 94 3 55 370 27 317 5.72e-138 397
Msa0516800 AT1G32790.2 64.548 299 90 3 79 372 55 342 3.37e-133 387
Msa0516800 AT1G32790.2 41.772 79 45 1 300 378 173 250 4.74e-12 67.4
Msa0516800 AT3G14450.1 59.790 286 103 3 103 386 49 324 1.48e-119 350
Msa0516800 AT1G53650.2 60.351 285 84 4 103 386 49 305 3.15e-118 346
Msa0516800 AT1G53650.1 75.500 200 49 0 187 386 112 311 5.24e-111 328
Msa0516800 AT5G24440.1 46.579 380 135 8 1 379 1 313 1.98e-109 324
Msa0516800 AT1G34140.1 27.545 167 105 6 202 364 30 184 4.68e-11 64.3

Find 134 sgRNAs with CRISPR-Local

Find 525 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGCTTCAGAATAATTT+TGG 0.133726 3_4:-68338766 Msa0516800:CDS
CGATTCTTCCAGTGAGAATT+TGG 0.139421 3_4:-68339178 Msa0516800:CDS
TGAAGCATAAAATTGTTATT+AGG 0.187478 3_4:+68338778 None:intergenic
CTCACTGGAAGAATCGATTT+TGG 0.195831 3_4:+68339185 None:intergenic
GTTCAGATTCTGATCGGTTT+TGG 0.204217 3_4:+68339104 None:intergenic
GAGAAGAGAGAAGGGTTAAA+AGG 0.211159 3_4:+68339483 None:intergenic
GAGCTGTAGTGGTGTGGTTT+TGG 0.233396 3_4:-68333439 Msa0516800:CDS
GAATCATCCTTCATGTTTCT+AGG 0.241925 3_4:-68333257 Msa0516800:three_prime_UTR
GAAGCATAAAATTGTTATTA+GGG 0.271323 3_4:+68338779 None:intergenic
TGATGGGTATGGTGGGAATG+GGG 0.303136 3_4:-68338944 Msa0516800:CDS
CAAGCGTGAAATGAGGGATT+TGG 0.308282 3_4:-68338911 Msa0516800:CDS
GCTAATGCTACTGCTAATAA+TGG 0.308481 3_4:-68338721 Msa0516800:CDS
GTTCAACGTCTGAGGCTTCT+TGG 0.322437 3_4:-68337141 Msa0516800:CDS
TTGATGGGTATGGTGGGAAT+GGG 0.325031 3_4:-68338945 Msa0516800:CDS
TTCAACGTCTGAGGCTTCTT+GGG 0.327500 3_4:-68337140 Msa0516800:CDS
CTCATATGCAATGTTAAGAT+TGG 0.329197 3_4:-68332865 Msa0516800:three_prime_UTR
TGCAAACCGAAGAATGGAAT+TGG 0.331294 3_4:+68337898 None:intergenic
AGATACCATACTGCAAGTTT+TGG 0.337934 3_4:+68333138 None:intergenic
GTTGATGGGTATGGTGGGAA+TGG 0.353054 3_4:-68338946 Msa0516800:CDS
TGGTTTCATGGCTCATCAAA+TGG 0.357089 3_4:-68339007 Msa0516800:CDS
GATGGGTATGGTGGGAATGG+GGG 0.359851 3_4:-68338943 Msa0516800:CDS
ACCAACAACGTTGGTGTTAA+CGG 0.363856 3_4:+68339074 None:intergenic
AAATGGTAACCATGGTTTCA+TGG 0.371051 3_4:-68339019 Msa0516800:CDS
CGTTTGTTGAGAAGTGATTA+TGG 0.379479 3_4:-68339229 Msa0516800:exon
CAGAATCAGCATTTGGTTGA+TGG 0.381258 3_4:-68338961 Msa0516800:CDS
ATGGGTCAGATGCATGGAAA+TGG 0.381795 3_4:-68338988 Msa0516800:CDS
TGTTGCCAAAACTTGCAGTA+TGG 0.385142 3_4:-68333143 Msa0516800:three_prime_UTR
TTATGTCTACAGTTGGTGCT+AGG 0.385817 3_4:-68337780 Msa0516800:intron
GCTGATACATAAATCAATAA+AGG 0.396239 3_4:-68339262 Msa0516800:five_prime_UTR
AGAAGAGAGAAGGGTTAAAA+GGG 0.396479 3_4:+68339484 None:intergenic
TGTGTCTGACATTGATCAAC+AGG 0.401213 3_4:-68338485 Msa0516800:intron
TATATGTAAATATATATCTC+TGG 0.401309 3_4:+68333222 None:intergenic
GGGATCCCAATTCCATTCTT+CGG 0.402516 3_4:-68337904 Msa0516800:CDS
ATTTGTTGATCCAACCTTAT+GGG 0.408252 3_4:+68333408 None:intergenic
TGAACTATTTAGTTTATGTC+TGG 0.409318 3_4:-68332923 Msa0516800:three_prime_UTR
TGGGGTTCAGAATCAGCATT+TGG 0.410154 3_4:-68338968 Msa0516800:CDS
GGGTAACCAAACCCAGCATT+AGG 0.413098 3_4:+68338799 None:intergenic
ATTTGTGCAATAAATTGTTC+TGG 0.413198 3_4:+68337516 None:intergenic
GCTCGGACTGGTGTCTTTGA+TGG 0.415717 3_4:+68333306 None:intergenic
AAGAGAGAGAGAAGAGAGAA+GGG 0.416331 3_4:+68339475 None:intergenic
GGAATTTGTGCCACCTTCAC+TGG 0.418984 3_4:-68338854 Msa0516800:CDS
AACCTGTCTGGAACCATGCT+TGG 0.422116 3_4:-68337748 Msa0516800:CDS
AGTGTATCATAAGATGGATA+TGG 0.424924 3_4:-68338542 Msa0516800:CDS
TTAGCTGCTGGACCTAATGC+TGG 0.426185 3_4:-68338811 Msa0516800:CDS
ATGAAACCATGGTTACCATT+TGG 0.426411 3_4:+68339021 None:intergenic
TGGGTCAGATGCATGGAAAT+GGG 0.429882 3_4:-68338987 Msa0516800:CDS
GCTGGACCTAATGCTGGGTT+TGG 0.431619 3_4:-68338805 Msa0516800:CDS
AGGGCTGCTTTGAACCTGTC+TGG 0.436132 3_4:-68337760 Msa0516800:CDS
CTTCATGTTTCTAGGATGAA+TGG 0.440373 3_4:-68333249 Msa0516800:three_prime_UTR
CTTTAAGGCTTAAGTTATGC+TGG 0.441072 3_4:-68333047 Msa0516800:three_prime_UTR
ACCGTTAACACCAACGTTGT+TGG 0.450994 3_4:-68339075 Msa0516800:CDS
TCACTTTGATCTTATGTCAA+TGG 0.452034 3_4:-68339427 Msa0516800:five_prime_UTR
TAAAAGGGTAATTATAAAGA+AGG 0.453051 3_4:+68339499 None:intergenic
AGAAAAGAGAAGAGATGATT+CGG 0.457909 3_4:-68338519 Msa0516800:CDS
TTGTTGATTGCCGAGTATGC+GGG 0.466260 3_4:-68337925 Msa0516800:CDS
ATGAACACCTATGTTATGTA+TGG 0.468098 3_4:+68339626 None:intergenic
TATGTCTACAGTTGGTGCTA+GGG 0.469753 3_4:-68337779 Msa0516800:intron
TTCGTTGAGTTTACTGATGA+AGG 0.475411 3_4:-68337875 Msa0516800:intron
CAGCATTTGGTTGATGGGTA+TGG 0.475828 3_4:-68338955 Msa0516800:CDS
GGTTGGATGTTTGTAACATC+CGG 0.478074 3_4:-68332998 Msa0516800:three_prime_UTR
AGAATCAGCATTTGGTTGAT+GGG 0.479989 3_4:-68338960 Msa0516800:CDS
TCGTAAAGTGAGAAATTTGA+AGG 0.480640 3_4:+68339450 None:intergenic
AACGAATGCAAACCGAAGAA+TGG 0.495857 3_4:+68337892 None:intergenic
GGACAACAGTGTTGTTTCAT+CGG 0.497652 3_4:-68339157 Msa0516800:CDS
ATGTGTTTAACTTGTAGAGT+TGG 0.498488 3_4:-68333086 Msa0516800:three_prime_UTR
GCAAACCGAAGAATGGAATT+GGG 0.498667 3_4:+68337899 None:intergenic
CTCGCAACGAGAGACTTCTA+TGG 0.500706 3_4:-68333019 Msa0516800:three_prime_UTR
TCACTGGTTACTAATTATCA+TGG 0.506556 3_4:-68338838 Msa0516800:CDS
GGTGCAATAGCAGTCTTTGA+AGG 0.507414 3_4:+68337703 None:intergenic
TTTGAAGGCAGCACTCTCAA+TGG 0.508142 3_4:+68337718 None:intergenic
CTAGGTTACTGAAGAGCAGC+TGG 0.510566 3_4:-68338364 Msa0516800:intron
TATCATGGCTACTTAGCTGC+TGG 0.511744 3_4:-68338823 Msa0516800:CDS
GGTTTCATGGCTCATCAAAT+GGG 0.513313 3_4:-68339006 Msa0516800:CDS
GCTGGTGTTCAGATTCTGAT+CGG 0.518281 3_4:+68339098 None:intergenic
TCTCTTTCTTAACTGCGGCC+AGG 0.521464 3_4:-68338337 Msa0516800:intron
GAAGAGAGAGAGAAGAGAGA+AGG 0.522120 3_4:+68339474 None:intergenic
GTTGTCAAAACTGAATCCTA+TGG 0.523923 3_4:-68338881 Msa0516800:CDS
ATGAAGGATGATTCAGTGCA+TGG 0.525722 3_4:+68333266 None:intergenic
TAGCTGCTGGACCTAATGCT+GGG 0.527554 3_4:-68338810 Msa0516800:CDS
AACGTTGGTGTTAACGGTGC+TGG 0.531117 3_4:+68339080 None:intergenic
CAACAAGACAGTGTTCCAAA+TGG 0.534163 3_4:-68339036 Msa0516800:CDS
CATTTGGTTGATGGGTATGG+TGG 0.535130 3_4:-68338952 Msa0516800:CDS
AATTGGGATCCCCGCATACT+CGG 0.536460 3_4:+68337915 None:intergenic
CATCAAATGGGTCAGATGCA+TGG 0.537520 3_4:-68338994 Msa0516800:CDS
AAGCAATCCGAGTTGAATGA+TGG 0.541752 3_4:+68337112 None:intergenic
TTGCACAAATCTCGACAAGA+AGG 0.542950 3_4:-68337503 Msa0516800:intron
GCGTGAAATGAGGGATTTGG+AGG 0.545654 3_4:-68338908 Msa0516800:CDS
TCAACGTCTGAGGCTTCTTG+GGG 0.545879 3_4:-68337139 Msa0516800:CDS
ATATGTAAATATATATCTCT+GGG 0.546734 3_4:+68333223 None:intergenic
GCGAAGAGTGTATCATAAGA+TGG 0.548157 3_4:-68338548 Msa0516800:CDS
ATTGCTGCACTGAGCTGTAG+TGG 0.548385 3_4:-68333450 Msa0516800:CDS
GAGTTTCAAGCGTGAAATGA+GGG 0.552128 3_4:-68338917 Msa0516800:CDS
ACTGTTGTCCAAATTCTCAC+TGG 0.555026 3_4:+68339170 None:intergenic
ATCCAAGCATGGTTCCAGAC+AGG 0.558907 3_4:+68337746 None:intergenic
TTTAAATAAACAGTAAACTC+CGG 0.559741 3_4:+68332979 None:intergenic
GTTGTGTTGCAGAGGAAGAA+TGG 0.563277 3_4:-68338586 Msa0516800:intron
GAGTACGAACAGCACGAGCT+CGG 0.564193 3_4:+68333289 None:intergenic
TCATGTAGGTTCAACGTCTG+AGG 0.564696 3_4:-68337149 Msa0516800:intron
AAAACTGAATCCTATGGCTG+AGG 0.567529 3_4:-68338875 Msa0516800:CDS
AGAGTTTCAAGCGTGAAATG+AGG 0.568029 3_4:-68338918 Msa0516800:CDS
TGCACTGAGCTGTAGTGGTG+TGG 0.569054 3_4:-68333445 Msa0516800:CDS
GTTGTTGATTGCCGAGTATG+CGG 0.576812 3_4:-68337926 Msa0516800:CDS
CAACGAGAGACTTCTATGGT+TGG 0.577394 3_4:-68333015 Msa0516800:three_prime_UTR
ATGGCGGTAGCTGAGAATGT+TGG 0.580311 3_4:-68339210 Msa0516800:CDS
TAATGGACAGATTAACAGAA+GGG 0.581694 3_4:-68338704 Msa0516800:intron
CTTTGAATCTATCTGTGGCG+AGG 0.582020 3_4:-68337333 Msa0516800:intron
CGAACAGCACGAGCTCGGAC+TGG 0.585672 3_4:+68333294 None:intergenic
TGGCTGATTCTCTGTGGCGA+CGG 0.586104 3_4:-68332845 None:intergenic
CACTTCTTTGAATCTATCTG+TGG 0.587202 3_4:-68337338 Msa0516800:CDS
ATTTGGTTGATGGGTATGGT+GGG 0.591826 3_4:-68338951 Msa0516800:CDS
AGTTCATTACTAACTAACAA+AGG 0.600833 3_4:+68332940 None:intergenic
TGAAGGATGATTCAGTGCAT+GGG 0.603830 3_4:+68333267 None:intergenic
CATTCATCCTAGAAACATGA+AGG 0.606080 3_4:+68333250 None:intergenic
GGGATTACCATCATTCAACT+CGG 0.607758 3_4:-68337119 Msa0516800:CDS
TGTTGATTGCCGAGTATGCG+GGG 0.611381 3_4:-68337924 Msa0516800:CDS
TTTGATGAGCCATGAAACCA+TGG 0.614650 3_4:+68339010 None:intergenic
AAAGAGAAGAGATGATTCGG+AGG 0.615099 3_4:-68338516 Msa0516800:CDS
ATAATGGACAGATTAACAGA+AGG 0.615554 3_4:-68338705 Msa0516800:CDS
AGTGTTCCAAATGGTAACCA+TGG 0.620845 3_4:-68339027 Msa0516800:CDS
GCGGCTCTCTTTCTTAACTG+CGG 0.622650 3_4:-68338342 Msa0516800:CDS
GGGTCAGATGCATGGAAATG+GGG 0.623897 3_4:-68338986 Msa0516800:CDS
TGATAATTAGTAACCAGTGA+AGG 0.626417 3_4:+68338841 None:intergenic
GGCACAAATTCCTCAGCCAT+AGG 0.629252 3_4:+68338865 None:intergenic
CAATGGATAATATCCAAGCA+TGG 0.634411 3_4:+68337735 None:intergenic
AAGTCTCAACTAAACGCCAC+AGG 0.634844 3_4:+68333165 None:intergenic
TGTTTCATCGGACTCAACTG+AGG 0.647222 3_4:-68339145 Msa0516800:CDS
AGCCATACCATACATAACAT+AGG 0.652113 3_4:-68339633 None:intergenic
TAATTAGTAACCAGTGAAGG+TGG 0.655408 3_4:+68338844 None:intergenic
ATTGATCACACCAACAACGT+TGG 0.675812 3_4:+68339065 None:intergenic
TGTGAAAGTGATGACGATGA+AGG 0.679267 3_4:+68339589 None:intergenic
TAAGATTGGCTGATTCTCTG+TGG 0.699316 3_4:-68332851 Msa0516800:three_prime_UTR
GGTTACTGAAGAGCAGCTGG+CGG 0.706094 3_4:-68338361 Msa0516800:CDS
TGTAAATATATATCTCTGGG+CGG 0.706420 3_4:+68333226 None:intergenic
TTGTTGAGAAGTGATTATGG+CGG 0.738475 3_4:-68339226 Msa0516800:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTGTTTTAATTATTTTT+TGG - chr3_4:68334650-68334669 Msa0516800:intron 10.0%
!! GTTAATATGATAATTATATA+TGG - chr3_4:68338481-68338500 Msa0516800:intron 10.0%
!!! TTTTTTTTTTTTAACAGAAA+TGG + chr3_4:68338953-68338972 None:intergenic 10.0%
!!! GTAAAATATTTCCATTATTT+TGG - chr3_4:68335297-68335316 Msa0516800:intron 15.0%
!!! AGACAAAATGAATTTATTTT+CGG + chr3_4:68335572-68335591 None:intergenic 15.0%
!!! TATCAAATGTTATTTTATGA+TGG - chr3_4:68336874-68336893 Msa0516800:intron 15.0%
!! ATAATAATGTCAAATTCTTT+AGG - chr3_4:68337076-68337095 Msa0516800:intron 15.0%
!! GTTACAAAATATATAGTATT+TGG + chr3_4:68337387-68337406 None:intergenic 15.0%
!! AAATTAAAATACACAGAAAA+TGG - chr3_4:68338376-68338395 Msa0516800:intron 15.0%
!! TATGATAATTATATATGGAT+TGG - chr3_4:68338486-68338505 Msa0516800:CDS 15.0%
!! ATATGTAAATATATATCTCT+GGG + chr3_4:68339254-68339273 None:intergenic 15.0%
!! TATATGTAAATATATATCTC+TGG + chr3_4:68339255-68339274 None:intergenic 15.0%
!!! ATAGAAACATATATGTTTTA+AGG - chr3_4:68339284-68339303 Msa0516800:five_prime_UTR 15.0%
!! TAAAAGGGTAATTATAAAGA+AGG + chr3_4:68332978-68332997 None:intergenic 20.0%
!! TCAAAAAAAAAAACATACCT+GGG + chr3_4:68333095-68333114 None:intergenic 20.0%
!! TTCAAAAAAAAAAACATACC+TGG + chr3_4:68333096-68333115 None:intergenic 20.0%
!!! AAAATCGGTTTTTTTTTATG+TGG - chr3_4:68333117-68333136 Msa0516800:three_prime_UTR 20.0%
!!! AAATCGGTTTTTTTTTATGT+GGG - chr3_4:68333118-68333137 Msa0516800:three_prime_UTR 20.0%
!!! GAAGCATAAAATTGTTATTA+GGG + chr3_4:68333698-68333717 None:intergenic 20.0%
!!! TGAAGCATAAAATTGTTATT+AGG + chr3_4:68333699-68333718 None:intergenic 20.0%
!!! TTTATGCTTCAGAATAATTT+TGG - chr3_4:68333708-68333727 Msa0516800:intron 20.0%
!! CAGAAAAGATAAAAAATATC+AGG + chr3_4:68334881-68334900 None:intergenic 20.0%
!!! ATATTTTTCAGTATCTGTTT+TGG - chr3_4:68335039-68335058 Msa0516800:intron 20.0%
!!! AGTGTTTGACTATTTAATTT+TGG - chr3_4:68335266-68335285 Msa0516800:intron 20.0%
!! ACATGAATAAACCAAAATAA+TGG + chr3_4:68335311-68335330 None:intergenic 20.0%
!!! TTATTTTGGTTTATTCATGT+AGG - chr3_4:68335311-68335330 Msa0516800:intron 20.0%
!! TTTGTGAAATTATAATCGAT+AGG - chr3_4:68335487-68335506 Msa0516800:intron 20.0%
!!! AAAATGAATTTATTTTCGGA+AGG + chr3_4:68335568-68335587 None:intergenic 20.0%
!!! AGTACGAAACAATTTATTTT+GGG + chr3_4:68336020-68336039 None:intergenic 20.0%
!!! AAGTACGAAACAATTTATTT+TGG + chr3_4:68336021-68336040 None:intergenic 20.0%
!! TTATTATTGCCCAAAAAATA+GGG + chr3_4:68337063-68337082 None:intergenic 20.0%
!! ATTATTATTGCCCAAAAAAT+AGG + chr3_4:68337064-68337083 None:intergenic 20.0%
!! ATTTCTGTTGAAATTACTAA+AGG + chr3_4:68337293-68337312 None:intergenic 20.0%
!! TTCAACAGAAATTTATATGA+TGG - chr3_4:68337301-68337320 Msa0516800:intron 20.0%
!!! TACTATATATTTTGTAACCT+AGG - chr3_4:68337389-68337408 Msa0516800:intron 20.0%
!! ACAAAATAATCAGTGAAAAT+GGG + chr3_4:68337540-68337559 None:intergenic 20.0%
!! AACAAAATAATCAGTGAAAA+TGG + chr3_4:68337541-68337560 None:intergenic 20.0%
!! ACAAAATATATATAACACAC+AGG + chr3_4:68338463-68338482 None:intergenic 20.0%
!!! ATAATTATATATGGATTGGT+CGG - chr3_4:68338490-68338509 Msa0516800:CDS 20.0%
!!! TATAATACTGATTGGAAATT+TGG - chr3_4:68338769-68338788 Msa0516800:CDS 20.0%
!! TTATTAACATTTGTCTCAAT+AGG - chr3_4:68338884-68338903 Msa0516800:CDS 20.0%
!!! AATCATTTGTTCTTATGTTT+TGG - chr3_4:68339131-68339150 Msa0516800:CDS 20.0%
!! TTTAAATAAACAGTAAACTC+CGG + chr3_4:68339498-68339517 None:intergenic 20.0%
! GCTGATACATAAATCAATAA+AGG - chr3_4:68333212-68333231 Msa0516800:three_prime_UTR 25.0%
! AAACTAAACACAATATCGAA+AGG + chr3_4:68333841-68333860 None:intergenic 25.0%
!!! AAGGATTGTTGTTTTTATGT+TGG - chr3_4:68334084-68334103 Msa0516800:intron 25.0%
!!! TTGTTTTTATGTTGGAATCT+AGG - chr3_4:68334092-68334111 Msa0516800:intron 25.0%
!! TAGTTTCCTTTTCTTAATGA+TGG - chr3_4:68334484-68334503 Msa0516800:intron 25.0%
! ATTTGTGCAATAAATTGTTC+TGG + chr3_4:68334961-68334980 None:intergenic 25.0%
! ACAGATACTGAAAAATATCA+GGG + chr3_4:68335037-68335056 None:intergenic 25.0%
! AACAGATACTGAAAAATATC+AGG + chr3_4:68335038-68335057 None:intergenic 25.0%
! CGATAAATACACCAAAATAA+CGG + chr3_4:68335240-68335259 None:intergenic 25.0%
!!! CGTTATTTTGGTGTATTTAT+CGG - chr3_4:68335238-68335257 Msa0516800:intron 25.0%
!!! GTTATTTTGGTGTATTTATC+GGG - chr3_4:68335239-68335258 Msa0516800:intron 25.0%
!!! TTATTTTGGTGTATTTATCG+GGG - chr3_4:68335240-68335259 Msa0516800:intron 25.0%
!!! GTTTGACTATTTAATTTTGG+AGG - chr3_4:68335269-68335288 Msa0516800:intron 25.0%
!!! GATAGTTAGTTTTTACAGAA+TGG + chr3_4:68335625-68335644 None:intergenic 25.0%
! TCTGTAAAAACTAACTATCA+AGG - chr3_4:68335626-68335645 Msa0516800:intron 25.0%
! CTGTAAAAACTAACTATCAA+GGG - chr3_4:68335627-68335646 Msa0516800:intron 25.0%
! TGTAAAAACTAACTATCAAG+GGG - chr3_4:68335628-68335647 Msa0516800:intron 25.0%
! ATAGAGACTTAGGTATTATA+AGG + chr3_4:68335985-68336004 None:intergenic 25.0%
!!! GTACGAAACAATTTATTTTG+GGG + chr3_4:68336019-68336038 None:intergenic 25.0%
!!! TGTTTTTAATCCCTAAGATA+AGG + chr3_4:68336200-68336219 None:intergenic 25.0%
! GATCTACCATTAGAAAATTA+CGG + chr3_4:68336307-68336326 None:intergenic 25.0%
!!! ATGAAGATTTGGTCTATTTT+CGG - chr3_4:68336439-68336458 Msa0516800:intron 25.0%
! GACAACGATTAAATAGTTAA+CGG + chr3_4:68336719-68336738 None:intergenic 25.0%
! TTCTTTGTATTAAGTAATCG+AGG - chr3_4:68336998-68337017 Msa0516800:intron 25.0%
! TATTATTGCCCAAAAAATAG+GGG + chr3_4:68337062-68337081 None:intergenic 25.0%
! ATTATTTCCCTTAAATGGTA+GGG + chr3_4:68337128-68337147 None:intergenic 25.0%
!!! ATGTATTTTTGCCAAATCTT+GGG - chr3_4:68337225-68337244 Msa0516800:intron 25.0%
!!! GTTCATTAGTTTTGGATTAA+TGG - chr3_4:68337248-68337267 Msa0516800:intron 25.0%
! TATATAGTATTTGGATGCAA+GGG + chr3_4:68337378-68337397 None:intergenic 25.0%
! ATATATAGTATTTGGATGCA+AGG + chr3_4:68337379-68337398 None:intergenic 25.0%
! AAAATGGTAAAGAATTGAGA+TGG - chr3_4:68338392-68338411 Msa0516800:intron 25.0%
! AAATGGTAAAGAATTGAGAT+GGG - chr3_4:68338393-68338412 Msa0516800:intron 25.0%
! AAAGGAAGTTGAAACTAATA+GGG + chr3_4:68338687-68338706 None:intergenic 25.0%
! AAAAGGAAGTTGAAACTAAT+AGG + chr3_4:68338688-68338707 None:intergenic 25.0%
! ACAGAATTATCTTACAGAAA+AGG + chr3_4:68338705-68338724 None:intergenic 25.0%
! TCCAATCAGTATTATACTAA+GGG + chr3_4:68338765-68338784 None:intergenic 25.0%
! TTCCAATCAGTATTATACTA+AGG + chr3_4:68338766-68338785 None:intergenic 25.0%
! ACATAAGAACAAATGATTGA+AGG + chr3_4:68339129-68339148 None:intergenic 25.0%
! AGTTCATTACTAACTAACAA+AGG + chr3_4:68339537-68339556 None:intergenic 25.0%
!! TGAACTATTTAGTTTATGTC+TGG - chr3_4:68339551-68339570 Msa0516800:five_prime_UTR 25.0%
ATGAACACCTATGTTATGTA+TGG + chr3_4:68332851-68332870 None:intergenic 30.0%
!!! TGTTCTAGTTTTGATGTGTT+GGG + chr3_4:68332912-68332931 None:intergenic 30.0%
!!! TTGTTCTAGTTTTGATGTGT+TGG + chr3_4:68332913-68332932 None:intergenic 30.0%
TCGTAAAGTGAGAAATTTGA+AGG + chr3_4:68333027-68333046 None:intergenic 30.0%
TCACTTTGATCTTATGTCAA+TGG - chr3_4:68333047-68333066 Msa0516800:three_prime_UTR 30.0%
! TTTTAGATACAATACAACCC+AGG - chr3_4:68333075-68333094 Msa0516800:three_prime_UTR 30.0%
TGATAATTAGTAACCAGTGA+AGG + chr3_4:68333636-68333655 None:intergenic 30.0%
! TCACTGGTTACTAATTATCA+TGG - chr3_4:68333636-68333655 Msa0516800:intron 30.0%
!! ATAATGGACAGATTAACAGA+AGG - chr3_4:68333769-68333788 Msa0516800:intron 30.0%
! TAATGGACAGATTAACAGAA+GGG - chr3_4:68333770-68333789 Msa0516800:intron 30.0%
AGTGTATCATAAGATGGATA+TGG - chr3_4:68333932-68333951 Msa0516800:intron 30.0%
AGAAAAGAGAAGAGATGATT+CGG - chr3_4:68333955-68333974 Msa0516800:intron 30.0%
!!! TTGCACGTGTATTGATTTTA+AGG - chr3_4:68334065-68334084 Msa0516800:intron 30.0%
TTGAGCTAATTAACCATGTA+TGG - chr3_4:68334299-68334318 Msa0516800:intron 30.0%
TTGAGCTAATTAACCATGTA+TGG - chr3_4:68334299-68334318 Msa0516800:intron 30.0%
! TTTCCTTTTCTTAATGATGG+TGG - chr3_4:68334487-68334506 Msa0516800:intron 30.0%
AAACACAAACGACAATGTAA+CGG + chr3_4:68334639-68334658 None:intergenic 30.0%
GACATAAAACCGTTAATTCA+GGG + chr3_4:68334681-68334700 None:intergenic 30.0%
AGACATAAAACCGTTAATTC+AGG + chr3_4:68334682-68334701 None:intergenic 30.0%
CTAAGAAGAAAAATTACCCT+GGG + chr3_4:68334816-68334835 None:intergenic 30.0%
TCTAAGAAGAAAAATTACCC+TGG + chr3_4:68334817-68334836 None:intergenic 30.0%
TTTGAACTTAGAATCTTGCT+TGG - chr3_4:68335004-68335023 Msa0516800:intron 30.0%
! TGAGACATATTCCGTTATTT+TGG - chr3_4:68335226-68335245 Msa0516800:intron 30.0%
! ATTTTTATCCCATACTAGTC+CGG - chr3_4:68335432-68335451 Msa0516800:intron 30.0%
GTAAAAACTAACTATCAAGG+GGG - chr3_4:68335629-68335648 Msa0516800:intron 30.0%
ATTCAGCAATATGAAATGCT+TGG + chr3_4:68335682-68335701 None:intergenic 30.0%
ATACCTAAGTCTCTATTTGT+TGG - chr3_4:68335989-68336008 Msa0516800:intron 30.0%
!!! CCCTTTTGAGTTTTTTTAAG+CGG + chr3_4:68336060-68336079 None:intergenic 30.0%
CCGCTTAAAAAAACTCAAAA+GGG - chr3_4:68336057-68336076 Msa0516800:intron 30.0%
ATACTCCAAAAGAAGAATAC+AGG + chr3_4:68336163-68336182 None:intergenic 30.0%
TGTTTCGAATCAAACAATAC+TGG + chr3_4:68336280-68336299 None:intergenic 30.0%
! CAAGATCCGTAATTTTCTAA+TGG - chr3_4:68336298-68336317 Msa0516800:intron 30.0%
GTAGATCTGCAATCAAATAT+CGG - chr3_4:68336320-68336339 Msa0516800:intron 30.0%
TAGATCTGCAATCAAATATC+GGG - chr3_4:68336321-68336340 Msa0516800:intron 30.0%
AACTTGACAATTTCTACCTA+TGG + chr3_4:68336396-68336415 None:intergenic 30.0%
! CAATGGATTTGATGAAGATT+TGG - chr3_4:68336428-68336447 Msa0516800:intron 30.0%
!!! AGCTTGTGCTATTTTCATAT+AGG - chr3_4:68336531-68336550 Msa0516800:intron 30.0%
AGTTAGTGAATACAACATAC+AGG + chr3_4:68336760-68336779 None:intergenic 30.0%
AAAGATATAGGAGATAGCAT+TGG + chr3_4:68336796-68336815 None:intergenic 30.0%
TTGATACAAACATATACCAG+AGG + chr3_4:68336860-68336879 None:intergenic 30.0%
AATCGAGGTTAATTGAATCT+AGG - chr3_4:68337013-68337032 Msa0516800:intron 30.0%
AAAAATAGGGGCAAAACTAA+TGG + chr3_4:68337050-68337069 None:intergenic 30.0%
!!! TTAGTTTTGCCCCTATTTTT+TGG - chr3_4:68337050-68337069 Msa0516800:intron 30.0%
!!! TAGTTTTGCCCCTATTTTTT+GGG - chr3_4:68337051-68337070 Msa0516800:intron 30.0%
!! ATTTGTTATTTCCAAGAGTG+GGG + chr3_4:68337105-68337124 None:intergenic 30.0%
!! GATTTGTTATTTCCAAGAGT+GGG + chr3_4:68337106-68337125 None:intergenic 30.0%
TAACAAATCCCTACCATTTA+AGG - chr3_4:68337117-68337136 Msa0516800:CDS 30.0%
AACAAATCCCTACCATTTAA+GGG - chr3_4:68337118-68337137 Msa0516800:CDS 30.0%
GATTATTTCCCTTAAATGGT+AGG + chr3_4:68337129-68337148 None:intergenic 30.0%
GGATGATTATTTCCCTTAAA+TGG + chr3_4:68337133-68337152 None:intergenic 30.0%
TCTTCATATGACATATGTGA+TGG - chr3_4:68337155-68337174 Msa0516800:intron 30.0%
!! GATGTATTTTTGCCAAATCT+TGG - chr3_4:68337224-68337243 Msa0516800:intron 30.0%
!! TGTATTTTTGCCAAATCTTG+GGG - chr3_4:68337226-68337245 Msa0516800:intron 30.0%
! ATATGATGGTGAATTCACTT+TGG - chr3_4:68337315-68337334 Msa0516800:intron 30.0%
ATATAGTATTTGGATGCAAG+GGG + chr3_4:68337377-68337396 None:intergenic 30.0%
CAGAAATGCATAAAATTGCA+AGG + chr3_4:68337607-68337626 None:intergenic 30.0%
AGAAACTAATGAAGCTAAGA+TGG + chr3_4:68337632-68337651 None:intergenic 30.0%
! TCTTAGCTTCATTAGTTTCT+AGG - chr3_4:68337632-68337651 Msa0516800:intron 30.0%
! CTTAGCTTCATTAGTTTCTA+GGG - chr3_4:68337633-68337652 Msa0516800:intron 30.0%
! TTAGCTTCATTAGTTTCTAG+GGG - chr3_4:68337634-68337653 Msa0516800:intron 30.0%
TTCAAAAGCTAGAACTTGAA+AGG - chr3_4:68337824-68337843 Msa0516800:intron 30.0%
TCAAAAGCTAGAACTTGAAA+GGG - chr3_4:68337825-68337844 Msa0516800:intron 30.0%
! ATAGTGTTTCAGTTTTGCTT+TGG + chr3_4:68337859-68337878 None:intergenic 30.0%
! GTTGTTGTTGTGATTATTCT+GGG + chr3_4:68337886-68337905 None:intergenic 30.0%
! TGTTGTTGTTGTGATTATTC+TGG + chr3_4:68337887-68337906 None:intergenic 30.0%
TTACAACTACTGCTTTGTAA+TGG - chr3_4:68337933-68337952 Msa0516800:intron 30.0%
TGCTTTGTAATGGTAAAGAT+GGG - chr3_4:68337943-68337962 Msa0516800:intron 30.0%
!! TTGGATTGTAGTTTTTAGAG+AGG - chr3_4:68338045-68338064 Msa0516800:intron 30.0%
!! TAGTTTTTAGAGAGGACTTT+TGG - chr3_4:68338053-68338072 Msa0516800:intron 30.0%
TTACAACTACTGCTTTGTAA+TGG - chr3_4:68337933-68337952 Msa0516800:intron 30.0%
TGCTTTGTAATGGTAAAGAT+GGG - chr3_4:68337943-68337962 Msa0516800:intron 30.0%
!! TTGGATTGTAGTTTTTAGAG+AGG - chr3_4:68338045-68338064 Msa0516800:intron 30.0%
!! TAGTTTTTAGAGAGGACTTT+TGG - chr3_4:68338053-68338072 Msa0516800:intron 30.0%
GTTAAAGAATTGGATTGAGA+TGG + chr3_4:68338571-68338590 None:intergenic 30.0%
ATACTAAGGGAATAAAGATC+AGG + chr3_4:68338752-68338771 None:intergenic 30.0%
TCCCTTAGTATAATACTGAT+TGG - chr3_4:68338761-68338780 Msa0516800:CDS 30.0%
! ATACTGATTGGAAATTTGGA+AGG - chr3_4:68338773-68338792 Msa0516800:CDS 30.0%
!! ATTTGTTTTTCCGTCTCAAT+AGG - chr3_4:68338912-68338931 Msa0516800:CDS 30.0%
! ATTTGTTGATCCAACCTTAT+GGG + chr3_4:68339069-68339088 None:intergenic 30.0%
!! AATTTGTTGATCCAACCTTA+TGG + chr3_4:68339070-68339089 None:intergenic 30.0%
GAAGGAACATTAAGTTTACA+GGG + chr3_4:68339111-68339130 None:intergenic 30.0%
TGAAGGAACATTAAGTTTAC+AGG + chr3_4:68339112-68339131 None:intergenic 30.0%
TGTAAATATATATCTCTGGG+CGG + chr3_4:68339251-68339270 None:intergenic 30.0%
!!! TATATGTTTTAAGGTACCTG+TGG - chr3_4:68339293-68339312 Msa0516800:intron 30.0%
!! ATGTGTTTAACTTGTAGAGT+TGG - chr3_4:68339388-68339407 Msa0516800:intron 30.0%
!!! TATCGTTTTGAGGTTCTTTA+AGG - chr3_4:68339412-68339431 Msa0516800:five_prime_UTR 30.0%
CTCATATGCAATGTTAAGAT+TGG - chr3_4:68339609-68339628 Msa0516800:five_prime_UTR 30.0%
AGAAGAGAGAAGGGTTAAAA+GGG + chr3_4:68332993-68333012 None:intergenic 35.0%
! CGTTTGTTGAGAAGTGATTA+TGG - chr3_4:68333245-68333264 Msa0516800:three_prime_UTR 35.0%
TTGTTGAGAAGTGATTATGG+CGG - chr3_4:68333248-68333267 Msa0516800:three_prime_UTR 35.0%
!! TTCAGATTCTGATCGGTTTT+GGG + chr3_4:68333372-68333391 None:intergenic 35.0%
ATGAAACCATGGTTACCATT+TGG + chr3_4:68333456-68333475 None:intergenic 35.0%
AAATGGTAACCATGGTTTCA+TGG - chr3_4:68333455-68333474 Msa0516800:CDS 35.0%
AGAATCAGCATTTGGTTGAT+GGG - chr3_4:68333514-68333533 Msa0516800:intron 35.0%
GTTGTCAAAACTGAATCCTA+TGG - chr3_4:68333593-68333612 Msa0516800:intron 35.0%
TAATTAGTAACCAGTGAAGG+TGG + chr3_4:68333633-68333652 None:intergenic 35.0%
GCTAATGCTACTGCTAATAA+TGG - chr3_4:68333753-68333772 Msa0516800:intron 35.0%
AAAATATAGCCGTTTCTACC+TGG + chr3_4:68334158-68334177 None:intergenic 35.0%
CTATAACAACACAAACGACA+AGG + chr3_4:68334467-68334486 None:intergenic 35.0%
TTCGTTGAGTTTACTGATGA+AGG - chr3_4:68334599-68334618 Msa0516800:intron 35.0%
!! AACGGTTTTATGTCTACAGT+TGG - chr3_4:68334687-68334706 Msa0516800:intron 35.0%
CAATGGATAATATCCAAGCA+TGG + chr3_4:68334742-68334761 None:intergenic 35.0%
GGCAAAAAAGTTGGATTAAC+AGG + chr3_4:68334795-68334814 None:intergenic 35.0%
!!! TTAATCCAACTTTTTTGCCC+AGG - chr3_4:68334796-68334815 Msa0516800:intron 35.0%
!!! TAATCCAACTTTTTTGCCCA+GGG - chr3_4:68334797-68334816 Msa0516800:intron 35.0%
TTCTTAGAGATTCCTATTGC+AGG - chr3_4:68334829-68334848 Msa0516800:intron 35.0%
! TGTTTTGTAGAACCTGCAAT+AGG + chr3_4:68334844-68334863 None:intergenic 35.0%
GAAATACAGCATCGTTAGAA+AGG + chr3_4:68334909-68334928 None:intergenic 35.0%
CACTTCTTTGAATCTATCTG+TGG - chr3_4:68335136-68335155 Msa0516800:intron 35.0%
TTTGTGGCTATTCATTGAAC+TGG - chr3_4:68335164-68335183 Msa0516800:intron 35.0%
TTGTGGCTATTCATTGAACT+GGG - chr3_4:68335165-68335184 Msa0516800:intron 35.0%
TACCAAAAAGCCACATAAAC+CGG + chr3_4:68335454-68335473 None:intergenic 35.0%
GCATTTCATATTGCTGAATG+CGG - chr3_4:68335683-68335702 Msa0516800:intron 35.0%
TAGTGAACTTGGGTATTATG+AGG + chr3_4:68335718-68335737 None:intergenic 35.0%
! GTGCTTATCAAATGGTGTTA+TGG + chr3_4:68335862-68335881 None:intergenic 35.0%
!!! TAGCTCTAGCTAGCTTTTAA+GGG + chr3_4:68335905-68335924 None:intergenic 35.0%
!!! ATAGCTCTAGCTAGCTTTTA+AGG + chr3_4:68335906-68335925 None:intergenic 35.0%
GTACCAACAAATAGAGACTT+AGG + chr3_4:68335995-68336014 None:intergenic 35.0%
CGTACTTCCCTATTAAACAT+TGG - chr3_4:68336034-68336053 Msa0516800:intron 35.0%
TAAGCGGCCAATGTTTAATA+GGG + chr3_4:68336044-68336063 None:intergenic 35.0%
TTAAGCGGCCAATGTTTAAT+AGG + chr3_4:68336045-68336064 None:intergenic 35.0%
GCCGCTTAAAAAAACTCAAA+AGG - chr3_4:68336056-68336075 Msa0516800:intron 35.0%
ATACTCCCAAAGAAGAATGA+GGG + chr3_4:68336098-68336117 None:intergenic 35.0%
! ATCCTCCTGTATTCTTCTTT+TGG - chr3_4:68336155-68336174 Msa0516800:intron 35.0%
TTTACTAGAGAAATGCACAG+AGG + chr3_4:68336250-68336269 None:intergenic 35.0%
TTCATCTACATTGAAGCCAT+AGG - chr3_4:68336377-68336396 Msa0516800:intron 35.0%
AAGTTCTGTATCTTCGTCAA+TGG - chr3_4:68336411-68336430 Msa0516800:intron 35.0%
! TTGTGATGATGTTCTTGCAT+AGG - chr3_4:68336599-68336618 Msa0516800:intron 35.0%
ATGTTCTTGCATAGGAAGTT+CGG - chr3_4:68336607-68336626 Msa0516800:intron 35.0%
GAGTGCACATGAAAAGATAT+AGG + chr3_4:68336808-68336827 None:intergenic 35.0%
AGGTTGAAATAATCGCACAA+AGG + chr3_4:68336909-68336928 None:intergenic 35.0%
TTTCAACCTTTCTGCAAAAC+TGG - chr3_4:68336920-68336939 Msa0516800:intron 35.0%
ACCAATCTATGACCATAATG+TGG - chr3_4:68336943-68336962 Msa0516800:intron 35.0%
ACCACATTATGGTCATAGAT+TGG + chr3_4:68336947-68336966 None:intergenic 35.0%
GACCATAATGTGGTGAAAAT+AGG - chr3_4:68336953-68336972 Msa0516800:intron 35.0%
! AGCCTATTTTCACCACATTA+TGG + chr3_4:68336958-68336977 None:intergenic 35.0%
!! GGATTTGTTATTTCCAAGAG+TGG + chr3_4:68337107-68337126 None:intergenic 35.0%
CACATATGTCATATGAAGAG+TGG + chr3_4:68337154-68337173 None:intergenic 35.0%
!! ACATATGTGATGGTGACTTT+TGG - chr3_4:68337165-68337184 Msa0516800:intron 35.0%
!! CATATGTGATGGTGACTTTT+GGG - chr3_4:68337166-68337185 Msa0516800:intron 35.0%
AACTAATGAACCCCAAGATT+TGG + chr3_4:68337239-68337258 None:intergenic 35.0%
!! ATCTTGGGGTTCATTAGTTT+TGG - chr3_4:68337240-68337259 Msa0516800:intron 35.0%
GAAGAAAATGCAACCAGATT+GGG + chr3_4:68337473-68337492 None:intergenic 35.0%
GAAGACAACGAAAAAGAAGT+GGG + chr3_4:68337504-68337523 None:intergenic 35.0%
AGAAGACAACGAAAAAGAAG+TGG + chr3_4:68337505-68337524 None:intergenic 35.0%
!!! TTTAATCGGTGTGGTTTTGA+TGG - chr3_4:68337776-68337795 Msa0516800:intron 35.0%
!!! TTAATCGGTGTGGTTTTGAT+GGG - chr3_4:68337777-68337796 Msa0516800:intron 35.0%
!! TTTTGATGGGTGGATTCAAA+TGG - chr3_4:68337790-68337809 Msa0516800:intron 35.0%
CTGCTTTGTAATGGTAAAGA+TGG - chr3_4:68337942-68337961 Msa0516800:intron 35.0%
GCTTTGTAATGGTAAAGATG+GGG - chr3_4:68337944-68337963 Msa0516800:intron 35.0%
ATTGAGATTGAGAGATGCAT+TGG - chr3_4:68338026-68338045 Msa0516800:intron 35.0%
CTGCTTTGTAATGGTAAAGA+TGG - chr3_4:68337942-68337961 Msa0516800:intron 35.0%
GCTTTGTAATGGTAAAGATG+GGG - chr3_4:68337944-68337963 Msa0516800:intron 35.0%
ATTGAGATTGAGAGATGCAT+TGG - chr3_4:68338026-68338045 Msa0516800:intron 35.0%
!! TTATATATGGATTGGTCGGT+CGG - chr3_4:68338494-68338513 Msa0516800:CDS 35.0%
! GGTCATATGGGTTAAAGAAT+TGG + chr3_4:68338581-68338600 None:intergenic 35.0%
CAAATAGTAGCCTATTGAGA+CGG + chr3_4:68338897-68338916 None:intergenic 35.0%
!! TATTTTTGCCTCATTCTTGC+AGG - chr3_4:68338990-68339009 Msa0516800:CDS 35.0%
!!! TTCTTATGTTTTGGCATGCA+GGG - chr3_4:68339140-68339159 Msa0516800:CDS 35.0%
GAATCATCCTTCATGTTTCT+AGG - chr3_4:68339217-68339236 Msa0516800:exon 35.0%
CATTCATCCTAGAAACATGA+AGG + chr3_4:68339227-68339246 None:intergenic 35.0%
!! CTTCATGTTTCTAGGATGAA+TGG - chr3_4:68339225-68339244 Msa0516800:exon 35.0%
! AGATACCATACTGCAAGTTT+TGG + chr3_4:68339339-68339358 None:intergenic 35.0%
!! TGGTATCTTTTGTTTCTCGT+TGG - chr3_4:68339351-68339370 Msa0516800:intron 35.0%
!! GGTATCTTTTGTTTCTCGTT+GGG - chr3_4:68339352-68339371 Msa0516800:intron 35.0%
!! GTATCTTTTGTTTCTCGTTG+GGG - chr3_4:68339353-68339372 Msa0516800:intron 35.0%
! TAGAGTTGGATATCGTTTTG+AGG - chr3_4:68339402-68339421 Msa0516800:five_prime_UTR 35.0%
!! CTTTAAGGCTTAAGTTATGC+TGG - chr3_4:68339427-68339446 Msa0516800:five_prime_UTR 35.0%
! TGTGAAAGTGATGACGATGA+AGG + chr3_4:68332888-68332907 None:intergenic 40.0%
!!! TTAACGCAGCACTGACTTTT+TGG + chr3_4:68332950-68332969 None:intergenic 40.0%
GAGAAGAGAGAAGGGTTAAA+AGG + chr3_4:68332994-68333013 None:intergenic 40.0%
AAGAGAGAGAGAAGAGAGAA+GGG + chr3_4:68333002-68333021 None:intergenic 40.0%
!! CTCACTGGAAGAATCGATTT+TGG + chr3_4:68333292-68333311 None:intergenic 40.0%
CGATTCTTCCAGTGAGAATT+TGG - chr3_4:68333296-68333315 Msa0516800:CDS 40.0%
ACTGTTGTCCAAATTCTCAC+TGG + chr3_4:68333307-68333326 None:intergenic 40.0%
!! GGACAACAGTGTTGTTTCAT+CGG - chr3_4:68333317-68333336 Msa0516800:intron 40.0%
!!! ATTCTGATCGGTTTTGGGTT+TGG + chr3_4:68333367-68333386 None:intergenic 40.0%
!! GTTCAGATTCTGATCGGTTT+TGG + chr3_4:68333373-68333392 None:intergenic 40.0%
!! ACCAACAACGTTGGTGTTAA+CGG + chr3_4:68333403-68333422 None:intergenic 40.0%
ATTGATCACACCAACAACGT+TGG + chr3_4:68333412-68333431 None:intergenic 40.0%
CAACAAGACAGTGTTCCAAA+TGG - chr3_4:68333438-68333457 Msa0516800:CDS 40.0%
AGTGTTCCAAATGGTAACCA+TGG - chr3_4:68333447-68333466 Msa0516800:CDS 40.0%
TTTGATGAGCCATGAAACCA+TGG + chr3_4:68333467-68333486 None:intergenic 40.0%
TGGTTTCATGGCTCATCAAA+TGG - chr3_4:68333467-68333486 Msa0516800:intron 40.0%
GGTTTCATGGCTCATCAAAT+GGG - chr3_4:68333468-68333487 Msa0516800:intron 40.0%
CAGAATCAGCATTTGGTTGA+TGG - chr3_4:68333513-68333532 Msa0516800:intron 40.0%
!! ATTTGGTTGATGGGTATGGT+GGG - chr3_4:68333523-68333542 Msa0516800:intron 40.0%
AGAGTTTCAAGCGTGAAATG+AGG - chr3_4:68333556-68333575 Msa0516800:intron 40.0%
GAGTTTCAAGCGTGAAATGA+GGG - chr3_4:68333557-68333576 Msa0516800:intron 40.0%
AAAACTGAATCCTATGGCTG+AGG - chr3_4:68333599-68333618 Msa0516800:intron 40.0%
TGATTGATGTTGTGTTGCAG+AGG - chr3_4:68333880-68333899 Msa0516800:intron 40.0%
! GCGAAGAGTGTATCATAAGA+TGG - chr3_4:68333926-68333945 Msa0516800:intron 40.0%
! AAAGAGAAGAGATGATTCGG+AGG - chr3_4:68333958-68333977 Msa0516800:intron 40.0%
TGTGTCTGACATTGATCAAC+AGG - chr3_4:68333989-68334008 Msa0516800:intron 40.0%
TCTGACATTGATCAACAGGT+AGG - chr3_4:68333993-68334012 Msa0516800:intron 40.0%
ATGTGATAGAGCTCCATACA+TGG + chr3_4:68334315-68334334 None:intergenic 40.0%
ATTGATTGGAGCTCCATACA+TGG + chr3_4:68334409-68334428 None:intergenic 40.0%
TAACGGAACACGTGTATCTA+AGG + chr3_4:68334444-68334463 None:intergenic 40.0%
CAACACAAACGACAAGGTAA+CGG + chr3_4:68334461-68334480 None:intergenic 40.0%
GGTCCACCATCATTAAGAAA+AGG + chr3_4:68334493-68334512 None:intergenic 40.0%
! GAGTAGTTGACTTAGTAACG+TGG + chr3_4:68334514-68334533 None:intergenic 40.0%
AACTACTCTTACGTGAGCAT+AGG - chr3_4:68334526-68334545 Msa0516800:intron 40.0%
GCAAACCGAAGAATGGAATT+GGG + chr3_4:68334578-68334597 None:intergenic 40.0%
TGCAAACCGAAGAATGGAAT+TGG + chr3_4:68334579-68334598 None:intergenic 40.0%
AACGAATGCAAACCGAAGAA+TGG + chr3_4:68334585-68334604 None:intergenic 40.0%
TTGGCGTTTCCCTGAATTAA+CGG - chr3_4:68334669-68334688 Msa0516800:intron 40.0%
! TTATGTCTACAGTTGGTGCT+AGG - chr3_4:68334694-68334713 Msa0516800:intron 40.0%
!! TATGTCTACAGTTGGTGCTA+GGG - chr3_4:68334695-68334714 Msa0516800:intron 40.0%
ATTACCCTGGGCAAAAAAGT+TGG + chr3_4:68334804-68334823 None:intergenic 40.0%
TTGCACAAATCTCGACAAGA+AGG - chr3_4:68334971-68334990 Msa0516800:intron 40.0%
ACAAATCTCGACAAGAAGGT+AGG - chr3_4:68334975-68334994 Msa0516800:intron 40.0%
GAACTTAGAATCTTGCTTGG+AGG - chr3_4:68335007-68335026 Msa0516800:intron 40.0%
GGGATTACCATCATTCAACT+CGG - chr3_4:68335355-68335374 Msa0516800:intron 40.0%
! AAGCAATCCGAGTTGAATGA+TGG + chr3_4:68335365-68335384 None:intergenic 40.0%
!! TTCAACTCGGATTGCTTTTG+TGG - chr3_4:68335368-68335387 Msa0516800:intron 40.0%
!! CACATAAACCGGACTAGTAT+GGG + chr3_4:68335443-68335462 None:intergenic 40.0%
AGAATGGTTCTCAAGTGCTA+GGG + chr3_4:68335609-68335628 None:intergenic 40.0%
! AAATGCTTGGCGGAGTATTT+AGG + chr3_4:68335669-68335688 None:intergenic 40.0%
CAGCAATATGAAATGCTTGG+CGG + chr3_4:68335679-68335698 None:intergenic 40.0%
ATATTGCTGAATGCGGACTT+AGG - chr3_4:68335690-68335709 Msa0516800:intron 40.0%
ACCCAAGTTCACTAAGTACT+TGG - chr3_4:68335724-68335743 Msa0516800:intron 40.0%
CCCAAGTACTTAGTGAACTT+GGG + chr3_4:68335728-68335747 None:intergenic 40.0%
CCCAAGTTCACTAAGTACTT+GGG - chr3_4:68335725-68335744 Msa0516800:intron 40.0%
GCAAGAAAAAAGGATGAGTG+AGG + chr3_4:68335796-68335815 None:intergenic 40.0%
!! GTGCAAAGGTGCTTATCAAA+TGG + chr3_4:68335870-68335889 None:intergenic 40.0%
TGATAAGCACCTTTGCACTT+TGG - chr3_4:68335872-68335891 Msa0516800:intron 40.0%
GATAAGCACCTTTGCACTTT+GGG - chr3_4:68335873-68335892 Msa0516800:intron 40.0%
!!! TCTAGCTAGCTTTTAAGGGA+GGG + chr3_4:68335901-68335920 None:intergenic 40.0%
AAAGCTAGCTAGAGCTATCA+AGG - chr3_4:68335908-68335927 Msa0516800:intron 40.0%
AAGCTAGCTAGAGCTATCAA+GGG - chr3_4:68335909-68335928 Msa0516800:intron 40.0%
TACTACTCGATGTGGAACTT+AGG - chr3_4:68335957-68335976 Msa0516800:intron 40.0%
ATCCTCCCTCATTCTTCTTT+GGG - chr3_4:68336090-68336109 Msa0516800:intron 40.0%
CATACTCCCAAAGAAGAATG+AGG + chr3_4:68336099-68336118 None:intergenic 40.0%
! GCAAGCTACACCTTTTCAAA+AGG - chr3_4:68336122-68336141 Msa0516800:intron 40.0%
!! CTTAGCAGCTCCTTTTGAAA+AGG + chr3_4:68336135-68336154 None:intergenic 40.0%
CTCCAAAAGAAGAATACAGG+AGG + chr3_4:68336160-68336179 None:intergenic 40.0%
AGCAAGCTACACCTTATCTT+AGG - chr3_4:68336186-68336205 Msa0516800:intron 40.0%
GCAAGCTACACCTTATCTTA+GGG - chr3_4:68336187-68336206 Msa0516800:intron 40.0%
TGGCTTCAATGTAGATGAAG+AGG + chr3_4:68336376-68336395 None:intergenic 40.0%
TGAAAATAGCACAAGCTTGC+TGG + chr3_4:68336528-68336547 None:intergenic 40.0%
! TCATATAGGAGCCGTGTTTT+AGG - chr3_4:68336545-68336564 Msa0516800:intron 40.0%
CTCAGAATCGACCTAAAACA+CGG + chr3_4:68336559-68336578 None:intergenic 40.0%
TGTTCTTGCATAGGAAGTTC+GGG - chr3_4:68336608-68336627 Msa0516800:intron 40.0%
ATAGTTAACGGAGCATGTGA+GGG + chr3_4:68336707-68336726 None:intergenic 40.0%
AATAGTTAACGGAGCATGTG+AGG + chr3_4:68336708-68336727 None:intergenic 40.0%
TTCATGTGCACTCTCCTAAT+AGG - chr3_4:68336815-68336834 Msa0516800:intron 40.0%
! ATTGGTCCAGTTTTGCAGAA+AGG + chr3_4:68336929-68336948 None:intergenic 40.0%
AATAGGCTGTGAATCTGTGA+TGG - chr3_4:68336970-68336989 Msa0516800:intron 40.0%
ATTTGGATGCAAGGGGATTA+GGG + chr3_4:68337370-68337389 None:intergenic 40.0%
TATTTGGATGCAAGGGGATT+AGG + chr3_4:68337371-68337390 None:intergenic 40.0%
AAGGTTGGGTCAACAACAAA+AGG + chr3_4:68337440-68337459 None:intergenic 40.0%
GGAAGAAAATGCAACCAGAT+TGG + chr3_4:68337474-68337493 None:intergenic 40.0%
AACGAAAAAGAAGTGGGAGA+CGG + chr3_4:68337498-68337517 None:intergenic 40.0%
GACACGACATCTTATTGTGT+GGG + chr3_4:68337579-68337598 None:intergenic 40.0%
AGACACGACATCTTATTGTG+TGG + chr3_4:68337580-68337599 None:intergenic 40.0%
AGGTCGGTTAACGGTTTAAT+CGG - chr3_4:68337762-68337781 Msa0516800:CDS 40.0%
ACAGGAGGTTGAAATAGACA+AGG - chr3_4:68337982-68338001 Msa0516800:intron 40.0%
AAGGTGAAGAGAAGAACAAG+AGG - chr3_4:68338001-68338020 Msa0516800:intron 40.0%
ACAGGAGGTTGAAATAGACA+AGG - chr3_4:68337982-68338001 Msa0516800:intron 40.0%
AAGGTGAAGAGAAGAACAAG+AGG - chr3_4:68338001-68338020 Msa0516800:intron 40.0%
GTAAAGAATTGAGATGGGAC+AGG - chr3_4:68338398-68338417 Msa0516800:intron 40.0%
GAAGTTGAAACTAATAGGGC+TGG + chr3_4:68338683-68338702 None:intergenic 40.0%
CTGATTGGAAATTTGGAAGG+TGG - chr3_4:68338776-68338795 Msa0516800:CDS 40.0%
!!! TTTTGGGTTCACTACCCATA+AGG - chr3_4:68339052-68339071 Msa0516800:CDS 40.0%
TACAGGGCAGATGAAATGAA+AGG + chr3_4:68339095-68339114 None:intergenic 40.0%
!!! GTTCTTATGTTTTGGCATGC+AGG - chr3_4:68339139-68339158 Msa0516800:CDS 40.0%
TGAAGGATGATTCAGTGCAT+GGG + chr3_4:68339210-68339229 None:intergenic 40.0%
ATGAAGGATGATTCAGTGCA+TGG + chr3_4:68339211-68339230 None:intergenic 40.0%
TGTTGCCAAAACTTGCAGTA+TGG - chr3_4:68339331-68339350 Msa0516800:intron 40.0%
GGTTGGATGTTTGTAACATC+CGG - chr3_4:68339476-68339495 Msa0516800:five_prime_UTR 40.0%
! TAAGATTGGCTGATTCTCTG+TGG - chr3_4:68339623-68339642 Msa0516800:five_prime_UTR 40.0%
GAAGAGAGAGAGAAGAGAGA+AGG + chr3_4:68333003-68333022 None:intergenic 45.0%
TGTTTCATCGGACTCAACTG+AGG - chr3_4:68333329-68333348 Msa0516800:intron 45.0%
GCTGGTGTTCAGATTCTGAT+CGG + chr3_4:68333379-68333398 None:intergenic 45.0%
ACCGTTAACACCAACGTTGT+TGG - chr3_4:68333399-68333418 Msa0516800:intron 45.0%
CATCAAATGGGTCAGATGCA+TGG - chr3_4:68333480-68333499 Msa0516800:intron 45.0%
ATGGGTCAGATGCATGGAAA+TGG - chr3_4:68333486-68333505 Msa0516800:intron 45.0%
TGGGTCAGATGCATGGAAAT+GGG - chr3_4:68333487-68333506 Msa0516800:intron 45.0%
TGGGGTTCAGAATCAGCATT+TGG - chr3_4:68333506-68333525 Msa0516800:intron 45.0%
!! CAGCATTTGGTTGATGGGTA+TGG - chr3_4:68333519-68333538 Msa0516800:intron 45.0%
!! CATTTGGTTGATGGGTATGG+TGG - chr3_4:68333522-68333541 Msa0516800:intron 45.0%
! TTGATGGGTATGGTGGGAAT+GGG - chr3_4:68333529-68333548 Msa0516800:intron 45.0%
CAAGCGTGAAATGAGGGATT+TGG - chr3_4:68333563-68333582 Msa0516800:intron 45.0%
TATCATGGCTACTTAGCTGC+TGG - chr3_4:68333651-68333670 Msa0516800:intron 45.0%
GTTGTGTTGCAGAGGAAGAA+TGG - chr3_4:68333888-68333907 Msa0516800:intron 45.0%
GGCTGCGTCTTACTATTGAT+TGG + chr3_4:68334423-68334442 None:intergenic 45.0%
! GTTGTTGATTGCCGAGTATG+CGG - chr3_4:68334548-68334567 Msa0516800:intron 45.0%
! TTGTTGATTGCCGAGTATGC+GGG - chr3_4:68334549-68334568 Msa0516800:intron 45.0%
GGGATCCCAATTCCATTCTT+CGG - chr3_4:68334570-68334589 Msa0516800:intron 45.0%
TTTGAAGGCAGCACTCTCAA+TGG + chr3_4:68334759-68334778 None:intergenic 45.0%
GGTGCAATAGCAGTCTTTGA+AGG + chr3_4:68334774-68334793 None:intergenic 45.0%
ATCTCGACAAGAAGGTAGGT+TGG - chr3_4:68334979-68334998 Msa0516800:intron 45.0%
TCTCGACAAGAAGGTAGGTT+GGG - chr3_4:68334980-68334999 Msa0516800:intron 45.0%
CTTTGAATCTATCTGTGGCG+AGG - chr3_4:68335141-68335160 Msa0516800:intron 45.0%
TCATGTAGGTTCAACGTCTG+AGG - chr3_4:68335325-68335344 Msa0516800:intron 45.0%
! TTCAACGTCTGAGGCTTCTT+GGG - chr3_4:68335334-68335353 Msa0516800:intron 45.0%
! TGCTTTTGTGGAGTTTGCAG+TGG - chr3_4:68335380-68335399 Msa0516800:intron 45.0%
!! CCACATAAACCGGACTAGTA+TGG + chr3_4:68335444-68335463 None:intergenic 45.0%
CCATACTAGTCCGGTTTATG+TGG - chr3_4:68335441-68335460 Msa0516800:intron 45.0%
! GTCCGGTTTATGTGGCTTTT+TGG - chr3_4:68335449-68335468 Msa0516800:intron 45.0%
!! TATTTTCGGAAGGTGCAGCA+GGG + chr3_4:68335558-68335577 None:intergenic 45.0%
!! TTATTTTCGGAAGGTGCAGC+AGG + chr3_4:68335559-68335578 None:intergenic 45.0%
CAGAATGGTTCTCAAGTGCT+AGG + chr3_4:68335610-68335629 None:intergenic 45.0%
GCCCAAGTACTTAGTGAACT+TGG + chr3_4:68335729-68335748 None:intergenic 45.0%
! ATCGTGACATTGACTGTCAG+GGG + chr3_4:68335756-68335775 None:intergenic 45.0%
! CATCGTGACATTGACTGTCA+GGG + chr3_4:68335757-68335776 None:intergenic 45.0%
! GATTGTCAGTGCCTCTGAAA+GGG + chr3_4:68335837-68335856 None:intergenic 45.0%
TGATTGTCAGTGCCTCTGAA+AGG + chr3_4:68335838-68335857 None:intergenic 45.0%
!!! CTCTAGCTAGCTTTTAAGGG+AGG + chr3_4:68335902-68335921 None:intergenic 45.0%
AGCTAGCTAGAGCTATCAAG+GGG - chr3_4:68335910-68335929 Msa0516800:intron 45.0%
GCATCTCATACTACTCGATG+TGG - chr3_4:68335949-68335968 Msa0516800:intron 45.0%
GATCCTCCCTCATTCTTCTT+TGG - chr3_4:68336089-68336108 Msa0516800:intron 45.0%
CTGCAATCAAATATCGGGCA+TGG - chr3_4:68336326-68336345 Msa0516800:intron 45.0%
GTAGATGAAGAGGCAGTGAA+TGG + chr3_4:68336366-68336385 None:intergenic 45.0%
TAGTTAACGGAGCATGTGAG+GGG + chr3_4:68336706-68336725 None:intergenic 45.0%
!! TAGGAGATAGCATTGGCTCA+AGG + chr3_4:68336789-68336808 None:intergenic 45.0%
GCACTCTCCTAATAGGAGAA+TGG - chr3_4:68336822-68336841 Msa0516800:intron 45.0%
TTTGGATGCAAGGGGATTAG+GGG + chr3_4:68337369-68337388 None:intergenic 45.0%
GACTCAACTGAAGTAAGCCT+AGG + chr3_4:68337409-68337428 None:intergenic 45.0%
! GCTTCATTAGTTTCTAGGGG+TGG - chr3_4:68337637-68337656 Msa0516800:intron 45.0%
! AGTTTCTAGGGGTGGACAAA+CGG - chr3_4:68337645-68337664 Msa0516800:intron 45.0%
TCCAATCCGAACAATACCGT+GGG - chr3_4:68337697-68337716 Msa0516800:CDS 45.0%
TCTCTGGTTAGGTCGGTTAA+CGG - chr3_4:68337753-68337772 Msa0516800:CDS 45.0%
GGTTAACGGTTTAATCGGTG+TGG - chr3_4:68337767-68337786 Msa0516800:CDS 45.0%
! TAGAGAGGACTTTTGGACTC+TGG - chr3_4:68338060-68338079 Msa0516800:intron 45.0%
! TAGAGAGGACTTTTGGACTC+TGG - chr3_4:68338060-68338079 Msa0516800:intron 45.0%
TGAGATGGACAAGAGTGGAT+CGG + chr3_4:68338556-68338575 None:intergenic 45.0%
TGGATTGAGATGGACAAGAG+TGG + chr3_4:68338561-68338580 None:intergenic 45.0%
TGCTCAGTTTGGATCGGTTA+CGG - chr3_4:68338648-68338667 Msa0516800:intron 45.0%
! AGCTGTAGTGGTGTGGTTTT+GGG - chr3_4:68339036-68339055 Msa0516800:CDS 45.0%
AAGTCTCAACTAAACGCCAC+AGG + chr3_4:68339312-68339331 None:intergenic 45.0%
CAACGAGAGACTTCTATGGT+TGG - chr3_4:68339459-68339478 Msa0516800:five_prime_UTR 45.0%
!!! TTTTTTTTTTTGAAAAAAAT+CGG - chr3_4:68333102-68333121 Msa0516800:three_prime_UTR 5.0%
ATGGCGGTAGCTGAGAATGT+TGG - chr3_4:68333264-68333283 Msa0516800:exon 50.0%
!! AACGTTGGTGTTAACGGTGC+TGG + chr3_4:68333397-68333416 None:intergenic 50.0%
GGGTCAGATGCATGGAAATG+GGG - chr3_4:68333488-68333507 Msa0516800:intron 50.0%
! GTTGATGGGTATGGTGGGAA+TGG - chr3_4:68333528-68333547 Msa0516800:intron 50.0%
! TGATGGGTATGGTGGGAATG+GGG - chr3_4:68333530-68333549 Msa0516800:intron 50.0%
GCGTGAAATGAGGGATTTGG+AGG - chr3_4:68333566-68333585 Msa0516800:intron 50.0%
GGCACAAATTCCTCAGCCAT+AGG + chr3_4:68333612-68333631 None:intergenic 50.0%
GGAATTTGTGCCACCTTCAC+TGG - chr3_4:68333620-68333639 Msa0516800:intron 50.0%
TTAGCTGCTGGACCTAATGC+TGG - chr3_4:68333663-68333682 Msa0516800:intron 50.0%
TAGCTGCTGGACCTAATGCT+GGG - chr3_4:68333664-68333683 Msa0516800:intron 50.0%
GGGTAACCAAACCCAGCATT+AGG + chr3_4:68333678-68333697 None:intergenic 50.0%
CTAGGTTACTGAAGAGCAGC+TGG - chr3_4:68334110-68334129 Msa0516800:intron 50.0%
GCGGCTCTCTTTCTTAACTG+CGG - chr3_4:68334132-68334151 Msa0516800:intron 50.0%
TCTCTTTCTTAACTGCGGCC+AGG - chr3_4:68334137-68334156 Msa0516800:intron 50.0%
TAACTGCGGCCAGGTAGAAA+CGG - chr3_4:68334146-68334165 Msa0516800:intron 50.0%
! TGTTGATTGCCGAGTATGCG+GGG - chr3_4:68334550-68334569 Msa0516800:intron 50.0%
AATTGGGATCCCCGCATACT+CGG + chr3_4:68334562-68334581 None:intergenic 50.0%
! AACCTGTCTGGAACCATGCT+TGG - chr3_4:68334726-68334745 Msa0516800:intron 50.0%
ATCCAAGCATGGTTCCAGAC+AGG + chr3_4:68334731-68334750 None:intergenic 50.0%
TCTATCTGTGGCGAGGTTTG+TGG - chr3_4:68335148-68335167 Msa0516800:intron 50.0%
! GTTCAACGTCTGAGGCTTCT+TGG - chr3_4:68335333-68335352 Msa0516800:intron 50.0%
! TCAACGTCTGAGGCTTCTTG+GGG - chr3_4:68335335-68335354 Msa0516800:intron 50.0%
!! ATTTTCGGAAGGTGCAGCAG+GGG + chr3_4:68335557-68335576 None:intergenic 50.0%
! GCATCGTGACATTGACTGTC+AGG + chr3_4:68335758-68335777 None:intergenic 50.0%
TGAAAGGGCTTACAACGGAG+GGG + chr3_4:68335822-68335841 None:intergenic 50.0%
CTGAAAGGGCTTACAACGGA+GGG + chr3_4:68335823-68335842 None:intergenic 50.0%
TCTGAAAGGGCTTACAACGG+AGG + chr3_4:68335824-68335843 None:intergenic 50.0%
TCCGTTGTAAGCCCTTTCAG+AGG - chr3_4:68335823-68335842 Msa0516800:intron 50.0%
! GCCTCTGAAAGGGCTTACAA+CGG + chr3_4:68335827-68335846 None:intergenic 50.0%
CTCCCAAAGAAGAATGAGGG+AGG + chr3_4:68336095-68336114 None:intergenic 50.0%
GAGGCAGTGAATGGAAAGCA+AGG + chr3_4:68336357-68336376 None:intergenic 50.0%
GCATAGTCACTTGCAGTGAG+TGG + chr3_4:68336481-68336500 None:intergenic 50.0%
CTCACTGCAAGTGACTATGC+TGG - chr3_4:68336481-68336500 Msa0516800:intron 50.0%
TCTTGCATAGGAAGTTCGGG+AGG - chr3_4:68336611-68336630 Msa0516800:intron 50.0%
GGGGGGAGACAACGAATTAT+GGG + chr3_4:68336687-68336706 None:intergenic 50.0%
AGGGGGGAGACAACGAATTA+TGG + chr3_4:68336688-68336707 None:intergenic 50.0%
AGTTAACGGAGCATGTGAGG+GGG + chr3_4:68336705-68336724 None:intergenic 50.0%
TCTTTAGGTAGCCCCACTCT+TGG - chr3_4:68337091-68337110 Msa0516800:intron 50.0%
TGGGCAAGCAACTGAAGGTT+GGG + chr3_4:68337454-68337473 None:intergenic 50.0%
TTGGGCAAGCAACTGAAGGT+TGG + chr3_4:68337455-68337474 None:intergenic 50.0%
CAGATTGGGCAAGCAACTGA+AGG + chr3_4:68337459-68337478 None:intergenic 50.0%
CTTCAGTTGCTTGCCCAATC+TGG - chr3_4:68337457-68337476 Msa0516800:intron 50.0%
GAAAAAGAAGTGGGAGACGG+AGG + chr3_4:68337495-68337514 None:intergenic 50.0%
CTCCAATCCGAACAATACCG+TGG - chr3_4:68337696-68337715 Msa0516800:CDS 50.0%
ACCCACGGTATTGTTCGGAT+TGG + chr3_4:68337701-68337720 None:intergenic 50.0%
AATCCGAACAATACCGTGGG+TGG - chr3_4:68337700-68337719 Msa0516800:CDS 50.0%
TAACCAGAGACACCTACGGA+CGG + chr3_4:68337743-68337762 None:intergenic 50.0%
GACCTAACCAGAGACACCTA+CGG + chr3_4:68337747-68337766 None:intergenic 50.0%
GTAGGTGTCTCTGGTTAGGT+CGG - chr3_4:68337746-68337765 Msa0516800:CDS 50.0%
!!! ATCGGTGTGGTTTTGATGGG+TGG - chr3_4:68337780-68337799 Msa0516800:intron 50.0%
! GTTCTTGTTTGCAAGCCCAG+TGG + chr3_4:68338529-68338548 None:intergenic 50.0%
TGGACAAGAGTGGATCGGTT+CGG + chr3_4:68338551-68338570 None:intergenic 50.0%
CCGATCCAAACTGAGCAATC+CGG + chr3_4:68338645-68338664 None:intergenic 50.0%
CCGGATTGCTCAGTTTGGAT+CGG - chr3_4:68338642-68338661 Msa0516800:intron 50.0%
ACTCTCAGCCTGCAAGAATG+AGG + chr3_4:68339001-68339020 None:intergenic 50.0%
ATTGCTGCACTGAGCTGTAG+TGG - chr3_4:68339024-68339043 Msa0516800:CDS 50.0%
! GAGCTGTAGTGGTGTGGTTT+TGG - chr3_4:68339035-68339054 Msa0516800:CDS 50.0%
GGGTTCACTACCCATAAGGT+TGG - chr3_4:68339056-68339075 Msa0516800:CDS 50.0%
CTCGCAACGAGAGACTTCTA+TGG - chr3_4:68339455-68339474 Msa0516800:five_prime_UTR 50.0%
! GATGGGTATGGTGGGAATGG+GGG - chr3_4:68333531-68333550 Msa0516800:intron 55.0%
GCTGGACCTAATGCTGGGTT+TGG - chr3_4:68333669-68333688 Msa0516800:intron 55.0%
GGTTACTGAAGAGCAGCTGG+CGG - chr3_4:68334113-68334132 Msa0516800:intron 55.0%
! AGGGCTGCTTTGAACCTGTC+TGG - chr3_4:68334714-68334733 Msa0516800:intron 55.0%
GGAGGGGTCGGCAAGAAAAA+AGG + chr3_4:68335806-68335825 None:intergenic 55.0%
GGAGGGTTCCCAAAGTGCAA+AGG + chr3_4:68335884-68335903 None:intergenic 55.0%
GTTAACGGAGCATGTGAGGG+GGG + chr3_4:68336704-68336723 None:intergenic 55.0%
TCTAGGGGTGGACAAACGGT+CGG - chr3_4:68337649-68337668 Msa0516800:intron 55.0%
CCTCCACCCACGGTATTGTT+CGG + chr3_4:68337706-68337725 None:intergenic 55.0%
AGACACCTACGGACGGGAAT+GGG + chr3_4:68337736-68337755 None:intergenic 55.0%
AACCAGAGACACCTACGGAC+GGG + chr3_4:68337742-68337761 None:intergenic 55.0%
GTCCGTAGGTGTCTCTGGTT+AGG - chr3_4:68337742-68337761 Msa0516800:CDS 55.0%
AAGCGCTTGTGAGAGACAGG+AGG - chr3_4:68337967-68337986 Msa0516800:intron 55.0%
AAGCGCTTGTGAGAGACAGG+AGG - chr3_4:68337967-68337986 Msa0516800:intron 55.0%
! GGTCGGCATTGAGTTCCACT+GGG - chr3_4:68338511-68338530 Msa0516800:CDS 55.0%
!! ACGGATTGGGCGGGTCATAT+GGG + chr3_4:68338593-68338612 None:intergenic 55.0%
!! AACGGATTGGGCGGGTCATA+TGG + chr3_4:68338594-68338613 None:intergenic 55.0%
CAGTGTAAATCGAAGCGGGC+GGG + chr3_4:68338620-68338639 None:intergenic 55.0%
CCAGTGTAAATCGAAGCGGG+CGG + chr3_4:68338621-68338640 None:intergenic 55.0%
CGCCCGCTTCGATTTACACT+GGG - chr3_4:68338619-68338638 Msa0516800:intron 55.0%
GGCCCAGTGTAAATCGAAGC+GGG + chr3_4:68338624-68338643 None:intergenic 55.0%
CGGCCCAGTGTAAATCGAAG+CGG + chr3_4:68338625-68338644 None:intergenic 55.0%
CGCTTCGATTTACACTGGGC+CGG - chr3_4:68338623-68338642 Msa0516800:intron 55.0%
TGCACTGAGCTGTAGTGGTG+TGG - chr3_4:68339029-68339048 Msa0516800:CDS 55.0%
!! GCTCGGACTGGTGTCTTTGA+TGG + chr3_4:68339171-68339190 None:intergenic 55.0%
GAGTACGAACAGCACGAGCT+CGG + chr3_4:68339188-68339207 None:intergenic 55.0%
! GAAGGTGCAGCAGGGGAAGT+GGG + chr3_4:68335550-68335569 None:intergenic 60.0%
AGGGCTTACAACGGAGGGGT+CGG + chr3_4:68335818-68335837 None:intergenic 60.0%
CTAGGGGTGGACAAACGGTC+GGG - chr3_4:68337650-68337669 Msa0516800:intron 60.0%
!! GGACAAACGGTCGGGTTGGA+CGG - chr3_4:68337658-68337677 Msa0516800:intron 60.0%
!! ACGGTCGGGTTGGACGGTTT+CGG - chr3_4:68337664-68337683 Msa0516800:intron 60.0%
CCGAACAATACCGTGGGTGG+AGG - chr3_4:68337703-68337722 Msa0516800:CDS 60.0%
GGGTTGAGTTCCTCCACCCA+CGG + chr3_4:68337716-68337735 None:intergenic 60.0%
CTCAACCCATTCCCGTCCGT+AGG - chr3_4:68337728-68337747 Msa0516800:CDS 60.0%
GAGACACCTACGGACGGGAA+TGG + chr3_4:68337737-68337756 None:intergenic 60.0%
TTCCCGTCCGTAGGTGTCTC+TGG - chr3_4:68337737-68337756 Msa0516800:CDS 60.0%
!! GGGAAGCGCTTGTGAGAGAC+AGG - chr3_4:68337964-68337983 Msa0516800:intron 60.0%
!! GGGAAGCGCTTGTGAGAGAC+AGG - chr3_4:68337964-68337983 Msa0516800:intron 60.0%
! CGGTCGGCATTGAGTTCCAC+TGG - chr3_4:68338510-68338529 Msa0516800:CDS 60.0%
ATCGAAGCGGGCGGGTGAAA+CGG + chr3_4:68338612-68338631 None:intergenic 60.0%
CCGCCCGCTTCGATTTACAC+TGG - chr3_4:68338618-68338637 Msa0516800:intron 60.0%
CTGGGCCGGATTGCTCAGTT+TGG - chr3_4:68338637-68338656 Msa0516800:intron 60.0%
! GGAAGGTGCAGCAGGGGAAG+TGG + chr3_4:68335551-68335570 None:intergenic 65.0%
GGGTGGACAAACGGTCGGGT+TGG - chr3_4:68337654-68337673 Msa0516800:intron 65.0%
!! CGGTCGGGTTGGACGGTTTC+GGG - chr3_4:68337665-68337684 Msa0516800:intron 65.0%
!! GCGGGTGAAACGGATTGGGC+GGG + chr3_4:68338602-68338621 None:intergenic 65.0%
!! GGCGGGTGAAACGGATTGGG+CGG + chr3_4:68338603-68338622 None:intergenic 65.0%
! GCGGGCGGGTGAAACGGATT+GGG + chr3_4:68338606-68338625 None:intergenic 65.0%
AGCGGGCGGGTGAAACGGAT+TGG + chr3_4:68338607-68338626 None:intergenic 65.0%
CGAACAGCACGAGCTCGGAC+TGG + chr3_4:68339183-68339202 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68332848 68339648 68332848 ID=Msa0516800;Name=Msa0516800
chr3_4 mRNA 68332848 68339648 68332848 ID=Msa0516800-mRNA-1;Parent=Msa0516800;Name=Msa0516800-mRNA-1;_AED=0.09;_eAED=0.09;_QI=323|1|1|1|0.9|0.81|11|430|388
chr3_4 exon 68332848 68333335 68332848 ID=Msa0516800-mRNA-1:exon:18000;Parent=Msa0516800-mRNA-1
chr3_4 exon 68333423 68333484 68333423 ID=Msa0516800-mRNA-1:exon:17999;Parent=Msa0516800-mRNA-1
chr3_4 exon 68337095 68337163 68337095 ID=Msa0516800-mRNA-1:exon:17998;Parent=Msa0516800-mRNA-1
chr3_4 exon 68337334 68337381 68337334 ID=Msa0516800-mRNA-1:exon:17997;Parent=Msa0516800-mRNA-1
chr3_4 exon 68337504 68337563 68337504 ID=Msa0516800-mRNA-1:exon:17996;Parent=Msa0516800-mRNA-1
chr3_4 exon 68337678 68337790 68337678 ID=Msa0516800-mRNA-1:exon:17995;Parent=Msa0516800-mRNA-1
chr3_4 exon 68337876 68337948 68337876 ID=Msa0516800-mRNA-1:exon:17994;Parent=Msa0516800-mRNA-1
chr3_4 exon 68338338 68338382 68338338 ID=Msa0516800-mRNA-1:exon:17993;Parent=Msa0516800-mRNA-1
chr3_4 exon 68338486 68338596 68338486 ID=Msa0516800-mRNA-1:exon:17992;Parent=Msa0516800-mRNA-1
chr3_4 exon 68338705 68339306 68338705 ID=Msa0516800-mRNA-1:exon:17991;Parent=Msa0516800-mRNA-1
chr3_4 exon 68339400 68339648 68339400 ID=Msa0516800-mRNA-1:exon:17990;Parent=Msa0516800-mRNA-1
chr3_4 five_prime_UTR 68339400 68339648 68339400 ID=Msa0516800-mRNA-1:five_prime_utr;Parent=Msa0516800-mRNA-1
chr3_4 five_prime_UTR 68339233 68339306 68339233 ID=Msa0516800-mRNA-1:five_prime_utr;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68338705 68339232 68338705 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68338486 68338596 68338486 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68338338 68338382 68338338 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68337876 68337948 68337876 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68337678 68337790 68337678 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68337504 68337563 68337504 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68337334 68337381 68337334 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68337095 68337163 68337095 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68333423 68333484 68333423 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 CDS 68333278 68333335 68333278 ID=Msa0516800-mRNA-1:cds;Parent=Msa0516800-mRNA-1
chr3_4 three_prime_UTR 68332848 68333277 68332848 ID=Msa0516800-mRNA-1:three_prime_utr;Parent=Msa0516800-mRNA-1
Gene Sequence

>Msa0516800

ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACAGTGTTGTTTCATCGGACTCAACTGAGGTTGTTGAGAAATCCAAACCCAAAACCGATCAGAATCTGAACACCAGCACCGTTAACACCAACGTTGTTGGTGTGATCAATCATCAACAACAAGACAGTGTTCCAAATGGTAACCATGGTTTCATGGCTCATCAAATGGGTCAGATGCATGGAAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTATGGTGGGAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAGGAGTTGTTGTCAAAACTGAATCCTATGGCTGAGGAATTTGTGCCACCTTCACTGGTTACTAATTATCATGGCTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGAAATGCTAATGCTAATGCTAATGCTAATGCTACTGCTAATAATGGACAGATTAACAGAAGGAGGAAGAATGGCTATAATAATGCGAAGCGAAGAGTGTATCATAAGATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTATGCGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTATCCATTGAGAGTGCTGCCTTCAAAGACTGCTATTGCACCTGTTAATCCAACTTTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACCAGAACAATTTATTGCACAAATCTCGACAAGAAGCTTACTCAAGCAGATGTCAAGCACTTCTTTGAATCTATCTGTGGCGAGGTTCAACGTCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTGGAGTTTGCAGTGGCTGAGAGTGCAATTGCTGCACTGAGCTGTAGTGGTGTGGTTTTGGGTTCACTACCCATAAGGGTAAGTCCATCAAAGACACCAGTCCGAGCTCGTGCTGTTCGTACTCCCATGCACTGA

Protein sequence

>Msa0516800

MAVAENVGTKIDSSSENLDNSVVSSDSTEVVEKSKPKTDQNLNTSTVNTNVVGVINHQQQDSVPNGNHGFMAHQMGQMHGNGVQNQHLVDGYGGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANANANATANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH*