AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0713820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713820 MtrunA17_Chr5g0401071 100.000 184 0 0 1 184 1 184 1.50e-136 379
Msa0713820 MtrunA17_Chr5g0434561 82.967 182 31 0 1 182 1 182 7.04e-114 321
Msa0713820 MtrunA17_Chr4g0012371 90.909 165 15 0 20 184 1 165 9.16e-109 308
Msa0713820 MtrunA17_Chr4g0072861 36.813 182 112 2 1 182 1 179 9.97e-36 123
Msa0713820 MtrunA17_Chr7g0270301 33.152 184 120 2 1 184 1 181 4.54e-31 111
Msa0713820 MtrunA17_Chr2g0287721 32.787 183 110 2 2 178 7 182 1.11e-30 110
Msa0713820 MtrunA17_Chr6g0450081 32.609 184 121 2 1 184 1 181 1.52e-30 110
Msa0713820 MtrunA17_Chr1g0194261 32.065 184 122 2 1 184 1 181 3.06e-30 108
Msa0713820 MtrunA17_Chr5g0413451 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0713820 MtrunA17_Chr5g0413441 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0713820 MtrunA17_Chr5g0401761 33.735 166 109 1 11 176 9 173 9.52e-30 107
Msa0713820 MtrunA17_Chr4g0039591 29.651 172 120 1 5 176 3 173 4.16e-26 99.0
Msa0713820 MtrunA17_Chr8g0373271 33.735 166 106 3 20 183 17 180 4.26e-26 98.6
Msa0713820 MtrunA17_Chr5g0395641 30.387 181 123 2 5 183 3 182 4.82e-25 95.9
Msa0713820 MtrunA17_Chr1g0188111 35.811 148 82 2 14 155 12 152 8.89e-25 95.1
Msa0713820 MtrunA17_Chr5g0395631 29.801 151 105 1 5 155 3 152 3.04e-24 94.0
Msa0713820 MtrunA17_Chr2g0294701 31.443 194 119 3 1 181 1 193 3.86e-23 91.3
Msa0713820 MtrunA17_Chr7g0271761 36.601 153 95 2 1 152 1 152 8.95e-23 90.1
Msa0713820 MtrunA17_Chr4g0068171 31.073 177 109 2 17 181 18 193 1.12e-21 87.4
Msa0713820 MtrunA17_Chr4g0055651 28.994 169 110 5 20 183 9 172 1.33e-12 63.5
Msa0713820 MtrunA17_Chr7g0250531 30.189 159 101 5 20 173 9 162 1.19e-11 60.8
Msa0713820 MtrunA17_Chr2g0276931 28.402 169 111 5 20 183 10 173 2.20e-11 60.1
Msa0713820 MtrunA17_Chr7g0265001 30.675 163 97 8 24 177 21 176 3.54e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0713820 AT3G49870.1 92.935 184 13 0 1 184 1 184 6.45e-127 354
Msa0713820 AT5G67560.1 92.308 182 14 0 1 182 1 182 1.85e-125 351
Msa0713820 AT5G37680.1 80.978 184 35 0 1 184 1 184 6.06e-115 324
Msa0713820 AT3G49870.2 92.727 165 12 0 20 184 1 165 1.85e-112 317
Msa0713820 AT3G49860.1 80.838 167 32 0 18 184 10 176 1.79e-98 282
Msa0713820 AT5G37680.2 78.832 137 29 0 48 184 1 137 6.53e-81 236
Msa0713820 AT2G24765.1 33.708 178 117 1 7 184 5 181 3.41e-33 117
Msa0713820 AT5G52210.1 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0713820 AT5G52210.2 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0713820 AT1G10630.1 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0713820 AT1G10630.2 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0713820 AT2G47170.2 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0713820 AT2G47170.1 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0713820 AT2G47170.3 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0713820 AT1G23490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.2 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.7 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.4 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.3 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.6 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT1G70490.5 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0713820 AT5G14670.2 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0713820 AT5G14670.3 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0713820 AT3G62290.3 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0713820 AT3G62290.1 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0713820 AT3G62290.2 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0713820 AT5G14670.1 32.240 183 121 2 1 183 1 180 1.80e-29 107
Msa0713820 AT3G03120.1 29.070 172 121 1 5 176 3 173 4.60e-26 99.0
Msa0713820 AT5G17060.2 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0713820 AT5G17060.1 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0713820 AT2G24765.2 35.484 124 79 1 7 130 5 127 5.23e-25 94.7
Msa0713820 AT2G15310.1 30.061 163 107 3 17 176 15 173 1.02e-24 95.9
Msa0713820 AT2G18390.1 33.133 166 107 3 20 183 17 180 4.24e-24 94.0
Msa0713820 AT3G22950.1 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0713820 AT3G22950.2 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0713820 AT3G03120.2 32.812 128 85 1 5 132 3 129 1.97e-23 90.5
Msa0713820 AT3G62560.1 36.765 136 85 1 17 152 18 152 1.97e-22 89.7
Msa0713820 AT1G56330.1 31.250 192 118 3 1 179 1 191 2.12e-22 89.7
Msa0713820 AT4G02080.1 36.054 147 92 2 7 152 7 152 4.66e-22 88.6
Msa0713820 AT1G09180.1 31.959 194 118 3 1 181 1 193 1.83e-20 84.3
Msa0713820 AT1G02440.1 25.137 183 118 4 13 181 11 188 3.08e-17 75.9
Msa0713820 AT1G02430.1 24.725 182 118 4 14 181 12 188 2.35e-16 73.6
Msa0713820 AT1G02430.2 26.712 146 102 2 14 154 12 157 1.02e-15 71.2
Msa0713820 AT1G43890.3 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0713820 AT1G43890.1 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0713820 AT1G43890.2 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0713820 AT1G02440.2 25.352 142 71 2 13 154 11 117 5.49e-11 57.8

Find 62 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGGTGGGATTAATTTA+AGG 0.222736 5_1:+6270151 None:intergenic
ATTGAGTGGTATCCCTTTAT+TGG 0.240394 5_1:-6270831 Msa0713820:CDS
CTTGATATGCTAAGGTTATC+TGG 0.245165 5_1:+6270887 None:intergenic
TTGTTTCCCAACACCAATAA+AGG 0.252942 5_1:+6270818 None:intergenic
GAGATGGAGTTATCTCTTAT+AGG 0.305630 5_1:-6274984 Msa0713820:CDS
ACAATAAAGTTATGGGATCT+TGG 0.325152 5_1:-6271873 Msa0713820:CDS
AGTTTCTTAGCTCTTTGATT+TGG 0.349213 5_1:+6270486 None:intergenic
CAATAAAGTTATGGGATCTT+GGG 0.353435 5_1:-6271872 Msa0713820:CDS
AATGATTAGTCTTGTATGAT+TGG 0.354105 5_1:-6270345 Msa0713820:three_prime_UTR
AGATGGAGTTATCTCTTATA+GGG 0.367558 5_1:-6274983 Msa0713820:CDS
CCATCTCCTGCTTGAAGAAA+AGG 0.375686 5_1:+6275000 None:intergenic
GCTGGTCATTTGAAAGAAAC+AGG 0.376587 5_1:+6270183 None:intergenic
TTGTATGATTGGGAATTAAA+CGG 0.384038 5_1:-6270334 Msa0713820:three_prime_UTR
GCAATGTTACAATAAAGTTA+TGG 0.384617 5_1:-6271881 Msa0713820:CDS
TGCATGTCTAACTCTGAGAT+TGG 0.387642 5_1:-6270399 Msa0713820:three_prime_UTR
CAATGTTACAATAAAGTTAT+GGG 0.399340 5_1:-6271880 Msa0713820:CDS
AATTTAAGGCCACACATTGC+TGG 0.404845 5_1:+6270165 None:intergenic
GAGTGCAAAGCGAGGGAAGA+AGG 0.427399 5_1:-6275862 Msa0713820:five_prime_UTR
TGTATGATTGGGAATTAAAC+GGG 0.430307 5_1:-6270333 Msa0713820:three_prime_UTR
GGTATCCCTTTATTGGTGTT+GGG 0.432316 5_1:-6270824 Msa0713820:CDS
TGTTTCCCAACACCAATAAA+GGG 0.437850 5_1:+6270819 None:intergenic
ATGATTAGTCTTGTATGATT+GGG 0.442414 5_1:-6270344 Msa0713820:three_prime_UTR
TTTATCCTTTCCCTTTCCTC+AGG 0.449046 5_1:-6270376 Msa0713820:three_prime_UTR
TGGTATCCCTTTATTGGTGT+TGG 0.453471 5_1:-6270825 Msa0713820:CDS
CTTATAGGGCTTCAGAATGC+TGG 0.462107 5_1:-6274969 Msa0713820:CDS
TTACTAAGCACCTGAGGAAA+GGG 0.471210 5_1:+6270366 None:intergenic
GTTCACTTCTTGATATGCTA+AGG 0.480587 5_1:+6270879 None:intergenic
TGCAGGTGGGATTCAATATG+AGG 0.498889 5_1:-6271917 Msa0713820:intron
CAAAGCGAGGGAAGAAGGAT+AGG 0.507495 5_1:-6275857 Msa0713820:five_prime_UTR
ACGGGATAAAATACATGTCA+AGG 0.525525 5_1:-6270315 Msa0713820:three_prime_UTR
TTACAGCAACAACATTTACA+AGG 0.527139 5_1:+6274937 None:intergenic
ACATCGACTCTGTTATTGAC+TGG 0.533756 5_1:-6270522 Msa0713820:CDS
AATATGAGGAAAGTAACAAA+AGG 0.537108 5_1:-6271903 Msa0713820:CDS
GGAAACAAGATTGACAAGGC+AGG 0.537382 5_1:-6270803 Msa0713820:CDS
ATTACTAAGCACCTGAGGAA+AGG 0.544169 5_1:+6270365 None:intergenic
CTCAATTCTGGATTTAGTAG+TGG 0.544172 5_1:-6270426 Msa0713820:three_prime_UTR
GAAACAAGATTGACAAGGCA+GGG 0.547885 5_1:-6270802 Msa0713820:CDS
CATGTCCTCGCTGTATCCAC+CGG 0.552693 5_1:+6274823 None:intergenic
AAAGGGATACCACTCAATGA+TGG 0.564623 5_1:+6270836 None:intergenic
AACCTAGGTTCCGTAGCATG+TGG 0.564867 5_1:-6271845 Msa0713820:CDS
AATAAAGTTATGGGATCTTG+GGG 0.566711 5_1:-6271871 Msa0713820:CDS
GCGAGGGAAGAAGGATAGGA+AGG 0.567798 5_1:-6275853 Msa0713820:five_prime_UTR
CGGGATAAAATACATGTCAA+GGG 0.576180 5_1:-6270314 Msa0713820:three_prime_UTR
GTCAATAACAGAGTCGATGT+TGG 0.577317 5_1:+6270525 None:intergenic
AGTAACGTTCCCACATGCTA+CGG 0.585403 5_1:+6271835 None:intergenic
TTCAAATGACCAGCAATGTG+TGG 0.602029 5_1:-6270174 Msa0713820:three_prime_UTR
TACAGCAACAACATTTACAA+GGG 0.602506 5_1:+6274938 None:intergenic
CTGAGCAAGCCATCATTGAG+TGG 0.608208 5_1:-6270845 Msa0713820:CDS
TAAAGTTATGGGATCTTGGG+GGG 0.613674 5_1:-6271869 Msa0713820:CDS
GTTTGTTTCATACACAATAG+CGG 0.619252 5_1:+6271800 None:intergenic
ACCTAGGTTCCGTAGCATGT+GGG 0.619889 5_1:-6271844 Msa0713820:CDS
CGATAATAGAGTGCAAAGCG+AGG 0.626433 5_1:-6275870 Msa0713820:five_prime_UTR
AAACAAGATTGACAAGGCAG+GGG 0.626437 5_1:-6270801 Msa0713820:CDS
ACGCGTATCTTACATTTGGT+CGG 0.630887 5_1:+6270757 None:intergenic
AAGCACCTGAGGAAAGGGAA+AGG 0.631811 5_1:+6270371 None:intergenic
TCCCACATGCTACGGAACCT+AGG 0.638908 5_1:+6271843 None:intergenic
GTGGGAACGTTACTGTCGTG+CGG 0.647989 5_1:-6271826 Msa0713820:CDS
GATAATAGAGTGCAAAGCGA+GGG 0.655867 5_1:-6275869 Msa0713820:five_prime_UTR
ATAAAGTTATGGGATCTTGG+GGG 0.665703 5_1:-6271870 Msa0713820:CDS
TAATCATTACTAAGCACCTG+AGG 0.669322 5_1:+6270360 None:intergenic
GTTGGGAAACAAGATTGACA+AGG 0.714570 5_1:-6270807 Msa0713820:CDS
TTAGACCGGTGGATACAGCG+AGG 0.780785 5_1:-6274828 Msa0713820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTATTGTGTATTAT+CGG - chr5_1:6275775-6275794 Msa0713820:five_prime_UTR 10.0%
!!! TTGTTTATTTTTTGTTGAAT+AGG - chr5_1:6270431-6270450 Msa0713820:three_prime_UTR 15.0%
!!! TCAATTTGTTTGTAATAATT+TGG - chr5_1:6270474-6270493 Msa0713820:exon 15.0%
!!! CTAATTTTTATTATTCACTT+GGG - chr5_1:6274042-6274061 Msa0713820:intron 15.0%
!!! TTGTTTATTTTAGTTTTTGT+TGG - chr5_1:6274535-6274554 Msa0713820:intron 15.0%
!!! TGTTTATTTTAGTTTTTGTT+GGG - chr5_1:6274536-6274555 Msa0713820:intron 15.0%
!! AAAAAAGAATACAAAATTGA+AGG + chr5_1:6275414-6275433 None:intergenic 15.0%
!!! TTTAGTTTGAGAAAAAACAA+TGG - chr5_1:6270349-6270368 Msa0713820:three_prime_UTR 20.0%
!!! TTAGTTTGAGAAAAAACAAT+GGG - chr5_1:6270350-6270369 Msa0713820:three_prime_UTR 20.0%
!! TGATTTACAAATCATATCAA+AGG + chr5_1:6270523-6270542 None:intergenic 20.0%
!!! GATATGATTTGTAAATCAAT+TGG - chr5_1:6270525-6270544 Msa0713820:CDS 20.0%
!!! AAAATGATTTTTATCCCTAA+GGG + chr5_1:6270841-6270860 None:intergenic 20.0%
!!! AAAAATGATTTTTATCCCTA+AGG + chr5_1:6270842-6270861 None:intergenic 20.0%
!!! TATTTATATTGCTTTTAGAC+CGG - chr5_1:6271214-6271233 Msa0713820:intron 20.0%
!!! TAGAAAAAAGTTTGTTATTG+TGG - chr5_1:6271444-6271463 Msa0713820:intron 20.0%
!! TAATAAGCTATACGATAAAT+AGG - chr5_1:6271525-6271544 Msa0713820:intron 20.0%
!! TCAGTTATAACAATAGAAAT+AGG + chr5_1:6272711-6272730 None:intergenic 20.0%
!! ATTTCTATTGTTATAACTGA+CGG - chr5_1:6272711-6272730 Msa0713820:intron 20.0%
!!! TTTGAAATTTTTTCCTTACT+TGG - chr5_1:6272882-6272901 Msa0713820:intron 20.0%
!!! TTGAAATTTTTTCCTTACTT+GGG - chr5_1:6272883-6272902 Msa0713820:intron 20.0%
!! TTCAATTATTTGATACAGAT+GGG - chr5_1:6273572-6273591 Msa0713820:intron 20.0%
!! TAGTTAATTGTTATCAATCA+TGG + chr5_1:6273771-6273790 None:intergenic 20.0%
!!! TTTCCTGTATTTTTTTTAAC+GGG + chr5_1:6273914-6273933 None:intergenic 20.0%
!!! CTTTCCTGTATTTTTTTTAA+CGG + chr5_1:6273915-6273934 None:intergenic 20.0%
!! CCAAGTGAATAATAAAAATT+AGG + chr5_1:6274044-6274063 None:intergenic 20.0%
!!! CCTAATTTTTATTATTCACT+TGG - chr5_1:6274041-6274060 Msa0713820:intron 20.0%
!! CAATGTTACAATAAAGTTAT+GGG - chr5_1:6274176-6274195 Msa0713820:intron 20.0%
!! AAGAATAATATTAAGGCTTT+AGG + chr5_1:6274497-6274516 None:intergenic 20.0%
!! AATCAGCAAGAATAATATTA+AGG + chr5_1:6274504-6274523 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTTGTTG+GGG - chr5_1:6274537-6274556 Msa0713820:intron 20.0%
!! TAAATAAACAAGGTAAAATC+TGG + chr5_1:6274574-6274593 None:intergenic 20.0%
!! AAAAAGAATAACTCAACAAT+TGG + chr5_1:6274600-6274619 None:intergenic 20.0%
!!! ATTTTATTCATTAACTTCCT+AGG + chr5_1:6275369-6275388 None:intergenic 20.0%
!!! TGTATTCTTTTTTATCTGTT+TGG - chr5_1:6275421-6275440 Msa0713820:intron 20.0%
!!! ATTTTTTGTTGAATAGGTTC+TGG - chr5_1:6270437-6270456 Msa0713820:three_prime_UTR 25.0%
! AACCATTTCTATAATCAAAG+AGG - chr5_1:6270667-6270686 Msa0713820:intron 25.0%
! ACCATTTCTATAATCAAAGA+GGG - chr5_1:6270668-6270687 Msa0713820:intron 25.0%
! AATTAAGTGCTATGTGAAAA+GGG + chr5_1:6270905-6270924 None:intergenic 25.0%
! AAATTAAGTGCTATGTGAAA+AGG + chr5_1:6270906-6270925 None:intergenic 25.0%
!! TAGCACTTAATTTCAGTTTT+AGG - chr5_1:6270913-6270932 Msa0713820:intron 25.0%
! CTAACACAAACAAATAGAAT+AGG + chr5_1:6271306-6271325 None:intergenic 25.0%
! ATGATTAGAAGGATTCATTA+GGG - chr5_1:6271482-6271501 Msa0713820:intron 25.0%
! TATACGATAAATAGGAATCA+GGG - chr5_1:6271533-6271552 Msa0713820:intron 25.0%
! GAGTAATAAAAATTGGATGA+AGG + chr5_1:6271694-6271713 None:intergenic 25.0%
! CACATTAGAAGGAAAAAATT+GGG - chr5_1:6271917-6271936 Msa0713820:intron 25.0%
! TGGTAGATTGACTATTAAAT+AGG - chr5_1:6272113-6272132 Msa0713820:intron 25.0%
! GGTAGATTGACTATTAAATA+GGG - chr5_1:6272114-6272133 Msa0713820:intron 25.0%
! AAACTGATGTGTTCAAAAAT+GGG + chr5_1:6272353-6272372 None:intergenic 25.0%
! TAAACTGATGTGTTCAAAAA+TGG + chr5_1:6272354-6272373 None:intergenic 25.0%
!! TTTTGAACACATCAGTTTAT+AGG - chr5_1:6272355-6272374 Msa0713820:intron 25.0%
! ATATCTTTGCAAATAGCTTT+AGG + chr5_1:6272519-6272538 None:intergenic 25.0%
! TATTTGCAAAGATATCAGTT+TGG - chr5_1:6272524-6272543 Msa0713820:intron 25.0%
!! CTGTATAATACCAATTTTCA+CGG - chr5_1:6272914-6272933 Msa0713820:intron 25.0%
!! TGTATAATACCAATTTTCAC+GGG - chr5_1:6272915-6272934 Msa0713820:intron 25.0%
! ACATCAACTTAAACATCATT+TGG - chr5_1:6273033-6273052 Msa0713820:intron 25.0%
! TAACATCATGCTACATATTT+GGG + chr5_1:6273177-6273196 None:intergenic 25.0%
! ATAACATCATGCTACATATT+TGG + chr5_1:6273178-6273197 None:intergenic 25.0%
! AAATATGTAGCATGATGTTA+TGG - chr5_1:6273177-6273196 Msa0713820:intron 25.0%
! AATATGTAGCATGATGTTAT+GGG - chr5_1:6273178-6273197 Msa0713820:intron 25.0%
!! ATTTGTTTGATAACCTGATA+AGG + chr5_1:6273204-6273223 None:intergenic 25.0%
! TATCAGGTTATCAAACAAAT+AGG - chr5_1:6273204-6273223 Msa0713820:intron 25.0%
! CAGATAAAATACATGCAATA+AGG + chr5_1:6273275-6273294 None:intergenic 25.0%
!! TATTGCATGTATTTTATCTG+AGG - chr5_1:6273275-6273294 Msa0713820:intron 25.0%
! GTTCAATTATTTGATACAGA+TGG - chr5_1:6273571-6273590 Msa0713820:intron 25.0%
! TTGTTCCACAATATGATATT+TGG - chr5_1:6273675-6273694 Msa0713820:intron 25.0%
! TAGTACCAAATATCATATTG+TGG + chr5_1:6273683-6273702 None:intergenic 25.0%
! TTGGTACTATTGTCAAATAA+TGG - chr5_1:6273694-6273713 Msa0713820:intron 25.0%
! TGGTACTATTGTCAAATAAT+GGG - chr5_1:6273695-6273714 Msa0713820:intron 25.0%
! AGGATCAGTTTGATTAATTA+AGG - chr5_1:6273817-6273836 Msa0713820:intron 25.0%
! AAGTCAATATGTACTTCAAA+GGG + chr5_1:6273966-6273985 None:intergenic 25.0%
! AAAGTCAATATGTACTTCAA+AGG + chr5_1:6273967-6273986 None:intergenic 25.0%
! AATATGAGGAAAGTAACAAA+AGG - chr5_1:6274153-6274172 Msa0713820:intron 25.0%
! GCAATGTTACAATAAAGTTA+TGG - chr5_1:6274175-6274194 Msa0713820:intron 25.0%
! CAATTGGTTGTAAATAAACA+AGG + chr5_1:6274584-6274603 None:intergenic 25.0%
! TTTCAACATATAAAAACACC+AGG + chr5_1:6274693-6274712 None:intergenic 25.0%
!! CTCAATTTTCAACAGAAAAA+AGG + chr5_1:6274969-6274988 None:intergenic 25.0%
! ACAAATACAATAGATCTAAG+AGG + chr5_1:6275012-6275031 None:intergenic 25.0%
!! GATCTATTGTATTTGTCTTT+TGG - chr5_1:6275016-6275035 Msa0713820:intron 25.0%
! AAAGAATACAAAATTGAAGG+AGG + chr5_1:6275411-6275430 None:intergenic 25.0%
!! TGAACTTTGATGTAATTTTG+TGG - chr5_1:6275604-6275623 Msa0713820:intron 25.0%
!! GAACTTTGATGTAATTTTGT+GGG - chr5_1:6275605-6275624 Msa0713820:intron 25.0%
!! AACTTTGATGTAATTTTGTG+GGG - chr5_1:6275606-6275625 Msa0713820:intron 25.0%
!!! AATGATTAGTCTTGTATGAT+TGG - chr5_1:6275711-6275730 Msa0713820:five_prime_UTR 25.0%
!!! ATGATTAGTCTTGTATGATT+GGG - chr5_1:6275712-6275731 Msa0713820:five_prime_UTR 25.0%
! TTGTATGATTGGGAATTAAA+CGG - chr5_1:6275722-6275741 Msa0713820:five_prime_UTR 25.0%
AGAAAAAACAATGGGATTGT+GGG - chr5_1:6270358-6270377 Msa0713820:three_prime_UTR 30.0%
CACTGCTAATATCAAAGTTT+CGG + chr5_1:6270567-6270586 None:intergenic 30.0%
TTGGGTAATCAGCTTAATTA+AGG - chr5_1:6270606-6270625 Msa0713820:intron 30.0%
TGGGTAATCAGCTTAATTAA+GGG - chr5_1:6270607-6270626 Msa0713820:intron 30.0%
TCCCTCTTTGATTATAGAAA+TGG + chr5_1:6270672-6270691 None:intergenic 30.0%
AAGCAGATTAATGCAATCAA+AGG + chr5_1:6270881-6270900 None:intergenic 30.0%
!!! TTTCAGTTTTAGGTTGTCTT+TGG - chr5_1:6270923-6270942 Msa0713820:intron 30.0%
TCAAAATGCATGAGCTTATT+AGG - chr5_1:6271010-6271029 Msa0713820:intron 30.0%
AGATGGAGTTATCTCTTATA+GGG - chr5_1:6271073-6271092 Msa0713820:intron 30.0%
TACAGCAACAACATTTACAA+GGG + chr5_1:6271121-6271140 None:intergenic 30.0%
TTACAGCAACAACATTTACA+AGG + chr5_1:6271122-6271141 None:intergenic 30.0%
! TTTGTTTGTGTTAGTCTGTT+AGG - chr5_1:6271312-6271331 Msa0713820:intron 30.0%
! TTGTTTGTGTTAGTCTGTTA+GGG - chr5_1:6271313-6271332 Msa0713820:intron 30.0%
CAGATAGTTAATACATACGT+GGG - chr5_1:6271415-6271434 Msa0713820:intron 30.0%
GATGATTAGAAGGATTCATT+AGG - chr5_1:6271481-6271500 Msa0713820:intron 30.0%
CTATACGATAAATAGGAATC+AGG - chr5_1:6271532-6271551 Msa0713820:intron 30.0%
CTCTTCAATGAATAATGCAA+AGG - chr5_1:6271647-6271666 Msa0713820:intron 30.0%
! TCCAATTTTTATTACTCCCT+CGG - chr5_1:6271697-6271716 Msa0713820:intron 30.0%
GCACATTAGAAGGAAAAAAT+TGG - chr5_1:6271916-6271935 Msa0713820:intron 30.0%
!!! TAGGTTTTGGCTAAAAAAAG+TGG - chr5_1:6272069-6272088 Msa0713820:intron 30.0%
TTGACTATTAAATAGGGAAG+AGG - chr5_1:6272120-6272139 Msa0713820:intron 30.0%
ATTAAATAGGGAAGAGGTTA+AGG - chr5_1:6272126-6272145 Msa0713820:intron 30.0%
TTATATCCAGTATCACTGAT+TGG - chr5_1:6272171-6272190 Msa0713820:intron 30.0%
! TATAGCGGAAATGAGAATTA+GGG + chr5_1:6272258-6272277 None:intergenic 30.0%
TGTGTTCAAAAATGGGATTT+GGG + chr5_1:6272346-6272365 None:intergenic 30.0%
ATGTGTTCAAAAATGGGATT+TGG + chr5_1:6272347-6272366 None:intergenic 30.0%
CAGTTTATAGGAACTACAAA+TGG - chr5_1:6272367-6272386 Msa0713820:intron 30.0%
TTATAGGAACTACAAATGGT+TGG - chr5_1:6272371-6272390 Msa0713820:intron 30.0%
!! TTGCAAATAGCTTTAGGAAT+AGG + chr5_1:6272513-6272532 None:intergenic 30.0%
TATCAGTTTGGACTTCATTA+AGG - chr5_1:6272536-6272555 Msa0713820:intron 30.0%
TGCATTAAAATGCTCCTATT+TGG - chr5_1:6272633-6272652 Msa0713820:intron 30.0%
! TTTTTGCGTGAGAATTAGTT+AGG - chr5_1:6272674-6272693 Msa0713820:intron 30.0%
TGAGAATTAGTTAGGTTACT+TGG - chr5_1:6272682-6272701 Msa0713820:intron 30.0%
GAGAATTAGTTAGGTTACTT+GGG - chr5_1:6272683-6272702 Msa0713820:intron 30.0%
! GAGAGATTTTCAATACATAC+AGG - chr5_1:6272770-6272789 Msa0713820:intron 30.0%
GACTTGATATACAGAAATGA+AGG - chr5_1:6273007-6273026 Msa0713820:intron 30.0%
AACTTAAACATCATTTGGCA+GGG - chr5_1:6273038-6273057 Msa0713820:intron 30.0%
ATTGTCCATTGTGTATACAA+GGG - chr5_1:6273125-6273144 Msa0713820:intron 30.0%
AACATCATGCTACATATTTG+GGG + chr5_1:6273176-6273195 None:intergenic 30.0%
AGATTTGTCAGTATAGATGA+TGG - chr5_1:6273383-6273402 Msa0713820:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_1:6273408-6273427 Msa0713820:intron 30.0%
! GATTATAATAGACCAGGTTT+TGG - chr5_1:6273414-6273433 Msa0713820:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_1:6273408-6273427 Msa0713820:intron 30.0%
GATTATAATAGACCAGGTTT+CGG - chr5_1:6273414-6273433 Msa0713820:intron 30.0%
AATTATTTGATACAGATGGG+AGG - chr5_1:6273575-6273594 Msa0713820:intron 30.0%
GGTAGTTCAGTGTTAAATAA+CGG - chr5_1:6273601-6273620 Msa0713820:intron 30.0%
TCAGTGTTAAATAACGGTTA+TGG - chr5_1:6273607-6273626 Msa0713820:intron 30.0%
!!! CAGTTTTTTTAGCAGTTAGA+AGG - chr5_1:6273797-6273816 Msa0713820:intron 30.0%
AAGATGGTACTGTATAGATT+AGG - chr5_1:6273857-6273876 Msa0713820:intron 30.0%
GTATAGATTAGGATCTAAGT+AGG - chr5_1:6273868-6273887 Msa0713820:intron 30.0%
GATCCCGTTAAAAAAAATAC+AGG - chr5_1:6273908-6273927 Msa0713820:intron 30.0%
! ATGAAGTTTTCTATCTCTCA+AGG - chr5_1:6274083-6274102 Msa0713820:intron 30.0%
! TGAAGTTTTCTATCTCTCAA+GGG - chr5_1:6274084-6274103 Msa0713820:intron 30.0%
ACAATAAAGTTATGGGATCT+TGG - chr5_1:6274183-6274202 Msa0713820:intron 30.0%
CAATAAAGTTATGGGATCTT+GGG - chr5_1:6274184-6274203 Msa0713820:intron 30.0%
AATAAAGTTATGGGATCTTG+GGG - chr5_1:6274185-6274204 Msa0713820:intron 30.0%
GTTTGTTTCATACACAATAG+CGG + chr5_1:6274259-6274278 None:intergenic 30.0%
GAAACAAACTTCTTATCTTC+TGG - chr5_1:6274270-6274289 Msa0713820:intron 30.0%
TAGTTGAGCATAACTATGTT+CGG + chr5_1:6274634-6274653 None:intergenic 30.0%
!!! TGCTCAACTACTGATTTTTT+AGG - chr5_1:6274644-6274663 Msa0713820:intron 30.0%
ACATATAAAAACACCAGGAA+AGG + chr5_1:6274688-6274707 None:intergenic 30.0%
!!! TTCTCTACGCTTTTTCATAT+AGG + chr5_1:6274725-6274744 None:intergenic 30.0%
!! TTAACGAAATCGATTTGTAC+AGG + chr5_1:6274753-6274772 None:intergenic 30.0%
CTTGATTATCTCACAAAATG+TGG - chr5_1:6274843-6274862 Msa0713820:intron 30.0%
! CAATTCTGAAAAGTCTTGAT+TGG - chr5_1:6274916-6274935 Msa0713820:intron 30.0%
TTATCTGAATTCGTGAAACT+TGG - chr5_1:6275095-6275114 Msa0713820:intron 30.0%
TCTTAACAGCCAGAATAAAA+GGG + chr5_1:6275325-6275344 None:intergenic 30.0%
! AGTTTCTTAGCTCTTTGATT+TGG + chr5_1:6275573-6275592 None:intergenic 30.0%
TGTATGATTGGGAATTAAAC+GGG - chr5_1:6275723-6275742 Msa0713820:five_prime_UTR 30.0%
GAGAAAAAACAATGGGATTG+TGG - chr5_1:6270357-6270376 Msa0713820:three_prime_UTR 35.0%
CAGCTTAATTAAGGGCTTAT+TGG - chr5_1:6270615-6270634 Msa0713820:intron 35.0%
CTATAATCAAAGAGGGAATG+CGG - chr5_1:6270675-6270694 Msa0713820:intron 35.0%
CGGTCAAACTGTATTTATGT+AGG - chr5_1:6270695-6270714 Msa0713820:intron 35.0%
GAGATGGAGTTATCTCTTAT+AGG - chr5_1:6271072-6271091 Msa0713820:intron 35.0%
!! TTATATTGCTTTTAGACCGG+TGG - chr5_1:6271217-6271236 Msa0713820:intron 35.0%
! TCTGTTAGGGTATTAGCAAA+TGG - chr5_1:6271326-6271345 Msa0713820:intron 35.0%
! CTGTTAGGGTATTAGCAAAT+GGG - chr5_1:6271327-6271346 Msa0713820:intron 35.0%
! TGTTAGGGTATTAGCAAATG+GGG - chr5_1:6271328-6271347 Msa0713820:intron 35.0%
TATACGAGAAGTAAGAGTAG+TGG - chr5_1:6271383-6271402 Msa0713820:intron 35.0%
CCACGTATGTATTAACTATC+TGG + chr5_1:6271417-6271436 None:intergenic 35.0%
CCAGATAGTTAATACATACG+TGG - chr5_1:6271414-6271433 Msa0713820:intron 35.0%
!! AGTTTGTTATTGTGGTAGTC+AGG - chr5_1:6271452-6271471 Msa0713820:intron 35.0%
TGATGCTAATATTCTACCGT+TGG + chr5_1:6271885-6271904 None:intergenic 35.0%
TATTAGCATCAAGCAGCTTA+TGG - chr5_1:6271894-6271913 Msa0713820:CDS 35.0%
TTAGAAGGAAAAAATTGGGC+TGG - chr5_1:6271921-6271940 Msa0713820:intron 35.0%
CTGGATATAAGATCAAGAGA+TGG + chr5_1:6272161-6272180 None:intergenic 35.0%
! GTATAGCGGAAATGAGAATT+AGG + chr5_1:6272259-6272278 None:intergenic 35.0%
GCTAGCACAGTAATTAGTAA+TGG + chr5_1:6272430-6272449 None:intergenic 35.0%
! ACTTAATGCACTGACAAGTA+TGG + chr5_1:6272455-6272474 None:intergenic 35.0%
!! ATAGCTTTAGGAATAGGAAG+AGG + chr5_1:6272507-6272526 None:intergenic 35.0%
CAACTTAAACATCATTTGGC+AGG - chr5_1:6273037-6273056 Msa0713820:intron 35.0%
CTTGTATACACAATGGACAA+TGG + chr5_1:6273126-6273145 None:intergenic 35.0%
CATTGTCCATTGTGTATACA+AGG - chr5_1:6273124-6273143 Msa0713820:intron 35.0%
! GCATGTATTTTATCTGAGGA+AGG - chr5_1:6273279-6273298 Msa0713820:intron 35.0%
! ATTTTATCTGAGGAAGGTCT+TGG - chr5_1:6273285-6273304 Msa0713820:intron 35.0%
! TTTTATCTGAGGAAGGTCTT+GGG - chr5_1:6273286-6273305 Msa0713820:intron 35.0%
TGTTATCTACTGACATCAAG+AGG - chr5_1:6273329-6273348 Msa0713820:intron 35.0%
! TTTCGGTGTAGATATTCTAC+AGG - chr5_1:6273462-6273481 Msa0713820:intron 35.0%
! TTCGGTGTAGATATTCTACA+GGG - chr5_1:6273463-6273482 Msa0713820:intron 35.0%
!! TTTTGAAGGTGCATACAAGA+AGG - chr5_1:6273530-6273549 Msa0713820:intron 35.0%
GTGTTAAATAACGGTTATGG+CGG - chr5_1:6273610-6273629 Msa0713820:intron 35.0%
GCTATAGCAATGTATCATAG+CGG - chr5_1:6273634-6273653 Msa0713820:intron 35.0%
ACAAAGTCATAGTTGCAAGA+TGG - chr5_1:6273841-6273860 Msa0713820:intron 35.0%
! AGTAGTTCTGCTGTGTAATA+AGG - chr5_1:6273933-6273952 Msa0713820:intron 35.0%
ATCTGTTCTTATCTGATTGC+AGG - chr5_1:6274122-6274141 Msa0713820:intron 35.0%
ATAAAGTTATGGGATCTTGG+GGG - chr5_1:6274186-6274205 Msa0713820:intron 35.0%
! AAGGTAAAATCTGGTAGTGA+TGG + chr5_1:6274565-6274584 None:intergenic 35.0%
AGTTGAGCATAACTATGTTC+GGG + chr5_1:6274633-6274652 None:intergenic 35.0%
! CAAGACTTTTCAGAATTGAG+CGG + chr5_1:6274914-6274933 None:intergenic 35.0%
CTTGATATGCTAAGGTTATC+TGG + chr5_1:6275172-6275191 None:intergenic 35.0%
GTTCACTTCTTGATATGCTA+AGG + chr5_1:6275180-6275199 None:intergenic 35.0%
ATTGAGTGGTATCCCTTTAT+TGG - chr5_1:6275225-6275244 Msa0713820:intron 35.0%
TGTTTCCCAACACCAATAAA+GGG + chr5_1:6275240-6275259 None:intergenic 35.0%
TTGTTTCCCAACACCAATAA+AGG + chr5_1:6275241-6275260 None:intergenic 35.0%
CTCTTAACAGCCAGAATAAA+AGG + chr5_1:6275326-6275345 None:intergenic 35.0%
!! AGAGCAATAACGGATTAAAG+TGG - chr5_1:6275342-6275361 Msa0713820:intron 35.0%
CTCAATTCTGGATTTAGTAG+TGG - chr5_1:6275630-6275649 Msa0713820:intron 35.0%
TAATCATTACTAAGCACCTG+AGG + chr5_1:6275699-6275718 None:intergenic 35.0%
ACGGGATAAAATACATGTCA+AGG - chr5_1:6275741-6275760 Msa0713820:five_prime_UTR 35.0%
CGGGATAAAATACATGTCAA+GGG - chr5_1:6275742-6275761 Msa0713820:five_prime_UTR 35.0%
! CACAGAATTTCTTTTGTGAG+AGG - chr5_1:6275820-6275839 Msa0713820:five_prime_UTR 35.0%
! TCTTTTGTGAGAGGAATTGA+TGG - chr5_1:6275829-6275848 Msa0713820:five_prime_UTR 35.0%
GATAATAGAGTGCAAAGCGA+GGG - chr5_1:6270187-6270206 Msa0713820:three_prime_UTR 40.0%
!! ATTAGCAGTGTCGACGTATT+AGG - chr5_1:6270577-6270596 Msa0713820:CDS 40.0%
!! TTAGCAGTGTCGACGTATTA+GGG - chr5_1:6270578-6270597 Msa0713820:CDS 40.0%
GCACTTGGAAGAGCTTATTT+AGG + chr5_1:6270817-6270836 None:intergenic 40.0%
AAAGTGATCCACTTAGCACA+GGG + chr5_1:6270988-6271007 None:intergenic 40.0%
CGTGAAGCATAACTTACTGT+AGG + chr5_1:6271262-6271281 None:intergenic 40.0%
! GAGAAGTAAGAGTAGTGGAA+AGG - chr5_1:6271388-6271407 Msa0713820:intron 40.0%
TATTGTGGTAGTCAGGACTT+AGG - chr5_1:6271459-6271478 Msa0713820:intron 40.0%
CAGGACTTAGGATGATTAGA+AGG - chr5_1:6271471-6271490 Msa0713820:intron 40.0%
ACGATAAATAGGAATCAGGG+AGG - chr5_1:6271536-6271555 Msa0713820:intron 40.0%
AGTTCAAGACAACCAACTGA+GGG + chr5_1:6271624-6271643 None:intergenic 40.0%
AAGTTCAAGACAACCAACTG+AGG + chr5_1:6271625-6271644 None:intergenic 40.0%
GCCGAGGGAGTAATAAAAAT+TGG + chr5_1:6271701-6271720 None:intergenic 40.0%
TGATGCACTTGAACCATCAA+TGG - chr5_1:6271782-6271801 Msa0713820:intron 40.0%
! ACACTGACTACTTCCATTGA+TGG + chr5_1:6271798-6271817 None:intergenic 40.0%
CATAACACCGGATTAACACT+TGG - chr5_1:6271836-6271855 Msa0713820:CDS 40.0%
AAGTCTGCCAAGTGTTAATC+CGG + chr5_1:6271846-6271865 None:intergenic 40.0%
! AACACTTGGCAGACTTTTGA+TGG - chr5_1:6271850-6271869 Msa0713820:CDS 40.0%
TTGATGGAGTATACGACCAA+CGG - chr5_1:6271866-6271885 Msa0713820:CDS 40.0%
!!! GGAAAAAATTGGGCTGGTTT+TGG - chr5_1:6271927-6271946 Msa0713820:intron 40.0%
GAAACCATCGACAACTCTTA+AGG - chr5_1:6271961-6271980 Msa0713820:intron 40.0%
TCAATCTACCACCTTGTTAG+AGG + chr5_1:6272104-6272123 None:intergenic 40.0%
AGTCAACCAATCAGTGATAC+TGG + chr5_1:6272180-6272199 None:intergenic 40.0%
! TATCACTGATTGGTTGACTG+AGG - chr5_1:6272181-6272200 Msa0713820:intron 40.0%
CAAGACCTTGAGAAAAACTC+TGG - chr5_1:6272216-6272235 Msa0713820:intron 40.0%
! GTCATCCAGAGTTTTTCTCA+AGG + chr5_1:6272224-6272243 None:intergenic 40.0%
AATGAGAATTAGGGTCCTTC+TGG + chr5_1:6272249-6272268 None:intergenic 40.0%
TTTCCGCTATACTAATGAGC+AGG - chr5_1:6272267-6272286 Msa0713820:intron 40.0%
TTCCGCTATACTAATGAGCA+GGG - chr5_1:6272268-6272287 Msa0713820:intron 40.0%
CTACAAATGGTTGGCACATT+TGG - chr5_1:6272380-6272399 Msa0713820:intron 40.0%
GGACTTCATTAAGGTTGTTG+AGG - chr5_1:6272545-6272564 Msa0713820:intron 40.0%
CCAGTATGGTATCATATCGT+TGG + chr5_1:6272572-6272591 None:intergenic 40.0%
CCAACGATATGATACCATAC+TGG - chr5_1:6272569-6272588 Msa0713820:intron 40.0%
ACGATATGATACCATACTGG+TGG - chr5_1:6272572-6272591 Msa0713820:intron 40.0%
CTCCTATTTGGAAAGAGTTG+TGG - chr5_1:6272645-6272664 Msa0713820:intron 40.0%
TGCCACAACTCTTTCCAAAT+AGG + chr5_1:6272650-6272669 None:intergenic 40.0%
TCATGAGCATGAGCAAATTC+TGG - chr5_1:6272744-6272763 Msa0713820:intron 40.0%
AGGACTGTTGAATCAGACAT+TGG - chr5_1:6272820-6272839 Msa0713820:intron 40.0%
ATTTCACTTCAGAGCAGCAA+AGG - chr5_1:6272858-6272877 Msa0713820:intron 40.0%
TTTCACTTCAGAGCAGCAAA+GGG - chr5_1:6272859-6272878 Msa0713820:intron 40.0%
ACCATTCAAGGTGGTTTATG+TGG - chr5_1:6272952-6272971 Msa0713820:intron 40.0%
ACCACATAAACCACCTTGAA+TGG + chr5_1:6272956-6272975 None:intergenic 40.0%
CCTATCCCTTGTATACACAA+TGG + chr5_1:6273133-6273152 None:intergenic 40.0%
CCATTGTGTATACAAGGGAT+AGG - chr5_1:6273130-6273149 Msa0713820:intron 40.0%
! ATGATGTTATGGGCCTTATC+AGG - chr5_1:6273188-6273207 Msa0713820:intron 40.0%
TTTATCTGAGGAAGGTCTTG+GGG - chr5_1:6273287-6273306 Msa0713820:intron 40.0%
AATCAGATCAGACCAAAACC+TGG + chr5_1:6273429-6273448 None:intergenic 40.0%
AGAATATCTACACCGAAACC+TGG + chr5_1:6273460-6273479 None:intergenic 40.0%
ACAGGGTTAATGTTAGTGAC+AGG - chr5_1:6273480-6273499 Msa0713820:intron 40.0%
TTAATGTTAGTGACAGGCAG+TGG - chr5_1:6273486-6273505 Msa0713820:intron 40.0%
TTTGATACAGATGGGAGGAA+CGG - chr5_1:6273580-6273599 Msa0713820:intron 40.0%
! CAATCATGGACTGCAGAAAA+TGG + chr5_1:6273757-6273776 None:intergenic 40.0%
GTAGGATTCGAGAACAGAAA+CGG - chr5_1:6273886-6273905 Msa0713820:intron 40.0%
TGTTCTTATCTGATTGCAGG+TGG - chr5_1:6274125-6274144 Msa0713820:intron 40.0%
GTTCTTATCTGATTGCAGGT+GGG - chr5_1:6274126-6274145 Msa0713820:intron 40.0%
TAAAGTTATGGGATCTTGGG+GGG - chr5_1:6274187-6274206 Msa0713820:intron 40.0%
TGTGTGTGTGTGTTTCACAT+AGG - chr5_1:6274320-6274339 Msa0713820:intron 40.0%
! TGTGTTTCACATAGGAGCAT+TGG - chr5_1:6274328-6274347 Msa0713820:intron 40.0%
ACAAAGACAACGCTCAAAGA+AGG + chr5_1:6274778-6274797 None:intergenic 40.0%
! TCTTTGAGCGTTGTCTTTGT+CGG - chr5_1:6274778-6274797 Msa0713820:intron 40.0%
TGAAAATTGAGATGCTGCCA+AGG - chr5_1:6274978-6274997 Msa0713820:CDS 40.0%
AAAGGGATACCACTCAATGA+TGG + chr5_1:6275223-6275242 None:intergenic 40.0%
TGGTATCCCTTTATTGGTGT+TGG - chr5_1:6275231-6275250 Msa0713820:intron 40.0%
! GGTATCCCTTTATTGGTGTT+GGG - chr5_1:6275232-6275251 Msa0713820:intron 40.0%
GTTGGGAAACAAGATTGACA+AGG - chr5_1:6275249-6275268 Msa0713820:intron 40.0%
GAAACAAGATTGACAAGGCA+GGG - chr5_1:6275254-6275273 Msa0713820:intron 40.0%
AAACAAGATTGACAAGGCAG+GGG - chr5_1:6275255-6275274 Msa0713820:intron 40.0%
ACGCGTATCTTACATTTGGT+CGG + chr5_1:6275302-6275321 None:intergenic 40.0%
CTGGCTGTTAAGAGCAATAA+CGG - chr5_1:6275332-6275351 Msa0713820:intron 40.0%
!! TAACGGATTAAAGTGGTCCT+AGG - chr5_1:6275349-6275368 Msa0713820:intron 40.0%
GTCAATAACAGAGTCGATGT+TGG + chr5_1:6275534-6275553 None:intergenic 40.0%
!! ACATCGACTCTGTTATTGAC+TGG - chr5_1:6275534-6275553 Msa0713820:intron 40.0%
! ATTTTGTGGGGACTCAATTC+TGG - chr5_1:6275618-6275637 Msa0713820:intron 40.0%
!! TGCATGTCTAACTCTGAGAT+TGG - chr5_1:6275657-6275676 Msa0713820:intron 40.0%
TTTATCCTTTCCCTTTCCTC+AGG - chr5_1:6275680-6275699 Msa0713820:CDS 40.0%
TTACTAAGCACCTGAGGAAA+GGG + chr5_1:6275693-6275712 None:intergenic 40.0%
ATTACTAAGCACCTGAGGAA+AGG + chr5_1:6275694-6275713 None:intergenic 40.0%
GCTGGTCATTTGAAAGAAAC+AGG + chr5_1:6275876-6275895 None:intergenic 40.0%
TTCAAATGACCAGCAATGTG+TGG - chr5_1:6275882-6275901 Msa0713820:five_prime_UTR 40.0%
! AATTTAAGGCCACACATTGC+TGG + chr5_1:6275894-6275913 None:intergenic 40.0%
CGATAATAGAGTGCAAAGCG+AGG - chr5_1:6270186-6270205 Msa0713820:three_prime_UTR 45.0%
! TGTGGGAAGCTTTTCTGAAC+TGG - chr5_1:6270375-6270394 Msa0713820:three_prime_UTR 45.0%
! CTTTTCTGAACTGGTTACGC+AGG - chr5_1:6270384-6270403 Msa0713820:three_prime_UTR 45.0%
TCGACGTATTAGGGTGAGTT+TGG - chr5_1:6270587-6270606 Msa0713820:CDS 45.0%
CGACGTATTAGGGTGAGTTT+GGG - chr5_1:6270588-6270607 Msa0713820:CDS 45.0%
! TTTATCCCTAAGGGTGCACT+TGG + chr5_1:6270832-6270851 None:intergenic 45.0%
TTAGCACAGGGCATGCATAT+AGG + chr5_1:6270976-6270995 None:intergenic 45.0%
GAAAGTGATCCACTTAGCAC+AGG + chr5_1:6270989-6271008 None:intergenic 45.0%
! TTGCAGCCTTTTCTTCAAGC+AGG - chr5_1:6271050-6271069 Msa0713820:intron 45.0%
CCATCTCCTGCTTGAAGAAA+AGG + chr5_1:6271059-6271078 None:intergenic 45.0%
! CCTTTTCTTCAAGCAGGAGA+TGG - chr5_1:6271056-6271075 Msa0713820:intron 45.0%
CTTATAGGGCTTCAGAATGC+TGG - chr5_1:6271087-6271106 Msa0713820:intron 45.0%
TAGCAAATGGGGCAGTAGTA+AGG - chr5_1:6271339-6271358 Msa0713820:intron 45.0%
AAATGGGGCAGTAGTAAGGA+GGG - chr5_1:6271343-6271362 Msa0713820:intron 45.0%
GTAAGGAGGGAAGGATTTGA+AGG - chr5_1:6271356-6271375 Msa0713820:intron 45.0%
!! AGGGTACAGTTCTAAGTGAC+AGG - chr5_1:6271501-6271520 Msa0713820:intron 45.0%
AGGAATCAGGGAGGACAAAA+AGG - chr5_1:6271545-6271564 Msa0713820:intron 45.0%
GGAATCAGGGAGGACAAAAA+GGG - chr5_1:6271546-6271565 Msa0713820:intron 45.0%
AACGTTCCTGCTGTGTAACA+AGG - chr5_1:6271591-6271610 Msa0713820:intron 45.0%
ACGTTCCTGCTGTGTAACAA+GGG - chr5_1:6271592-6271611 Msa0713820:intron 45.0%
GATTTCCCTTGTTACACAGC+AGG + chr5_1:6271600-6271619 None:intergenic 45.0%
ACCACTAATTGTGAAGCCGA+GGG + chr5_1:6271716-6271735 None:intergenic 45.0%
AACCACTAATTGTGAAGCCG+AGG + chr5_1:6271717-6271736 None:intergenic 45.0%
! TTTTCCTGAGCTGAAGACAC+TGG - chr5_1:6271740-6271759 Msa0713820:intron 45.0%
TTATCCAGTGTCTTCAGCTC+AGG + chr5_1:6271747-6271766 None:intergenic 45.0%
GCTGAAGACACTGGATAACA+TGG - chr5_1:6271749-6271768 Msa0713820:intron 45.0%
GAAGACACTGGATAACATGG+AGG - chr5_1:6271752-6271771 Msa0713820:intron 45.0%
GGTGGCTAACAACATAACAC+CGG - chr5_1:6271824-6271843 Msa0713820:CDS 45.0%
GCAGCTTATGGCACATTAGA+AGG - chr5_1:6271906-6271925 Msa0713820:CDS 45.0%
CCATCCTTAAGAGTTGTCGA+TGG + chr5_1:6271968-6271987 None:intergenic 45.0%
CCATCGACAACTCTTAAGGA+TGG - chr5_1:6271965-6271984 Msa0713820:intron 45.0%
! GATGGATCAATTGCCACTTG+AGG - chr5_1:6271983-6272002 Msa0713820:intron 45.0%
! TCAATTGCCACTTGAGGACA+AGG - chr5_1:6271989-6272008 Msa0713820:intron 45.0%
! GCAATGGTGAAGCTAGGTTT+TGG - chr5_1:6272056-6272075 Msa0713820:intron 45.0%
GGAATTGCTCACCTCTAACA+AGG - chr5_1:6272090-6272109 Msa0713820:intron 45.0%
ATTGCTCACCTCTAACAAGG+TGG - chr5_1:6272093-6272112 Msa0713820:intron 45.0%
ATTGGTTGACTGAGGAGTTC+AGG - chr5_1:6272189-6272208 Msa0713820:intron 45.0%
AACTCTGGATGACTTCCAGA+AGG - chr5_1:6272231-6272250 Msa0713820:intron 45.0%
TCCGCTATACTAATGAGCAG+GGG - chr5_1:6272269-6272288 Msa0713820:intron 45.0%
TCCCCTGCTCATTAGTATAG+CGG + chr5_1:6272273-6272292 None:intergenic 45.0%
TTTGGGAATCCAAGCACAAG+AGG + chr5_1:6272329-6272348 None:intergenic 45.0%
!! CACATTTGGTGCAGTGGTTA+GGG - chr5_1:6272394-6272413 Msa0713820:intron 45.0%
!! ACATTTGGTGCAGTGGTTAG+GGG - chr5_1:6272395-6272414 Msa0713820:intron 45.0%
ATACCATACTGGTGGTTGAC+TGG - chr5_1:6272580-6272599 Msa0713820:intron 45.0%
! GTGGTTGACTGGTTGTTTAC+AGG - chr5_1:6272591-6272610 Msa0713820:intron 45.0%
AGCAGGTTGTACACCATTCA+AGG - chr5_1:6272940-6272959 Msa0713820:intron 45.0%
AGGTTGTACACCATTCAAGG+TGG - chr5_1:6272943-6272962 Msa0713820:intron 45.0%
ATGCAACCACAAACTTCTGC+AGG + chr5_1:6272985-6273004 None:intergenic 45.0%
AAACCTGCTAGCATCCAAGA+AGG - chr5_1:6273100-6273119 Msa0713820:intron 45.0%
ACAATGGACAATGGCCTTCT+TGG + chr5_1:6273117-6273136 None:intergenic 45.0%
AGGTGAATTTGATGCTGCTC+AGG + chr5_1:6273255-6273274 None:intergenic 45.0%
AGGTGCATACAAGAAGGTAG+AGG - chr5_1:6273536-6273555 Msa0713820:intron 45.0%
TACAAGAAGGTAGAGGTTGC+TGG - chr5_1:6273543-6273562 Msa0713820:intron 45.0%
! TCATGGACTGCAGAAAATGG+TGG + chr5_1:6273754-6273773 None:intergenic 45.0%
TGCAGGTGGGATTCAATATG+AGG - chr5_1:6274139-6274158 Msa0713820:intron 45.0%
AGTAACGTTCCCACATGCTA+CGG + chr5_1:6274224-6274243 None:intergenic 45.0%
TATTGCCTAGCAATCGACTG+AGG - chr5_1:6274466-6274485 Msa0713820:intron 45.0%
! CTTTGAGCGTTGTCTTTGTC+GGG - chr5_1:6274779-6274798 Msa0713820:intron 45.0%
TCTAAGAGGCAGAGAATCCT+TGG + chr5_1:6274998-6275017 None:intergenic 45.0%
GGAAACAAGATTGACAAGGC+AGG - chr5_1:6275253-6275272 Msa0713820:intron 45.0%
AGGGACGCGTATCTTACATT+TGG + chr5_1:6275306-6275325 None:intergenic 45.0%
! GATACGCGTCCCTTTTATTC+TGG - chr5_1:6275313-6275332 Msa0713820:intron 45.0%
!! GTTTGGTTCTAAGTGCTCTC+TGG - chr5_1:6275438-6275457 Msa0713820:intron 45.0%
CAAAGCGAGGGAAGAAGGAT+AGG - chr5_1:6270199-6270218 Msa0713820:three_prime_UTR 50.0%
CTCTTCCAAGTGCACCCTTA+GGG - chr5_1:6270824-6270843 Msa0713820:CDS 50.0%
TATGCATGCCCTGTGCTAAG+TGG - chr5_1:6270977-6270996 Msa0713820:intron 50.0%
CAAATGGGGCAGTAGTAAGG+AGG - chr5_1:6271342-6271361 Msa0713820:intron 50.0%
CAAGGGAAATCTCCCTCAGT+TGG - chr5_1:6271609-6271628 Msa0713820:intron 50.0%
TCCCTCGGCTTCACAATTAG+TGG - chr5_1:6271712-6271731 Msa0713820:intron 50.0%
! TTGCCACTTGAGGACAAGGA+TGG - chr5_1:6271993-6272012 Msa0713820:intron 50.0%
TTGAGGACAAGGATGGCAGA+TGG - chr5_1:6272000-6272019 Msa0713820:intron 50.0%
AATGGTCAGGGATCTCTGAG+CGG - chr5_1:6272034-6272053 Msa0713820:intron 50.0%
CAGGGGAACTTGCACTACAA+GGG - chr5_1:6272286-6272305 Msa0713820:intron 50.0%
GGAACTTGCACTACAAGGGT+AGG - chr5_1:6272290-6272309 Msa0713820:intron 50.0%
CTTGCACTACAAGGGTAGGA+TGG - chr5_1:6272294-6272313 Msa0713820:intron 50.0%
TGCTAACAGCCTCTTGTGCT+TGG - chr5_1:6272317-6272336 Msa0713820:intron 50.0%
!! GCACATTTGGTGCAGTGGTT+AGG - chr5_1:6272393-6272412 Msa0713820:intron 50.0%
CAACCAGTCAACCACCAGTA+TGG + chr5_1:6272586-6272605 None:intergenic 50.0%
GAGCATGAGCAAATTCTGGC+AGG - chr5_1:6272748-6272767 Msa0713820:intron 50.0%
!! CTGCATTGACTCTGATGAGC+AGG - chr5_1:6272796-6272815 Msa0713820:intron 50.0%
! ATTGACTCTGATGAGCAGGC+AGG - chr5_1:6272800-6272819 Msa0713820:intron 50.0%
ACAGACACTCTGCCCAAGTA+AGG + chr5_1:6272898-6272917 None:intergenic 50.0%
! ACCAATTTTCACGGGACAGC+AGG - chr5_1:6272923-6272942 Msa0713820:intron 50.0%
ACCTGCTGTCCCGTGAAAAT+TGG + chr5_1:6272927-6272946 None:intergenic 50.0%
TGCACACCTGCAGAAGTTTG+TGG - chr5_1:6272976-6272995 Msa0713820:intron 50.0%
TGCTAGCAGGTTTCGTATGC+TGG + chr5_1:6273093-6273112 None:intergenic 50.0%
CAAGGGATAGGACATACGAG+TGG - chr5_1:6273142-6273161 Msa0713820:intron 50.0%
CACCACATTCTGCACTGCAT+TGG - chr5_1:6273355-6273374 Msa0713820:intron 50.0%
AGCCAATGCAGTGCAGAATG+TGG + chr5_1:6273360-6273379 None:intergenic 50.0%
!! CAGAAGGGGGAAGGTTTTGA+AGG - chr5_1:6273516-6273535 Msa0713820:intron 50.0%
AGAAGGTAGAGGTTGCTGGA+AGG - chr5_1:6273547-6273566 Msa0713820:intron 50.0%
AACCTAGGTTCCGTAGCATG+TGG - chr5_1:6274211-6274230 Msa0713820:intron 50.0%
ACCTAGGTTCCGTAGCATGT+GGG - chr5_1:6274212-6274231 Msa0713820:intron 50.0%
GGAAAGGCTCTTTACTCAGC+AGG + chr5_1:6274672-6274691 None:intergenic 50.0%
GCTGAGTAAAGAGCCTTTCC+TGG - chr5_1:6274672-6274691 Msa0713820:intron 50.0%
CTGAGCAAGCCATCATTGAG+TGG - chr5_1:6275211-6275230 Msa0713820:intron 50.0%
!! TGGTTCTAAGTGCTCTCTGG+TGG - chr5_1:6275441-6275460 Msa0713820:intron 50.0%
AAGCACCTGAGGAAAGGGAA+AGG + chr5_1:6275688-6275707 None:intergenic 50.0%
GAGTGCAAAGCGAGGGAAGA+AGG - chr5_1:6270194-6270213 Msa0713820:three_prime_UTR 55.0%
GCGAGGGAAGAAGGATAGGA+AGG - chr5_1:6270203-6270222 Msa0713820:three_prime_UTR 55.0%
GCTCTTCCAAGTGCACCCTT+AGG - chr5_1:6270823-6270842 Msa0713820:CDS 55.0%
TTAGACCGGTGGATACAGCG+AGG - chr5_1:6271228-6271247 Msa0713820:intron 55.0%
CATGTCCTCGCTGTATCCAC+CGG + chr5_1:6271236-6271255 None:intergenic 55.0%
GGAAGTAGTCAGTGTCGCAG+AGG - chr5_1:6271803-6271822 Msa0713820:intron 55.0%
AGTAGTCAGTGTCGCAGAGG+TGG - chr5_1:6271806-6271825 Msa0713820:intron 55.0%
CTGCCATCCTTGTCCTCAAG+TGG + chr5_1:6271999-6272018 None:intergenic 55.0%
AGGACAAGGATGGCAGATGG+AGG - chr5_1:6272003-6272022 Msa0713820:intron 55.0%
GGACAAGGATGGCAGATGGA+GGG - chr5_1:6272004-6272023 Msa0713820:intron 55.0%
GACAAGGATGGCAGATGGAG+GGG - chr5_1:6272005-6272024 Msa0713820:intron 55.0%
GATGGCAGATGGAGGGGAAT+GGG - chr5_1:6272011-6272030 Msa0713820:intron 55.0%
CAGATGGAGGGGAATGGGAA+TGG - chr5_1:6272016-6272035 Msa0713820:intron 55.0%
GAGGGGAATGGGAATGGTCA+GGG - chr5_1:6272022-6272041 Msa0713820:intron 55.0%
TGAGCGGCAATGGTGAAGCT+AGG - chr5_1:6272050-6272069 Msa0713820:intron 55.0%
GCAGGGGAACTTGCACTACA+AGG - chr5_1:6272285-6272304 Msa0713820:intron 55.0%
!! GGTTGGCACATTTGGTGCAG+TGG - chr5_1:6272388-6272407 Msa0713820:intron 55.0%
GTGCAGTGGTTAGGGGTGAA+AGG - chr5_1:6272402-6272421 Msa0713820:intron 55.0%
GGAAGAGGTAGCAAGCTTGC+AGG + chr5_1:6272492-6272511 None:intergenic 55.0%
GCAGGTTTCGTATGCTGGTC+TGG + chr5_1:6273088-6273107 None:intergenic 55.0%
TGGCCTTCTTGGATGCTAGC+AGG + chr5_1:6273106-6273125 None:intergenic 55.0%
GGATAGGACATACGAGTGGC+AGG - chr5_1:6273146-6273165 Msa0713820:intron 55.0%
ATAACACTGCTCCCACCTCC+TGG + chr5_1:6273315-6273334 None:intergenic 55.0%
TCCCACATGCTACGGAACCT+AGG + chr5_1:6274216-6274235 None:intergenic 55.0%
GTGGGAACGTTACTGTCGTG+CGG - chr5_1:6274230-6274249 Msa0713820:intron 55.0%
TGCCTAGCAATCGACTGAGG+TGG - chr5_1:6274469-6274488 Msa0713820:intron 55.0%
CACCACCTCAGTCGATTGCT+AGG + chr5_1:6274474-6274493 None:intergenic 55.0%
AGCGTTGTCTTTGTCGGGCA+AGG - chr5_1:6274784-6274803 Msa0713820:intron 55.0%
! TAAGTGCTCTCTGGTGGTGC+AGG - chr5_1:6275447-6275466 Msa0713820:intron 55.0%
! AAGTGCTCTCTGGTGGTGCA+GGG - chr5_1:6275448-6275467 Msa0713820:intron 55.0%
GGGGCAGTAGTAAGGAGGGA+AGG - chr5_1:6271347-6271366 Msa0713820:intron 60.0%
GGATGGCAGATGGAGGGGAA+TGG - chr5_1:6272010-6272029 Msa0713820:intron 60.0%
GGAGGGGAATGGGAATGGTC+AGG - chr5_1:6272021-6272040 Msa0713820:intron 60.0%
CAGGGATCTCTGAGCGGCAA+TGG - chr5_1:6272040-6272059 Msa0713820:intron 60.0%
AGGCAGTGGCAGCAGTCAGA+AGG - chr5_1:6273500-6273519 Msa0713820:intron 60.0%
GGCAGTGGCAGCAGTCAGAA+GGG - chr5_1:6273501-6273520 Msa0713820:intron 60.0%
GCAGTGGCAGCAGTCAGAAG+GGG - chr5_1:6273502-6273521 Msa0713820:intron 60.0%
CAGTGGCAGCAGTCAGAAGG+GGG - chr5_1:6273503-6273522 Msa0713820:intron 60.0%
! GAGGAAGGTCTTGGGGCACC+AGG - chr5_1:6273294-6273313 Msa0713820:intron 65.0%
! GAAGGTCTTGGGGCACCAGG+AGG - chr5_1:6273297-6273316 Msa0713820:intron 65.0%
! GTCTTGGGGCACCAGGAGGT+GGG - chr5_1:6273301-6273320 Msa0713820:intron 65.0%
GGCAGCAGTCAGAAGGGGGA+AGG - chr5_1:6273507-6273526 Msa0713820:intron 65.0%
GGGATCTTGGGGGGCAACCT+AGG - chr5_1:6274196-6274215 Msa0713820:intron 65.0%
! GGTCTTGGGGCACCAGGAGG+TGG - chr5_1:6273300-6273319 Msa0713820:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6270159 6275919 6270159 ID=Msa0713820;Name=Msa0713820
chr5_1 mRNA 6270159 6275919 6270159 ID=Msa0713820-mRNA-1;Parent=Msa0713820;Name=Msa0713820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=209|1|1|1|0.8|1|6|333|184
chr5_1 exon 6270159 6270609 6270159 ID=Msa0713820-mRNA-1:exon:2655;Parent=Msa0713820-mRNA-1
chr5_1 exon 6270770 6270931 6270770 ID=Msa0713820-mRNA-1:exon:2654;Parent=Msa0713820-mRNA-1
chr5_1 exon 6271813 6271934 6271813 ID=Msa0713820-mRNA-1:exon:2653;Parent=Msa0713820-mRNA-1
chr5_1 exon 6274814 6274846 6274814 ID=Msa0713820-mRNA-1:exon:2652;Parent=Msa0713820-mRNA-1
chr5_1 exon 6274941 6275022 6274941 ID=Msa0713820-mRNA-1:exon:2651;Parent=Msa0713820-mRNA-1
chr5_1 exon 6275673 6275919 6275673 ID=Msa0713820-mRNA-1:exon:2650;Parent=Msa0713820-mRNA-1
chr5_1 five_prime_UTR 6275711 6275919 6275711 ID=Msa0713820-mRNA-1:five_prime_utr;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6275673 6275710 6275673 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6274941 6275022 6274941 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6274814 6274846 6274814 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6271813 6271934 6271813 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6270770 6270931 6270770 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 CDS 6270492 6270609 6270492 ID=Msa0713820-mRNA-1:cds;Parent=Msa0713820-mRNA-1
chr5_1 three_prime_UTR 6270159 6270491 6270159 ID=Msa0713820-mRNA-1:three_prime_utr;Parent=Msa0713820-mRNA-1
Gene Sequence

>Msa0713820

ATGGGATTGTGGGAAGCTTTTCTGAACTGGTTACGCAGCCTTTTCTTCAAGCAGGAGATGGAGTTATCTCTTATAGGGCTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACCGGTGGATACAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATAAAGTTATGGGATCTTGGGGGGCAACCTAGGTTCCGTAGCATGTGGGAACGTTACTGTCGTGCGGTTTCCGCTATTGTTTATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAGCCATCATTGAGTGGTATCCCTTTATTGGTGTTGGGAAACAAGATTGACAAGGCAGGGGCTCTGTCTAAACAAGCTTTGACCGACCAAATGGATCTGAAATCAATTACTGATAGAGAAGTTTGTTGCTTCATGATCTCGTGCAAAAACTCAACCAACATCGACTCTGTTATTGACTGGCTTGTGAAGCATTCCAAATCAAAGAGCTAA

Protein sequence

>Msa0713820

MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*