AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081930 MtrunA17_Chr7g0269271 99.074 108 1 0 1 108 1 108 3.96e-76 229
Msa1081930 MtrunA17_Chr1g0195701 56.757 222 51 6 1 216 1 183 1.47e-72 218
Msa1081930 MtrunA17_Chr6g0465301 51.724 116 56 0 1 116 1 116 2.83e-38 131
Msa1081930 MtrunA17_Chr6g0460991 48.624 109 55 1 1 109 1 108 3.89e-33 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081930 AT4G02450.2 62.832 113 41 1 1 113 1 112 2.19e-48 159
Msa1081930 AT4G02450.1 62.832 113 41 1 1 113 1 112 2.25e-48 159
Msa1081930 AT3G03773.1 43.836 146 77 3 1 143 1 144 5.42e-35 121
Msa1081930 AT3G03773.3 52.212 113 52 2 1 113 1 111 6.41e-35 120
Msa1081930 AT3G03773.2 46.565 131 65 3 1 128 55 183 2.53e-33 119

Find 99 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATAGATTGGGATAAA+TGG 0.128154 7_2:-81825964 Msa1081930:CDS
TGGAAATTGTCACAATATTT+AGG 0.144003 7_2:+81823502 None:intergenic
CAAAATACTTGAATCATTAA+AGG 0.220029 7_2:-81823459 Msa1081930:three_prime_UTR
CACTAACCAAAGAAGGAATT+AGG 0.235168 7_2:-81827033 Msa1081930:five_prime_UTR
TAAAACCCTAATTCCTTCTT+TGG 0.259582 7_2:+81827027 None:intergenic
ATGGGAGGCATGGGCGGCTT+GGG 0.312741 7_2:-81825410 Msa1081930:CDS
CCAGCAGCATCTTGCTCTCC+AGG 0.348935 7_2:+81823844 None:intergenic
GGGCGGCTTGGGAGGAATGA+TGG 0.360240 7_2:-81825399 Msa1081930:CDS
CTCATTATGTGAAAATAGAT+TGG 0.366482 7_2:-81825973 Msa1081930:CDS
ACTAACCAAAGAAGGAATTA+GGG 0.393297 7_2:-81827032 Msa1081930:five_prime_UTR
GAAAAGGTAAAATCACCTTC+TGG 0.394930 7_2:+81826351 None:intergenic
GGCGGCTTGGGAGGAATGAT+GGG 0.395763 7_2:-81825398 Msa1081930:CDS
TGTGTACTGCAGAAATTTGC+TGG 0.400858 7_2:-81825241 Msa1081930:intron
GAAAATAGATTGGGATAAAT+GGG 0.403064 7_2:-81825963 Msa1081930:CDS
GGAGGCATGGGCGGCTTGGG+AGG 0.412828 7_2:-81825407 Msa1081930:CDS
TTCTGGAGTAAGATCAACTT+TGG 0.412841 7_2:+81826368 None:intergenic
GATGCTGCTGGCAAGAGCGC+TGG 0.414372 7_2:-81823832 Msa1081930:CDS
AATGGGAGGCATGGGCGGCT+TGG 0.421152 7_2:-81825411 Msa1081930:CDS
GGAGGAATGGGAGGCATGGG+CGG 0.422053 7_2:-81825416 Msa1081930:CDS
TGCAAGGTTATTATGTGCTC+GGG 0.426606 7_2:+81823776 None:intergenic
AGATTTATTTAATGCATGAA+TGG 0.431115 7_2:-81823618 Msa1081930:three_prime_UTR
CTGCAAGGTTATTATGTGCT+CGG 0.431755 7_2:+81823775 None:intergenic
CTAAACTAAACGCATTGAAC+GGG 0.431934 7_2:-81823405 Msa1081930:three_prime_UTR
AATGGGAGGCATGGGAGGAA+TGG 0.435114 7_2:-81825363 Msa1081930:CDS
GCGGCTTGGGAGGAATGATG+GGG 0.439489 7_2:-81825397 Msa1081930:CDS
GGAGGAATGGGAGGCATGGG+AGG 0.441962 7_2:-81825368 Msa1081930:CDS
CTGCAGAAATTCGGCGGGAT+GGG 0.442879 7_2:-81825455 Msa1081930:intron
GATGATCCAATGGGAGGAAT+GGG 0.449196 7_2:-81825428 Msa1081930:CDS
GAGATTGTACCTCATGTTGT+TGG 0.449846 7_2:+81826969 None:intergenic
CGGCTTGGGAGGAATGATGG+GGG 0.450615 7_2:-81825396 Msa1081930:CDS
TTTCTGTCACTAACCAAAGA+AGG 0.451360 7_2:-81827040 Msa1081930:five_prime_UTR
ATGCCTCCCATTCCTCCCAT+TGG 0.456440 7_2:+81825422 None:intergenic
ATGGGAGGAATGGGAGGCAT+GGG 0.458260 7_2:-81825371 Msa1081930:CDS
CATGGGAGGAATGGGAGGCA+TGG 0.459907 7_2:-81825372 Msa1081930:CDS
ATGGGAGGAATGGGAGGCAT+GGG 0.470038 7_2:-81825419 Msa1081930:CDS
GTCGTCATCCCGAGGTTAAG+TGG 0.476828 7_2:-81826446 Msa1081930:CDS
AATGGAAGGACTGGGAGGAA+TGG 0.482020 7_2:-81825345 Msa1081930:CDS
TGTGTACTACTGCAGAAATT+CGG 0.482929 7_2:-81825464 Msa1081930:intron
CATGGGAGGAATGGAAGGAC+TGG 0.485477 7_2:-81825354 Msa1081930:CDS
TCATTATGTGAAAATAGATT+GGG 0.486084 7_2:-81825972 Msa1081930:CDS
AGCACCAGCACTACCAGAAA+AGG 0.488899 7_2:+81826335 None:intergenic
CTCTGTGCCCACTTAACCTC+GGG 0.490812 7_2:+81826438 None:intergenic
CCTGGAGAGCAAGATGCTGC+TGG 0.496634 7_2:-81823844 Msa1081930:CDS
CTGAGAGTGGATGGTGGAAG+AGG 0.498153 7_2:-81826021 Msa1081930:CDS
AATGGGAGGAATGGGAGGCA+TGG 0.503653 7_2:-81825420 Msa1081930:CDS
GATCAAGAAGTGTCAAAGCC+TGG 0.508961 7_2:-81823862 Msa1081930:CDS
ACTAAACTAAACGCATTGAA+CGG 0.513815 7_2:-81823406 Msa1081930:three_prime_UTR
TGATGATCCAATGGGAGGAA+TGG 0.517095 7_2:-81825429 Msa1081930:CDS
GGAGGCATGGGAGGAATGGA+AGG 0.525417 7_2:-81825359 Msa1081930:CDS
AAGAGGTTGCTGCGTGGAGA+AGG 0.527175 7_2:-81826004 Msa1081930:CDS
ACTGCAGAAATTCGGCGGGA+TGG 0.533257 7_2:-81825456 Msa1081930:intron
GGCTTGGGAGGAATGATGGG+GGG 0.535535 7_2:-81825395 Msa1081930:CDS
TGGGATGGGTGGTGATGCAA+TGG 0.535642 7_2:-81825221 Msa1081930:CDS
TGCTGGCAAGAGCGCTGGTG+AGG 0.538363 7_2:-81823827 Msa1081930:CDS
TTCCTCTTTGTGCCATTCAG+TGG 0.541151 7_2:-81823710 Msa1081930:three_prime_UTR
CATATTCTGTGTAGTGCAGA+AGG 0.542490 7_2:-81826044 Msa1081930:CDS
ACTGCAGAAATTTGCTGGGA+TGG 0.543444 7_2:-81825236 Msa1081930:intron
GGTCTACATCACAGTGCAGT+TGG 0.544236 7_2:-81826406 Msa1081930:CDS
AAAGTTGATCTTACTCCAGA+AGG 0.549028 7_2:-81826366 Msa1081930:CDS
CACTTAAAACTACCACTGAA+TGG 0.550195 7_2:+81823698 None:intergenic
GATGGGTGGTGATGATCCAA+TGG 0.551280 7_2:-81825438 Msa1081930:CDS
CAGAAATTCGGCGGGATGGG+TGG 0.555897 7_2:-81825452 Msa1081930:CDS
TACTACTGCAGAAATTCGGC+GGG 0.556423 7_2:-81825460 Msa1081930:intron
TGCTGTGTTGACTTAACAGT+AGG 0.559983 7_2:-81823655 Msa1081930:three_prime_UTR
GATGAAGATGAGGCTGAAGA+AGG 0.560115 7_2:-81825938 Msa1081930:intron
CTGCAGAAATTTGCTGGGAT+GGG 0.566994 7_2:-81825235 Msa1081930:intron
GTTGCTGCGTGGAGAAGGCA+AGG 0.570508 7_2:-81825999 Msa1081930:CDS
TCTAGCCAGCGCTGTCTCGA+TGG 0.574127 7_2:-81823583 Msa1081930:three_prime_UTR
TCTTCAAATCTTGCACTGCA+AGG 0.577046 7_2:+81823760 None:intergenic
GTCTCGATGGAAAAGAATGT+TGG 0.578060 7_2:-81823570 Msa1081930:three_prime_UTR
CTTTGACAAGGTTAATGTAG+AGG 0.578313 7_2:-81826280 Msa1081930:intron
ACTACTGTGATTAAACCTTG+TGG 0.578622 7_2:+81823482 None:intergenic
CAGGAGAGCAAAATCAGTGT+AGG 0.585626 7_2:-81826076 Msa1081930:CDS
ATGGGAGGAATGGAAGGACT+GGG 0.592383 7_2:-81825353 Msa1081930:CDS
TGCAGAAGGCTGAGAGTGGA+TGG 0.594343 7_2:-81826030 Msa1081930:CDS
TCTCTGTGCCCACTTAACCT+CGG 0.594623 7_2:+81826437 None:intergenic
GATCCAATGGGAGGAATGGG+AGG 0.596994 7_2:-81825425 Msa1081930:CDS
CAGAAATTTGCTGGGATGGG+TGG 0.597276 7_2:-81825232 Msa1081930:CDS
TTTATTTAATGCATGAATGG+CGG 0.605112 7_2:-81823615 Msa1081930:three_prime_UTR
TCGTCATCCCGAGGTTAAGT+GGG 0.605727 7_2:-81826445 Msa1081930:CDS
ATTGACGAGAGTGACGATGA+AGG 0.607086 7_2:-81825193 Msa1081930:intron
ATGGGTGGTGATGATCCAAT+GGG 0.611795 7_2:-81825437 Msa1081930:CDS
GTGTACTGCAGAAATTTGCT+GGG 0.618065 7_2:-81825240 Msa1081930:intron
CAATCAAATCCAACAACATG+AGG 0.619501 7_2:-81826978 Msa1081930:intron
GTGGGCACAGAGAGTAGACA+AGG 0.620515 7_2:-81826427 Msa1081930:CDS
GTTAAGTCAACACAGCAAAG+AGG 0.628057 7_2:+81823661 None:intergenic
GAAACTTGAGCTCTTTGACA+AGG 0.629398 7_2:-81826292 Msa1081930:CDS
TACCACTGAATGGCACAAAG+AGG 0.642685 7_2:+81823708 None:intergenic
GGAGGAATGGAAGGACTGGG+AGG 0.646274 7_2:-81825350 Msa1081930:CDS
ATGATGCAGTCGTCATCCCG+AGG 0.646727 7_2:-81826454 Msa1081930:intron
TAAATGGGTCGATGAAGATG+AGG 0.649358 7_2:-81825948 Msa1081930:CDS
GTACTACTGCAGAAATTCGG+CGG 0.650088 7_2:-81825461 Msa1081930:intron
GTAGTGCAGAAGGCTGAGAG+TGG 0.686588 7_2:-81826034 Msa1081930:CDS
GGTGGTGATGATCCAATGGG+AGG 0.688264 7_2:-81825434 Msa1081930:CDS
ATATTGTGACAATTTCCACA+AGG 0.689071 7_2:-81823497 Msa1081930:three_prime_UTR
GCAAGGTTATTATGTGCTCG+GGG 0.703220 7_2:+81823777 None:intergenic
ACACAGCAAAGAGGACACAA+AGG 0.705271 7_2:+81823670 None:intergenic
AGAAGGCTGAGAGTGGATGG+TGG 0.722955 7_2:-81826027 Msa1081930:CDS
TGGTGGAAGAGGTTGCTGCG+TGG 0.748724 7_2:-81826010 Msa1081930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTTGATATTAATTTT+TGG - chr7_2:81824693-81824712 Msa1081930:intron 10.0%
!!! TTTTGTTGATATTAATTTTT+GGG - chr7_2:81824694-81824713 Msa1081930:intron 10.0%
!!! TATTAATTTATGATTTTCTT+CGG - chr7_2:81825708-81825727 Msa1081930:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + chr7_2:81825756-81825775 None:intergenic 10.0%
!! AGATTATTAATTTCAATTTA+GGG - chr7_2:81826162-81826181 Msa1081930:intron 10.0%
!! TATCCATTAAAAAAATTCAA+AGG + chr7_2:81824537-81824556 None:intergenic 15.0%
!!! TTTGAATTTTTTTAATGGAT+AGG - chr7_2:81824536-81824555 Msa1081930:intron 15.0%
!! CTCTATAAATTAATAATTTC+AGG - chr7_2:81825395-81825414 Msa1081930:CDS 15.0%
!! TCTAAATTAATAAATTTCTC+CGG + chr7_2:81825422-81825441 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG - chr7_2:81825784-81825803 Msa1081930:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG + chr7_2:81825822-81825841 None:intergenic 15.0%
!! GAGATTATTAATTTCAATTT+AGG - chr7_2:81826161-81826180 Msa1081930:intron 15.0%
!!! ACTTATCTTTTCAATTGATT+TGG - chr7_2:81823615-81823634 Msa1081930:three_prime_UTR 20.0%
!! AAACTATGAAACAAAATGTT+AGG - chr7_2:81823728-81823747 Msa1081930:three_prime_UTR 20.0%
!! AACTATGAAACAAAATGTTA+GGG - chr7_2:81823729-81823748 Msa1081930:three_prime_UTR 20.0%
!!! TTATTAGAGCTGTTTTAAAA+TGG - chr7_2:81823911-81823930 Msa1081930:intron 20.0%
!!! GTTTTGATTTATATGCTTAT+CGG - chr7_2:81823942-81823961 Msa1081930:intron 20.0%
!! TCATTATGTGAAAATAGATT+GGG - chr7_2:81824463-81824482 Msa1081930:intron 20.0%
!!! TGTCCTTTGAATTTTTTTAA+TGG - chr7_2:81824531-81824550 Msa1081930:intron 20.0%
!!! GGACAACAATATATTTTTAT+TGG - chr7_2:81824557-81824576 Msa1081930:intron 20.0%
!! TAAATTAATAATTTCAGGAC+CGG - chr7_2:81825400-81825419 Msa1081930:CDS 20.0%
!! AAACTCTTTGAATTAATACT+CGG + chr7_2:81825860-81825879 None:intergenic 20.0%
!! TAAGAAAAAGGAAATTAAAG+GGG + chr7_2:81826370-81826389 None:intergenic 20.0%
!! CTAAGAAAAAGGAAATTAAA+GGG + chr7_2:81826371-81826390 None:intergenic 20.0%
!! ACTAAGAAAAAGGAAATTAA+AGG + chr7_2:81826372-81826391 None:intergenic 20.0%
!! AGATTTATTTAATGCATGAA+TGG - chr7_2:81826817-81826836 Msa1081930:intron 20.0%
!! CAAAATACTTGAATCATTAA+AGG - chr7_2:81826976-81826995 Msa1081930:intron 20.0%
! ACTATGAAACAAAATGTTAG+GGG - chr7_2:81823730-81823749 Msa1081930:three_prime_UTR 25.0%
! ATAATTAAATCATGCCTCTA+TGG - chr7_2:81823766-81823785 Msa1081930:three_prime_UTR 25.0%
! CTTTCTTGTATATGACTATT+TGG - chr7_2:81823857-81823876 Msa1081930:CDS 25.0%
!!! AAGATCAACTTTGGAATTTT+TGG + chr7_2:81824061-81824080 None:intergenic 25.0%
!! CAATCTATTTTCACATAATG+AGG + chr7_2:81824464-81824483 None:intergenic 25.0%
! CTCATTATGTGAAAATAGAT+TGG - chr7_2:81824462-81824481 Msa1081930:intron 25.0%
! TGAAAATAGATTGGGATAAA+TGG - chr7_2:81824471-81824490 Msa1081930:intron 25.0%
! GAAAATAGATTGGGATAAAT+GGG - chr7_2:81824472-81824491 Msa1081930:intron 25.0%
! ATCAACAAAATGATACAACT+GGG + chr7_2:81824684-81824703 None:intergenic 25.0%
! TATCAACAAAATGATACAAC+TGG + chr7_2:81824685-81824704 None:intergenic 25.0%
! AGAAATATTGTAGTGAGAAA+TGG + chr7_2:81824831-81824850 None:intergenic 25.0%
!!! CATGATACTTAGATTTTTTG+TGG - chr7_2:81825346-81825365 Msa1081930:CDS 25.0%
!!! TAAGATAATAATTTTTCGGG+AGG + chr7_2:81825753-81825772 None:intergenic 25.0%
!!! GACAATGTAGCTTTAAATAT+TGG - chr7_2:81825942-81825961 Msa1081930:CDS 25.0%
! ACACTTCTTGATCTATAATT+GGG + chr7_2:81826566-81826585 None:intergenic 25.0%
! TTTATTTAATGCATGAATGG+CGG - chr7_2:81826820-81826839 Msa1081930:intron 25.0%
! TGGAAATTGTCACAATATTT+AGG + chr7_2:81826936-81826955 None:intergenic 25.0%
ACTAACCAAAGAAGGAATTA+GGG - chr7_2:81823403-81823422 Msa1081930:three_prime_UTR 30.0%
TAAAACCCTAATTCCTTCTT+TGG + chr7_2:81823411-81823430 None:intergenic 30.0%
! AAGAAGGAATTAGGGTTTTA+CGG - chr7_2:81823411-81823430 Msa1081930:three_prime_UTR 30.0%
TGATTGAAGATGAGAAAAAG+AGG + chr7_2:81823443-81823462 None:intergenic 30.0%
ACAAGCTTATGTGCTTAAAT+CGG + chr7_2:81823554-81823573 None:intergenic 30.0%
AACAAGTCGTCAAATTCAAA+GGG + chr7_2:81823664-81823683 None:intergenic 30.0%
AAACAAGTCGTCAAATTCAA+AGG + chr7_2:81823665-81823684 None:intergenic 30.0%
!!! CTGTTTTAAAATGGATGTGT+TGG - chr7_2:81823920-81823939 Msa1081930:intron 30.0%
CTATGTCCTAAAATGAAAGA+TGG - chr7_2:81824183-81824202 Msa1081930:intron 30.0%
! TAAGGACCATCTTTCATTTT+AGG + chr7_2:81824192-81824211 None:intergenic 30.0%
CATTCAGGTAAACATTCATA+AGG + chr7_2:81824210-81824229 None:intergenic 30.0%
! TTACCTGAATGAGTTGAATA+AGG - chr7_2:81824219-81824238 Msa1081930:intron 30.0%
!!! AAGCATTTTTAGAATGGTTG+TGG - chr7_2:81824280-81824299 Msa1081930:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG - chr7_2:81824748-81824767 Msa1081930:intron 30.0%
!! CTATTTCTAACCTCTTCAAT+TGG - chr7_2:81824849-81824868 Msa1081930:intron 30.0%
CAACGTAAAACATCAATAGA+AGG + chr7_2:81824944-81824963 None:intergenic 30.0%
ACTGTACATACCAAACAAAA+AGG - chr7_2:81825502-81825521 Msa1081930:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG + chr7_2:81825515-81825534 None:intergenic 30.0%
CTAATTTACATTACGTCTCA+AGG + chr7_2:81825567-81825586 None:intergenic 30.0%
GTACAGTAAATGTAAACAAG+AGG - chr7_2:81825633-81825652 Msa1081930:intron 30.0%
TTCGGACCGAAAATTATAAA+GGG - chr7_2:81825726-81825745 Msa1081930:intron 30.0%
! ATATGCTTTTATGTAGAAGC+AGG - chr7_2:81825888-81825907 Msa1081930:intron 30.0%
TAAAGTTCGTTGTTAACATG+AGG - chr7_2:81825971-81825990 Msa1081930:CDS 30.0%
AAAGTTCGTTGTTAACATGA+GGG - chr7_2:81825972-81825991 Msa1081930:CDS 30.0%
GTAGTTTAGCATCAATTCTT+TGG - chr7_2:81826336-81826355 Msa1081930:CDS 30.0%
ATGTCAAGCAACTAAGAAAA+AGG + chr7_2:81826382-81826401 None:intergenic 30.0%
! TTTTTCTTAGTTGCTTGACA+TGG - chr7_2:81826381-81826400 Msa1081930:CDS 30.0%
TGATCTATAATTGGGAAACA+CGG + chr7_2:81826558-81826577 None:intergenic 30.0%
GACACTTCTTGATCTATAAT+TGG + chr7_2:81826567-81826586 None:intergenic 30.0%
!!! ATTCAGTGGTAGTTTTAAGT+GGG - chr7_2:81826739-81826758 Msa1081930:intron 30.0%
ATATTGTGACAATTTCCACA+AGG - chr7_2:81826938-81826957 Msa1081930:intron 30.0%
ACTAAACTAAACGCATTGAA+CGG - chr7_2:81827029-81827048 Msa1081930:five_prime_UTR 30.0%
TTTCTGTCACTAACCAAAGA+AGG - chr7_2:81823395-81823414 Msa1081930:three_prime_UTR 35.0%
CACTAACCAAAGAAGGAATT+AGG - chr7_2:81823402-81823421 Msa1081930:three_prime_UTR 35.0%
TGAAGATGAGAAAAAGAGGT+AGG + chr7_2:81823439-81823458 None:intergenic 35.0%
CAATCAAATCCAACAACATG+AGG - chr7_2:81823457-81823476 Msa1081930:three_prime_UTR 35.0%
CTTATGTGCTTAAATCGGAA+GGG + chr7_2:81823549-81823568 None:intergenic 35.0%
TCAAAGGGTGAGTAACAAAT+CGG + chr7_2:81823649-81823668 None:intergenic 35.0%
!! ACAAAATGTTAGGGGTATCT+TGG - chr7_2:81823738-81823757 Msa1081930:three_prime_UTR 35.0%
ATCTGCATCAATTACCATAG+AGG + chr7_2:81823783-81823802 None:intergenic 35.0%
GTAATTGATGCAGATTGTGA+TGG - chr7_2:81823788-81823807 Msa1081930:CDS 35.0%
!! TTCTGGAGTAAGATCAACTT+TGG + chr7_2:81824070-81824089 None:intergenic 35.0%
! AAAGTTGATCTTACTCCAGA+AGG - chr7_2:81824069-81824088 Msa1081930:intron 35.0%
GAAAAGGTAAAATCACCTTC+TGG + chr7_2:81824087-81824106 None:intergenic 35.0%
! GAAGGTGATTTTACCTTTTC+TGG - chr7_2:81824087-81824106 Msa1081930:intron 35.0%
CTTTGACAAGGTTAATGTAG+AGG - chr7_2:81824155-81824174 Msa1081930:intron 35.0%
AGTCCTTATTCAACTCATTC+AGG + chr7_2:81824225-81824244 None:intergenic 35.0%
ATGCTTTGCTTGCAAAGATA+TGG - chr7_2:81824305-81824324 Msa1081930:intron 35.0%
GAAATCTGATCGAATTGTCT+CGG - chr7_2:81824579-81824598 Msa1081930:intron 35.0%
! CGAATTGTCTCGGTTTTTAT+TGG - chr7_2:81824589-81824608 Msa1081930:intron 35.0%
TTCCTTAACAAGTGCCTTAA+GGG + chr7_2:81824736-81824755 None:intergenic 35.0%
TTTCCTTAACAAGTGCCTTA+AGG + chr7_2:81824737-81824756 None:intergenic 35.0%
! TAATGCAAGCCTACTACTTT+TGG + chr7_2:81824760-81824779 None:intergenic 35.0%
TTTCTAACCTCTTCAATTGG+TGG - chr7_2:81824852-81824871 Msa1081930:intron 35.0%
TTCTAACCTCTTCAATTGGT+GGG - chr7_2:81824853-81824872 Msa1081930:intron 35.0%
GTAAAATTCCATCTGTCCAA+TGG + chr7_2:81824891-81824910 None:intergenic 35.0%
TGTGTACTACTGCAGAAATT+CGG - chr7_2:81824971-81824990 Msa1081930:intron 35.0%
CTGTTTATGCACATGATACT+TGG - chr7_2:81825308-81825327 Msa1081930:intron 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr7_2:81825589-81825608 Msa1081930:intron 35.0%
CTTCGGACCGAAAATTATAA+AGG - chr7_2:81825725-81825744 Msa1081930:intron 35.0%
! GGAGGTCCCTTTATAATTTT+CGG + chr7_2:81825735-81825754 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG - chr7_2:81825794-81825813 Msa1081930:intron 35.0%
! TTCAATTTAGGGCATTCACT+TGG - chr7_2:81826173-81826192 Msa1081930:intron 35.0%
! TCAATTTAGGGCATTCACTT+GGG - chr7_2:81826174-81826193 Msa1081930:intron 35.0%
! TGAGCATCTAGCTCAAAAAA+GGG + chr7_2:81826442-81826461 None:intergenic 35.0%
! ATGAGCATCTAGCTCAAAAA+AGG + chr7_2:81826443-81826462 None:intergenic 35.0%
GATCTATAATTGGGAAACAC+GGG + chr7_2:81826557-81826576 None:intergenic 35.0%
CACTTAAAACTACCACTGAA+TGG + chr7_2:81826740-81826759 None:intergenic 35.0%
!!! CATTCAGTGGTAGTTTTAAG+TGG - chr7_2:81826738-81826757 Msa1081930:intron 35.0%
ACTACTGTGATTAAACCTTG+TGG + chr7_2:81826956-81826975 None:intergenic 35.0%
CTAAACTAAACGCATTGAAC+GGG - chr7_2:81827030-81827049 Msa1081930:five_prime_UTR 35.0%
GAGATTGTACCTCATGTTGT+TGG + chr7_2:81823469-81823488 None:intergenic 40.0%
AGATTTGCAGATGCAGAGTT+TGG + chr7_2:81823491-81823510 None:intergenic 40.0%
GCTTATGTGCTTAAATCGGA+AGG + chr7_2:81823550-81823569 None:intergenic 40.0%
GCAGATTGTGATGGCAAATT+TGG - chr7_2:81823797-81823816 Msa1081930:CDS 40.0%
!! TTTACCTTTTCTGGTAGTGC+TGG - chr7_2:81824096-81824115 Msa1081930:intron 40.0%
GAAACTTGAGCTCTTTGACA+AGG - chr7_2:81824143-81824162 Msa1081930:intron 40.0%
!! GGTCGCAAGCATTTTTAGAA+TGG - chr7_2:81824274-81824293 Msa1081930:intron 40.0%
CTGCAATCAAAGAGTCATGA+AGG + chr7_2:81824342-81824361 None:intergenic 40.0%
CTTCATGACTCTTTGATTGC+AGG - chr7_2:81824340-81824359 Msa1081930:intron 40.0%
CATATTCTGTGTAGTGCAGA+AGG - chr7_2:81824391-81824410 Msa1081930:intron 40.0%
TAAATGGGTCGATGAAGATG+AGG - chr7_2:81824487-81824506 Msa1081930:intron 40.0%
! TGTCTCGGTTTTTATTGGTC+AGG - chr7_2:81824594-81824613 Msa1081930:intron 40.0%
TATGCCAACAAATGCCCTTA+AGG - chr7_2:81824719-81824738 Msa1081930:intron 40.0%
TCTAACCTCTTCAATTGGTG+GGG - chr7_2:81824854-81824873 Msa1081930:intron 40.0%
GATATGATCCATTGGACAGA+TGG - chr7_2:81824880-81824899 Msa1081930:intron 40.0%
TGTGTACTGCAGAAATTTGC+TGG - chr7_2:81825194-81825213 Msa1081930:CDS 40.0%
! GTGTACTGCAGAAATTTGCT+GGG - chr7_2:81825195-81825214 Msa1081930:CDS 40.0%
! TTTTTACATTGGCCCAAGTC+GGG - chr7_2:81825795-81825814 Msa1081930:intron 40.0%
CGTTGTTAACATGAGGGTTA+AGG - chr7_2:81825978-81825997 Msa1081930:CDS 40.0%
GAAAGGGGGTTAAAGAAAAG+AGG - chr7_2:81826196-81826215 Msa1081930:intron 40.0%
TAGTTGCTTGACATGGCTAT+TGG - chr7_2:81826388-81826407 Msa1081930:CDS 40.0%
AGTTGCTTGACATGGCTATT+GGG - chr7_2:81826389-81826408 Msa1081930:CDS 40.0%
TGCAAGGTTATTATGTGCTC+GGG + chr7_2:81826662-81826681 None:intergenic 40.0%
CTGCAAGGTTATTATGTGCT+CGG + chr7_2:81826663-81826682 None:intergenic 40.0%
TCTTCAAATCTTGCACTGCA+AGG + chr7_2:81826678-81826697 None:intergenic 40.0%
GTTAAGTCAACACAGCAAAG+AGG + chr7_2:81826777-81826796 None:intergenic 40.0%
!! TGCTGTGTTGACTTAACAGT+AGG - chr7_2:81826780-81826799 Msa1081930:intron 40.0%
GTCTCGATGGAAAAGAATGT+TGG - chr7_2:81826865-81826884 Msa1081930:intron 40.0%
! TGATACTAGCCTGCTTATGC+TGG - chr7_2:81824250-81824269 Msa1081930:intron 45.0%
CAGGAGAGCAAAATCAGTGT+AGG - chr7_2:81824359-81824378 Msa1081930:intron 45.0%
GATGAAGATGAGGCTGAAGA+AGG - chr7_2:81824497-81824516 Msa1081930:intron 45.0%
! CTCGGTTTTTATTGGTCAGG+TGG - chr7_2:81824597-81824616 Msa1081930:intron 45.0%
! GGTTTTTATTGGTCAGGTGG+TGG - chr7_2:81824600-81824619 Msa1081930:intron 45.0%
!! TGATGTTGACTTGGGAGGAA+TGG - chr7_2:81824623-81824642 Msa1081930:intron 45.0%
! CTTGGGAGGAATGGATTTCT+CGG - chr7_2:81824632-81824651 Msa1081930:intron 45.0%
!! AGTGCCTTAAGGGCATTTGT+TGG + chr7_2:81824726-81824745 None:intergenic 45.0%
! TGCCCTTAAGGCACTTGTTA+AGG - chr7_2:81824731-81824750 Msa1081930:intron 45.0%
TGGGGTGTGATATGATCCAT+TGG - chr7_2:81824872-81824891 Msa1081930:intron 45.0%
GTACTACTGCAGAAATTCGG+CGG - chr7_2:81824974-81824993 Msa1081930:intron 45.0%
TACTACTGCAGAAATTCGGC+GGG - chr7_2:81824975-81824994 Msa1081930:intron 45.0%
! ATGGGTGGTGATGATCCAAT+GGG - chr7_2:81824998-81825017 Msa1081930:intron 45.0%
TGATGATCCAATGGGAGGAA+TGG - chr7_2:81825006-81825025 Msa1081930:intron 45.0%
GATGATCCAATGGGAGGAAT+GGG - chr7_2:81825007-81825026 Msa1081930:intron 45.0%
!! ACTGCAGAAATTTGCTGGGA+TGG - chr7_2:81825199-81825218 Msa1081930:CDS 45.0%
!! CTGCAGAAATTTGCTGGGAT+GGG - chr7_2:81825200-81825219 Msa1081930:CDS 45.0%
ATTGACGAGAGTGACGATGA+AGG - chr7_2:81825242-81825261 Msa1081930:intron 45.0%
CGCTGCAACGTAATTCTAAG+AGG + chr7_2:81825542-81825561 None:intergenic 45.0%
! GGTTGTTAGCTCTTGAGTTG+CGG - chr7_2:81825999-81826018 Msa1081930:CDS 45.0%
! TTAGGGCATTCACTTGGGAA+AGG - chr7_2:81826179-81826198 Msa1081930:intron 45.0%
! TAGGGCATTCACTTGGGAAA+GGG - chr7_2:81826180-81826199 Msa1081930:intron 45.0%
!! GATCAAGAAGTGTCAAAGCC+TGG - chr7_2:81826573-81826592 Msa1081930:intron 45.0%
GCAAGGTTATTATGTGCTCG+GGG + chr7_2:81826661-81826680 None:intergenic 45.0%
! TTCCTCTTTGTGCCATTCAG+TGG - chr7_2:81826725-81826744 Msa1081930:intron 45.0%
TACCACTGAATGGCACAAAG+AGG + chr7_2:81826730-81826749 None:intergenic 45.0%
ACACAGCAAAGAGGACACAA+AGG + chr7_2:81826768-81826787 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr7_2:81825757-81825776 None:intergenic 5.0%
TCGTCATCCCGAGGTTAAGT+GGG - chr7_2:81823990-81824009 Msa1081930:intron 50.0%
TCTCTGTGCCCACTTAACCT+CGG + chr7_2:81824001-81824020 None:intergenic 50.0%
GGTCTACATCACAGTGCAGT+TGG - chr7_2:81824029-81824048 Msa1081930:intron 50.0%
AGCACCAGCACTACCAGAAA+AGG + chr7_2:81824103-81824122 None:intergenic 50.0%
!!! TTTTCTGGTAGTGCTGGTGC+TGG - chr7_2:81824102-81824121 Msa1081930:intron 50.0%
! TACTAGCCTGCTTATGCTGG+TGG - chr7_2:81824253-81824272 Msa1081930:intron 50.0%
! AGGTGGTGGTGATGTTGACT+TGG - chr7_2:81824614-81824633 Msa1081930:intron 50.0%
!! GGTGGTGGTGATGTTGACTT+GGG - chr7_2:81824615-81824634 Msa1081930:intron 50.0%
TCACACCCCACCAATTGAAG+AGG + chr7_2:81824862-81824881 None:intergenic 50.0%
! GATGGGTGGTGATGATCCAA+TGG - chr7_2:81824997-81825016 Msa1081930:intron 50.0%
ATGGGAGGAATGGAAGGACT+GGG - chr7_2:81825082-81825101 Msa1081930:intron 50.0%
AATGGAAGGACTGGGAGGAA+TGG - chr7_2:81825090-81825109 Msa1081930:intron 50.0%
!! CAGAAATTTGCTGGGATGGG+TGG - chr7_2:81825203-81825222 Msa1081930:CDS 50.0%
AATTTGTCCGGTCCCGACTT+GGG + chr7_2:81825810-81825829 None:intergenic 50.0%
AAATTTGTCCGGTCCCGACT+TGG + chr7_2:81825811-81825830 None:intergenic 50.0%
! TAGCTCTTGAGTTGCGGAAG+TGG - chr7_2:81826005-81826024 Msa1081930:CDS 50.0%
! AGGGCATTCACTTGGGAAAG+GGG - chr7_2:81826181-81826200 Msa1081930:intron 50.0%
ATGATGCAGTCGTCATCCCG+AGG - chr7_2:81823981-81824000 Msa1081930:intron 55.0%
GTCGTCATCCCGAGGTTAAG+TGG - chr7_2:81823989-81824008 Msa1081930:intron 55.0%
CTCTGTGCCCACTTAACCTC+GGG + chr7_2:81824000-81824019 None:intergenic 55.0%
GTGGGCACAGAGAGTAGACA+AGG - chr7_2:81824008-81824027 Msa1081930:intron 55.0%
TTGCGACCACCAGCATAAGC+AGG + chr7_2:81824262-81824281 None:intergenic 55.0%
GTAGTGCAGAAGGCTGAGAG+TGG - chr7_2:81824401-81824420 Msa1081930:intron 55.0%
TGCAGAAGGCTGAGAGTGGA+TGG - chr7_2:81824405-81824424 Msa1081930:intron 55.0%
AGAAGGCTGAGAGTGGATGG+TGG - chr7_2:81824408-81824427 Msa1081930:intron 55.0%
!! CTGAGAGTGGATGGTGGAAG+AGG - chr7_2:81824414-81824433 Msa1081930:intron 55.0%
AAGAGGTTGCTGCGTGGAGA+AGG - chr7_2:81824431-81824450 Msa1081930:intron 55.0%
!! GGTGGTGATGTTGACTTGGG+AGG - chr7_2:81824618-81824637 Msa1081930:intron 55.0%
ACTGCAGAAATTCGGCGGGA+TGG - chr7_2:81824979-81824998 Msa1081930:intron 55.0%
CTGCAGAAATTCGGCGGGAT+GGG - chr7_2:81824980-81824999 Msa1081930:intron 55.0%
! GGTGGTGATGATCCAATGGG+AGG - chr7_2:81825001-81825020 Msa1081930:intron 55.0%
GATCCAATGGGAGGAATGGG+AGG - chr7_2:81825010-81825029 Msa1081930:intron 55.0%
ATGCCTCCCATTCCTCCCAT+TGG + chr7_2:81825016-81825035 None:intergenic 55.0%
AATGGGAGGAATGGGAGGCA+TGG - chr7_2:81825015-81825034 Msa1081930:intron 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG - chr7_2:81825016-81825035 Msa1081930:intron 55.0%
! ATGGGAGGAATGGGAGGCAT+GGG - chr7_2:81825016-81825035 Msa1081930:intron 55.0%
! AATGGGAGGCATGGGAGGAA+TGG - chr7_2:81825072-81825091 Msa1081930:intron 55.0%
CATGGGAGGAATGGAAGGAC+TGG - chr7_2:81825081-81825100 Msa1081930:intron 55.0%
! TGGGATGGGTGGTGATGCAA+TGG - chr7_2:81825214-81825233 Msa1081930:CDS 55.0%
GGGCATTCACTTGGGAAAGG+GGG - chr7_2:81826182-81826201 Msa1081930:intron 55.0%
! CTTTTCCATCGAGACAGCGC+TGG + chr7_2:81826860-81826879 None:intergenic 55.0%
TGGTGGAAGAGGTTGCTGCG+TGG - chr7_2:81824425-81824444 Msa1081930:intron 60.0%
GTTGCTGCGTGGAGAAGGCA+AGG - chr7_2:81824436-81824455 Msa1081930:intron 60.0%
CAGAAATTCGGCGGGATGGG+TGG - chr7_2:81824983-81825002 Msa1081930:intron 60.0%
! GGCGGCTTGGGAGGAATGAT+GGG - chr7_2:81825037-81825056 Msa1081930:intron 60.0%
! GCGGCTTGGGAGGAATGATG+GGG - chr7_2:81825038-81825057 Msa1081930:intron 60.0%
! CGGCTTGGGAGGAATGATGG+GGG - chr7_2:81825039-81825058 Msa1081930:intron 60.0%
! GGCTTGGGAGGAATGATGGG+GGG - chr7_2:81825040-81825059 Msa1081930:intron 60.0%
! GGAGGAATGATGGGGGGCAT+GGG - chr7_2:81825046-81825065 Msa1081930:intron 60.0%
! ATGGGGGGCATGGGAGGAAT+GGG - chr7_2:81825055-81825074 Msa1081930:intron 60.0%
CATGGGAGGAATGGGAGGCA+TGG - chr7_2:81825063-81825082 Msa1081930:intron 60.0%
! GGAGGCATGGGAGGAATGGA+AGG - chr7_2:81825076-81825095 Msa1081930:intron 60.0%
GGAGGAATGGAAGGACTGGG+AGG - chr7_2:81825085-81825104 Msa1081930:intron 60.0%
ACATTGGCCCAAGTCGGGAC+CGG - chr7_2:81825800-81825819 Msa1081930:intron 60.0%
CCAGCAGCATCTTGCTCTCC+AGG + chr7_2:81826594-81826613 None:intergenic 60.0%
CCTGGAGAGCAAGATGCTGC+TGG - chr7_2:81826591-81826610 Msa1081930:intron 60.0%
TCTAGCCAGCGCTGTCTCGA+TGG - chr7_2:81826852-81826871 Msa1081930:intron 60.0%
! GGAGGAATGGGAGGCATGGG+CGG - chr7_2:81825019-81825038 Msa1081930:intron 65.0%
! AATGGGAGGCATGGGCGGCT+TGG - chr7_2:81825024-81825043 Msa1081930:intron 65.0%
! ATGGGAGGCATGGGCGGCTT+GGG - chr7_2:81825025-81825044 Msa1081930:intron 65.0%
! GGGCGGCTTGGGAGGAATGA+TGG - chr7_2:81825036-81825055 Msa1081930:intron 65.0%
! GGGAGGAATGATGGGGGGCA+TGG - chr7_2:81825045-81825064 Msa1081930:intron 65.0%
! GGAATGATGGGGGGCATGGG+AGG - chr7_2:81825049-81825068 Msa1081930:intron 65.0%
! GATGGGGGGCATGGGAGGAA+TGG - chr7_2:81825054-81825073 Msa1081930:intron 65.0%
! GGAGGAATGGGAGGCATGGG+AGG - chr7_2:81825019-81825038 Msa1081930:intron 65.0%
! GATGCTGCTGGCAAGAGCGC+TGG - chr7_2:81826603-81826622 Msa1081930:intron 65.0%
!! TGCTGGCAAGAGCGCTGGTG+AGG - chr7_2:81826608-81826627 Msa1081930:intron 65.0%
! GGGGGCATGGGAGGAATGGG+AGG - chr7_2:81825058-81825077 Msa1081930:intron 70.0%
! GGAGGCATGGGCGGCTTGGG+AGG - chr7_2:81825028-81825047 Msa1081930:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81823388 81827069 81823388 ID=Msa1081930;Name=Msa1081930
chr7_2 mRNA 81823388 81827069 81823388 ID=Msa1081930-mRNA-1;Parent=Msa1081930;Name=Msa1081930-mRNA-1;_AED=0.36;_eAED=0.36;_QI=86|0.83|0.85|1|1|1|7|398|216
chr7_2 exon 81823388 81823883 81823388 ID=Msa1081930-mRNA-1:exon:21096;Parent=Msa1081930-mRNA-1
chr7_2 exon 81825194 81825251 81825194 ID=Msa1081930-mRNA-1:exon:21095;Parent=Msa1081930-mRNA-1
chr7_2 exon 81825337 81825471 81825337 ID=Msa1081930-mRNA-1:exon:21094;Parent=Msa1081930-mRNA-1
chr7_2 exon 81825831 81825841 81825831 ID=Msa1081930-mRNA-1:exon:21093;Parent=Msa1081930-mRNA-1
chr7_2 exon 81825939 81826095 81825939 ID=Msa1081930-mRNA-1:exon:21092;Parent=Msa1081930-mRNA-1
chr7_2 exon 81826281 81826467 81826281 ID=Msa1081930-mRNA-1:exon:21091;Parent=Msa1081930-mRNA-1
chr7_2 exon 81826979 81827069 81826979 ID=Msa1081930-mRNA-1:exon:21090;Parent=Msa1081930-mRNA-1
chr7_2 five_prime_UTR 81826984 81827069 81826984 ID=Msa1081930-mRNA-1:five_prime_utr;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81826979 81826983 81826979 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81826281 81826467 81826281 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81825939 81826095 81825939 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81825831 81825841 81825831 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81825337 81825471 81825337 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81825194 81825251 81825194 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 CDS 81823786 81823883 81823786 ID=Msa1081930-mRNA-1:cds;Parent=Msa1081930-mRNA-1
chr7_2 three_prime_UTR 81823388 81823785 81823388 ID=Msa1081930-mRNA-1:three_prime_utr;Parent=Msa1081930-mRNA-1
Gene Sequence

>Msa1081930

ATGAGTCGTCATCCCGAGGTTAAGTGGGCACAGAGAGTAGACAAGGTCTACATCACAGTGCAGTTGGCTGATTCCAAAAATTCCAAAGTTGATCTTACTCCAGAAGGTGATTTTACCTTTTCTGGTAGTGCTGGTGCTGGAGACAATCAGTATGAGCTGAAACTTGAGCTCTTTGACAAGGTTAATGTAGAGGAGAGCAAAATCAGTGTAGGAGTGCGAAACATATTCTGTGTAGTGCAGAAGGCTGAGAGTGGATGGTGGAAGAGGTTGCTGCGTGGAGAAGGCAAGGCTCCTCATTATGTGAAAATAGATTGGGATAAATGGGTCGATGAAGATGAGGCTGAAGAAGGTGGTGGTGATAAATTCGGCGGGATGGGTGGTGATGATCCAATGGGAGGAATGGGAGGCATGGGCGGCTTGGGAGGAATGATGGGGGGCATGGGAGGAATGGGAGGCATGGGAGGAATGGAAGGACTGGGAGGAATGGACTTCTCTAAATTTGCTGGGATGGGTGGTGATGCAATGGATGATATTGACGAGAGTGACGATGAAGATCAAGAAGTGTCAAAGCCTGGAGAGCAAGATGCTGCTGGCAAGAGCGCTGGTGAGGCAGCTACAGAGAGTAAAGTAGAAGCTACCCCGAGCACATAA

Protein sequence

>Msa1081930

MSRHPEVKWAQRVDKVYITVQLADSKNSKVDLTPEGDFTFSGSAGAGDNQYELKLELFDKVNVEESKISVGVRNIFCVVQKAESGWWKRLLRGEGKAPHYVKIDWDKWVDEDEAEEGGGDKFGGMGGDDPMGGMGGMGGLGGMMGGMGGMGGMGGMEGLGGMDFSKFAGMGGDAMDDIDESDDEDQEVSKPGEQDAAGKSAGEAATESKVEATPST*