AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756060 MtrunA17_Chr5g0401071 100.000 184 0 0 1 184 1 184 1.50e-136 379
Msa0756060 MtrunA17_Chr5g0434561 82.967 182 31 0 1 182 1 182 7.04e-114 321
Msa0756060 MtrunA17_Chr4g0012371 90.909 165 15 0 20 184 1 165 9.16e-109 308
Msa0756060 MtrunA17_Chr4g0072861 36.813 182 112 2 1 182 1 179 9.97e-36 123
Msa0756060 MtrunA17_Chr7g0270301 33.152 184 120 2 1 184 1 181 4.54e-31 111
Msa0756060 MtrunA17_Chr2g0287721 32.787 183 110 2 2 178 7 182 1.11e-30 110
Msa0756060 MtrunA17_Chr6g0450081 32.609 184 121 2 1 184 1 181 1.52e-30 110
Msa0756060 MtrunA17_Chr1g0194261 32.065 184 122 2 1 184 1 181 3.06e-30 108
Msa0756060 MtrunA17_Chr5g0413451 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0756060 MtrunA17_Chr5g0413441 32.065 184 122 2 1 184 1 181 4.32e-30 108
Msa0756060 MtrunA17_Chr5g0401761 33.735 166 109 1 11 176 9 173 9.52e-30 107
Msa0756060 MtrunA17_Chr4g0039591 29.651 172 120 1 5 176 3 173 4.16e-26 99.0
Msa0756060 MtrunA17_Chr8g0373271 33.735 166 106 3 20 183 17 180 4.26e-26 98.6
Msa0756060 MtrunA17_Chr5g0395641 30.387 181 123 2 5 183 3 182 4.82e-25 95.9
Msa0756060 MtrunA17_Chr1g0188111 35.811 148 82 2 14 155 12 152 8.89e-25 95.1
Msa0756060 MtrunA17_Chr5g0395631 29.801 151 105 1 5 155 3 152 3.04e-24 94.0
Msa0756060 MtrunA17_Chr2g0294701 31.443 194 119 3 1 181 1 193 3.86e-23 91.3
Msa0756060 MtrunA17_Chr7g0271761 36.601 153 95 2 1 152 1 152 8.95e-23 90.1
Msa0756060 MtrunA17_Chr4g0068171 31.073 177 109 2 17 181 18 193 1.12e-21 87.4
Msa0756060 MtrunA17_Chr4g0055651 28.994 169 110 5 20 183 9 172 1.33e-12 63.5
Msa0756060 MtrunA17_Chr7g0250531 30.189 159 101 5 20 173 9 162 1.19e-11 60.8
Msa0756060 MtrunA17_Chr2g0276931 28.402 169 111 5 20 183 10 173 2.20e-11 60.1
Msa0756060 MtrunA17_Chr7g0265001 30.675 163 97 8 24 177 21 176 3.54e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756060 AT3G49870.1 92.935 184 13 0 1 184 1 184 6.45e-127 354
Msa0756060 AT5G67560.1 92.308 182 14 0 1 182 1 182 1.85e-125 351
Msa0756060 AT5G37680.1 80.978 184 35 0 1 184 1 184 6.06e-115 324
Msa0756060 AT3G49870.2 92.727 165 12 0 20 184 1 165 1.85e-112 317
Msa0756060 AT3G49860.1 80.838 167 32 0 18 184 10 176 1.79e-98 282
Msa0756060 AT5G37680.2 78.832 137 29 0 48 184 1 137 6.53e-81 236
Msa0756060 AT2G24765.1 33.708 178 117 1 7 184 5 181 3.41e-33 117
Msa0756060 AT5G52210.1 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0756060 AT5G52210.2 35.882 170 103 1 14 177 12 181 3.51e-33 117
Msa0756060 AT1G10630.1 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0756060 AT1G10630.2 32.609 184 121 2 1 184 1 181 1.60e-30 110
Msa0756060 AT2G47170.2 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0756060 AT2G47170.1 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0756060 AT2G47170.3 32.609 184 121 2 1 184 1 181 3.63e-30 109
Msa0756060 AT1G23490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.2 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.7 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.4 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.3 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.1 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.6 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT1G70490.5 32.065 184 122 2 1 184 1 181 6.85e-30 108
Msa0756060 AT5G14670.2 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0756060 AT5G14670.3 32.065 184 122 2 1 184 1 181 7.80e-30 108
Msa0756060 AT3G62290.3 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0756060 AT3G62290.1 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0756060 AT3G62290.2 32.065 184 122 2 1 184 1 181 9.37e-30 108
Msa0756060 AT5G14670.1 32.240 183 121 2 1 183 1 180 1.80e-29 107
Msa0756060 AT3G03120.1 29.070 172 121 1 5 176 3 173 4.60e-26 99.0
Msa0756060 AT5G17060.2 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0756060 AT5G17060.1 29.070 172 121 1 5 176 3 173 4.75e-26 99.0
Msa0756060 AT2G24765.2 35.484 124 79 1 7 130 5 127 5.23e-25 94.7
Msa0756060 AT2G15310.1 30.061 163 107 3 17 176 15 173 1.02e-24 95.9
Msa0756060 AT2G18390.1 33.133 166 107 3 20 183 17 180 4.24e-24 94.0
Msa0756060 AT3G22950.1 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0756060 AT3G22950.2 33.803 142 93 1 14 155 12 152 8.72e-24 92.8
Msa0756060 AT3G03120.2 32.812 128 85 1 5 132 3 129 1.97e-23 90.5
Msa0756060 AT3G62560.1 36.765 136 85 1 17 152 18 152 1.97e-22 89.7
Msa0756060 AT1G56330.1 31.250 192 118 3 1 179 1 191 2.12e-22 89.7
Msa0756060 AT4G02080.1 36.054 147 92 2 7 152 7 152 4.66e-22 88.6
Msa0756060 AT1G09180.1 31.959 194 118 3 1 181 1 193 1.83e-20 84.3
Msa0756060 AT1G02440.1 25.137 183 118 4 13 181 11 188 3.08e-17 75.9
Msa0756060 AT1G02430.1 24.725 182 118 4 14 181 12 188 2.35e-16 73.6
Msa0756060 AT1G02430.2 26.712 146 102 2 14 154 12 157 1.02e-15 71.2
Msa0756060 AT1G43890.3 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0756060 AT1G43890.1 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0756060 AT1G43890.2 33.939 165 88 9 24 177 18 172 1.55e-11 61.2
Msa0756060 AT1G02440.2 25.352 142 71 2 13 154 11 117 5.49e-11 57.8

Find 62 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTGGTGGGATTAATTTA+AGG 0.222736 5_2:+10073020 None:intergenic
ATTGAGTGGTATCCCTTTAT+TGG 0.240394 5_2:-10073700 Msa0756060:CDS
CTTGATATGCTAAGGTTATC+TGG 0.245165 5_2:+10073756 None:intergenic
TTGTTTCCCAACACCAATAA+AGG 0.252942 5_2:+10073687 None:intergenic
GAGATGGAGTTATCTCTTAT+AGG 0.305630 5_2:-10077837 Msa0756060:CDS
ACAATAAAGTTATGGGATCT+TGG 0.325152 5_2:-10074730 Msa0756060:CDS
AGTTTCTTAGCTCTTTGATT+TGG 0.349213 5_2:+10073355 None:intergenic
CAATAAAGTTATGGGATCTT+GGG 0.353435 5_2:-10074729 Msa0756060:CDS
AATGATTAGTCTTGTATGAT+TGG 0.354105 5_2:-10073214 Msa0756060:three_prime_UTR
AGATGGAGTTATCTCTTATA+GGG 0.367558 5_2:-10077836 Msa0756060:CDS
CCATCTCCTGCTTGAAGAAA+AGG 0.375686 5_2:+10077853 None:intergenic
GCTGGTCATTTGAAAGAAAC+AGG 0.376587 5_2:+10073052 None:intergenic
TTGTATGATTGGGAATTAAA+CGG 0.384038 5_2:-10073203 Msa0756060:three_prime_UTR
GCAATGTTACAATAAAGTTA+TGG 0.384617 5_2:-10074738 Msa0756060:CDS
TGCATGTCTAACTCTGAGAT+TGG 0.387642 5_2:-10073268 Msa0756060:three_prime_UTR
CAATGTTACAATAAAGTTAT+GGG 0.399340 5_2:-10074737 Msa0756060:CDS
AATTTAAGGCCACACATTGC+TGG 0.404845 5_2:+10073034 None:intergenic
GAGTGCAAAGCGAGGGAAGA+AGG 0.427399 5_2:-10078695 Msa0756060:five_prime_UTR
TGTATGATTGGGAATTAAAC+GGG 0.430307 5_2:-10073202 Msa0756060:three_prime_UTR
GGTATCCCTTTATTGGTGTT+GGG 0.432316 5_2:-10073693 Msa0756060:CDS
TGTTTCCCAACACCAATAAA+GGG 0.437850 5_2:+10073688 None:intergenic
ATGATTAGTCTTGTATGATT+GGG 0.442414 5_2:-10073213 Msa0756060:three_prime_UTR
TTTATCCTTTCCCTTTCCTC+AGG 0.449046 5_2:-10073245 Msa0756060:three_prime_UTR
TGGTATCCCTTTATTGGTGT+TGG 0.453471 5_2:-10073694 Msa0756060:CDS
CTTATAGGGCTTCAGAATGC+TGG 0.462107 5_2:-10077822 Msa0756060:CDS
TTACTAAGCACCTGAGGAAA+GGG 0.471210 5_2:+10073235 None:intergenic
GTTCACTTCTTGATATGCTA+AGG 0.480587 5_2:+10073748 None:intergenic
TGCAGGTGGGATTCAATATG+AGG 0.498889 5_2:-10074774 Msa0756060:intron
CAAAGCGAGGGAAGAAGGAT+AGG 0.507495 5_2:-10078690 Msa0756060:five_prime_UTR
ACGGGATAAAATACATGTCA+AGG 0.525525 5_2:-10073184 Msa0756060:three_prime_UTR
TTACAGCAACAACATTTACA+AGG 0.527139 5_2:+10077790 None:intergenic
ACATCGACTCTGTTATTGAC+TGG 0.533756 5_2:-10073391 Msa0756060:CDS
AATATGAGGAAAGTAACAAA+AGG 0.537108 5_2:-10074760 Msa0756060:CDS
GGAAACAAGATTGACAAGGC+AGG 0.537382 5_2:-10073672 Msa0756060:CDS
ATTACTAAGCACCTGAGGAA+AGG 0.544169 5_2:+10073234 None:intergenic
CTCAATTCTGGATTTAGTAG+TGG 0.544172 5_2:-10073295 Msa0756060:three_prime_UTR
GAAACAAGATTGACAAGGCA+GGG 0.547885 5_2:-10073671 Msa0756060:CDS
CATGTCCTCGCTGTATCCAC+CGG 0.552693 5_2:+10077676 None:intergenic
AAAGGGATACCACTCAATGA+TGG 0.564623 5_2:+10073705 None:intergenic
AACCTAGGTTCCGTAGCATG+TGG 0.564867 5_2:-10074702 Msa0756060:CDS
AATAAAGTTATGGGATCTTG+GGG 0.566711 5_2:-10074728 Msa0756060:CDS
GCGAGGGAAGAAGGATAGGA+AGG 0.567798 5_2:-10078686 Msa0756060:five_prime_UTR
CGGGATAAAATACATGTCAA+GGG 0.576180 5_2:-10073183 Msa0756060:three_prime_UTR
GTCAATAACAGAGTCGATGT+TGG 0.577317 5_2:+10073394 None:intergenic
AGTAACGTTCCCACATGCTA+CGG 0.585403 5_2:+10074692 None:intergenic
GTTTGTTTCTTACACAATAG+CGG 0.594683 5_2:+10074657 None:intergenic
TTCAAATGACCAGCAATGTG+TGG 0.602029 5_2:-10073043 Msa0756060:three_prime_UTR
TACAGCAACAACATTTACAA+GGG 0.602506 5_2:+10077791 None:intergenic
CTGAGCAAGCCATCATTGAG+TGG 0.608208 5_2:-10073714 Msa0756060:CDS
TAAAGTTATGGGATCTTGGG+GGG 0.613674 5_2:-10074726 Msa0756060:CDS
ACCTAGGTTCCGTAGCATGT+GGG 0.619889 5_2:-10074701 Msa0756060:CDS
CGATAATAGAGTGCAAAGCG+AGG 0.626433 5_2:-10078703 Msa0756060:five_prime_UTR
AAACAAGATTGACAAGGCAG+GGG 0.626437 5_2:-10073670 Msa0756060:CDS
ACGCGTATCTTACATTTGGT+CGG 0.630887 5_2:+10073626 None:intergenic
AAGCACCTGAGGAAAGGGAA+AGG 0.631811 5_2:+10073240 None:intergenic
TCCCACATGCTACGGAACCT+AGG 0.638908 5_2:+10074700 None:intergenic
GTGGGAACGTTACTGTCGTG+CGG 0.647989 5_2:-10074683 Msa0756060:CDS
GATAATAGAGTGCAAAGCGA+GGG 0.655867 5_2:-10078702 Msa0756060:five_prime_UTR
ATAAAGTTATGGGATCTTGG+GGG 0.665703 5_2:-10074727 Msa0756060:CDS
TAATCATTACTAAGCACCTG+AGG 0.669322 5_2:+10073229 None:intergenic
GTTGGGAAACAAGATTGACA+AGG 0.714570 5_2:-10073676 Msa0756060:CDS
TTAGACCGGTGGATACAGCG+AGG 0.780785 5_2:-10077681 Msa0756060:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTATTTTTTGTTGAAT+AGG - chr5_2:10073295-10073314 Msa0756060:three_prime_UTR 15.0%
!!! TGAATTTGTTTGTAATAATT+TGG - chr5_2:10073338-10073357 Msa0756060:three_prime_UTR 15.0%
!!! CTAATTTTTATTATTCACTT+GGG - chr5_2:10076887-10076906 Msa0756060:intron 15.0%
!! AAGAATAATATTAATGCTTT+AGG + chr5_2:10077332-10077351 None:intergenic 15.0%
!!! TTGTTTATTTTAGTTTTTGT+TGG - chr5_2:10077370-10077389 Msa0756060:intron 15.0%
!!! TGTTTATTTTAGTTTTTGTT+GGG - chr5_2:10077371-10077390 Msa0756060:intron 15.0%
!! AAAAAAGAATACAAAATTGA+AGG + chr5_2:10078247-10078266 None:intergenic 15.0%
!!! TAAATTTTATTGTGCATTAT+CGG - chr5_2:10078608-10078627 Msa0756060:five_prime_UTR 15.0%
!!! TTTAGTTTGAGAAAAAACAA+TGG - chr5_2:10073213-10073232 Msa0756060:three_prime_UTR 20.0%
!!! TTAGTTTGAGAAAAAACAAT+GGG - chr5_2:10073214-10073233 Msa0756060:three_prime_UTR 20.0%
!! TGATTTACAAATCATATCAA+AGG + chr5_2:10073387-10073406 None:intergenic 20.0%
!!! GATATGATTTGTAAATCAAT+TGG - chr5_2:10073389-10073408 Msa0756060:CDS 20.0%
!!! AAAATGATTTTTATCCCTAA+GGG + chr5_2:10073690-10073709 None:intergenic 20.0%
!!! AAAAATGATTTTTATCCCTA+AGG + chr5_2:10073691-10073710 None:intergenic 20.0%
!!! TATTTATATTGCTTTTAGAC+CGG - chr5_2:10074063-10074082 Msa0756060:intron 20.0%
!!! TAGAAAAAAGTTTGTTATTG+TGG - chr5_2:10074297-10074316 Msa0756060:intron 20.0%
!! TAATAAGCTATACGATAAAT+AGG - chr5_2:10074378-10074397 Msa0756060:intron 20.0%
!! TCAGTTATAACAATAGAAAT+AGG + chr5_2:10075558-10075577 None:intergenic 20.0%
!! ATTTCTATTGTTATAACTGA+CGG - chr5_2:10075558-10075577 Msa0756060:intron 20.0%
!!! TTTGAAATTTTTTCCTTACT+TGG - chr5_2:10075729-10075748 Msa0756060:intron 20.0%
!!! TTGAAATTTTTTCCTTACTT+GGG - chr5_2:10075730-10075749 Msa0756060:intron 20.0%
!! TTCAATTATTTGATACAGAT+GGG - chr5_2:10076419-10076438 Msa0756060:intron 20.0%
!! TAGTTAATTGTTATCAATCA+CGG + chr5_2:10076616-10076635 None:intergenic 20.0%
!!! TTTCCTGTATTTTTTTTAAC+GGG + chr5_2:10076759-10076778 None:intergenic 20.0%
!!! CTTTCCTGTATTTTTTTTAA+CGG + chr5_2:10076760-10076779 None:intergenic 20.0%
!! CCAAGTGAATAATAAAAATT+AGG + chr5_2:10076889-10076908 None:intergenic 20.0%
!!! CCTAATTTTTATTATTCACT+TGG - chr5_2:10076886-10076905 Msa0756060:intron 20.0%
!! CAATGTTACAATAAAGTTAT+GGG - chr5_2:10077021-10077040 Msa0756060:intron 20.0%
!!! GTTTATTTTAGTTTTTGTTG+GGG - chr5_2:10077372-10077391 Msa0756060:intron 20.0%
!! TAAATAAACAAGGTAAAATC+TGG + chr5_2:10077409-10077428 None:intergenic 20.0%
!! AAAAAGAATAACTCAACAAT+TGG + chr5_2:10077435-10077454 None:intergenic 20.0%
!!! ATTTTATTCATTAACTTCCT+AGG + chr5_2:10078202-10078221 None:intergenic 20.0%
!!! TGTATTCTTTTTTATCTGTT+TGG - chr5_2:10078254-10078273 Msa0756060:intron 20.0%
!!! ATTTTTTGTTGAATAGGTTC+TGG - chr5_2:10073301-10073320 Msa0756060:three_prime_UTR 25.0%
! AACCATTTCTATAATCAAAG+AGG - chr5_2:10073516-10073535 Msa0756060:intron 25.0%
! ACCATTTCTATAATCAAAGA+GGG - chr5_2:10073517-10073536 Msa0756060:intron 25.0%
! AATTAAGTGCTTTGTGAAAA+GGG + chr5_2:10073754-10073773 None:intergenic 25.0%
! AAATTAAGTGCTTTGTGAAA+AGG + chr5_2:10073755-10073774 None:intergenic 25.0%
!! AAGCACTTAATTTCAGTTTT+AGG - chr5_2:10073762-10073781 Msa0756060:CDS 25.0%
! CTAACACAAACAAATAGAAT+AGG + chr5_2:10074159-10074178 None:intergenic 25.0%
! ATGATTAGAAGGATTCATTA+GGG - chr5_2:10074335-10074354 Msa0756060:intron 25.0%
! TATACGATAAATAGGAATCA+GGG - chr5_2:10074386-10074405 Msa0756060:intron 25.0%
! GAGTAATAAAAATTGGATGA+AGG + chr5_2:10074547-10074566 None:intergenic 25.0%
! CACATTAGAAGGAAAAAATT+GGG - chr5_2:10074765-10074784 Msa0756060:CDS 25.0%
! TGGTAGATTGACTATTAAAT+AGG - chr5_2:10074960-10074979 Msa0756060:intron 25.0%
! GGTAGATTGACTATTAAATA+GGG - chr5_2:10074961-10074980 Msa0756060:intron 25.0%
! TTATATCCAATATCACTGAT+TGG - chr5_2:10075018-10075037 Msa0756060:intron 25.0%
! AAACTGATGTGTTCAAAAAT+GGG + chr5_2:10075200-10075219 None:intergenic 25.0%
! TAAACTGATGTGTTCAAAAA+TGG + chr5_2:10075201-10075220 None:intergenic 25.0%
!! TTTTGAACACATCAGTTTAT+AGG - chr5_2:10075202-10075221 Msa0756060:intron 25.0%
!! AGAGATTTTCAATACATACA+GGG - chr5_2:10075618-10075637 Msa0756060:intron 25.0%
!! CTGTATAATACCAATTTTCA+CGG - chr5_2:10075761-10075780 Msa0756060:intron 25.0%
!! TGTATAATACCAATTTTCAC+GGG - chr5_2:10075762-10075781 Msa0756060:intron 25.0%
! ACATCAACTTAAACATCATT+TGG - chr5_2:10075880-10075899 Msa0756060:intron 25.0%
! TAACATCATGCTACATATTT+GGG + chr5_2:10076024-10076043 None:intergenic 25.0%
! ATAACATCATGCTACATATT+TGG + chr5_2:10076025-10076044 None:intergenic 25.0%
! AAATATGTAGCATGATGTTA+TGG - chr5_2:10076024-10076043 Msa0756060:intron 25.0%
! AATATGTAGCATGATGTTAT+GGG - chr5_2:10076025-10076044 Msa0756060:intron 25.0%
!! ATTTGTTTGATAACCTGATA+AGG + chr5_2:10076051-10076070 None:intergenic 25.0%
! TATCAGGTTATCAAACAAAT+AGG - chr5_2:10076051-10076070 Msa0756060:intron 25.0%
! CAGATAAAATACATGCAATA+AGG + chr5_2:10076122-10076141 None:intergenic 25.0%
!! TATTGCATGTATTTTATCTG+AGG - chr5_2:10076122-10076141 Msa0756060:intron 25.0%
! GTTCAATTATTTGATACAGA+TGG - chr5_2:10076418-10076437 Msa0756060:intron 25.0%
! TTGTTCCACAATATGATATT+TGG - chr5_2:10076522-10076541 Msa0756060:intron 25.0%
! TAGTACCAAATATCATATTG+TGG + chr5_2:10076530-10076549 None:intergenic 25.0%
! TTGGTACTATTGTCAAATAA+TGG - chr5_2:10076541-10076560 Msa0756060:intron 25.0%
! TGGTACTATTGTCAAATAAT+GGG - chr5_2:10076542-10076561 Msa0756060:intron 25.0%
! AAGTCAATATGTACTTCAAA+GGG + chr5_2:10076811-10076830 None:intergenic 25.0%
! AAAGTCAATATGTACTTCAA+AGG + chr5_2:10076812-10076831 None:intergenic 25.0%
! AATATGAGGAAAGTAACAAA+AGG - chr5_2:10076998-10077017 Msa0756060:intron 25.0%
! GCAATGTTACAATAAAGTTA+TGG - chr5_2:10077020-10077039 Msa0756060:intron 25.0%
! CAATTGGTTGTAAATAAACA+AGG + chr5_2:10077419-10077438 None:intergenic 25.0%
! TTTCAACATATAAAAACACC+AGG + chr5_2:10077528-10077547 None:intergenic 25.0%
!!! ACCTTTTTTCTGTTGAAAAT+TGG - chr5_2:10077798-10077817 Msa0756060:CDS 25.0%
!!! CCTTTTTTCTGTTGAAAATT+GGG - chr5_2:10077799-10077818 Msa0756060:CDS 25.0%
! ACAAATACAATAGATCTAAG+AGG + chr5_2:10077845-10077864 None:intergenic 25.0%
!! GATCTATTGTATTTGTCTTT+TGG - chr5_2:10077849-10077868 Msa0756060:CDS 25.0%
! AAAGAATACAAAATTGAAGG+AGG + chr5_2:10078244-10078263 None:intergenic 25.0%
!! TGAACTTTGATGTAATTTTG+TGG - chr5_2:10078437-10078456 Msa0756060:intron 25.0%
!! GAACTTTGATGTAATTTTGT+GGG - chr5_2:10078438-10078457 Msa0756060:intron 25.0%
!! AACTTTGATGTAATTTTGTG+GGG - chr5_2:10078439-10078458 Msa0756060:intron 25.0%
!!! AATGATTAGTCTTGTATGAT+TGG - chr5_2:10078544-10078563 Msa0756060:exon 25.0%
!!! ATGATTAGTCTTGTATGATT+GGG - chr5_2:10078545-10078564 Msa0756060:exon 25.0%
! TTGTATGATTGGGAATTAAA+CGG - chr5_2:10078555-10078574 Msa0756060:five_prime_UTR 25.0%
AGAAAAAACAATGGGATTGT+GGG - chr5_2:10073222-10073241 Msa0756060:three_prime_UTR 30.0%
CACTGCTAATATCAAAGTTT+CGG + chr5_2:10073431-10073450 None:intergenic 30.0%
TTGGGTAATCAGCTTAATTA+AGG - chr5_2:10073470-10073489 Msa0756060:intron 30.0%
TGGGTAATCAGCTTAATTAA+GGG - chr5_2:10073471-10073490 Msa0756060:intron 30.0%
TCCCTCTTTGATTATAGAAA+TGG + chr5_2:10073521-10073540 None:intergenic 30.0%
! CAATCAAAGGCTTTTTATGA+AGG + chr5_2:10073717-10073736 None:intergenic 30.0%
AAGCAGATTAATGCAATCAA+AGG + chr5_2:10073730-10073749 None:intergenic 30.0%
!!! TTTCAGTTTTAGGTTGTCTT+TGG - chr5_2:10073772-10073791 Msa0756060:CDS 30.0%
TCAAAATGCATGAGCTTATT+AGG - chr5_2:10073859-10073878 Msa0756060:intron 30.0%
AGATGGAGTTATCTCTTATA+GGG - chr5_2:10073922-10073941 Msa0756060:intron 30.0%
TACAGCAACAACATTTACAA+GGG + chr5_2:10073970-10073989 None:intergenic 30.0%
TTACAGCAACAACATTTACA+AGG + chr5_2:10073971-10073990 None:intergenic 30.0%
! TTTGTTTGTGTTAGTCTGTT+AGG - chr5_2:10074165-10074184 Msa0756060:intron 30.0%
! TTGTTTGTGTTAGTCTGTTA+GGG - chr5_2:10074166-10074185 Msa0756060:intron 30.0%
CAGATAGTTAATACATACGT+GGG - chr5_2:10074268-10074287 Msa0756060:intron 30.0%
GATGATTAGAAGGATTCATT+AGG - chr5_2:10074334-10074353 Msa0756060:intron 30.0%
CTATACGATAAATAGGAATC+AGG - chr5_2:10074385-10074404 Msa0756060:intron 30.0%
CTCTTCAATGAATAATGCAA+AGG - chr5_2:10074500-10074519 Msa0756060:intron 30.0%
! TCCAATTTTTATTACTCCCT+CGG - chr5_2:10074550-10074569 Msa0756060:intron 30.0%
GCACATTAGAAGGAAAAAAT+TGG - chr5_2:10074764-10074783 Msa0756060:CDS 30.0%
TTGACTATTAAATAGGGAAG+AGG - chr5_2:10074967-10074986 Msa0756060:intron 30.0%
ATTAAATAGGGAAGAGGTTA+AGG - chr5_2:10074973-10074992 Msa0756060:intron 30.0%
TTGGATATAAGATCAAGAGA+TGG + chr5_2:10075008-10075027 None:intergenic 30.0%
! TATAGCGGAAATGAGAATTA+GGG + chr5_2:10075105-10075124 None:intergenic 30.0%
TGTGTTCAAAAATGGGATTT+GGG + chr5_2:10075193-10075212 None:intergenic 30.0%
ATGTGTTCAAAAATGGGATT+TGG + chr5_2:10075194-10075213 None:intergenic 30.0%
CAGTTTATAGGAACTACAAA+TGG - chr5_2:10075214-10075233 Msa0756060:intron 30.0%
TTATAGGAACTACAAATGGT+TGG - chr5_2:10075218-10075237 Msa0756060:intron 30.0%
!! TTGCAAATAGCTTTAGGAAT+AGG + chr5_2:10075360-10075379 None:intergenic 30.0%
AGATCTTTGCAAATAGCTTT+AGG + chr5_2:10075366-10075385 None:intergenic 30.0%
TATTTGCAAAGATCTCAGTT+TGG - chr5_2:10075371-10075390 Msa0756060:intron 30.0%
TGCATTAAAATGCTCCTATT+TGG - chr5_2:10075480-10075499 Msa0756060:intron 30.0%
! TTTTTGCGTGAGAATTAGTT+AGG - chr5_2:10075521-10075540 Msa0756060:intron 30.0%
TGAGAATTAGTTAGGTTACT+TGG - chr5_2:10075529-10075548 Msa0756060:intron 30.0%
GAGAATTAGTTAGGTTACTT+GGG - chr5_2:10075530-10075549 Msa0756060:intron 30.0%
! GAGAGATTTTCAATACATAC+AGG - chr5_2:10075617-10075636 Msa0756060:intron 30.0%
GACTTGATATACAGAAATGA+AGG - chr5_2:10075854-10075873 Msa0756060:intron 30.0%
AACTTAAACATCATTTGGCA+GGG - chr5_2:10075885-10075904 Msa0756060:intron 30.0%
ATTGTCCATTGTGTATACAA+GGG - chr5_2:10075972-10075991 Msa0756060:intron 30.0%
AACATCATGCTACATATTTG+GGG + chr5_2:10076023-10076042 None:intergenic 30.0%
AGATTTGTCAGTATAGATGA+TGG - chr5_2:10076230-10076249 Msa0756060:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_2:10076255-10076274 Msa0756060:intron 30.0%
! GATTATAATAGACCAGGTTT+TGG - chr5_2:10076261-10076280 Msa0756060:intron 30.0%
TGATCTGATTATAATAGACC+AGG - chr5_2:10076255-10076274 Msa0756060:intron 30.0%
GATTATAATAGACCAGGTTT+CGG - chr5_2:10076261-10076280 Msa0756060:intron 30.0%
AATTATTTGATACAGATGGG+AGG - chr5_2:10076422-10076441 Msa0756060:intron 30.0%
GGTAGTTCAGTGTTAAATAA+CGG - chr5_2:10076448-10076467 Msa0756060:intron 30.0%
TCAGTGTTAAATAACGGTTA+TGG - chr5_2:10076454-10076473 Msa0756060:intron 30.0%
!!! CAGTTTTTTTAGCAGTTAGA+AGG - chr5_2:10076642-10076661 Msa0756060:intron 30.0%
AAGATGGTACTGTATAGATT+AGG - chr5_2:10076702-10076721 Msa0756060:intron 30.0%
GTATAGATTAGGATCTAAGT+AGG - chr5_2:10076713-10076732 Msa0756060:intron 30.0%
GATCCCGTTAAAAAAAATAC+AGG - chr5_2:10076753-10076772 Msa0756060:intron 30.0%
! ATGAAGTTTTCTATCTCTCA+AGG - chr5_2:10076928-10076947 Msa0756060:intron 30.0%
! TGAAGTTTTCTATCTCTCAA+GGG - chr5_2:10076929-10076948 Msa0756060:intron 30.0%
ACAATAAAGTTATGGGATCT+TGG - chr5_2:10077028-10077047 Msa0756060:intron 30.0%
CAATAAAGTTATGGGATCTT+GGG - chr5_2:10077029-10077048 Msa0756060:intron 30.0%
AATAAAGTTATGGGATCTTG+GGG - chr5_2:10077030-10077049 Msa0756060:intron 30.0%
! GTTTGTTTCTTACACAATAG+CGG + chr5_2:10077104-10077123 None:intergenic 30.0%
GAAACAAACTTCTTATCTTC+TGG - chr5_2:10077115-10077134 Msa0756060:intron 30.0%
TAGTTGAGCATAACTATGTT+CGG + chr5_2:10077469-10077488 None:intergenic 30.0%
ACATATAAAAACACCAGGAA+AGG + chr5_2:10077523-10077542 None:intergenic 30.0%
!!! TTCTCTACGCTTTTTCATAT+AGG + chr5_2:10077560-10077579 None:intergenic 30.0%
!! TTAACGAAATCGATTTGTAC+AGG + chr5_2:10077588-10077607 None:intergenic 30.0%
! CAATTCTGAAAAGTCTTGAT+TGG - chr5_2:10077749-10077768 Msa0756060:intron 30.0%
! CCCAATTTTCAACAGAAAAA+AGG + chr5_2:10077802-10077821 None:intergenic 30.0%
!!! ATGCATTTTTTCTCTTTAGC+TGG - chr5_2:10077899-10077918 Msa0756060:intron 30.0%
TTATCTGAATTCGTGAAACT+TGG - chr5_2:10077928-10077947 Msa0756060:intron 30.0%
TCTTAACAGCCAGAATAAAA+GGG + chr5_2:10078158-10078177 None:intergenic 30.0%
! AGTTTCTTAGCTCTTTGATT+TGG + chr5_2:10078406-10078425 None:intergenic 30.0%
TGTATGATTGGGAATTAAAC+GGG - chr5_2:10078556-10078575 Msa0756060:five_prime_UTR 30.0%
! TTCTCTCTTTTTCTCTCTCT+CGG - chr5_2:10073113-10073132 Msa0756060:three_prime_UTR 35.0%
GAGAAAAAACAATGGGATTG+TGG - chr5_2:10073221-10073240 Msa0756060:three_prime_UTR 35.0%
CTATAATCAAAGAGGGAATG+CGG - chr5_2:10073524-10073543 Msa0756060:intron 35.0%
CGGTCAAACTGTATTTATGT+AGG - chr5_2:10073544-10073563 Msa0756060:intron 35.0%
GAGATGGAGTTATCTCTTAT+AGG - chr5_2:10073921-10073940 Msa0756060:intron 35.0%
!! TTATATTGCTTTTAGACCGG+TGG - chr5_2:10074066-10074085 Msa0756060:intron 35.0%
! TCTGTTAGGGTATTAGCAAA+TGG - chr5_2:10074179-10074198 Msa0756060:intron 35.0%
! CTGTTAGGGTATTAGCAAAT+GGG - chr5_2:10074180-10074199 Msa0756060:intron 35.0%
! TGTTAGGGTATTAGCAAATG+GGG - chr5_2:10074181-10074200 Msa0756060:intron 35.0%
TATACGAGAAGTAAGAGTAG+TGG - chr5_2:10074236-10074255 Msa0756060:intron 35.0%
CCACGTATGTATTAACTATC+TGG + chr5_2:10074270-10074289 None:intergenic 35.0%
CCAGATAGTTAATACATACG+TGG - chr5_2:10074267-10074286 Msa0756060:intron 35.0%
!! AGTTTGTTATTGTGGTAGTC+AGG - chr5_2:10074305-10074324 Msa0756060:intron 35.0%
TGATGCTAATATTCTACCGT+TGG + chr5_2:10074733-10074752 None:intergenic 35.0%
TATTAGCATCAAGCAGCTTA+TGG - chr5_2:10074742-10074761 Msa0756060:CDS 35.0%
TTAGAAGGAAAAAATTGGGC+TGG - chr5_2:10074769-10074788 Msa0756060:CDS 35.0%
GAAGATCATGATGAAACCAT+CGG - chr5_2:10074797-10074816 Msa0756060:intron 35.0%
!!! CTAGGTTTTGGCTAAAAAAG+TGG - chr5_2:10074916-10074935 Msa0756060:intron 35.0%
AGTCAACCAATCAGTGATAT+TGG + chr5_2:10075027-10075046 None:intergenic 35.0%
TAAGACCTTGAGAAAAACTC+TGG - chr5_2:10075063-10075082 Msa0756060:intron 35.0%
! GTATAGCGGAAATGAGAATT+AGG + chr5_2:10075106-10075125 None:intergenic 35.0%
TTTCCGCTATACTAATGAGT+AGG - chr5_2:10075114-10075133 Msa0756060:intron 35.0%
TTCCGCTATACTAATGAGTA+GGG - chr5_2:10075115-10075134 Msa0756060:intron 35.0%
GCTAGCAGAGTAATTAGTAA+TGG + chr5_2:10075277-10075296 None:intergenic 35.0%
! ACTTAATGCACTGACAAGTA+TGG + chr5_2:10075302-10075321 None:intergenic 35.0%
!! ATAGCTTTAGGAATAGGAAG+AGG + chr5_2:10075354-10075373 None:intergenic 35.0%
TCTCAGTTTGGACTTCATTA+AGG - chr5_2:10075383-10075402 Msa0756060:intron 35.0%
CAACTTAAACATCATTTGGC+AGG - chr5_2:10075884-10075903 Msa0756060:intron 35.0%
CTTGTATACACAATGGACAA+TGG + chr5_2:10075973-10075992 None:intergenic 35.0%
CATTGTCCATTGTGTATACA+AGG - chr5_2:10075971-10075990 Msa0756060:intron 35.0%
! GCATGTATTTTATCTGAGGA+AGG - chr5_2:10076126-10076145 Msa0756060:intron 35.0%
! ATTTTATCTGAGGAAGGTCT+TGG - chr5_2:10076132-10076151 Msa0756060:intron 35.0%
! TTTTATCTGAGGAAGGTCTT+GGG - chr5_2:10076133-10076152 Msa0756060:intron 35.0%
TGTTATCTACTGACATCAAG+AGG - chr5_2:10076176-10076195 Msa0756060:intron 35.0%
! TTTCGGTGTAGATATTCTAC+AGG - chr5_2:10076309-10076328 Msa0756060:intron 35.0%
! TTCGGTGTAGATATTCTACA+GGG - chr5_2:10076310-10076329 Msa0756060:intron 35.0%
!! TTTTGAAGGTGCATACAAGA+AGG - chr5_2:10076377-10076396 Msa0756060:intron 35.0%
GTGTTAAATAACGGTTATGG+CGG - chr5_2:10076457-10076476 Msa0756060:intron 35.0%
GCTATAGCAATGTATCATAG+CGG - chr5_2:10076481-10076500 Msa0756060:intron 35.0%
ACAAAGTCATAGTTGCAAGA+TGG - chr5_2:10076686-10076705 Msa0756060:intron 35.0%
! AGTAGTTCTGCTGTGTAATA+AGG - chr5_2:10076778-10076797 Msa0756060:intron 35.0%
ATCTGTTCTTATCTGATTGC+AGG - chr5_2:10076967-10076986 Msa0756060:intron 35.0%
ATAAAGTTATGGGATCTTGG+GGG - chr5_2:10077031-10077050 Msa0756060:intron 35.0%
! AAGGTAAAATCTGGTAGTGA+TGG + chr5_2:10077400-10077419 None:intergenic 35.0%
AGTTGAGCATAACTATGTTC+GGG + chr5_2:10077468-10077487 None:intergenic 35.0%
ACATAGTTATGCTCAACTAC+TGG - chr5_2:10077470-10077489 Msa0756060:intron 35.0%
!!! TGCTCAACTACTGGTTTTTT+AGG - chr5_2:10077479-10077498 Msa0756060:intron 35.0%
CTTGATTATCTCACAACATG+TGG - chr5_2:10077678-10077697 Msa0756060:CDS 35.0%
! CAAGACTTTTCAGAATTGAG+CGG + chr5_2:10077747-10077766 None:intergenic 35.0%
CTTGATATGCTAAGGTTATC+TGG + chr5_2:10078005-10078024 None:intergenic 35.0%
ATTGAGTGGTATCCCTTTAT+TGG - chr5_2:10078058-10078077 Msa0756060:intron 35.0%
TGTTTCCCAACACCAATAAA+GGG + chr5_2:10078073-10078092 None:intergenic 35.0%
TTGTTTCCCAACACCAATAA+AGG + chr5_2:10078074-10078093 None:intergenic 35.0%
CTCTTAACAGCCAGAATAAA+AGG + chr5_2:10078159-10078178 None:intergenic 35.0%
!! AGAGCAATAACGGATTAAAG+TGG - chr5_2:10078175-10078194 Msa0756060:intron 35.0%
CTCAATTCTGGATTTAGTAG+TGG - chr5_2:10078463-10078482 Msa0756060:intron 35.0%
TAATCATTACTAAGCACCTG+AGG + chr5_2:10078532-10078551 None:intergenic 35.0%
ACGGGATAAAATACATGTCA+AGG - chr5_2:10078574-10078593 Msa0756060:five_prime_UTR 35.0%
CGGGATAAAATACATGTCAA+GGG - chr5_2:10078575-10078594 Msa0756060:five_prime_UTR 35.0%
! CACAGAATTTCTTTTGTGAG+AGG - chr5_2:10078653-10078672 Msa0756060:five_prime_UTR 35.0%
! TCTTTTGTGAGAGGAATTGA+TGG - chr5_2:10078662-10078681 Msa0756060:five_prime_UTR 35.0%
GATAATAGAGTGCAAAGCGA+GGG - chr5_2:10073056-10073075 Msa0756060:three_prime_UTR 40.0%
!! ATTAGCAGTGTCGACGTATT+AGG - chr5_2:10073441-10073460 Msa0756060:CDS 40.0%
!! TTAGCAGTGTCGACGTATTA+GGG - chr5_2:10073442-10073461 Msa0756060:CDS 40.0%
GCACTTGGAAGAGCTTATTT+AGG + chr5_2:10073666-10073685 None:intergenic 40.0%
AAAGTGATCCACTTAGCACA+GGG + chr5_2:10073837-10073856 None:intergenic 40.0%
CGTGAAGCATAACTTACTGT+AGG + chr5_2:10074111-10074130 None:intergenic 40.0%
! GAGAAGTAAGAGTAGTGGAA+AGG - chr5_2:10074241-10074260 Msa0756060:intron 40.0%
TATTGTGGTAGTCAGGACTT+AGG - chr5_2:10074312-10074331 Msa0756060:intron 40.0%
CAGGACTTAGGATGATTAGA+AGG - chr5_2:10074324-10074343 Msa0756060:intron 40.0%
ACGATAAATAGGAATCAGGG+AGG - chr5_2:10074389-10074408 Msa0756060:intron 40.0%
AGTTCAAGACAACCAACTGA+GGG + chr5_2:10074477-10074496 None:intergenic 40.0%
AAGTTCAAGACAACCAACTG+AGG + chr5_2:10074478-10074497 None:intergenic 40.0%
GCCGAGGGAGTAATAAAAAT+TGG + chr5_2:10074554-10074573 None:intergenic 40.0%
TCCTGATTGATGCACTAACA+TGG - chr5_2:10074596-10074615 Msa0756060:intron 40.0%
TCCATGTTAGTGCATCAATC+AGG + chr5_2:10074600-10074619 None:intergenic 40.0%
TGATTGATGCACTAACATGG+AGG - chr5_2:10074599-10074618 Msa0756060:intron 40.0%
TGATGCACTTGAACCATCAA+TGG - chr5_2:10074629-10074648 Msa0756060:intron 40.0%
! ACACTGACTACTTCCATTGA+TGG + chr5_2:10074645-10074664 None:intergenic 40.0%
CATAACACCGGATTAACACT+TGG - chr5_2:10074683-10074702 Msa0756060:CDS 40.0%
AAGTCTGCCAAGTGTTAATC+CGG + chr5_2:10074693-10074712 None:intergenic 40.0%
! AACACTTGGCAGACTTTTGA+TGG - chr5_2:10074697-10074716 Msa0756060:CDS 40.0%
!!! GGAAAAAATTGGGCTGGTTT+TGG - chr5_2:10074775-10074794 Msa0756060:intron 40.0%
AAAACCTAGCTTCACCATTG+CGG + chr5_2:10074905-10074924 None:intergenic 40.0%
TCAATCTACCACCTTGTTAG+AGG + chr5_2:10074951-10074970 None:intergenic 40.0%
! TATCACTGATTGGTTGACTG+AGG - chr5_2:10075028-10075047 Msa0756060:intron 40.0%
! GTCATCCAGAGTTTTTCTCA+AGG + chr5_2:10075071-10075090 None:intergenic 40.0%
AATGAGAATTAGGGTCCTTC+TGG + chr5_2:10075096-10075115 None:intergenic 40.0%
TCCGCTATACTAATGAGTAG+GGG - chr5_2:10075116-10075135 Msa0756060:intron 40.0%
TCCCCTACTCATTAGTATAG+CGG + chr5_2:10075120-10075139 None:intergenic 40.0%
CTACAAATGGTTGGCACATT+TGG - chr5_2:10075227-10075246 Msa0756060:intron 40.0%
GGACTTCATTAAGGTTGTTG+AGG - chr5_2:10075392-10075411 Msa0756060:intron 40.0%
CCAGTATGGTATCATATCGT+TGG + chr5_2:10075419-10075438 None:intergenic 40.0%
CCAACGATATGATACCATAC+TGG - chr5_2:10075416-10075435 Msa0756060:intron 40.0%
ACGATATGATACCATACTGG+TGG - chr5_2:10075419-10075438 Msa0756060:intron 40.0%
CTCCTATTTGGAAAGAGTTG+TGG - chr5_2:10075492-10075511 Msa0756060:intron 40.0%
TGCCACAACTCTTTCCAAAT+AGG + chr5_2:10075497-10075516 None:intergenic 40.0%
TCATGAGCATGAGCAAATTC+TGG - chr5_2:10075591-10075610 Msa0756060:intron 40.0%
AGGACTGTTGAATCAGACAT+TGG - chr5_2:10075667-10075686 Msa0756060:intron 40.0%
ATTTCACTTCAGAGCAGCAA+AGG - chr5_2:10075705-10075724 Msa0756060:intron 40.0%
TTTCACTTCAGAGCAGCAAA+GGG - chr5_2:10075706-10075725 Msa0756060:intron 40.0%
ACCATTCAAGGTGGTTTATG+TGG - chr5_2:10075799-10075818 Msa0756060:intron 40.0%
ACCACATAAACCACCTTGAA+TGG + chr5_2:10075803-10075822 None:intergenic 40.0%
CCTATCCCTTGTATACACAA+TGG + chr5_2:10075980-10075999 None:intergenic 40.0%
CCATTGTGTATACAAGGGAT+AGG - chr5_2:10075977-10075996 Msa0756060:intron 40.0%
! ATGATGTTATGGGCCTTATC+AGG - chr5_2:10076035-10076054 Msa0756060:intron 40.0%
TTTATCTGAGGAAGGTCTTG+GGG - chr5_2:10076134-10076153 Msa0756060:intron 40.0%
AATCAGATCAGACCAAAACC+TGG + chr5_2:10076276-10076295 None:intergenic 40.0%
AGAATATCTACACCGAAACC+TGG + chr5_2:10076307-10076326 None:intergenic 40.0%
ACAGGGTTAATGTTAGTGAC+AGG - chr5_2:10076327-10076346 Msa0756060:intron 40.0%
TTAATGTTAGTGACAGGCAG+TGG - chr5_2:10076333-10076352 Msa0756060:intron 40.0%
TTTGATACAGATGGGAGGAA+CGG - chr5_2:10076427-10076446 Msa0756060:intron 40.0%
GTAGGATTCGAGAACAGAAA+CGG - chr5_2:10076731-10076750 Msa0756060:intron 40.0%
TGTTCTTATCTGATTGCAGG+TGG - chr5_2:10076970-10076989 Msa0756060:intron 40.0%
GTTCTTATCTGATTGCAGGT+GGG - chr5_2:10076971-10076990 Msa0756060:intron 40.0%
TAAAGTTATGGGATCTTGGG+GGG - chr5_2:10077032-10077051 Msa0756060:intron 40.0%
GCATATACCAATGCTCCTAT+GGG + chr5_2:10077177-10077196 None:intergenic 40.0%
ACAAAGACAACGCTCAAAGA+AGG + chr5_2:10077613-10077632 None:intergenic 40.0%
AGCATCAACAACATAACTGC+AGG + chr5_2:10077976-10077995 None:intergenic 40.0%
AAAGGGATACCACTCAATGA+TGG + chr5_2:10078056-10078075 None:intergenic 40.0%
TGGTATCCCTTTATTGGTGT+TGG - chr5_2:10078064-10078083 Msa0756060:intron 40.0%
! GGTATCCCTTTATTGGTGTT+GGG - chr5_2:10078065-10078084 Msa0756060:intron 40.0%
GTTGGGAAACAAGATTGACA+AGG - chr5_2:10078082-10078101 Msa0756060:intron 40.0%
GAAACAAGATTGACAAGGCA+GGG - chr5_2:10078087-10078106 Msa0756060:intron 40.0%
AAACAAGATTGACAAGGCAG+GGG - chr5_2:10078088-10078107 Msa0756060:intron 40.0%
ACGCGTATCTTACATTTGGT+CGG + chr5_2:10078135-10078154 None:intergenic 40.0%
CTGGCTGTTAAGAGCAATAA+CGG - chr5_2:10078165-10078184 Msa0756060:intron 40.0%
!! TAACGGATTAAAGTGGTCCT+AGG - chr5_2:10078182-10078201 Msa0756060:intron 40.0%
GTCAATAACAGAGTCGATGT+TGG + chr5_2:10078367-10078386 None:intergenic 40.0%
!! ACATCGACTCTGTTATTGAC+TGG - chr5_2:10078367-10078386 Msa0756060:intron 40.0%
! ATTTTGTGGGGACTCAATTC+TGG - chr5_2:10078451-10078470 Msa0756060:intron 40.0%
!! TGCATGTCTAACTCTGAGAT+TGG - chr5_2:10078490-10078509 Msa0756060:intron 40.0%
TTTATCCTTTCCCTTTCCTC+AGG - chr5_2:10078513-10078532 Msa0756060:CDS 40.0%
TTACTAAGCACCTGAGGAAA+GGG + chr5_2:10078526-10078545 None:intergenic 40.0%
ATTACTAAGCACCTGAGGAA+AGG + chr5_2:10078527-10078546 None:intergenic 40.0%
GCTGGTCATTTGAAAGAAAC+AGG + chr5_2:10078709-10078728 None:intergenic 40.0%
TTCAAATGACCAGCAATGTG+TGG - chr5_2:10078715-10078734 Msa0756060:five_prime_UTR 40.0%
! AATTTAAGGCCACACATTGC+TGG + chr5_2:10078727-10078746 None:intergenic 40.0%
CGATAATAGAGTGCAAAGCG+AGG - chr5_2:10073055-10073074 Msa0756060:three_prime_UTR 45.0%
! TGTGGGAAGCTTTTCTGAAC+TGG - chr5_2:10073239-10073258 Msa0756060:three_prime_UTR 45.0%
! CTTTTCTGAACTGGTTACGC+AGG - chr5_2:10073248-10073267 Msa0756060:three_prime_UTR 45.0%
TCGACGTATTAGGGTGAGTT+TGG - chr5_2:10073451-10073470 Msa0756060:CDS 45.0%
CGACGTATTAGGGTGAGTTT+GGG - chr5_2:10073452-10073471 Msa0756060:CDS 45.0%
! TTTATCCCTAAGGGTGCACT+TGG + chr5_2:10073681-10073700 None:intergenic 45.0%
TTAGCACAGGGCATGCATAT+AGG + chr5_2:10073825-10073844 None:intergenic 45.0%
GAAAGTGATCCACTTAGCAC+AGG + chr5_2:10073838-10073857 None:intergenic 45.0%
! TTGCAGCCTTTTCTTCAAGC+AGG - chr5_2:10073899-10073918 Msa0756060:intron 45.0%
CCATCTCCTGCTTGAAGAAA+AGG + chr5_2:10073908-10073927 None:intergenic 45.0%
! CCTTTTCTTCAAGCAGGAGA+TGG - chr5_2:10073905-10073924 Msa0756060:intron 45.0%
CTTATAGGGCTTCAGAATGC+TGG - chr5_2:10073936-10073955 Msa0756060:intron 45.0%
TAGCAAATGGGGCAGTAGTA+AGG - chr5_2:10074192-10074211 Msa0756060:intron 45.0%
AAATGGGGCAGTAGTAAGGA+GGG - chr5_2:10074196-10074215 Msa0756060:intron 45.0%
GTAAGGAGGGAAGGATTTGA+AGG - chr5_2:10074209-10074228 Msa0756060:intron 45.0%
!! AGGGTACAGTTCTAAGTGAC+AGG - chr5_2:10074354-10074373 Msa0756060:intron 45.0%
AGGAATCAGGGAGGACAAAA+AGG - chr5_2:10074398-10074417 Msa0756060:intron 45.0%
GGAATCAGGGAGGACAAAAA+GGG - chr5_2:10074399-10074418 Msa0756060:intron 45.0%
AACGTTCCTGCTGTGTAACA+AGG - chr5_2:10074444-10074463 Msa0756060:intron 45.0%
ACGTTCCTGCTGTGTAACAA+GGG - chr5_2:10074445-10074464 Msa0756060:intron 45.0%
GATTTCCCTTGTTACACAGC+AGG + chr5_2:10074453-10074472 None:intergenic 45.0%
ACCACTAATTGTGAAGCCGA+GGG + chr5_2:10074569-10074588 None:intergenic 45.0%
AACCACTAATTGTGAAGCCG+AGG + chr5_2:10074570-10074589 None:intergenic 45.0%
TGATGGAGTATGACGACCAA+CGG - chr5_2:10074714-10074733 Msa0756060:CDS 45.0%
GCAGCTTATGGCACATTAGA+AGG - chr5_2:10074754-10074773 Msa0756060:CDS 45.0%
GAAACCATCGGCAACTCTTA+AGG - chr5_2:10074809-10074828 Msa0756060:intron 45.0%
! GATGGATCAATTGCCACTTG+AGG - chr5_2:10074831-10074850 Msa0756060:intron 45.0%
! TCAATTGCCACTTGAGGACA+AGG - chr5_2:10074837-10074856 Msa0756060:intron 45.0%
! GCAATGGTGAAGCTAGGTTT+TGG - chr5_2:10074904-10074923 Msa0756060:intron 45.0%
GGAATTGCTCACCTCTAACA+AGG - chr5_2:10074937-10074956 Msa0756060:intron 45.0%
ATTGCTCACCTCTAACAAGG+TGG - chr5_2:10074940-10074959 Msa0756060:intron 45.0%
ATTGGTTGACTGAGGAGTTC+AGG - chr5_2:10075036-10075055 Msa0756060:intron 45.0%
AACTCTGGATGACTTCCAGA+AGG - chr5_2:10075078-10075097 Msa0756060:intron 45.0%
TAGGGGAACTTGCACTACAA+GGG - chr5_2:10075133-10075152 Msa0756060:intron 45.0%
TTTGGGAATCCAAGCACAAG+AGG + chr5_2:10075176-10075195 None:intergenic 45.0%
!! CACATTTGGTGCAGTGGTTA+GGG - chr5_2:10075241-10075260 Msa0756060:intron 45.0%
!! ACATTTGGTGCAGTGGTTAG+GGG - chr5_2:10075242-10075261 Msa0756060:intron 45.0%
ATACCATACTGGTGGTTGAC+TGG - chr5_2:10075427-10075446 Msa0756060:intron 45.0%
! GTGGTTGACTGGTTGTTTAC+AGG - chr5_2:10075438-10075457 Msa0756060:intron 45.0%
AGCAGGTTGTACACCATTCA+AGG - chr5_2:10075787-10075806 Msa0756060:intron 45.0%
AGGTTGTACACCATTCAAGG+TGG - chr5_2:10075790-10075809 Msa0756060:intron 45.0%
ATGCAACCACAAACTTCTGC+AGG + chr5_2:10075832-10075851 None:intergenic 45.0%
AAACCTGCTAGCATCCAAGA+AGG - chr5_2:10075947-10075966 Msa0756060:intron 45.0%
ACAATGGACAATGGCCTTCT+TGG + chr5_2:10075964-10075983 None:intergenic 45.0%
AGGTGAATTTGATGCTGCTC+AGG + chr5_2:10076102-10076121 None:intergenic 45.0%
AGGTGCATACAAGAAGGTAG+AGG - chr5_2:10076383-10076402 Msa0756060:intron 45.0%
TACAAGAAGGTAGAGGTTGC+TGG - chr5_2:10076390-10076409 Msa0756060:intron 45.0%
! CAATCACGGACTGCAGAAAA+TGG + chr5_2:10076602-10076621 None:intergenic 45.0%
TGCAGGTGGGATTCAATATG+AGG - chr5_2:10076984-10077003 Msa0756060:intron 45.0%
AGTAACGTTCCCACATGCTA+CGG + chr5_2:10077069-10077088 None:intergenic 45.0%
! TGTGTTTCCCATAGGAGCAT+TGG - chr5_2:10077167-10077186 Msa0756060:intron 45.0%
CGCATATACCAATGCTCCTA+TGG + chr5_2:10077178-10077197 None:intergenic 45.0%
TATTGCCTAGCAATCGACTG+AGG - chr5_2:10077301-10077320 Msa0756060:intron 45.0%
TGAAAATTGGGATGCTGCCA+AGG - chr5_2:10077811-10077830 Msa0756060:CDS 45.0%
TCTAAGAGGCAGAGAATCCT+TGG + chr5_2:10077831-10077850 None:intergenic 45.0%
GGAAACAAGATTGACAAGGC+AGG - chr5_2:10078086-10078105 Msa0756060:intron 45.0%
AGGGACGCGTATCTTACATT+TGG + chr5_2:10078139-10078158 None:intergenic 45.0%
! GATACGCGTCCCTTTTATTC+TGG - chr5_2:10078146-10078165 Msa0756060:intron 45.0%
!! GTTTGGTTCTAAGTGCTCTC+TGG - chr5_2:10078271-10078290 Msa0756060:intron 45.0%
CAAAGCGAGGGAAGAAGGAT+AGG - chr5_2:10073068-10073087 Msa0756060:three_prime_UTR 50.0%
CTCTTCCAAGTGCACCCTTA+GGG - chr5_2:10073673-10073692 Msa0756060:CDS 50.0%
TATGCATGCCCTGTGCTAAG+TGG - chr5_2:10073826-10073845 Msa0756060:intron 50.0%
CAAATGGGGCAGTAGTAAGG+AGG - chr5_2:10074195-10074214 Msa0756060:intron 50.0%
CAAGGGAAATCTCCCTCAGT+TGG - chr5_2:10074462-10074481 Msa0756060:intron 50.0%
TCCCTCGGCTTCACAATTAG+TGG - chr5_2:10074565-10074584 Msa0756060:intron 50.0%
GGTGGCTAACAGCATAACAC+CGG - chr5_2:10074671-10074690 Msa0756060:CDS 50.0%
CCATCCTTAAGAGTTGCCGA+TGG + chr5_2:10074816-10074835 None:intergenic 50.0%
CCATCGGCAACTCTTAAGGA+TGG - chr5_2:10074813-10074832 Msa0756060:intron 50.0%
! TTGCCACTTGAGGACAAGGA+TGG - chr5_2:10074841-10074860 Msa0756060:intron 50.0%
TTGAGGACAAGGATGGCAGA+TGG - chr5_2:10074848-10074867 Msa0756060:intron 50.0%
GTAGGGGAACTTGCACTACA+AGG - chr5_2:10075132-10075151 Msa0756060:intron 50.0%
GGAACTTGCACTACAAGGGT+AGG - chr5_2:10075137-10075156 Msa0756060:intron 50.0%
CTTGCACTACAAGGGTAGGA+TGG - chr5_2:10075141-10075160 Msa0756060:intron 50.0%
TGCTAACAGCCTCTTGTGCT+TGG - chr5_2:10075164-10075183 Msa0756060:intron 50.0%
!! GCACATTTGGTGCAGTGGTT+AGG - chr5_2:10075240-10075259 Msa0756060:intron 50.0%
CAACCAGTCAACCACCAGTA+TGG + chr5_2:10075433-10075452 None:intergenic 50.0%
GAGCATGAGCAAATTCTGGC+AGG - chr5_2:10075595-10075614 Msa0756060:intron 50.0%
!! CTGCATTGACTCTGATGAGC+AGG - chr5_2:10075643-10075662 Msa0756060:intron 50.0%
! ATTGACTCTGATGAGCAGGC+AGG - chr5_2:10075647-10075666 Msa0756060:intron 50.0%
ACAGACACTCTGCCCAAGTA+AGG + chr5_2:10075745-10075764 None:intergenic 50.0%
! ACCAATTTTCACGGGACAGC+AGG - chr5_2:10075770-10075789 Msa0756060:intron 50.0%
ACCTGCTGTCCCGTGAAAAT+TGG + chr5_2:10075774-10075793 None:intergenic 50.0%
TGCACACCTGCAGAAGTTTG+TGG - chr5_2:10075823-10075842 Msa0756060:intron 50.0%
TGCTAGCAGGTTTCGTATGC+TGG + chr5_2:10075940-10075959 None:intergenic 50.0%
CAAGGGATAGGACATACGAG+TGG - chr5_2:10075989-10076008 Msa0756060:intron 50.0%
CACCACATTCTGCACTGCAT+TGG - chr5_2:10076202-10076221 Msa0756060:intron 50.0%
AGCCAATGCAGTGCAGAATG+TGG + chr5_2:10076207-10076226 None:intergenic 50.0%
!! CAGAAGGGGGAAGGTTTTGA+AGG - chr5_2:10076363-10076382 Msa0756060:intron 50.0%
AGAAGGTAGAGGTTGCTGGA+AGG - chr5_2:10076394-10076413 Msa0756060:intron 50.0%
! TCACGGACTGCAGAAAATGG+TGG + chr5_2:10076599-10076618 None:intergenic 50.0%
AACCTAGGTTCCGTAGCATG+TGG - chr5_2:10077056-10077075 Msa0756060:intron 50.0%
ACCTAGGTTCCGTAGCATGT+GGG - chr5_2:10077057-10077076 Msa0756060:intron 50.0%
CGTGTGTGTGTGTTTCCCAT+AGG - chr5_2:10077159-10077178 Msa0756060:intron 50.0%
GGAAAGGCTCTTTACTCAGC+AGG + chr5_2:10077507-10077526 None:intergenic 50.0%
GCTGAGTAAAGAGCCTTTCC+TGG - chr5_2:10077507-10077526 Msa0756060:intron 50.0%
AGCGTTGTCTTTGTCGAGCA+AGG - chr5_2:10077619-10077638 Msa0756060:intron 50.0%
CTGAGCAAGCCATCATTGAG+TGG - chr5_2:10078044-10078063 Msa0756060:intron 50.0%
!! TGGTTCTAAGTGCTCTCTGG+TGG - chr5_2:10078274-10078293 Msa0756060:intron 50.0%
AAGCACCTGAGGAAAGGGAA+AGG + chr5_2:10078521-10078540 None:intergenic 50.0%
GAGTGCAAAGCGAGGGAAGA+AGG - chr5_2:10073063-10073082 Msa0756060:three_prime_UTR 55.0%
GCGAGGGAAGAAGGATAGGA+AGG - chr5_2:10073072-10073091 Msa0756060:three_prime_UTR 55.0%
GCTCTTCCAAGTGCACCCTT+AGG - chr5_2:10073672-10073691 Msa0756060:CDS 55.0%
TTAGACCGGTGGATACAGCG+AGG - chr5_2:10074077-10074096 Msa0756060:intron 55.0%
CATGTCCTCGCTGTATCCAC+CGG + chr5_2:10074085-10074104 None:intergenic 55.0%
GGAAGTAGTCAGTGTCGCAG+AGG - chr5_2:10074650-10074669 Msa0756060:intron 55.0%
AGTAGTCAGTGTCGCAGAGG+TGG - chr5_2:10074653-10074672 Msa0756060:intron 55.0%
CTGCCATCCTTGTCCTCAAG+TGG + chr5_2:10074847-10074866 None:intergenic 55.0%
AGGACAAGGATGGCAGATGG+AGG - chr5_2:10074851-10074870 Msa0756060:intron 55.0%
GGACAAGGATGGCAGATGGA+GGG - chr5_2:10074852-10074871 Msa0756060:intron 55.0%
GACAAGGATGGCAGATGGAG+GGG - chr5_2:10074853-10074872 Msa0756060:intron 55.0%
GATGGCAGATGGAGGGGAAT+GGG - chr5_2:10074859-10074878 Msa0756060:intron 55.0%
CAGATGGAGGGGAATGGGAA+TGG - chr5_2:10074864-10074883 Msa0756060:intron 55.0%
GAGGGGAATGGGAATGGTCA+GGG - chr5_2:10074870-10074889 Msa0756060:intron 55.0%
TGAGCCGCAATGGTGAAGCT+AGG - chr5_2:10074898-10074917 Msa0756060:intron 55.0%
!! GGTTGGCACATTTGGTGCAG+TGG - chr5_2:10075235-10075254 Msa0756060:intron 55.0%
GTGCAGTGGTTAGGGGTGAA+AGG - chr5_2:10075249-10075268 Msa0756060:intron 55.0%
GGAAGAGGTAGCAAGCTTGC+AGG + chr5_2:10075339-10075358 None:intergenic 55.0%
GCAGGTTTCGTATGCTGGTC+TGG + chr5_2:10075935-10075954 None:intergenic 55.0%
TGGCCTTCTTGGATGCTAGC+AGG + chr5_2:10075953-10075972 None:intergenic 55.0%
GGATAGGACATACGAGTGGC+AGG - chr5_2:10075993-10076012 Msa0756060:intron 55.0%
ATAACACTGCTCCCACCTCC+TGG + chr5_2:10076162-10076181 None:intergenic 55.0%
TCCCACATGCTACGGAACCT+AGG + chr5_2:10077061-10077080 None:intergenic 55.0%
GTGGGAACGTTACTGTCGTG+CGG - chr5_2:10077075-10077094 Msa0756060:intron 55.0%
TGCCTAGCAATCGACTGAGG+TGG - chr5_2:10077304-10077323 Msa0756060:intron 55.0%
CACCACCTCAGTCGATTGCT+AGG + chr5_2:10077309-10077328 None:intergenic 55.0%
! TAAGTGCTCTCTGGTGGTGC+AGG - chr5_2:10078280-10078299 Msa0756060:intron 55.0%
! AAGTGCTCTCTGGTGGTGCA+GGG - chr5_2:10078281-10078300 Msa0756060:intron 55.0%
GGGGCAGTAGTAAGGAGGGA+AGG - chr5_2:10074200-10074219 Msa0756060:intron 60.0%
GGATGGCAGATGGAGGGGAA+TGG - chr5_2:10074858-10074877 Msa0756060:intron 60.0%
GGAGGGGAATGGGAATGGTC+AGG - chr5_2:10074869-10074888 Msa0756060:intron 60.0%
CAGGGATCTCTGAGCCGCAA+TGG - chr5_2:10074888-10074907 Msa0756060:intron 60.0%
AGGCAGTGGCAGCAGTCAGA+AGG - chr5_2:10076347-10076366 Msa0756060:intron 60.0%
GGCAGTGGCAGCAGTCAGAA+GGG - chr5_2:10076348-10076367 Msa0756060:intron 60.0%
GCAGTGGCAGCAGTCAGAAG+GGG - chr5_2:10076349-10076368 Msa0756060:intron 60.0%
CAGTGGCAGCAGTCAGAAGG+GGG - chr5_2:10076350-10076369 Msa0756060:intron 60.0%
! GAGGAAGGTCTTGGGGCACC+AGG - chr5_2:10076141-10076160 Msa0756060:intron 65.0%
! GAAGGTCTTGGGGCACCAGG+AGG - chr5_2:10076144-10076163 Msa0756060:intron 65.0%
! GTCTTGGGGCACCAGGAGGT+GGG - chr5_2:10076148-10076167 Msa0756060:intron 65.0%
GGCAGCAGTCAGAAGGGGGA+AGG - chr5_2:10076354-10076373 Msa0756060:intron 65.0%
GGGATCTTGGGGGGCAACCT+AGG - chr5_2:10077041-10077060 Msa0756060:intron 65.0%
! GGTCTTGGGGCACCAGGAGG+TGG - chr5_2:10076147-10076166 Msa0756060:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10073028 10078752 10073028 ID=Msa0756060;Name=Msa0756060
chr5_2 mRNA 10073028 10078752 10073028 ID=Msa0756060-mRNA-1;Parent=Msa0756060;Name=Msa0756060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=204|1|1|1|0.8|1|6|333|184
chr5_2 exon 10073028 10073478 10073028 ID=Msa0756060-mRNA-1:exon:4638;Parent=Msa0756060-mRNA-1
chr5_2 exon 10073639 10073800 10073639 ID=Msa0756060-mRNA-1:exon:4637;Parent=Msa0756060-mRNA-1
chr5_2 exon 10074670 10074791 10074670 ID=Msa0756060-mRNA-1:exon:4636;Parent=Msa0756060-mRNA-1
chr5_2 exon 10077667 10077699 10077667 ID=Msa0756060-mRNA-1:exon:4635;Parent=Msa0756060-mRNA-1
chr5_2 exon 10077794 10077875 10077794 ID=Msa0756060-mRNA-1:exon:4634;Parent=Msa0756060-mRNA-1
chr5_2 exon 10078511 10078752 10078511 ID=Msa0756060-mRNA-1:exon:4633;Parent=Msa0756060-mRNA-1
chr5_2 five_prime_UTR 10078549 10078752 10078549 ID=Msa0756060-mRNA-1:five_prime_utr;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10078511 10078548 10078511 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10077794 10077875 10077794 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10077667 10077699 10077667 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10074670 10074791 10074670 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10073639 10073800 10073639 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 CDS 10073361 10073478 10073361 ID=Msa0756060-mRNA-1:cds;Parent=Msa0756060-mRNA-1
chr5_2 three_prime_UTR 10073028 10073360 10073028 ID=Msa0756060-mRNA-1:three_prime_utr;Parent=Msa0756060-mRNA-1
Gene Sequence

>Msa0756060

ATGGGATTGTGGGAAGCTTTTCTGAACTGGTTACGCAGCCTTTTCTTCAAGCAGGAGATGGAGTTATCTCTTATAGGGCTTCAGAATGCTGGAAAGACTTCCCTTGTAAATGTTGTTGCTACCGGTGGATACAGCGAGGACATGATTCCTACAGTGGGATTCAATATGAGGAAAGTAACAAAAGGCAATGTTACAATAAAGTTATGGGATCTTGGGGGGCAACCTAGGTTCCGTAGCATGTGGGAACGTTACTGTCGTGCGGTTTCCGCTATTGTTTATGTTGTTGATGCTGCTGATCCAGATAACCTTAGCATATCAAGAAGTGAACTTCATGATTTGCTGAGCAAGCCATCATTGAGTGGTATCCCTTTATTGGTGTTGGGAAACAAGATTGACAAGGCAGGGGCTCTGTCTAAACAAGCTTTGACCGACCAAATGGATCTGAAATCAATTACTGATAGAGAAGTTTGTTGCTTCATGATCTCGTGCAAAAACTCAACCAACATCGACTCTGTTATTGACTGGCTTGTGAAGCATTCCAAATCAAAGAGCTAA

Protein sequence

>Msa0756060

MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*