Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517070 | XP_003602435.1 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517070 | sp|Q9FLU1|BIN4_ARATH | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.27e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517070 | G7J9P4 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0105370 | Msa0517070 | 0.803321 | 3.685917e-49 | -8.615850e-47 |
| Msa0472550 | Msa0517070 | 0.915793 | 3.857796e-85 | -8.615850e-47 |
| Msa0472620 | Msa0517070 | 0.920097 | 1.968496e-87 | -8.615850e-47 |
| Msa0335730 | Msa0517070 | 0.823439 | 1.384168e-53 | -8.615850e-47 |
| Msa0517070 | Msa1170670 | 0.922643 | 7.524548e-89 | -8.615850e-47 |
| Msa0517070 | Msa1405930 | 0.918804 | 9.915361e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517070 | MtrunA17_Chr3g0128321 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517070 | AT5G24630.5 | 59.804 | 204 | 70 | 5 | 208 | 409 | 242 | 435 | 1.72e-65 | 216 |
| Msa0517070 | AT5G24630.12 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa0517070 | AT5G24630.11 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa0517070 | AT5G24630.8 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa0517070 | AT5G24630.10 | 63.934 | 183 | 55 | 4 | 228 | 409 | 261 | 433 | 7.85e-65 | 214 |
| Msa0517070 | AT5G24630.2 | 63.934 | 183 | 55 | 4 | 228 | 409 | 249 | 421 | 9.29e-65 | 214 |
| Msa0517070 | AT5G24630.9 | 63.934 | 183 | 55 | 4 | 228 | 409 | 265 | 437 | 1.14e-64 | 214 |
| Msa0517070 | AT5G24630.4 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa0517070 | AT5G24630.7 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa0517070 | AT5G24630.3 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa0517070 | AT5G24630.1 | 63.934 | 183 | 55 | 4 | 228 | 409 | 268 | 440 | 1.23e-64 | 214 |
| Msa0517070 | AT5G24630.6 | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.29e-64 | 214 |
Find 110 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTACCCTTGTTCTTAT+TGG | 0.135839 | 3_4:-68585766 | None:intergenic |
| GCTTTCTTCTTTGCTGTCTT+TGG | 0.190175 | 3_4:-68588605 | None:intergenic |
| GAAGACTGCACACCAGTAAA+AGG | 0.264190 | 3_4:+68586450 | Msa0517070:CDS |
| CTTTCTTTGACTCATTTCTT+AGG | 0.266328 | 3_4:-68588650 | None:intergenic |
| TTATTATGTTCCTCATTATC+AGG | 0.269735 | 3_4:+68588865 | Msa0517070:three_prime_UTR |
| CATAGATCTGAGTGGTGATA+TGG | 0.271690 | 3_4:+68587226 | Msa0517070:CDS |
| GACAGTGTCACCGGCGAATT+AGG | 0.285567 | 3_4:-68585645 | None:intergenic |
| TTTCTTAGGCTTTGCCCTCT+TGG | 0.289065 | 3_4:-68588636 | None:intergenic |
| CGGAAAATCTCCATCCAAAA+AGG | 0.297047 | 3_4:+68586389 | Msa0517070:CDS |
| TTATTGGCCTTAAGATTCTT+AGG | 0.303993 | 3_4:-68585750 | None:intergenic |
| AGATTGGTTGCGTTCTTATC+AGG | 0.332376 | 3_4:+68585478 | Msa0517070:CDS |
| TGATAATGAGGAACATAATA+AGG | 0.341133 | 3_4:-68588863 | None:intergenic |
| AAATTCTCCTGCTCGGGGTT+TGG | 0.345340 | 3_4:-68588805 | None:intergenic |
| TGTTTATGAAGCTGAAACTA+TGG | 0.348887 | 3_4:+68588163 | Msa0517070:CDS |
| GGCTTTGCCCTCTTGGAACT+TGG | 0.354261 | 3_4:-68588629 | None:intergenic |
| CATATCACCACTCAGATCTA+TGG | 0.355840 | 3_4:-68587225 | None:intergenic |
| GAAACTAAACCTCAACCTTC+TGG | 0.374230 | 3_4:+68586342 | Msa0517070:CDS |
| AGATTCCCCGTCCGGGGATC+AGG | 0.383118 | 3_4:+68587274 | Msa0517070:CDS |
| TTTATGCTCTGCTTCCTTGT+CGG | 0.385678 | 3_4:-68586067 | None:intergenic |
| GTGTACAGTTTCTTTCTTGT+GGG | 0.388627 | 3_4:-68585849 | None:intergenic |
| TTAAGATTCTTAGGTGACTT+AGG | 0.394502 | 3_4:-68585741 | None:intergenic |
| ATTCTTACATTAGGTACAAC+AGG | 0.403661 | 3_4:-68586674 | None:intergenic |
| CGATTTACCATCTCTGTCAT+TGG | 0.404669 | 3_4:-68588749 | None:intergenic |
| CACAATGAGTGTATCGAAAC+AGG | 0.406956 | 3_4:-68588888 | None:intergenic |
| GACATACAACGCAAAACGTC+CGG | 0.449657 | 3_4:-68587734 | None:intergenic |
| AAAACAAAGGTTAATGCAAA+GGG | 0.449941 | 3_4:+68586477 | Msa0517070:CDS |
| ATTATCTCAGATTCCCCGTC+CGG | 0.450226 | 3_4:+68587266 | Msa0517070:CDS |
| CCTCAACCTTCTGGTGAAGA+TGG | 0.453566 | 3_4:+68586351 | Msa0517070:CDS |
| CAGCTCCCACATTGAATGAA+TGG | 0.455114 | 3_4:-68586256 | None:intergenic |
| ACCTTTATGACGGAGGGAAA+AGG | 0.461841 | 3_4:-68585184 | None:intergenic |
| TGATAAGAACGCAACCAATC+TGG | 0.466147 | 3_4:-68585476 | None:intergenic |
| CGTGTACAGTTTCTTTCTTG+TGG | 0.470835 | 3_4:-68585850 | None:intergenic |
| AACTGAAGATCATATTGATC+AGG | 0.477695 | 3_4:+68586317 | Msa0517070:CDS |
| CTGGAGATAGTTCGCCAGAT+TGG | 0.481862 | 3_4:+68585462 | Msa0517070:CDS |
| TTATCTCAGATTCCCCGTCC+GGG | 0.484353 | 3_4:+68587267 | Msa0517070:CDS |
| TAAGTCACCTAAGAATCTTA+AGG | 0.484727 | 3_4:+68585743 | Msa0517070:CDS |
| CCATCTTCACCAGAAGGTTG+AGG | 0.485121 | 3_4:-68586351 | None:intergenic |
| GAAGCTGAAACTATGGTTGA+AGG | 0.487381 | 3_4:+68588170 | Msa0517070:CDS |
| ATAGATCTGAGTGGTGATAT+GGG | 0.488389 | 3_4:+68587227 | Msa0517070:CDS |
| GTACTATGATGCAGGAAAGA+AGG | 0.488549 | 3_4:+68586014 | Msa0517070:intron |
| TTTGATTCTGACGAGGAAGA+TGG | 0.492638 | 3_4:+68588348 | Msa0517070:CDS |
| CAATGACAGAGATGGTAAAT+CGG | 0.497969 | 3_4:+68588750 | Msa0517070:three_prime_UTR |
| ATGTGAAAAGGGACATTGGA+TGG | 0.498992 | 3_4:+68588318 | Msa0517070:intron |
| CAGGCTCTTGTTGAGTGTCA+AGG | 0.504953 | 3_4:+68587197 | Msa0517070:intron |
| ACATTTCCTGATCCCCGGAC+GGG | 0.507819 | 3_4:-68587280 | None:intergenic |
| CGAAATGGGACAGGTGGTGA+TGG | 0.508948 | 3_4:+68586614 | Msa0517070:intron |
| GTGATATGGGAGCTGTAGGG+AGG | 0.516201 | 3_4:+68587240 | Msa0517070:CDS |
| CTGACGAGGAAGATGGTAAG+AGG | 0.521899 | 3_4:+68588355 | Msa0517070:CDS |
| AGACACCTGGTAAATCCAAA+AGG | 0.527784 | 3_4:+68588424 | Msa0517070:CDS |
| ATCTTCCTCGTCAGAATCAA+AGG | 0.528675 | 3_4:-68588346 | None:intergenic |
| TTTCATGTGAAAAGGGACAT+TGG | 0.535477 | 3_4:+68588314 | Msa0517070:intron |
| GAAAACAAAGGTTAATGCAA+AGG | 0.535733 | 3_4:+68586476 | Msa0517070:CDS |
| AAGACTGCACACCAGTAAAA+GGG | 0.542093 | 3_4:+68586451 | Msa0517070:CDS |
| AAGGTTAATGCAAAGGGGAA+AGG | 0.542305 | 3_4:+68586483 | Msa0517070:CDS |
| TACAGTTTCTTTCTTGTGGG+TGG | 0.543570 | 3_4:-68585846 | None:intergenic |
| TCTGGTGAAGATGGACTTCG+TGG | 0.547152 | 3_4:+68586360 | Msa0517070:CDS |
| CTAATTACCTTTATGACGGA+GGG | 0.548331 | 3_4:-68585190 | None:intergenic |
| TCGAAACAGGCCTGATAATG+AGG | 0.550571 | 3_4:-68588875 | None:intergenic |
| GATGGACTTCGTGGCAATGA+CGG | 0.550838 | 3_4:+68586369 | Msa0517070:CDS |
| ACAACGCAAAACGTCCGGCT+AGG | 0.551306 | 3_4:-68587729 | None:intergenic |
| AGTGGTGATATGGGAGCTGT+AGG | 0.551651 | 3_4:+68587236 | Msa0517070:CDS |
| ATTCTTACCAAACCCCGAGC+AGG | 0.555541 | 3_4:+68588798 | Msa0517070:three_prime_UTR |
| CATTTCCTGATCCCCGGACG+GGG | 0.562368 | 3_4:-68587279 | None:intergenic |
| AGATCTAATTACCTTTATGA+CGG | 0.566384 | 3_4:-68585194 | None:intergenic |
| GGTAAATGAAGATGAGAAAG+CGG | 0.573759 | 3_4:-68585423 | None:intergenic |
| CACATTTCCTGATCCCCGGA+CGG | 0.578180 | 3_4:-68587281 | None:intergenic |
| GAATCAGATGACAGTGTCAC+CGG | 0.579458 | 3_4:-68585654 | None:intergenic |
| AGAAAGCTCCAAGTTCCAAG+AGG | 0.587132 | 3_4:+68588621 | Msa0517070:CDS |
| CTGTATGAAGTCGTTCATGA+TGG | 0.587502 | 3_4:-68588123 | None:intergenic |
| TAAGCACATTTCCTGATCCC+CGG | 0.588249 | 3_4:-68587285 | None:intergenic |
| CACGCTGAGGAACAGACACC+TGG | 0.588572 | 3_4:+68588411 | Msa0517070:CDS |
| CAGGGTGCTGAAAAGAAAAG+AGG | 0.588839 | 3_4:+68588557 | Msa0517070:intron |
| CTTTGGGCAGACAGAGGCAA+AGG | 0.589063 | 3_4:+68587900 | Msa0517070:CDS |
| TCTAATTACCTTTATGACGG+AGG | 0.590426 | 3_4:-68585191 | None:intergenic |
| GCTATGATCACGACATGACT+CGG | 0.590906 | 3_4:-68586289 | None:intergenic |
| TCTTAAGGCCAATAAGAACA+AGG | 0.596455 | 3_4:+68585758 | Msa0517070:CDS |
| GGTGCCCACTCCTAATTCGC+CGG | 0.598921 | 3_4:+68585635 | Msa0517070:intron |
| ACTTTCTCAGAAAGCATCAA+AGG | 0.599098 | 3_4:-68586859 | None:intergenic |
| GCGACTATCATGTAAATACT+CGG | 0.599318 | 3_4:-68585676 | None:intergenic |
| TATCTCAGATTCCCCGTCCG+GGG | 0.600901 | 3_4:+68587268 | Msa0517070:CDS |
| ACCTGGTAAATCCAAAAGGA+AGG | 0.601971 | 3_4:+68588428 | Msa0517070:CDS |
| AAGCATCAAAGGCAATATTG+AGG | 0.602144 | 3_4:-68586848 | None:intergenic |
| GTGGTGATATGGGAGCTGTA+GGG | 0.605513 | 3_4:+68587237 | Msa0517070:CDS |
| GAAATGTGCTTAGATTTGAA+AGG | 0.606376 | 3_4:+68587296 | Msa0517070:CDS |
| GAAAGCTCCAAGTTCCAAGA+GGG | 0.606806 | 3_4:+68588622 | Msa0517070:CDS |
| TCAGCTTCATAAACATCAGA+CGG | 0.609363 | 3_4:-68588155 | None:intergenic |
| CGAAGTCCATCTTCACCAGA+AGG | 0.616356 | 3_4:-68586357 | None:intergenic |
| AAAGAAACTGTACACGCGGA+AGG | 0.621325 | 3_4:+68585857 | Msa0517070:CDS |
| AGGAATCCATTCATTCAATG+TGG | 0.621403 | 3_4:+68586250 | Msa0517070:intron |
| AAACATCTATAGTTCCTAGC+CGG | 0.625002 | 3_4:+68587715 | Msa0517070:CDS |
| TGATATGGGAGCTGTAGGGA+GGG | 0.625544 | 3_4:+68587241 | Msa0517070:CDS |
| GGAATCCATTCATTCAATGT+GGG | 0.629446 | 3_4:+68586251 | Msa0517070:intron |
| CAATTTACCAATGACAGAGA+TGG | 0.633181 | 3_4:+68588742 | Msa0517070:three_prime_UTR |
| TTTATGACGGAGGGAAAAGG+CGG | 0.633259 | 3_4:-68585181 | None:intergenic |
| GGTTAGCTTTGGGCAGACAG+AGG | 0.635444 | 3_4:+68587894 | Msa0517070:intron |
| CAAGAAAGAAACTGTACACG+CGG | 0.635708 | 3_4:+68585853 | Msa0517070:CDS |
| CTATGATGCAGGAAAGAAGG+AGG | 0.639245 | 3_4:+68586017 | Msa0517070:intron |
| TGTCACCGGCGAATTAGGAG+TGG | 0.641843 | 3_4:-68585640 | None:intergenic |
| GTCACCGGCGAATTAGGAGT+GGG | 0.658496 | 3_4:-68585639 | None:intergenic |
| CTTAAGGCCAATAAGAACAA+GGG | 0.659601 | 3_4:+68585759 | Msa0517070:CDS |
| TGAGAAAGTTCATCGCACAA+AGG | 0.671129 | 3_4:+68586873 | Msa0517070:CDS |
| TTATGACGGAGGGAAAAGGC+GGG | 0.671583 | 3_4:-68585180 | None:intergenic |
| AAGGAAGGCGGACAAAACAT+CGG | 0.672092 | 3_4:+68588443 | Msa0517070:CDS |
| AGTAAAAGGGAAGAAAACAA+AGG | 0.673109 | 3_4:+68586464 | Msa0517070:CDS |
| TGATCAAAACGAGCACGCTG+AGG | 0.690459 | 3_4:+68588398 | Msa0517070:CDS |
| GCTTCATAAACATCAGACGG+TGG | 0.691289 | 3_4:-68588152 | None:intergenic |
| TGGTAAATCCAAAAGGAAGG+CGG | 0.692323 | 3_4:+68588431 | Msa0517070:CDS |
| GCTCGATTCAGACACCGACA+AGG | 0.693845 | 3_4:+68586053 | Msa0517070:CDS |
| AAACAAAGGTTAATGCAAAG+GGG | 0.698410 | 3_4:+68586478 | Msa0517070:CDS |
| GGTGACTCCATAGATCTGAG+TGG | 0.759776 | 3_4:+68587218 | Msa0517070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTTTTAAGAAAAAA+AGG | + | chr3_4:68586521-68586540 | Msa0517070:intron | 10.0% |
| !! | ATAAGTAAATTAAATAAATG+AGG | - | chr3_4:68588021-68588040 | None:intergenic | 10.0% |
| !!! | CTTGATATTTGATTTTAATT+TGG | + | chr3_4:68585894-68585913 | Msa0517070:intron | 15.0% |
| !! | TTTAGATGAAATAGTATTTA+TGG | + | chr3_4:68585924-68585943 | Msa0517070:intron | 15.0% |
| !!! | ATATTATTTTACCGAAAAAA+AGG | + | chr3_4:68588250-68588269 | Msa0517070:intron | 15.0% |
| !!! | TCATATTTTTTCCTTTTTTT+CGG | - | chr3_4:68588264-68588283 | None:intergenic | 15.0% |
| !!! | GCTTATAATTTTGTTTTGAA+TGG | + | chr3_4:68587055-68587074 | Msa0517070:intron | 20.0% |
| !!! | TTTTTCATGAAAAAAGGAAA+TGG | - | chr3_4:68587141-68587160 | None:intergenic | 20.0% |
| !!! | ATTTCCTTTTTTCATGAAAA+AGG | + | chr3_4:68587140-68587159 | Msa0517070:intron | 20.0% |
| !!! | ATCTTACCTGTTTTAAAAAA+AGG | + | chr3_4:68587496-68587515 | Msa0517070:intron | 20.0% |
| !!! | TCTTACCTGTTTTAAAAAAA+GGG | + | chr3_4:68587497-68587516 | Msa0517070:intron | 20.0% |
| !! | ACATTAGAACAAATATAACT+TGG | - | chr3_4:68587593-68587612 | None:intergenic | 20.0% |
| !! | AAGAAAATTACGACTTATAA+TGG | - | chr3_4:68587618-68587637 | None:intergenic | 20.0% |
| !!! | CAAATCTTTATTTTCTTTTC+AGG | + | chr3_4:68587681-68587700 | Msa0517070:intron | 20.0% |
| !! | AAAGCAATATTTAAAAGGTA+TGG | - | chr3_4:68587844-68587863 | None:intergenic | 20.0% |
| !! | GTATGAAAGCAATATTTAAA+AGG | - | chr3_4:68587849-68587868 | None:intergenic | 20.0% |
| !! | AAGTAAAATCTAGATAACAA+CGG | - | chr3_4:68587927-68587946 | None:intergenic | 20.0% |
| !! | AGTTACAGGTTAAATATTAA+TGG | - | chr3_4:68588087-68588106 | None:intergenic | 20.0% |
| !!! | TCTATTATTTTCATGTGAAA+AGG | + | chr3_4:68588306-68588325 | Msa0517070:intron | 20.0% |
| !!! | CTATTATTTTCATGTGAAAA+GGG | + | chr3_4:68588307-68588326 | Msa0517070:intron | 20.0% |
| ! | AGATCTAATTACCTTTATGA+CGG | - | chr3_4:68585197-68585216 | None:intergenic | 25.0% |
| !!! | TTAGCTTTCAGATTTTAGTT+CGG | + | chr3_4:68585266-68585285 | Msa0517070:intron | 25.0% |
| ! | ATAATCACAATACAAATAGC+AGG | - | chr3_4:68586206-68586225 | None:intergenic | 25.0% |
| !!! | TATACCAAATGTTTTTGCAT+AGG | + | chr3_4:68586230-68586249 | Msa0517070:intron | 25.0% |
| !! | CAATATGATCTTCAGTTTTT+GGG | - | chr3_4:68586314-68586333 | None:intergenic | 25.0% |
| !! | TCAATATGATCTTCAGTTTT+TGG | - | chr3_4:68586315-68586334 | None:intergenic | 25.0% |
| ! | AAAACAAAGGTTAATGCAAA+GGG | + | chr3_4:68586477-68586496 | Msa0517070:CDS | 25.0% |
| ! | AGAAACATGTATAAATGGTA+AGG | - | chr3_4:68586594-68586613 | None:intergenic | 25.0% |
| ! | TTTCGAGAAACATGTATAAA+TGG | - | chr3_4:68586599-68586618 | None:intergenic | 25.0% |
| ! | TTTATACATGTTTCTCGAAA+TGG | + | chr3_4:68586599-68586618 | Msa0517070:intron | 25.0% |
| ! | TTATACATGTTTCTCGAAAT+GGG | + | chr3_4:68586600-68586619 | Msa0517070:intron | 25.0% |
| ! | AACAATGTCATTCTTACATT+AGG | - | chr3_4:68586686-68586705 | None:intergenic | 25.0% |
| !! | CCATGCTGTAAAATATTTTT+AGG | - | chr3_4:68586719-68586738 | None:intergenic | 25.0% |
| !! | CCTAAAAATATTTTACAGCA+TGG | + | chr3_4:68586716-68586735 | Msa0517070:intron | 25.0% |
| !!! | TGTTTGGTTTTATAGTTGTA+TGG | + | chr3_4:68586937-68586956 | Msa0517070:intron | 25.0% |
| !!! | GTTTGGTTTTATAGTTGTAT+GGG | + | chr3_4:68586938-68586957 | Msa0517070:intron | 25.0% |
| ! | TCGAAAACATATAAATTTCG+TGG | + | chr3_4:68587013-68587032 | Msa0517070:intron | 25.0% |
| !!! | GTTTCCTTTTTCATGAAAAA+AGG | - | chr3_4:68587147-68587166 | None:intergenic | 25.0% |
| ! | AAAATAGCTAAGCTGTATTA+TGG | - | chr3_4:68587425-68587444 | None:intergenic | 25.0% |
| !!! | AGATTCCCTTTTTTTAAAAC+AGG | - | chr3_4:68587505-68587524 | None:intergenic | 25.0% |
| ! | GAAATCAAAATGTCAAAAAG+AGG | - | chr3_4:68587566-68587585 | None:intergenic | 25.0% |
| ! | AAAGATTTGAACAATCAGTT+AGG | - | chr3_4:68587670-68587689 | None:intergenic | 25.0% |
| !! | TTTCTTCTTCTTTTTCTTTC+AGG | + | chr3_4:68587873-68587892 | Msa0517070:intron | 25.0% |
| ! | TCTATCTGAAAATAAGTTAC+AGG | - | chr3_4:68588101-68588120 | None:intergenic | 25.0% |
| !!! | TGTAACTTATTTTCAGATAG+AGG | + | chr3_4:68588100-68588119 | Msa0517070:intron | 25.0% |
| ! | TAAAATCCTCAGTTAATTGT+TGG | - | chr3_4:68588209-68588228 | None:intergenic | 25.0% |
| !! | ATAATATTTAAAGCAGCACT+AGG | - | chr3_4:68588237-68588256 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGGTAAAAATAC+TGG | + | chr3_4:68588569-68588588 | Msa0517070:CDS | 25.0% |
| !!! | TATTTTTAAATTCTCCTGCT+CGG | - | chr3_4:68588815-68588834 | None:intergenic | 25.0% |
| !! | TGATAATGAGGAACATAATA+AGG | - | chr3_4:68588866-68588885 | None:intergenic | 25.0% |
| ! | TTATTATGTTCCTCATTATC+AGG | + | chr3_4:68588865-68588884 | Msa0517070:three_prime_UTR | 25.0% |
| GAACGAAAAACAAGTGTATA+AGG | - | chr3_4:68585388-68585407 | None:intergenic | 30.0% | |
| TTGTGCAATACTAACATCAT+TGG | + | chr3_4:68585588-68585607 | Msa0517070:intron | 30.0% | |
| !! | TTACACATTTTTGTGCTACT+AGG | + | chr3_4:68585614-68585633 | Msa0517070:intron | 30.0% |
| TTAAGATTCTTAGGTGACTT+AGG | - | chr3_4:68585744-68585763 | None:intergenic | 30.0% | |
| TAAGTCACCTAAGAATCTTA+AGG | + | chr3_4:68585743-68585762 | Msa0517070:CDS | 30.0% | |
| !! | TTATTGGCCTTAAGATTCTT+AGG | - | chr3_4:68585753-68585772 | None:intergenic | 30.0% |
| GTAAAAATAACACTCTCGAA+TGG | - | chr3_4:68585980-68585999 | None:intergenic | 30.0% | |
| CTAACATTTAAAGATGCGAT+GGG | - | chr3_4:68586099-68586118 | None:intergenic | 30.0% | |
| ATTGTGTCAAAAATATGGGT+TGG | + | chr3_4:68586174-68586193 | Msa0517070:intron | 30.0% | |
| !!! | TCAAAAATATGGGTTGGTTT+TGG | + | chr3_4:68586180-68586199 | Msa0517070:intron | 30.0% |
| GATTCCTATGCAAAAACATT+TGG | - | chr3_4:68586237-68586256 | None:intergenic | 30.0% | |
| AACTGAAGATCATATTGATC+AGG | + | chr3_4:68586317-68586336 | Msa0517070:CDS | 30.0% | |
| !! | TTTGTTTTCTTCCCTTTTAC+TGG | - | chr3_4:68586465-68586484 | None:intergenic | 30.0% |
| AGTAAAAGGGAAGAAAACAA+AGG | + | chr3_4:68586464-68586483 | Msa0517070:CDS | 30.0% | |
| GAAAACAAAGGTTAATGCAA+AGG | + | chr3_4:68586476-68586495 | Msa0517070:CDS | 30.0% | |
| AAACAAAGGTTAATGCAAAG+GGG | + | chr3_4:68586478-68586497 | Msa0517070:CDS | 30.0% | |
| CATGCATATGGATATGAAAT+AGG | + | chr3_4:68586563-68586582 | Msa0517070:intron | 30.0% | |
| ATTCTTACATTAGGTACAAC+AGG | - | chr3_4:68586677-68586696 | None:intergenic | 30.0% | |
| TTGTTCATGTATCAAAGTGA+CGG | - | chr3_4:68586742-68586761 | None:intergenic | 30.0% | |
| AAAACCAAACATGTAGCAAA+GGG | - | chr3_4:68586928-68586947 | None:intergenic | 30.0% | |
| TAAAACCAAACATGTAGCAA+AGG | - | chr3_4:68586929-68586948 | None:intergenic | 30.0% | |
| CATGTTTAAATACTACCACA+GGG | + | chr3_4:68586962-68586981 | Msa0517070:intron | 30.0% | |
| !! | GTTTTGAATGGAATGACAAA+TGG | + | chr3_4:68587067-68587086 | Msa0517070:intron | 30.0% |
| GAAATGTGCTTAGATTTGAA+AGG | + | chr3_4:68587296-68587315 | Msa0517070:CDS | 30.0% | |
| !! | ACACTACTTTTGTCTAATAG+TGG | + | chr3_4:68587641-68587660 | Msa0517070:intron | 30.0% |
| GTAATCTGCATTTATCATCA+CGG | + | chr3_4:68587766-68587785 | Msa0517070:intron | 30.0% | |
| AAGGTATGGTATCTTAATCA+TGG | - | chr3_4:68587830-68587849 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTTCAGGTTAGCTT+TGG | + | chr3_4:68587883-68587902 | Msa0517070:intron | 30.0% |
| !!! | TTTTCTTTCAGGTTAGCTTT+GGG | + | chr3_4:68587884-68587903 | Msa0517070:intron | 30.0% |
| TAAATATGTCCGAATACATC+TGG | + | chr3_4:68587966-68587985 | Msa0517070:intron | 30.0% | |
| AGTAGTAATCCAGATGTATT+CGG | - | chr3_4:68587978-68587997 | None:intergenic | 30.0% | |
| ! | ATTTTACAAAATCCTGGTCA+AGG | - | chr3_4:68588058-68588077 | None:intergenic | 30.0% |
| ! | GACCAGGATTTTGTAAAATA+CGG | + | chr3_4:68588059-68588078 | Msa0517070:intron | 30.0% |
| TGTTTATGAAGCTGAAACTA+TGG | + | chr3_4:68588163-68588182 | Msa0517070:CDS | 30.0% | |
| AATCTAAACCAAAAGCAACT+AGG | - | chr3_4:68588476-68588495 | None:intergenic | 30.0% | |
| ! | GTATTGATGATTGAAATTGC+TGG | + | chr3_4:68588501-68588520 | Msa0517070:intron | 30.0% |
| TTGCTGAAAATTTCGATACA+GGG | + | chr3_4:68588539-68588558 | Msa0517070:intron | 30.0% | |
| AAAAGAGGTAAAAATACTGG+AGG | + | chr3_4:68588572-68588591 | Msa0517070:CDS | 30.0% | |
| CTTTCTTTGACTCATTTCTT+AGG | - | chr3_4:68588653-68588672 | None:intergenic | 30.0% | |
| ! | ATTTTTAAATTCTCCTGCTC+GGG | - | chr3_4:68588814-68588833 | None:intergenic | 30.0% |
| ! | CTAATTACCTTTATGACGGA+GGG | - | chr3_4:68585193-68585212 | None:intergenic | 35.0% |
| TCTAATTACCTTTATGACGG+AGG | - | chr3_4:68585194-68585213 | None:intergenic | 35.0% | |
| CAAATGATCGAACAGGTAAT+GGG | - | chr3_4:68585348-68585367 | None:intergenic | 35.0% | |
| CGAAAAACAAGTGTATAAGG+AGG | - | chr3_4:68585385-68585404 | None:intergenic | 35.0% | |
| GGTAAATGAAGATGAGAAAG+CGG | - | chr3_4:68585426-68585445 | None:intergenic | 35.0% | |
| ACCTAAAAAATGAGCAGTTC+TGG | + | chr3_4:68585443-68585462 | Msa0517070:exon | 35.0% | |
| !!! | TCCAGAACTGCTCATTTTTT+AGG | - | chr3_4:68585447-68585466 | None:intergenic | 35.0% |
| ACATTGTACATCAGTTCCTA+AGG | + | chr3_4:68585560-68585579 | Msa0517070:intron | 35.0% | |
| CATTGTACATCAGTTCCTAA+GGG | + | chr3_4:68585561-68585580 | Msa0517070:intron | 35.0% | |
| TGCAATACTAACATCATTGG+TGG | + | chr3_4:68585591-68585610 | Msa0517070:intron | 35.0% | |
| GCGACTATCATGTAAATACT+CGG | - | chr3_4:68585679-68585698 | None:intergenic | 35.0% | |
| TCTTAAGGCCAATAAGAACA+AGG | + | chr3_4:68585758-68585777 | Msa0517070:CDS | 35.0% | |
| CTTAAGGCCAATAAGAACAA+GGG | + | chr3_4:68585759-68585778 | Msa0517070:CDS | 35.0% | |
| GTGTACAGTTTCTTTCTTGT+GGG | - | chr3_4:68585852-68585871 | None:intergenic | 35.0% | |
| !! | GTCATTTTGTACTATGATGC+AGG | + | chr3_4:68586006-68586025 | Msa0517070:intron | 35.0% |
| CCTAACATTTAAAGATGCGA+TGG | - | chr3_4:68586100-68586119 | None:intergenic | 35.0% | |
| CCATCGCATCTTTAAATGTT+AGG | + | chr3_4:68586097-68586116 | Msa0517070:intron | 35.0% | |
| TCGCATCTTTAAATGTTAGG+TGG | + | chr3_4:68586100-68586119 | Msa0517070:intron | 35.0% | |
| TTAGGTGGCATTTGTAGATT+TGG | + | chr3_4:68586115-68586134 | Msa0517070:intron | 35.0% | |
| TAGGTGGCATTTGTAGATTT+GGG | + | chr3_4:68586116-68586135 | Msa0517070:intron | 35.0% | |
| TTGACACAATGCGCATAATA+AGG | - | chr3_4:68586164-68586183 | None:intergenic | 35.0% | |
| TGCGCATTGTGTCAAAAATA+TGG | + | chr3_4:68586169-68586188 | Msa0517070:intron | 35.0% | |
| GCGCATTGTGTCAAAAATAT+GGG | + | chr3_4:68586170-68586189 | Msa0517070:intron | 35.0% | |
| AGGAATCCATTCATTCAATG+TGG | + | chr3_4:68586250-68586269 | Msa0517070:intron | 35.0% | |
| GGAATCCATTCATTCAATGT+GGG | + | chr3_4:68586251-68586270 | Msa0517070:intron | 35.0% | |
| CATATCCATATGCATGAAGA+TGG | - | chr3_4:68586559-68586578 | None:intergenic | 35.0% | |
| ! | AAAGCACAATTTAGAATGCC+AGG | - | chr3_4:68586803-68586822 | None:intergenic | 35.0% |
| CTTTGCTTTCTATTTGTTCC+AGG | + | chr3_4:68586819-68586838 | Msa0517070:intron | 35.0% | |
| AAGCATCAAAGGCAATATTG+AGG | - | chr3_4:68586851-68586870 | None:intergenic | 35.0% | |
| !! | ACTTTCTCAGAAAGCATCAA+AGG | - | chr3_4:68586862-68586881 | None:intergenic | 35.0% |
| CCTGTGGTAGTATTTAAACA+TGG | - | chr3_4:68586964-68586983 | None:intergenic | 35.0% | |
| CCATGTTTAAATACTACCAC+AGG | + | chr3_4:68586961-68586980 | Msa0517070:intron | 35.0% | |
| ATAGATCTGAGTGGTGATAT+GGG | + | chr3_4:68587227-68587246 | Msa0517070:CDS | 35.0% | |
| GAGGTAATCGCTAAAAATCA+AGG | - | chr3_4:68587547-68587566 | None:intergenic | 35.0% | |
| AAACATCTATAGTTCCTAGC+CGG | + | chr3_4:68587715-68587734 | Msa0517070:CDS | 35.0% | |
| ! | TTTTGCGTTGTATGTCATCT+TGG | + | chr3_4:68587741-68587760 | Msa0517070:intron | 35.0% |
| AGGCCAAATAGAAACTTTCA+AGG | - | chr3_4:68587792-68587811 | None:intergenic | 35.0% | |
| ! | CACCGTATTTTACAAAATCC+TGG | - | chr3_4:68588064-68588083 | None:intergenic | 35.0% |
| TCAGCTTCATAAACATCAGA+CGG | - | chr3_4:68588158-68588177 | None:intergenic | 35.0% | |
| AATCCTCAGTTAATTGTTGG+TGG | - | chr3_4:68588206-68588225 | None:intergenic | 35.0% | |
| TTTCATGTGAAAAGGGACAT+TGG | + | chr3_4:68588314-68588333 | Msa0517070:intron | 35.0% | |
| ! | TTTTTCCTTTGATTCTGACG+AGG | + | chr3_4:68588341-68588360 | Msa0517070:CDS | 35.0% |
| !! | GTAAGTTTCCTAGTTGCTTT+TGG | + | chr3_4:68588465-68588484 | Msa0517070:intron | 35.0% |
| GTTGCTGAAAATTTCGATAC+AGG | + | chr3_4:68588538-68588557 | Msa0517070:intron | 35.0% | |
| CAATTTACCAATGACAGAGA+TGG | + | chr3_4:68588742-68588761 | Msa0517070:three_prime_UTR | 35.0% | |
| CAATGACAGAGATGGTAAAT+CGG | + | chr3_4:68588750-68588769 | Msa0517070:three_prime_UTR | 35.0% | |
| ! | TTTTTAAATTCTCCTGCTCG+GGG | - | chr3_4:68588813-68588832 | None:intergenic | 35.0% |
| GCAAATGATCGAACAGGTAA+TGG | - | chr3_4:68585349-68585368 | None:intergenic | 40.0% | |
| AGTGAAGCAAATGATCGAAC+AGG | - | chr3_4:68585355-68585374 | None:intergenic | 40.0% | |
| TGATAAGAACGCAACCAATC+TGG | - | chr3_4:68585479-68585498 | None:intergenic | 40.0% | |
| ! | AGATTGGTTGCGTTCTTATC+AGG | + | chr3_4:68585478-68585497 | Msa0517070:CDS | 40.0% |
| GTATTGCACAACTAACCCTT+AGG | - | chr3_4:68585579-68585598 | None:intergenic | 40.0% | |
| ! | TAGTCGCAGTTTTTCTGATG+AGG | + | chr3_4:68585692-68585711 | Msa0517070:CDS | 40.0% |
| !! | CGTCTTTTTCGTTGAAGACT+TGG | - | chr3_4:68585790-68585809 | None:intergenic | 40.0% |
| GTCTTCAACGAAAAAGACGT+TGG | + | chr3_4:68585791-68585810 | Msa0517070:CDS | 40.0% | |
| TCAACGAAAAAGACGTTGGA+AGG | + | chr3_4:68585795-68585814 | Msa0517070:CDS | 40.0% | |
| TACAGTTTCTTTCTTGTGGG+TGG | - | chr3_4:68585849-68585868 | None:intergenic | 40.0% | |
| CGTGTACAGTTTCTTTCTTG+TGG | - | chr3_4:68585853-68585872 | None:intergenic | 40.0% | |
| CAAGAAAGAAACTGTACACG+CGG | + | chr3_4:68585853-68585872 | Msa0517070:CDS | 40.0% | |
| TACACGCGGAAGGATAAAAA+TGG | + | chr3_4:68585867-68585886 | Msa0517070:CDS | 40.0% | |
| GTACTATGATGCAGGAAAGA+AGG | + | chr3_4:68586014-68586033 | Msa0517070:intron | 40.0% | |
| TTTATGCTCTGCTTCCTTGT+CGG | - | chr3_4:68586070-68586089 | None:intergenic | 40.0% | |
| AGGTGGCATTTGTAGATTTG+GGG | + | chr3_4:68586117-68586136 | Msa0517070:intron | 40.0% | |
| GAAACTAAACCTCAACCTTC+TGG | + | chr3_4:68586342-68586361 | Msa0517070:CDS | 40.0% | |
| CGGAAAATCTCCATCCAAAA+AGG | + | chr3_4:68586389-68586408 | Msa0517070:CDS | 40.0% | |
| !!! | GCTTTTGAAGCCTTTTTGGA+TGG | - | chr3_4:68586402-68586421 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTGAAGCCTTTT+TGG | - | chr3_4:68586406-68586425 | None:intergenic | 40.0% |
| CAAAAAGGCTTCAAAAGCGA+AGG | + | chr3_4:68586404-68586423 | Msa0517070:CDS | 40.0% | |
| AAGACTGCACACCAGTAAAA+GGG | + | chr3_4:68586451-68586470 | Msa0517070:CDS | 40.0% | |
| AAGGTTAATGCAAAGGGGAA+AGG | + | chr3_4:68586483-68586502 | Msa0517070:CDS | 40.0% | |
| TTGCTCCATCTTCATGCATA+TGG | + | chr3_4:68586551-68586570 | Msa0517070:intron | 40.0% | |
| GCAATATTGAGGAAGAAACC+TGG | - | chr3_4:68586840-68586859 | None:intergenic | 40.0% | |
| TGAGAAAGTTCATCGCACAA+AGG | + | chr3_4:68586873-68586892 | Msa0517070:CDS | 40.0% | |
| GATTCCCTTTGCTACATGTT+TGG | + | chr3_4:68586921-68586940 | Msa0517070:intron | 40.0% | |
| ! | AGTGAAATGTGTTGCTCATC+TGG | - | chr3_4:68586992-68587011 | None:intergenic | 40.0% |
| TGGAAGAAAAGTTGCTAGTC+TGG | + | chr3_4:68587033-68587052 | Msa0517070:intron | 40.0% | |
| !!! | ACAGAGCAGCTTTTTAGGAT+TGG | - | chr3_4:68587173-68587192 | None:intergenic | 40.0% |
| ! | GCAAAACAGAGCAGCTTTTT+AGG | - | chr3_4:68587178-68587197 | None:intergenic | 40.0% |
| ! | AAAAAGCTGCTCTGTTTTGC+AGG | + | chr3_4:68587178-68587197 | Msa0517070:intron | 40.0% |
| CATATCACCACTCAGATCTA+TGG | - | chr3_4:68587228-68587247 | None:intergenic | 40.0% | |
| CATAGATCTGAGTGGTGATA+TGG | + | chr3_4:68587226-68587245 | Msa0517070:CDS | 40.0% | |
| GTATACGCAGTGTTATCATC+AGG | - | chr3_4:68587394-68587413 | None:intergenic | 40.0% | |
| CGGCCTTGAAAGTTTCTATT+TGG | + | chr3_4:68587786-68587805 | Msa0517070:intron | 40.0% | |
| CATGGAAGTAACTAGCTACA+AGG | - | chr3_4:68587812-68587831 | None:intergenic | 40.0% | |
| CTGTATGAAGTCGTTCATGA+TGG | - | chr3_4:68588126-68588145 | None:intergenic | 40.0% | |
| GAAGCTGAAACTATGGTTGA+AGG | + | chr3_4:68588170-68588189 | Msa0517070:CDS | 40.0% | |
| CATCCACCAACAATTAACTG+AGG | + | chr3_4:68588200-68588219 | Msa0517070:intron | 40.0% | |
| ATGTGAAAAGGGACATTGGA+TGG | + | chr3_4:68588318-68588337 | Msa0517070:intron | 40.0% | |
| ATCTTCCTCGTCAGAATCAA+AGG | - | chr3_4:68588349-68588368 | None:intergenic | 40.0% | |
| TTTGATTCTGACGAGGAAGA+TGG | + | chr3_4:68588348-68588367 | Msa0517070:CDS | 40.0% | |
| AGACACCTGGTAAATCCAAA+AGG | + | chr3_4:68588424-68588443 | Msa0517070:CDS | 40.0% | |
| ACCTGGTAAATCCAAAAGGA+AGG | + | chr3_4:68588428-68588447 | Msa0517070:CDS | 40.0% | |
| TGGTAAATCCAAAAGGAAGG+CGG | + | chr3_4:68588431-68588450 | Msa0517070:CDS | 40.0% | |
| ! | GCTTTCTTCTTTGCTGTCTT+TGG | - | chr3_4:68588608-68588627 | None:intergenic | 40.0% |
| CGATTTACCATCTCTGTCAT+TGG | - | chr3_4:68588752-68588771 | None:intergenic | 40.0% | |
| CACAATGAGTGTATCGAAAC+AGG | - | chr3_4:68588891-68588910 | None:intergenic | 40.0% | |
| ! | TTTATGACGGAGGGAAAAGG+CGG | - | chr3_4:68585184-68585203 | None:intergenic | 45.0% |
| ! | ACCTTTATGACGGAGGGAAA+AGG | - | chr3_4:68585187-68585206 | None:intergenic | 45.0% |
| GAATCAGATGACAGTGTCAC+CGG | - | chr3_4:68585657-68585676 | None:intergenic | 45.0% | |
| GGCACTACCCTTGTTCTTAT+TGG | - | chr3_4:68585769-68585788 | None:intergenic | 45.0% | |
| AAAGAAACTGTACACGCGGA+AGG | + | chr3_4:68585857-68585876 | Msa0517070:CDS | 45.0% | |
| CTATGATGCAGGAAAGAAGG+AGG | + | chr3_4:68586017-68586036 | Msa0517070:intron | 45.0% | |
| CAGCTCCCACATTGAATGAA+TGG | - | chr3_4:68586259-68586278 | None:intergenic | 45.0% | |
| GCTATGATCACGACATGACT+CGG | - | chr3_4:68586292-68586311 | None:intergenic | 45.0% | |
| GAAGACTGCACACCAGTAAA+AGG | + | chr3_4:68586450-68586469 | Msa0517070:CDS | 45.0% | |
| ! | CAAAGGGGAAAGGTACGAAA+TGG | + | chr3_4:68586493-68586512 | Msa0517070:intron | 45.0% |
| CATGTTTCTCGAAATGGGAC+AGG | + | chr3_4:68586605-68586624 | Msa0517070:intron | 45.0% | |
| ! | TTTAGAATGCCAGGCTGGAT+AGG | - | chr3_4:68586794-68586813 | None:intergenic | 45.0% |
| ! | CACAATTTAGAATGCCAGGC+TGG | - | chr3_4:68586799-68586818 | None:intergenic | 45.0% |
| AAGTTCATCGCACAAAGGTC+AGG | + | chr3_4:68586878-68586897 | Msa0517070:intron | 45.0% | |
| ATTATCTCAGATTCCCCGTC+CGG | + | chr3_4:68587266-68587285 | Msa0517070:CDS | 45.0% | |
| TAAGCACATTTCCTGATCCC+CGG | - | chr3_4:68587288-68587307 | None:intergenic | 45.0% | |
| GACATACAACGCAAAACGTC+CGG | - | chr3_4:68587737-68587756 | None:intergenic | 45.0% | |
| GCTTCATAAACATCAGACGG+TGG | - | chr3_4:68588155-68588174 | None:intergenic | 45.0% | |
| !! | CTCGTTTTGATCAGTTGGGT+GGG | - | chr3_4:68588391-68588410 | None:intergenic | 45.0% |
| !! | CGTGCTCGTTTTGATCAGTT+GGG | - | chr3_4:68588395-68588414 | None:intergenic | 45.0% |
| ! | GCCTTCCTTTTGGATTTACC+AGG | - | chr3_4:68588432-68588451 | None:intergenic | 45.0% |
| ! | TGTTTTGTCCGCCTTCCTTT+TGG | - | chr3_4:68588442-68588461 | None:intergenic | 45.0% |
| AAGGAAGGCGGACAAAACAT+CGG | + | chr3_4:68588443-68588462 | Msa0517070:CDS | 45.0% | |
| !! | CAGGGTGCTGAAAAGAAAAG+AGG | + | chr3_4:68588557-68588576 | Msa0517070:intron | 45.0% |
| AGAAAGCTCCAAGTTCCAAG+AGG | + | chr3_4:68588621-68588640 | Msa0517070:CDS | 45.0% | |
| GAAAGCTCCAAGTTCCAAGA+GGG | + | chr3_4:68588622-68588641 | Msa0517070:CDS | 45.0% | |
| TTTCTTAGGCTTTGCCCTCT+TGG | - | chr3_4:68588639-68588658 | None:intergenic | 45.0% | |
| ! | TCGAAACAGGCCTGATAATG+AGG | - | chr3_4:68588878-68588897 | None:intergenic | 45.0% |
| ! | TTATGACGGAGGGAAAAGGC+GGG | - | chr3_4:68585183-68585202 | None:intergenic | 50.0% |
| ! | GCCTTTTCCCTCCGTCATAA+AGG | + | chr3_4:68585183-68585202 | Msa0517070:five_prime_UTR | 50.0% |
| CTGGAGATAGTTCGCCAGAT+TGG | + | chr3_4:68585462-68585481 | Msa0517070:CDS | 50.0% | |
| CCATCTTCACCAGAAGGTTG+AGG | - | chr3_4:68586354-68586373 | None:intergenic | 50.0% | |
| CCTCAACCTTCTGGTGAAGA+TGG | + | chr3_4:68586351-68586370 | Msa0517070:CDS | 50.0% | |
| CGAAGTCCATCTTCACCAGA+AGG | - | chr3_4:68586360-68586379 | None:intergenic | 50.0% | |
| ! | TCTGGTGAAGATGGACTTCG+TGG | + | chr3_4:68586360-68586379 | Msa0517070:CDS | 50.0% |
| ! | GATGGACTTCGTGGCAATGA+CGG | + | chr3_4:68586369-68586388 | Msa0517070:CDS | 50.0% |
| GTTTCTCGAAATGGGACAGG+TGG | + | chr3_4:68586608-68586627 | Msa0517070:intron | 50.0% | |
| GGCTGGATAGGCAGTCAATA+TGG | - | chr3_4:68586782-68586801 | None:intergenic | 50.0% | |
| ! | TATTGACTGCCTATCCAGCC+TGG | + | chr3_4:68586782-68586801 | Msa0517070:intron | 50.0% |
| TTCATCGCACAAAGGTCAGG+TGG | + | chr3_4:68586881-68586900 | Msa0517070:intron | 50.0% | |
| CAGGCTCTTGTTGAGTGTCA+AGG | + | chr3_4:68587197-68587216 | Msa0517070:intron | 50.0% | |
| GGTGACTCCATAGATCTGAG+TGG | + | chr3_4:68587218-68587237 | Msa0517070:CDS | 50.0% | |
| AGTGGTGATATGGGAGCTGT+AGG | + | chr3_4:68587236-68587255 | Msa0517070:CDS | 50.0% | |
| GTGGTGATATGGGAGCTGTA+GGG | + | chr3_4:68587237-68587256 | Msa0517070:CDS | 50.0% | |
| TGATATGGGAGCTGTAGGGA+GGG | + | chr3_4:68587241-68587260 | Msa0517070:CDS | 50.0% | |
| TTATCTCAGATTCCCCGTCC+GGG | + | chr3_4:68587267-68587286 | Msa0517070:CDS | 50.0% | |
| ! | GTGATTAGTCAGCCTTGACC+AGG | + | chr3_4:68588043-68588062 | Msa0517070:intron | 50.0% |
| CTGACGAGGAAGATGGTAAG+AGG | + | chr3_4:68588355-68588374 | Msa0517070:CDS | 50.0% | |
| !! | GTTTTGATCAGTTGGGTGGG+CGG | - | chr3_4:68588388-68588407 | None:intergenic | 50.0% |
| !! | GCTCGTTTTGATCAGTTGGG+TGG | - | chr3_4:68588392-68588411 | None:intergenic | 50.0% |
| !! | GCGTGCTCGTTTTGATCAGT+TGG | - | chr3_4:68588396-68588415 | None:intergenic | 50.0% |
| TGATCAAAACGAGCACGCTG+AGG | + | chr3_4:68588398-68588417 | Msa0517070:CDS | 50.0% | |
| ATTCTTACCAAACCCCGAGC+AGG | + | chr3_4:68588798-68588817 | Msa0517070:three_prime_UTR | 50.0% | |
| AAATTCTCCTGCTCGGGGTT+TGG | - | chr3_4:68588808-68588827 | None:intergenic | 50.0% | |
| GTCACCGGCGAATTAGGAGT+GGG | - | chr3_4:68585642-68585661 | None:intergenic | 55.0% | |
| TGTCACCGGCGAATTAGGAG+TGG | - | chr3_4:68585643-68585662 | None:intergenic | 55.0% | |
| GACAGTGTCACCGGCGAATT+AGG | - | chr3_4:68585648-68585667 | None:intergenic | 55.0% | |
| GCTCGATTCAGACACCGACA+AGG | + | chr3_4:68586053-68586072 | Msa0517070:CDS | 55.0% | |
| CGAAATGGGACAGGTGGTGA+TGG | + | chr3_4:68586614-68586633 | Msa0517070:intron | 55.0% | |
| TGCTCATCTGGTTGTCCCTG+TGG | - | chr3_4:68586980-68586999 | None:intergenic | 55.0% | |
| GTGATATGGGAGCTGTAGGG+AGG | + | chr3_4:68587240-68587259 | Msa0517070:CDS | 55.0% | |
| TATCTCAGATTCCCCGTCCG+GGG | + | chr3_4:68587268-68587287 | Msa0517070:CDS | 55.0% | |
| ACATTTCCTGATCCCCGGAC+GGG | - | chr3_4:68587283-68587302 | None:intergenic | 55.0% | |
| CACATTTCCTGATCCCCGGA+CGG | - | chr3_4:68587284-68587303 | None:intergenic | 55.0% | |
| ACAACGCAAAACGTCCGGCT+AGG | - | chr3_4:68587732-68587751 | None:intergenic | 55.0% | |
| !! | GGTTAGCTTTGGGCAGACAG+AGG | + | chr3_4:68587894-68587913 | Msa0517070:intron | 55.0% |
| CTTTGGGCAGACAGAGGCAA+AGG | + | chr3_4:68587900-68587919 | Msa0517070:CDS | 55.0% | |
| GGCTTTGCCCTCTTGGAACT+TGG | - | chr3_4:68588632-68588651 | None:intergenic | 55.0% | |
| GGTGCCCACTCCTAATTCGC+CGG | + | chr3_4:68585635-68585654 | Msa0517070:intron | 60.0% | |
| CATTTCCTGATCCCCGGACG+GGG | - | chr3_4:68587282-68587301 | None:intergenic | 60.0% | |
| CACGCTGAGGAACAGACACC+TGG | + | chr3_4:68588411-68588430 | Msa0517070:CDS | 60.0% | |
| AGATTCCCCGTCCGGGGATC+AGG | + | chr3_4:68587274-68587293 | Msa0517070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 68585169 | 68588950 | 68585169 | ID=Msa0517070;Name=Msa0517070 |
| chr3_4 | mRNA | 68585169 | 68588950 | 68585169 | ID=Msa0517070-mRNA-1;Parent=Msa0517070;Name=Msa0517070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74|1|1|1|0.91|0.84|13|289|412 |
| chr3_4 | exon | 68585169 | 68585204 | 68585169 | ID=Msa0517070-mRNA-1:exon:18065;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68585414 | 68585499 | 68585414 | ID=Msa0517070-mRNA-1:exon:18066;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68585636 | 68585888 | 68585636 | ID=Msa0517070-mRNA-1:exon:18067;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68586028 | 68586089 | 68586028 | ID=Msa0517070-mRNA-1:exon:18068;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68586252 | 68586504 | 68586252 | ID=Msa0517070-mRNA-1:exon:18069;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68586627 | 68586688 | 68586627 | ID=Msa0517070-mRNA-1:exon:18070;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68586841 | 68586894 | 68586841 | ID=Msa0517070-mRNA-1:exon:18071;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68587200 | 68587317 | 68587200 | ID=Msa0517070-mRNA-1:exon:18072;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68587703 | 68587749 | 68587703 | ID=Msa0517070-mRNA-1:exon:18073;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68587895 | 68587921 | 68587895 | ID=Msa0517070-mRNA-1:exon:18074;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68588116 | 68588191 | 68588116 | ID=Msa0517070-mRNA-1:exon:18075;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68588328 | 68588464 | 68588328 | ID=Msa0517070-mRNA-1:exon:18076;Parent=Msa0517070-mRNA-1 |
| chr3_4 | exon | 68588560 | 68588950 | 68588560 | ID=Msa0517070-mRNA-1:exon:18077;Parent=Msa0517070-mRNA-1 |
| chr3_4 | five_prime_UTR | 68585169 | 68585204 | 68585169 | ID=Msa0517070-mRNA-1:five_prime_utr;Parent=Msa0517070-mRNA-1 |
| chr3_4 | five_prime_UTR | 68585414 | 68585451 | 68585414 | ID=Msa0517070-mRNA-1:five_prime_utr;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68585452 | 68585499 | 68585452 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68585636 | 68585888 | 68585636 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68586028 | 68586089 | 68586028 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68586252 | 68586504 | 68586252 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68586627 | 68586688 | 68586627 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68586841 | 68586894 | 68586841 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68587200 | 68587317 | 68587200 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68587703 | 68587749 | 68587703 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68587895 | 68587921 | 68587895 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68588116 | 68588191 | 68588116 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68588328 | 68588464 | 68588328 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | CDS | 68588560 | 68588661 | 68588560 | ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1 |
| chr3_4 | three_prime_UTR | 68588662 | 68588950 | 68588662 | ID=Msa0517070-mRNA-1:three_prime_utr;Parent=Msa0517070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
