AlfalfaGEDB | Msa0517070

M. sativa cultivar zhongmu-4 / Msa0517070

KEGG: -
GO: GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517070	XP_003602435.1	96.394	416	11	2	1	412	1	416	0.0	797

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517070	sp\|Q9FLU1\|BIN4_ARATH	63.934	183	55	4	228	409	271	443	1.27e-63	214

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517070	G7J9P4	96.394	416	11	2	1	412	1	416	0.0	797

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0105370	Msa0517070	0.803321	3.685917e-49	-8.615850e-47
Msa0335730	Msa0517070	0.823439	1.384168e-53	-8.615850e-47
Msa0472550	Msa0517070	0.915793	3.857796e-85	-8.615850e-47
Msa0472620	Msa0517070	0.920097	1.968496e-87	-8.615850e-47
Msa0517070	Msa1170670	0.922643	7.524548e-89	-8.615850e-47
Msa0517070	Msa1405930	0.918804	9.915361e-87	-8.615850e-47

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517070	MtrunA17_Chr3g0128321	96.394	416	11	2	1	412	1	416	0.0	797

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517070	AT5G24630.5	59.804	204	70	5	208	409	242	435	1.72e-65	216
Msa0517070	AT5G24630.12	63.934	183	55	4	228	409	225	397	3.81e-65	214
Msa0517070	AT5G24630.11	63.934	183	55	4	228	409	225	397	3.81e-65	214
Msa0517070	AT5G24630.8	63.934	183	55	4	228	409	225	397	3.81e-65	214
Msa0517070	AT5G24630.10	63.934	183	55	4	228	409	261	433	7.85e-65	214
Msa0517070	AT5G24630.2	63.934	183	55	4	228	409	249	421	9.29e-65	214
Msa0517070	AT5G24630.9	63.934	183	55	4	228	409	265	437	1.14e-64	214
Msa0517070	AT5G24630.4	63.934	183	55	4	228	409	267	439	1.20e-64	214
Msa0517070	AT5G24630.7	63.934	183	55	4	228	409	267	439	1.20e-64	214
Msa0517070	AT5G24630.3	63.934	183	55	4	228	409	267	439	1.20e-64	214

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 110 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGGTTAATGCAAA+GGG	0.449941	3_4:+68586477	Msa0517070:CDS
AAACAAAGGTTAATGCAAAG+GGG	0.698410	3_4:+68586478	Msa0517070:CDS
AAACATCTATAGTTCCTAGC+CGG	0.625002	3_4:+68587715	Msa0517070:CDS
AAAGAAACTGTACACGCGGA+AGG	0.621325	3_4:+68585857	Msa0517070:CDS
AAATTCTCCTGCTCGGGGTT+TGG	0.345340	3_4:-68588805	None:intergenic
AACTGAAGATCATATTGATC+AGG	0.477695	3_4:+68586317	Msa0517070:CDS
AAGACTGCACACCAGTAAAA+GGG	0.542093	3_4:+68586451	Msa0517070:CDS
AAGCATCAAAGGCAATATTG+AGG	0.602144	3_4:-68586848	None:intergenic
AAGGAAGGCGGACAAAACAT+CGG	0.672092	3_4:+68588443	Msa0517070:CDS
AAGGTTAATGCAAAGGGGAA+AGG	0.542305	3_4:+68586483	Msa0517070:CDS

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAACGAAAAACAAGTGTATA+AGG	-	chr3_4:68585388-68585407	None:intergenic	30.0%
TTGTGCAATACTAACATCAT+TGG	+	chr3_4:68585588-68585607	Msa0517070:intron	30.0%
TTAAGATTCTTAGGTGACTT+AGG	-	chr3_4:68585744-68585763	None:intergenic	30.0%
TAAGTCACCTAAGAATCTTA+AGG	+	chr3_4:68585743-68585762	Msa0517070:CDS	30.0%
GTAAAAATAACACTCTCGAA+TGG	-	chr3_4:68585980-68585999	None:intergenic	30.0%
CTAACATTTAAAGATGCGAT+GGG	-	chr3_4:68586099-68586118	None:intergenic	30.0%
ATTGTGTCAAAAATATGGGT+TGG	+	chr3_4:68586174-68586193	Msa0517070:intron	30.0%
GATTCCTATGCAAAAACATT+TGG	-	chr3_4:68586237-68586256	None:intergenic	30.0%
AACTGAAGATCATATTGATC+AGG	+	chr3_4:68586317-68586336	Msa0517070:CDS	30.0%
AGTAAAAGGGAAGAAAACAA+AGG	+	chr3_4:68586464-68586483	Msa0517070:CDS	30.0%

Showing 1 to 10 of 259 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	68585169	68588950	68585169	ID=Msa0517070;Name=Msa0517070
chr3_4	mRNA	68585169	68588950	68585169	ID=Msa0517070-mRNA-1;Parent=Msa0517070;Name=Msa0517070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74\|1\|1\|1\|0.91\|0.84\|13\|289\|412
chr3_4	exon	68585169	68585204	68585169	ID=Msa0517070-mRNA-1:exon:18065;Parent=Msa0517070-mRNA-1
chr3_4	exon	68585414	68585499	68585414	ID=Msa0517070-mRNA-1:exon:18066;Parent=Msa0517070-mRNA-1
chr3_4	exon	68585636	68585888	68585636	ID=Msa0517070-mRNA-1:exon:18067;Parent=Msa0517070-mRNA-1
chr3_4	exon	68586028	68586089	68586028	ID=Msa0517070-mRNA-1:exon:18068;Parent=Msa0517070-mRNA-1
chr3_4	exon	68586252	68586504	68586252	ID=Msa0517070-mRNA-1:exon:18069;Parent=Msa0517070-mRNA-1
chr3_4	exon	68586627	68586688	68586627	ID=Msa0517070-mRNA-1:exon:18070;Parent=Msa0517070-mRNA-1
chr3_4	exon	68586841	68586894	68586841	ID=Msa0517070-mRNA-1:exon:18071;Parent=Msa0517070-mRNA-1
chr3_4	exon	68587200	68587317	68587200	ID=Msa0517070-mRNA-1:exon:18072;Parent=Msa0517070-mRNA-1
chr3_4	exon	68587703	68587749	68587703	ID=Msa0517070-mRNA-1:exon:18073;Parent=Msa0517070-mRNA-1
chr3_4	exon	68587895	68587921	68587895	ID=Msa0517070-mRNA-1:exon:18074;Parent=Msa0517070-mRNA-1
chr3_4	exon	68588116	68588191	68588116	ID=Msa0517070-mRNA-1:exon:18075;Parent=Msa0517070-mRNA-1
chr3_4	exon	68588328	68588464	68588328	ID=Msa0517070-mRNA-1:exon:18076;Parent=Msa0517070-mRNA-1
chr3_4	exon	68588560	68588950	68588560	ID=Msa0517070-mRNA-1:exon:18077;Parent=Msa0517070-mRNA-1
chr3_4	five_prime_UTR	68585169	68585204	68585169	ID=Msa0517070-mRNA-1:five_prime_utr;Parent=Msa0517070-mRNA-1
chr3_4	five_prime_UTR	68585414	68585451	68585414	ID=Msa0517070-mRNA-1:five_prime_utr;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68585452	68585499	68585452	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68585636	68585888	68585636	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68586028	68586089	68586028	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68586252	68586504	68586252	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68586627	68586688	68586627	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68586841	68586894	68586841	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68587200	68587317	68587200	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68587703	68587749	68587703	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68587895	68587921	68587895	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68588116	68588191	68588116	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68588328	68588464	68588328	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	CDS	68588560	68588661	68588560	ID=Msa0517070-mRNA-1:cds;Parent=Msa0517070-mRNA-1
chr3_4	three_prime_UTR	68588662	68588950	68588662	ID=Msa0517070-mRNA-1:three_prime_utr;Parent=Msa0517070-mRNA-1

Gene Sequence

>Msa0517070

ATGAGCAGTTCTGGAGATAGTTCGCCAGATTGGTTGCGTTCTTATCAGGTGCCCACTCCTAATTCGCCGGTGACACTGTCATCTGATTCCGAGTATTTACATGATAGTCGCAGTTTTTCTGATGAGGATATAATTGACGATGAAGATTCATCTCCTAAGTCACCTAAGAATCTTAAGGCCAATAAGAACAAGGGTAGTGCCAAGTCTTCAACGAAAAAGACGTTGGAAGGAAAAAGTCTCAAGATAGAAGATGAAGCACCACCCACAAGAAAGAAACTGTACACGCGGAAGGATAAAAATGGAAAGAAGGAGGAAAAGAAGATCAAGCTCGATTCAGACACCGACAAGGAAGCAGAGCATAAAGAATCCATTCATTCAATGTGGGAGCTGTCATCAGATTCCGAGTCATGTCGTGATCATAGCCCAAAAACTGAAGATCATATTGATCAGGTAGAAACTAAACCTCAACCTTCTGGTGAAGATGGACTTCGTGGCAATGACGGAAAATCTCCATCCAAAAAGGCTTCAAAAGCGAAGGCATCACAAAAACAAATAGACGTAGAAGACTGCACACCAGTAAAAGGGAAGAAAACAAAGGTTAATGCAAAGGGGAAAGGTGGTGATGGAGATGTAGAAGTTAAAGATGAAGAAACTTTTGAAAAGCCTGTTGTACCTAATGTTTCTTCCTCAATATTGCCTTTGATGCTTTCTGAGAAAGTTCATCGCACAAAGGCTCTTGTTGAGTGTCAAGGTGACTCCATAGATCTGAGTGGTGATATGGGAGCTGTAGGGAGGGTTATTATCTCAGATTCCCCGTCCGGGGATCAGGAAATGTGCTTAGATTTGAAAGGAACAATATACAAAACATCTATAGTTCCTAGCCGGACGTTTTGCGTTGTTAGCTTTGGGCAGACAGAGGCAAAGATAGAGGCCATCATGAACGACTTCATACAGCTGAATCCACCGTCTGATGTTTATGAAGCTGAAACTATGGTTGAAGGGACATTGGATGGTTTTTCCTTTGATTCTGACGAGGAAGATGGTAAGAGGCAGAAAACCGCCCACCCAACTGATCAAAACGAGCACGCTGAGGAACAGACACCTGGTAAATCCAAAAGGAAGGCGGACAAAACATCGGGTGCTGAAAAGAAAAGAGGTAAAAATACTGGAGGAAAATCACAGCCAAAGACAGCAAAGAAGAAAGCTCCAAGTTCCAAGAGGGCAAAGCCTAAGAAATGA

Protein sequence

>Msa0517070

MSSSGDSSPDWLRSYQVPTPNSPVTLSSDSEYLHDSRSFSDEDIIDDEDSSPKSPKNLKANKNKGSAKSSTKKTLEGKSLKIEDEAPPTRKKLYTRKDKNGKKEEKKIKLDSDTDKEAEHKESIHSMWELSSDSESCRDHSPKTEDHIDQVETKPQPSGEDGLRGNDGKSPSKKASKAKASQKQIDVEDCTPVKGKKTKVNAKGKGGDGDVEVKDEETFEKPVVPNVSSSILPLMLSEKVHRTKALVECQGDSIDLSGDMGAVGRVIISDSPSGDQEMCLDLKGTIYKTSIVPSRTFCVVSFGQTEAKIEAIMNDFIQLNPPSDVYEAETMVEGTLDGFSFDSDEEDGKRQKTAHPTDQNEHAEEQTPGKSKRKADKTSGAEKKRGKNTGGKSQPKTAKKKAPSSKRAKPKK*