AlfalfaGEDB | Msa0105370

M. sativa cultivar zhongmu-4 / Msa0105370

KEGG: K09500
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031
PFAM: PF00118.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105370	XP_013466502.1	97.422	543	0	1	1	529	1	543	0.0	1073

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105370	sp\|Q94K05\|TCPQ_ARATH	82.022	534	79	2	1	517	1	534	0.0	912

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105370	A0A072VGH7	97.422	543	0	1	1	529	1	543	0.0	1073

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0105370	0.809354	1.972602e-50	-8.615850e-47
Msa0003720	Msa0105370	0.869733	2.482189e-66	-8.615850e-47
Msa0011740	Msa0105370	0.803883	2.818750e-49	-8.615850e-47
Msa0025720	Msa0105370	0.827455	1.550118e-54	-8.615850e-47
Msa0027230	Msa0105370	0.832321	1.010739e-55	-8.615850e-47
Msa0027260	Msa0105370	0.825559	4.387711e-54	-8.615850e-47
Msa0030200	Msa0105370	0.802531	5.367173e-49	-8.615850e-47
Msa0037770	Msa0105370	0.815887	7.341054e-52	-8.615850e-47
Msa0040690	Msa0105370	0.811272	7.607011e-51	-8.615850e-47
Msa0042280	Msa0105370	0.806963	6.373421e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105370	MtrunA17_Chr1g0160221	97.422	543	0	1	1	529	1	543	0.0	1073
Msa0105370	MtrunA17_Chr6g0461541	89.279	541	42	3	4	529	1	540	0.0	974
Msa0105370	MtrunA17_Chr8g0380331	30.174	517	321	10	28	509	23	534	7.57e-65	220
Msa0105370	MtrunA17_Chr2g0282161	27.969	522	338	12	29	519	24	538	8.65e-64	217
Msa0105370	MtrunA17_Chr5g0440381	26.908	524	350	11	11	509	11	526	6.03e-58	202
Msa0105370	MtrunA17_Chr3g0123341	26.357	516	358	7	13	509	18	530	4.95e-51	182
Msa0105370	MtrunA17_Chr3g0139481	26.130	509	301	6	23	512	23	475	6.40e-49	176
Msa0105370	MtrunA17_Chr7g0241881	27.856	499	331	10	36	513	30	520	7.30e-47	171
Msa0105370	MtrunA17_Chr7g0272821	27.856	499	331	11	36	513	30	520	1.92e-46	170
Msa0105370	MtrunA17_Chr7g0214841	24.131	518	354	10	25	511	18	527	1.74e-37	145

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105370	AT3G03960.1	82.022	534	79	2	1	517	1	534	0.0	912
Msa0105370	AT3G18190.1	27.756	508	339	6	29	512	33	536	3.70e-65	221
Msa0105370	AT3G20050.1	29.787	517	323	10	28	509	23	534	1.62e-64	219
Msa0105370	AT5G26360.1	28.083	527	331	13	29	519	24	538	2.02e-59	206
Msa0105370	AT3G11830.1	27.273	528	343	13	11	509	11	526	1.24e-57	201
Msa0105370	AT3G11830.2	27.567	526	342	14	11	509	11	524	1.72e-56	198
Msa0105370	AT1G24510.1	26.515	528	361	9	3	509	9	530	2.06e-51	184
Msa0105370	AT5G20890.1	26.559	497	340	9	36	513	30	520	2.08e-44	164
Msa0105370	AT1G24510.3	25.054	467	329	6	62	509	13	477	7.66e-43	159
Msa0105370	AT3G02530.1	25.486	514	342	11	30	511	23	527	5.80e-41	155

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Find 133 sgRNAs with CRISPR-Local

Find 598 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAAATCTTGGCAGC+AGG	0.529463	1_3:-13867255	None:intergenic
AAAATGGTGGGTTTACCTTA+TGG	0.271750	1_3:+13866295	Msa0105370:exon
AAACCCTGTAAACTTTAATG+TGG	0.581302	1_3:+13868556	Msa0105370:CDS
AAAGAGAATGGAAAAGGCAA+AGG	0.578368	1_3:+13868673	Msa0105370:CDS
AAAGCTCAACAAGAGGAAAT+TGG	0.382605	1_3:+13867285	Msa0105370:CDS
AAATAACTTGCTCCTTGTCA+CGG	0.594985	1_3:-13868346	None:intergenic
AAATTATTCGAAAACTGAAG+AGG	0.610195	1_3:+13870856	Msa0105370:CDS
AACCTAACAAACCTTAGCAA+TGG	0.596276	1_3:-13867418	None:intergenic
AAGTAATTTACTTAGCCATG+TGG	0.643526	1_3:-13872859	None:intergenic
AATATTGGACGAACTTGTTG+AGG	0.552189	1_3:+13868301	Msa0105370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAATGAAAATGAAGTGTGT+AGG	-	chr1_3:13866183-13866202	None:intergenic	30.0%
AAATGAGAATGTGAAGTTAG+GGG	-	chr1_3:13866454-13866473	None:intergenic	30.0%
CAAAATGAGAATGTGAAGTT+AGG	-	chr1_3:13866456-13866475	None:intergenic	30.0%
CCTAGATCACAAAATAAACT+TGG	-	chr1_3:13866531-13866550	None:intergenic	30.0%
GTTATTAGGGATGAATAAGA+TGG	+	chr1_3:13867158-13867177	Msa0105370:intron	30.0%
TCATTTCGATTGATCCAAAA+TGG	+	chr1_3:13867448-13867467	Msa0105370:intron	30.0%
GCCTAATAAAATTAAACGAG+GGG	+	chr1_3:13868068-13868087	Msa0105370:intron	30.0%
CTTTATCCTATTTCAGACTA+TGG	+	chr1_3:13868277-13868296	Msa0105370:intron	30.0%
AAACCCTGTAAACTTTAATG+TGG	+	chr1_3:13868556-13868575	Msa0105370:CDS	30.0%
TGTCCACATTAAAGTTTACA+GGG	-	chr1_3:13868562-13868581	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	13866162	13874884	13866162	ID=Msa0105370;Name=Msa0105370
chr1_3	mRNA	13866162	13874884	13866162	ID=Msa0105370-mRNA-1;Parent=Msa0105370;Name=Msa0105370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=136\|0.91\|0.92\|1\|1\|1\|13\|395\|529
chr1_3	exon	13866162	13866439	13866162	ID=Msa0105370-mRNA-1:exon:5439;Parent=Msa0105370-mRNA-1
chr1_3	exon	13867166	13867428	13867166	ID=Msa0105370-mRNA-1:exon:5440;Parent=Msa0105370-mRNA-1
chr1_3	exon	13868293	13868439	13868293	ID=Msa0105370-mRNA-1:exon:5441;Parent=Msa0105370-mRNA-1
chr1_3	exon	13868533	13868694	13868533	ID=Msa0105370-mRNA-1:exon:5442;Parent=Msa0105370-mRNA-1
chr1_3	exon	13869697	13869774	13869697	ID=Msa0105370-mRNA-1:exon:5443;Parent=Msa0105370-mRNA-1
chr1_3	exon	13870851	13870984	13870851	ID=Msa0105370-mRNA-1:exon:5444;Parent=Msa0105370-mRNA-1
chr1_3	exon	13871141	13871213	13871141	ID=Msa0105370-mRNA-1:exon:5445;Parent=Msa0105370-mRNA-1
chr1_3	exon	13871298	13871375	13871298	ID=Msa0105370-mRNA-1:exon:5446;Parent=Msa0105370-mRNA-1
chr1_3	exon	13871499	13871621	13871499	ID=Msa0105370-mRNA-1:exon:5447;Parent=Msa0105370-mRNA-1
chr1_3	exon	13871819	13871871	13871819	ID=Msa0105370-mRNA-1:exon:5448;Parent=Msa0105370-mRNA-1
chr1_3	exon	13872661	13872870	13872661	ID=Msa0105370-mRNA-1:exon:5449;Parent=Msa0105370-mRNA-1
chr1_3	exon	13873134	13873191	13873134	ID=Msa0105370-mRNA-1:exon:5450;Parent=Msa0105370-mRNA-1
chr1_3	exon	13874421	13874884	13874421	ID=Msa0105370-mRNA-1:exon:5451;Parent=Msa0105370-mRNA-1
chr1_3	five_prime_UTR	13866162	13866297	13866162	ID=Msa0105370-mRNA-1:five_prime_utr;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13866298	13866439	13866298	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13867166	13867428	13867166	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13868293	13868439	13868293	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13868533	13868694	13868533	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13869697	13869774	13869697	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13870851	13870984	13870851	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13871141	13871213	13871141	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13871298	13871375	13871298	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13871499	13871621	13871499	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13871819	13871871	13871819	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13872661	13872870	13872661	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13873134	13873191	13873134	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	CDS	13874421	13874489	13874421	ID=Msa0105370-mRNA-1:cds;Parent=Msa0105370-mRNA-1
chr1_3	three_prime_UTR	13874490	13874884	13874490	ID=Msa0105370-mRNA-1:three_prime_utr;Parent=Msa0105370-mRNA-1

Gene Sequence

>Msa0105370

ATGGTGGGTTTACCTTATGGAATCCAATCTATGCTCAAAGAAGGTCACAAACATCTCTCTGGTCTCGACGAAGCCGTTCTCAAAAACATCGATGCTTGTAACCAACTCTCCACTATCACCCGCACTTCCCTCGGTCCCAATGGGATGAATAAGATGGTTATAAATCATTTGGACAAACTTTTTGTGACAAATGATGCTGCTACCATTGTAAATGAACTTGAAGTGCAACATCCTGCTGCCAAGATTTTGGTTTTGGCTGGGAAAGCTCAACAAGAGGAAATTGGTGATGGCGCTAATTTAACTATTTCTTTTGCCGGCGAGTTACTTCATGGGGCTGAAGAGCTTATTAGGATGGGTTTGCATCCCAGTGAGATTATCAGTGGATATACCAAAGCCATTGCTAAGACTATGGAAATATTGGACGAACTTGTTGAGGAAGGTTCCGACAATATGGATGTCCGTGACAAGGAGCAAGTTATTTCTCGAATGAAAGCTGCTGTTGCTAGCAAGCAATTCGGTCAAGAAGATACTATATGCTCTCTTGTCGCTGATGCATGCATCCAAGTGTGTCCAAAAAACCCTGTAAACTTTAATGTGGACAATGTTCGTGTCGCAAAGCTCTTAGGAGGAGGCTTGCGTAATAGTACAGTTGTTCGGGGAATGGTTCTGAGAAATGATGCTGTTGGTAGTATAAAGAGAATGGAAAAGGCAAAGGTGGCTGTGTTTGCTGGTGGTGTTGATACATCTGCAACTGAAACTAAAGGAACTGTTCTCATACATTCTGCTGAACAGCTAGAAAATTATTCGAAAACTGAAGAGGCTAAAGTAGAAGAGCTCATCAAGGCTGTAGTTGATTCTGGTGCCCAAGTGATTGTAAGCGGAGGAGCAGTAGGAGAGATGGCTTTGCATTTCTGTGAGCGTTATAAGCTTATGGTTCTGAAAATCAGCTCTAAGTTTGAACTGCGTCGATTTTGCCGTACGACTGGTTCTGTAGCTATGTTGAAGCTTAGTCGACCAAACCCAGATGATCTTGGATATGTTGATTCTGTTTCAGTTGAGGAAATTGGTGGTGCAAGGGTGACCATTGTTAAAAATGAAGAAGGTGGCAATTCTGTAGCAACTGTTGTCTTAAGAGGAAGTACTGATAGTATACTTGATGATATTGAAAGAGCAGTTGATGATGGAGTGAACACTTACAAGACTATGTGCAGGGATAGCCGTATTGTGCCTGGAGCTGCAGCAACTGAAATTGAATTGGATCAGTATGCTATAGCAAAATTTGCTGAAAGCTTTGAGATGATTCCTAGAACATTGGCGGAGAATGCTGGGCTAAATGCAATGGAGATTATATCTTCTCTCTACGCAGAACATGCATCAGGAAACACTAAAGTTGGCATTGATTTGGACGAGGGTGTTTGTAAGGATGTCACAACCACACATGTTTGGGATCTCCACATGGCTAAGCTTTTTGCTCTTAAATACGCTGCTGATGCTGCATGCACTGTGCTACGGGTGGACCAGATTATTATGGCGAAACCGGCTGGAGGACCTGGCAAGAGAGAGCAACCTGCTGGCATGGACGAAGACTAA

Protein sequence

>Msa0105370

MVGLPYGIQSMLKEGHKHLSGLDEAVLKNIDACNQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGANLTISFAGELLHGAEELIRMGLHPSEIISGYTKAIAKTMEILDELVEEGSDNMDVRDKEQVISRMKAAVASKQFGQEDTICSLVADACIQVCPKNPVNFNVDNVRVAKLLGGGLRNSTVVRGMVLRNDAVGSIKRMEKAKVAVFAGGVDTSATETKGTVLIHSAEQLENYSKTEEAKVEELIKAVVDSGAQVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLSRPNPDDLGYVDSVSVEEIGGARVTIVKNEEGGNSVATVVLRGSTDSILDDIERAVDDGVNTYKTMCRDSRIVPGAAATEIELDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNTKVGIDLDEGVCKDVTTTHVWDLHMAKLFALKYAADAACTVLRVDQIIMAKPAGGPGKREQPAGMDED*