AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335730 MtrunA17_Chr2g0320884 81.605 299 26 5 1 274 35 329 1.51e-139 395
Msa0335730 MtrunA17_Chr4g0027181 46.914 243 120 4 1 240 5 241 2.42e-53 174
Msa0335730 MtrunA17_Chr7g0265761 41.558 308 127 8 1 274 1 289 5.15e-47 158
Msa0335730 MtrunA17_Chr4g0027191 43.284 201 91 3 2 182 6 203 2.14e-34 127
Msa0335730 MtrunA17_Chr4g0027191 53.125 96 34 4 179 271 282 369 1.56e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335730 AT5G03740.1 39.404 302 144 9 1 273 1 292 5.93e-43 148
Msa0335730 AT5G22650.2 40.411 292 133 9 1 259 1 284 8.24e-34 125
Msa0335730 AT5G22650.1 40.273 293 133 10 1 259 1 285 5.07e-32 120
Msa0335730 AT3G44750.2 53.012 83 36 2 1 83 1 80 1.03e-21 91.3
Msa0335730 AT3G44750.1 53.012 83 36 2 1 83 1 80 1.09e-21 91.3
Msa0335730 AT2G27840.4 42.222 90 47 3 1 88 1 87 2.18e-15 72.4
Msa0335730 AT2G27840.1 42.222 90 47 3 1 88 1 87 3.13e-15 71.6
Msa0335730 AT2G27840.3 29.717 212 91 7 1 194 1 172 6.50e-12 63.5

Find 88 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTTTCCAATGGAGTTT+TGG 0.108547 2_4:+54801069 Msa0335730:exon
TCCTCCAGACTTGGGAGTTT+TGG 0.188316 2_4:-54803794 None:intergenic
GGAGTCTTTCCACCTTTCTT+AGG 0.193593 2_4:-54803760 None:intergenic
GAGAGATGAATGAGTATGTT+AGG 0.212934 2_4:-54801043 None:intergenic
TTGTGATTATATAGTGATTC+AGG 0.214608 2_4:-54800962 None:intergenic
GAAACTTTCTCCTCTGCTTT+TGG 0.244330 2_4:-54802403 None:intergenic
CTAGCGGGGTTAGGAGTAAA+TGG 0.267171 2_4:+54804353 Msa0335730:three_prime_UTR
GAAAGTTTCTGAACCTAAAA+AGG 0.272635 2_4:+54802417 Msa0335730:CDS
TGGGGAACAGAAGCTTGTTT+TGG 0.279640 2_4:+54801584 Msa0335730:CDS
AATCTAAACGCAATGAATTT+AGG 0.301835 2_4:-54804195 None:intergenic
GAATGAGTATGTTAGGGTTT+TGG 0.301954 2_4:-54801036 None:intergenic
GATGAATCTGATGATGAAAA+TGG 0.302701 2_4:+54802526 Msa0335730:CDS
TTTGATTTCTTGGTAGAAAC+TGG 0.315658 2_4:-54803040 None:intergenic
CATTGGGCCTCTTCTTTCCC+TGG 0.324129 2_4:-54803000 None:intergenic
TCTTCATCTTCCTCATCCTT+TGG 0.331069 2_4:-54802487 None:intergenic
TGGAAGCTGTTTGACTTTGA+TGG 0.335428 2_4:+54804160 Msa0335730:three_prime_UTR
TGAATTAGGTGCTGAGGTTA+AGG 0.360277 2_4:+54801347 Msa0335730:intron
TAAATAACCACAGGCTCATT+TGG 0.360368 2_4:-54801552 None:intergenic
TTTAGCAGGTGCAGCATTCT+TGG 0.365068 2_4:-54802446 None:intergenic
TGTGAATAGCAGCTGCTTCA+TGG 0.368584 2_4:-54801401 None:intergenic
AGGACATTCAACTCTGAAAC+TGG 0.374828 2_4:+54803952 Msa0335730:intron
TTATGCCACTCGAGCTATAT+AGG 0.375198 2_4:+54804250 Msa0335730:three_prime_UTR
TGGTTATTTACCTCAAAGTT+GGG 0.376973 2_4:+54801565 Msa0335730:CDS
TTCTGCTCTGTGTTAATCAA+TGG 0.388646 2_4:-54802275 None:intergenic
GCAGCTGCTTCATGGTCATA+TGG 0.391749 2_4:-54801393 None:intergenic
GAGTCTTTCCACCTTTCTTA+GGG 0.394889 2_4:-54803759 None:intergenic
GAAATGAACACTCGCAGCTT+TGG 0.399326 2_4:-54801685 None:intergenic
GCTTCTGTTCCCCAACTTTG+AGG 0.408717 2_4:-54801575 None:intergenic
GGAAGAGGAAGAGGAAATGA+AGG 0.413165 2_4:-54800988 None:intergenic
TCTAGAAACCTAGCGGGGTT+AGG 0.418338 2_4:+54804344 Msa0335730:three_prime_UTR
GTGTGTGGCGTAAGAGGAAG+AGG 0.418887 2_4:-54801003 None:intergenic
GTGAGTATCCTAAGGATGTT+AGG 0.420054 2_4:+54804075 Msa0335730:three_prime_UTR
GTGGTTATTTACCTCAAAGT+TGG 0.423882 2_4:+54801564 Msa0335730:CDS
TCTTGATATTGTCCTTGAAA+AGG 0.424272 2_4:+54801641 Msa0335730:CDS
GATGCCAAAACTCCCAAGTC+TGG 0.432291 2_4:+54803790 Msa0335730:CDS
AGAGATGAATGAGTATGTTA+GGG 0.432353 2_4:-54801042 None:intergenic
AGCTGCTATTCACATTTCTC+AGG 0.433247 2_4:+54801410 Msa0335730:CDS
TTGGTCTCACCAGTCTTCTC+AGG 0.439494 2_4:-54803073 None:intergenic
GTGAGTGTGTGTGGCGTAAG+AGG 0.448064 2_4:-54801009 None:intergenic
TGTGATTATATAGTGATTCA+GGG 0.452751 2_4:-54800961 None:intergenic
AATTGTAGTTTGTCGACAAA+TGG 0.453497 2_4:+54804025 Msa0335730:three_prime_UTR
TTTGTGGTGATGACATGTTT+TGG 0.453561 2_4:+54804140 Msa0335730:three_prime_UTR
GGCGTAAGAGGAAGAGGAAG+AGG 0.454174 2_4:-54800997 None:intergenic
TTGTTAGATGGTAAGAAAGC+TGG 0.456417 2_4:+54803718 Msa0335730:intron
CTCTCTCTCACTGTTTCCAA+TGG 0.457260 2_4:+54801061 Msa0335730:exon
TTAGGTGCTGAGGTTAAGGT+TGG 0.459431 2_4:+54801351 Msa0335730:intron
AGAGAGTCCTCCTCCAGACT+TGG 0.471298 2_4:-54803803 None:intergenic
TTTCCACCTTTCTTAGGGTG+AGG 0.472414 2_4:-54803754 None:intergenic
GTTTCTAGATACTCTCTAAA+GGG 0.492189 2_4:-54804330 None:intergenic
ACTTCACTTAGCAGCATGCT+TGG 0.492494 2_4:-54803995 None:intergenic
GGTTTCTAGATACTCTCTAA+AGG 0.493068 2_4:-54804331 None:intergenic
TCTGCTCTGTGTTAATCAAT+GGG 0.495154 2_4:-54802274 None:intergenic
ACAACCTTCACGTGTTTAGC+AGG 0.509884 2_4:-54802460 None:intergenic
CAGCTGCTTCATGGTCATAT+GGG 0.518931 2_4:-54801392 None:intergenic
GACAGACACCTAACATCCTT+AGG 0.519803 2_4:-54804083 None:intergenic
CATTTACTCCTAACCCCGCT+AGG 0.524439 2_4:-54804352 None:intergenic
GGAAGAGACTCCTGTGAAGA+AGG 0.527324 2_4:+54802883 Msa0335730:CDS
TGTGCCATTACCTTCTTCAC+AGG 0.535491 2_4:-54802893 None:intergenic
GTTATTGTTTAGGTTGCACT+TGG 0.550722 2_4:+54801510 Msa0335730:intron
TTTGGAAGTGTGAGTGTGTG+TGG 0.557944 2_4:-54801018 None:intergenic
TGAGAGTGATGAGGATGATG+AGG 0.559141 2_4:+54802862 Msa0335730:CDS
TAGCGGGGTTAGGAGTAAAT+GGG 0.559555 2_4:+54804354 Msa0335730:three_prime_UTR
GAGAGTCCTCCTCCAGACTT+GGG 0.565423 2_4:-54803802 None:intergenic
AGAGTATCTAGAAACCTAGC+GGG 0.567677 2_4:+54804338 Msa0335730:three_prime_UTR
AATGCTACTCCTGAGAAGAC+TGG 0.569825 2_4:+54803064 Msa0335730:CDS
AGGTTACCCCAAAACTCCAT+TGG 0.575655 2_4:-54801077 None:intergenic
GCAACTCCTCACCCTAAGAA+AGG 0.575686 2_4:+54803748 Msa0335730:CDS
GGTTGTTGATCCAAAGGATG+AGG 0.576616 2_4:+54802477 Msa0335730:CDS
CGTGAAGGTTGTTGATCCAA+AGG 0.578956 2_4:+54802471 Msa0335730:CDS
AAAACTCCCAAGTCTGGAGG+AGG 0.583660 2_4:+54803796 Msa0335730:CDS
GTAGTATGGTGAGTATCCTA+AGG 0.595850 2_4:+54804067 Msa0335730:three_prime_UTR
TTGATTAACACAGAGCAGAA+TGG 0.601793 2_4:+54802278 Msa0335730:CDS
GAAGAGGAAGAGGAAATGAA+GGG 0.604925 2_4:-54800987 None:intergenic
GGTTATTTACCTCAAAGTTG+GGG 0.606552 2_4:+54801566 Msa0335730:CDS
AAAACCAGAACCAAAAGCAG+AGG 0.625041 2_4:+54802393 Msa0335730:CDS
TGGACTGCAACAACATAGCA+AGG 0.629185 2_4:+54803972 Msa0335730:CDS
AATAGCCTATATAGCTCGAG+TGG 0.629986 2_4:-54804255 None:intergenic
ACTCCTCACCCTAAGAAAGG+TGG 0.633029 2_4:+54803751 Msa0335730:CDS
AAATGGAAGCTCTGATGATG+AGG 0.649458 2_4:+54802543 Msa0335730:CDS
TGCACCTGCTAAACACGTGA+AGG 0.650932 2_4:+54802456 Msa0335730:CDS
GCCAAAACTCCCAAGTCTGG+AGG 0.652249 2_4:+54803793 Msa0335730:CDS
ACTTTGAGGTAAATAACCAC+AGG 0.655718 2_4:-54801561 None:intergenic
AGACAAACCAAATGAGCCTG+TGG 0.663535 2_4:+54801545 Msa0335730:CDS
ACAATATCAAGAGAAATCTG+AGG 0.664546 2_4:-54801630 None:intergenic
AGATGATGATGAGAGTGATG+AGG 0.674103 2_4:+54802853 Msa0335730:CDS
GAGAGTATCTAGAAACCTAG+CGG 0.695129 2_4:+54804337 Msa0335730:three_prime_UTR
GAGTATCTAGAAACCTAGCG+GGG 0.735925 2_4:+54804339 Msa0335730:three_prime_UTR
AGGTTGACCAGGGAAAGAAG+AGG 0.740019 2_4:+54802993 Msa0335730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAGTTTACATTTTATAT+TGG + chr2_4:54802069-54802088 Msa0335730:intron 10.0%
!!! ATTTTGTGATAAATATATAT+TGG + chr2_4:54803106-54803125 Msa0335730:intron 10.0%
!!! ATATATTTATTACTTTTAGA+TGG + chr2_4:54803868-54803887 Msa0335730:intron 10.0%
!!! TATATTTATTACTTTTAGAT+GGG + chr2_4:54803869-54803888 Msa0335730:intron 10.0%
!!! TTATACTATTATTTTTTAAG+AGG + chr2_4:54804283-54804302 Msa0335730:three_prime_UTR 10.0%
!! AACTATATAATAACAAATCA+AGG - chr2_4:54801747-54801766 None:intergenic 15.0%
!!! TTTTAGTTGATATTTTTCTA+AGG + chr2_4:54801776-54801795 Msa0335730:intron 15.0%
!! TATAATTATTATGGTTACTA+CGG + chr2_4:54802941-54802960 Msa0335730:intron 15.0%
!! TTAAATTGTGTTAGATATTA+AGG + chr2_4:54803540-54803559 Msa0335730:intron 15.0%
!! AAAGGATATATATCTATATA+TGG - chr2_4:54803667-54803686 None:intergenic 15.0%
!! AAAGTAATAAATATATGCTT+CGG - chr2_4:54803864-54803883 None:intergenic 15.0%
!! ATCAAAAATTAAGAGTAGTT+CGG - chr2_4:54801224-54801243 None:intergenic 20.0%
!!! AAATAACCATTGTTCTTTTT+AGG + chr2_4:54802370-54802389 Msa0335730:intron 20.0%
!!! TTAATCAATGTTTTGTTTAG+TGG + chr2_4:54802569-54802588 Msa0335730:intron 20.0%
!!! TTTATGTTGATAATTGTAGA+TGG + chr2_4:54802814-54802833 Msa0335730:intron 20.0%
!! TCACAAAATATATTACAACT+TGG - chr2_4:54803095-54803114 None:intergenic 20.0%
!!! TTTTTTTTTGCTTGTTGATT+CGG + chr2_4:54803137-54803156 Msa0335730:intron 20.0%
!! CAAACAATGTTTCAATTTAA+GGG - chr2_4:54803591-54803610 None:intergenic 20.0%
!! TCAAACAATGTTTCAATTTA+AGG - chr2_4:54803592-54803611 None:intergenic 20.0%
!! AAAAATTTAAACGCGAATTA+AGG - chr2_4:54803700-54803719 None:intergenic 20.0%
!! AAGTAATAAATATATGCTTC+GGG - chr2_4:54803863-54803882 None:intergenic 20.0%
!!! ATTGTTTTTCATATGTAGTA+TGG + chr2_4:54804053-54804072 Msa0335730:three_prime_UTR 20.0%
! TGTGATTATATAGTGATTCA+GGG - chr2_4:54800964-54800983 None:intergenic 25.0%
! TTGTGATTATATAGTGATTC+AGG - chr2_4:54800965-54800984 None:intergenic 25.0%
!!! TATACGTTGGTTTTTGAATT+AGG + chr2_4:54801333-54801352 Msa0335730:intron 25.0%
! TTGTAGGTTTACTAAATTTC+TGG + chr2_4:54801484-54801503 Msa0335730:intron 25.0%
!!! TTTCTGGTTTGTTATTGTTT+AGG + chr2_4:54801500-54801519 Msa0335730:intron 25.0%
! ATTTAGATAACAGATCTGTA+AGG - chr2_4:54802034-54802053 None:intergenic 25.0%
!!! TTGTCATGCAATTGTTTTTA+AGG + chr2_4:54802174-54802193 Msa0335730:intron 25.0%
!!! TTGGTCTGATTTTTTTTTGT+TGG + chr2_4:54802314-54802333 Msa0335730:intron 25.0%
!!! TCTGATTTTTTTTTGTTGGT+TGG + chr2_4:54802318-54802337 Msa0335730:intron 25.0%
!!! CTGATTTTTTTTTGTTGGTT+GGG + chr2_4:54802319-54802338 Msa0335730:intron 25.0%
! TTTCAACATTGTGTATGTAT+TGG - chr2_4:54802665-54802684 None:intergenic 25.0%
!! ACATTTGTTAAATGTGCTAT+TGG + chr2_4:54802691-54802710 Msa0335730:intron 25.0%
!! CATTTGTTAAATGTGCTATT+GGG + chr2_4:54802692-54802711 Msa0335730:intron 25.0%
! TTATTTCGTGTTCTCAATTT+AGG + chr2_4:54802718-54802737 Msa0335730:intron 25.0%
! TATTTCGTGTTCTCAATTTA+GGG + chr2_4:54802719-54802738 Msa0335730:intron 25.0%
!!! ATAATCGTCTTTTTGTTTGA+AGG + chr2_4:54802973-54802992 Msa0335730:intron 25.0%
!!! AGTAGCATTTTTTGATTTCT+TGG - chr2_4:54803053-54803072 None:intergenic 25.0%
! ACAATTTAACAACAGTTAAC+TGG - chr2_4:54803272-54803291 None:intergenic 25.0%
!! GCGTTTAAATTTTTGTTAGA+TGG + chr2_4:54803706-54803725 Msa0335730:intron 25.0%
! AATCTAAACGCAATGAATTT+AGG - chr2_4:54804198-54804217 None:intergenic 25.0%
! TTAGCAACACTTCAAAAAAA+TGG - chr2_4:54804389-54804408 None:intergenic 25.0%
ATAGTGATTCAGGGAAAAAA+GGG - chr2_4:54800955-54800974 None:intergenic 30.0%
TATAGTGATTCAGGGAAAAA+AGG - chr2_4:54800956-54800975 None:intergenic 30.0%
AGAGATGAATGAGTATGTTA+GGG - chr2_4:54801045-54801064 None:intergenic 30.0%
!! AACTTGTTTTCACGTGTATT+AGG + chr2_4:54801289-54801308 Msa0335730:intron 30.0%
!! ACTTGTTTTCACGTGTATTA+GGG + chr2_4:54801290-54801309 Msa0335730:intron 30.0%
! CATTGTTTTCTGATATACGT+TGG + chr2_4:54801320-54801339 Msa0335730:intron 30.0%
TATTCACATTTCTCAGGTTA+GGG + chr2_4:54801416-54801435 Msa0335730:intron 30.0%
!! GTTCTATGTTGTGTTTTTGT+AGG + chr2_4:54801468-54801487 Msa0335730:intron 30.0%
TGGTTATTTACCTCAAAGTT+GGG + chr2_4:54801565-54801584 Msa0335730:CDS 30.0%
ACAATATCAAGAGAAATCTG+AGG - chr2_4:54801633-54801652 None:intergenic 30.0%
TCTTGATATTGTCCTTGAAA+AGG + chr2_4:54801641-54801660 Msa0335730:CDS 30.0%
! ATAGCTCAAATTCCTTTTCA+AGG - chr2_4:54801656-54801675 None:intergenic 30.0%
GATGACAAATAGACTAATCT+GGG - chr2_4:54801853-54801872 None:intergenic 30.0%
ATGATGTCAATATACACGTT+AGG - chr2_4:54801903-54801922 None:intergenic 30.0%
CCAAAACACATCAATAGTTA+AGG - chr2_4:54802111-54802130 None:intergenic 30.0%
! CCTTAACTATTGATGTGTTT+TGG + chr2_4:54802108-54802127 Msa0335730:intron 30.0%
ATTGCATGACAAATTTCAGA+GGG - chr2_4:54802166-54802185 None:intergenic 30.0%
AATTGCATGACAAATTTCAG+AGG - chr2_4:54802167-54802186 None:intergenic 30.0%
AGGTTAGATTAAGATTGTGT+TGG + chr2_4:54802194-54802213 Msa0335730:intron 30.0%
CAAAAAAAAATCAGACCAAG+AGG - chr2_4:54802313-54802332 None:intergenic 30.0%
! GGTTTTCCTAAAAAGAACAA+TGG - chr2_4:54802379-54802398 None:intergenic 30.0%
GAAAGTTTCTGAACCTAAAA+AGG + chr2_4:54802417-54802436 Msa0335730:CDS 30.0%
! GATGAATCTGATGATGAAAA+TGG + chr2_4:54802526-54802545 Msa0335730:CDS 30.0%
!! TATAAGTTGTCCATTTTTGC+TGG + chr2_4:54802600-54802619 Msa0335730:intron 30.0%
!!! GTTTTTGAAGCAGATTCATT+GGG - chr2_4:54803019-54803038 None:intergenic 30.0%
!!! AGTTTTTGAAGCAGATTCAT+TGG - chr2_4:54803020-54803039 None:intergenic 30.0%
! TTTGATTTCTTGGTAGAAAC+TGG - chr2_4:54803043-54803062 None:intergenic 30.0%
! TAGTTCTTGCATTTTGTTGA+TGG + chr2_4:54803189-54803208 Msa0335730:intron 30.0%
AATGTTTCAATTTAAGGGTG+GGG - chr2_4:54803586-54803605 None:intergenic 30.0%
CAATGTTTCAATTTAAGGGT+GGG - chr2_4:54803587-54803606 None:intergenic 30.0%
ACAATGTTTCAATTTAAGGG+TGG - chr2_4:54803588-54803607 None:intergenic 30.0%
AATTAAGGATGTGCAACAAA+AGG - chr2_4:54803685-54803704 None:intergenic 30.0%
!! GGTTGTGATTGATTTTTAGA+TGG + chr2_4:54803890-54803909 Msa0335730:intron 30.0%
!! TTTTTGTTGTCTTCATTACC+AGG + chr2_4:54803932-54803951 Msa0335730:intron 30.0%
! AATTGTAGTTTGTCGACAAA+TGG + chr2_4:54804025-54804044 Msa0335730:three_prime_UTR 30.0%
GTTCACTAGATCAAAAATCA+AGG - chr2_4:54804108-54804127 None:intergenic 30.0%
! TTTTTGATCTAGTGAACATG+AGG + chr2_4:54804111-54804130 Msa0335730:three_prime_UTR 30.0%
! TTTTGATCTAGTGAACATGA+GGG + chr2_4:54804112-54804131 Msa0335730:three_prime_UTR 30.0%
! GTTTCTAGATACTCTCTAAA+GGG - chr2_4:54804333-54804352 None:intergenic 30.0%
! AAGGGTTTTTGCAAAAGCTA+GGG - chr2_4:54800937-54800956 None:intergenic 35.0%
! AAAGGGTTTTTGCAAAAGCT+AGG - chr2_4:54800938-54800957 None:intergenic 35.0%
! GAATGAGTATGTTAGGGTTT+TGG - chr2_4:54801039-54801058 None:intergenic 35.0%
GAGAGATGAATGAGTATGTT+AGG - chr2_4:54801046-54801065 None:intergenic 35.0%
! ACTGTTTCCAATGGAGTTTT+GGG + chr2_4:54801070-54801089 Msa0335730:exon 35.0%
ATAACGAAAGGAGAAAGATG+AGG - chr2_4:54801100-54801119 None:intergenic 35.0%
GAAGAAAGGTAGATAACGAA+AGG - chr2_4:54801112-54801131 None:intergenic 35.0%
! TTTTCACGTGTATTAGGGTT+TGG + chr2_4:54801295-54801314 Msa0335730:intron 35.0%
CTATTCACATTTCTCAGGTT+AGG + chr2_4:54801415-54801434 Msa0335730:intron 35.0%
!! GTTATTGTTTAGGTTGCACT+TGG + chr2_4:54801510-54801529 Msa0335730:intron 35.0%
TAAATAACCACAGGCTCATT+TGG - chr2_4:54801555-54801574 None:intergenic 35.0%
!! ACTTTGAGGTAAATAACCAC+AGG - chr2_4:54801564-54801583 None:intergenic 35.0%
GTGGTTATTTACCTCAAAGT+TGG + chr2_4:54801564-54801583 Msa0335730:CDS 35.0%
GGTTATTTACCTCAAAGTTG+GGG + chr2_4:54801566-54801585 Msa0335730:CDS 35.0%
! AGGAATTTTGTCCCTGTTTA+GGG - chr2_4:54801613-54801632 None:intergenic 35.0%
GGATGACAAATAGACTAATC+TGG - chr2_4:54801854-54801873 None:intergenic 35.0%
ATTGCAACAATTGCAACACT+AGG - chr2_4:54801875-54801894 None:intergenic 35.0%
!! GTTTAGTTTGTTGCTATCCT+AGG + chr2_4:54802006-54802025 Msa0335730:intron 35.0%
TCTGCTCTGTGTTAATCAAT+GGG - chr2_4:54802277-54802296 None:intergenic 35.0%
TTCTGCTCTGTGTTAATCAA+TGG - chr2_4:54802278-54802297 None:intergenic 35.0%
TTGATTAACACAGAGCAGAA+TGG + chr2_4:54802278-54802297 Msa0335730:CDS 35.0%
GACATCATTACCAGCAAAAA+TGG - chr2_4:54802613-54802632 None:intergenic 35.0%
ACATGCATAATCAAGACTGA+AGG - chr2_4:54802635-54802654 None:intergenic 35.0%
AATAAATGTTGACCTCAGAC+AGG - chr2_4:54802788-54802807 None:intergenic 35.0%
!! TTTTTGTTTGAAGGTTGACC+AGG + chr2_4:54802982-54803001 Msa0335730:intron 35.0%
!! TTTTGTTTGAAGGTTGACCA+GGG + chr2_4:54802983-54803002 Msa0335730:intron 35.0%
!! TTGTTGATTCGGTGTTAGAT+CGG + chr2_4:54803148-54803167 Msa0335730:intron 35.0%
AATGCAAGAACTAGTGCAAA+TGG - chr2_4:54803182-54803201 None:intergenic 35.0%
!! TGCATTTTGTTGATGGATCA+TGG + chr2_4:54803196-54803215 Msa0335730:intron 35.0%
GTCAATGCTGAAATTGTAGT+TGG + chr2_4:54803313-54803332 Msa0335730:intron 35.0%
!! ATTGTAGTTGGTTTGCATCA+TGG + chr2_4:54803325-54803344 Msa0335730:intron 35.0%
!! AATGTAGCTTGTTTGCATCA+AGG + chr2_4:54803449-54803468 Msa0335730:intron 35.0%
TTGTTAGATGGTAAGAAAGC+TGG + chr2_4:54803718-54803737 Msa0335730:intron 35.0%
!! TTTGTGGTGATGACATGTTT+TGG + chr2_4:54804140-54804159 Msa0335730:three_prime_UTR 35.0%
! GGTTTCTAGATACTCTCTAA+AGG - chr2_4:54804334-54804353 None:intergenic 35.0%
! TGCAAAAGCTAGGGTTTTTG+CGG - chr2_4:54800928-54800947 None:intergenic 40.0%
GAAGAGGAAGAGGAAATGAA+GGG - chr2_4:54800990-54801009 None:intergenic 40.0%
! CACTGTTTCCAATGGAGTTT+TGG + chr2_4:54801069-54801088 Msa0335730:exon 40.0%
! CTGTTTCCAATGGAGTTTTG+GGG + chr2_4:54801071-54801090 Msa0335730:exon 40.0%
CATCGTTATTCAGCGAAGAA+AGG - chr2_4:54801126-54801145 None:intergenic 40.0%
!! GGTTTTTGAATTAGGTGCTG+AGG + chr2_4:54801341-54801360 Msa0335730:intron 40.0%
!! TGAATTAGGTGCTGAGGTTA+AGG + chr2_4:54801347-54801366 Msa0335730:intron 40.0%
AGCTGCTATTCACATTTCTC+AGG + chr2_4:54801410-54801429 Msa0335730:CDS 40.0%
!!! TTGTTTTGGGAACCCTAAAC+AGG + chr2_4:54801598-54801617 Msa0335730:CDS 40.0%
!!! TGTTTTGGGAACCCTAAACA+GGG + chr2_4:54801599-54801618 Msa0335730:CDS 40.0%
! GAGGAATTTTGTCCCTGTTT+AGG - chr2_4:54801614-54801633 None:intergenic 40.0%
TAACACAGAGCAGAATGGTA+TGG + chr2_4:54802283-54802302 Msa0335730:intron 40.0%
AACACAGAGCAGAATGGTAT+GGG + chr2_4:54802284-54802303 Msa0335730:intron 40.0%
AAAACCAGAACCAAAAGCAG+AGG + chr2_4:54802393-54802412 Msa0335730:CDS 40.0%
! GAAACTTTCTCCTCTGCTTT+TGG - chr2_4:54802406-54802425 None:intergenic 40.0%
! TTCTTGGCATCAGCCTTTTT+AGG - chr2_4:54802433-54802452 None:intergenic 40.0%
TCTTCATCTTCCTCATCCTT+TGG - chr2_4:54802490-54802509 None:intergenic 40.0%
! AAATGGAAGCTCTGATGATG+AGG + chr2_4:54802543-54802562 Msa0335730:CDS 40.0%
GTCTTGATTATGCATGTCTG+AGG + chr2_4:54802638-54802657 Msa0335730:intron 40.0%
! AGATGATGATGAGAGTGATG+AGG + chr2_4:54802853-54802872 Msa0335730:CDS 40.0%
GTCAGACATGCTGAAATTTG+AGG + chr2_4:54803621-54803640 Msa0335730:intron 40.0%
GAGTCTTTCCACCTTTCTTA+GGG - chr2_4:54803762-54803781 None:intergenic 40.0%
AGTTTCAGAGTTGAATGTCC+TGG - chr2_4:54803953-54803972 None:intergenic 40.0%
!! AGGACATTCAACTCTGAAAC+TGG + chr2_4:54803952-54803971 Msa0335730:intron 40.0%
GTAGTATGGTGAGTATCCTA+AGG + chr2_4:54804067-54804086 Msa0335730:three_prime_UTR 40.0%
GTGAGTATCCTAAGGATGTT+AGG + chr2_4:54804075-54804094 Msa0335730:three_prime_UTR 40.0%
! GAACATGAGGGAAAGTTTTG+TGG + chr2_4:54804124-54804143 Msa0335730:three_prime_UTR 40.0%
! TGGAAGCTGTTTGACTTTGA+TGG + chr2_4:54804160-54804179 Msa0335730:three_prime_UTR 40.0%
TTATGCCACTCGAGCTATAT+AGG + chr2_4:54804250-54804269 Msa0335730:three_prime_UTR 40.0%
AATAGCCTATATAGCTCGAG+TGG - chr2_4:54804258-54804277 None:intergenic 40.0%
!! GAGAGTATCTAGAAACCTAG+CGG + chr2_4:54804337-54804356 Msa0335730:three_prime_UTR 40.0%
! AGAGTATCTAGAAACCTAGC+GGG + chr2_4:54804338-54804357 Msa0335730:three_prime_UTR 40.0%
GGAAGAGGAAGAGGAAATGA+AGG - chr2_4:54800991-54801010 None:intergenic 45.0%
! TTTGGAAGTGTGAGTGTGTG+TGG - chr2_4:54801021-54801040 None:intergenic 45.0%
CTCTCTCTCACTGTTTCCAA+TGG + chr2_4:54801061-54801080 Msa0335730:exon 45.0%
AGGTTACCCCAAAACTCCAT+TGG - chr2_4:54801080-54801099 None:intergenic 45.0%
!! TTAGGTGCTGAGGTTAAGGT+TGG + chr2_4:54801351-54801370 Msa0335730:intron 45.0%
CAGCTGCTTCATGGTCATAT+GGG - chr2_4:54801395-54801414 None:intergenic 45.0%
TGTGAATAGCAGCTGCTTCA+TGG - chr2_4:54801404-54801423 None:intergenic 45.0%
AGACAAACCAAATGAGCCTG+TGG + chr2_4:54801545-54801564 Msa0335730:CDS 45.0%
!! TGGGGAACAGAAGCTTGTTT+TGG + chr2_4:54801584-54801603 Msa0335730:CDS 45.0%
!! GGGGAACAGAAGCTTGTTTT+GGG + chr2_4:54801585-54801604 Msa0335730:CDS 45.0%
GAAATGAACACTCGCAGCTT+TGG - chr2_4:54801688-54801707 None:intergenic 45.0%
! AACAGATCTGTAAGGCACCT+AGG - chr2_4:54802026-54802045 None:intergenic 45.0%
GAATGGTATGGGTTTCCTCT+TGG + chr2_4:54802295-54802314 Msa0335730:intron 45.0%
!!! TTCTCCTCTGCTTTTGGTTC+TGG - chr2_4:54802400-54802419 None:intergenic 45.0%
TTTAGCAGGTGCAGCATTCT+TGG - chr2_4:54802449-54802468 None:intergenic 45.0%
ACAACCTTCACGTGTTTAGC+AGG - chr2_4:54802463-54802482 None:intergenic 45.0%
CGTGAAGGTTGTTGATCCAA+AGG + chr2_4:54802471-54802490 Msa0335730:CDS 45.0%
GGTTGTTGATCCAAAGGATG+AGG + chr2_4:54802477-54802496 Msa0335730:CDS 45.0%
TGAGAGTGATGAGGATGATG+AGG + chr2_4:54802862-54802881 Msa0335730:CDS 45.0%
GACTCCTGTGAAGAAGGTAA+TGG + chr2_4:54802889-54802908 Msa0335730:intron 45.0%
! TGTGCCATTACCTTCTTCAC+AGG - chr2_4:54802896-54802915 None:intergenic 45.0%
AATGCTACTCCTGAGAAGAC+TGG + chr2_4:54803064-54803083 Msa0335730:CDS 45.0%
TTTCCACCTTTCTTAGGGTG+AGG - chr2_4:54803757-54803776 None:intergenic 45.0%
GGAGTCTTTCCACCTTTCTT+AGG - chr2_4:54803763-54803782 None:intergenic 45.0%
!! GGAGTTTTGGCATCACTGTT+AGG - chr2_4:54803784-54803803 None:intergenic 45.0%
TGGACTGCAACAACATAGCA+AGG + chr2_4:54803972-54803991 Msa0335730:CDS 45.0%
ACTTCACTTAGCAGCATGCT+TGG - chr2_4:54803998-54804017 None:intergenic 45.0%
GACAGACACCTAACATCCTT+AGG - chr2_4:54804086-54804105 None:intergenic 45.0%
GAGTATCTAGAAACCTAGCG+GGG + chr2_4:54804339-54804358 Msa0335730:three_prime_UTR 45.0%
TAGCGGGGTTAGGAGTAAAT+GGG + chr2_4:54804354-54804373 Msa0335730:three_prime_UTR 45.0%
!!! TTTATTTGTTATAATTATTA+TGG + chr2_4:54802932-54802951 Msa0335730:intron 5.0%
GCAGCTGCTTCATGGTCATA+TGG - chr2_4:54801396-54801415 None:intergenic 50.0%
GCTTCTGTTCCCCAACTTTG+AGG - chr2_4:54801578-54801597 None:intergenic 50.0%
GCTGCGAGTGTTCATTTCTG+TGG + chr2_4:54801690-54801709 Msa0335730:intron 50.0%
!!! TGTTTTGGCTTGCACGAGTG+AGG + chr2_4:54802123-54802142 Msa0335730:intron 50.0%
ACGAGTGAGGAAGGTGAAAC+TGG + chr2_4:54802136-54802155 Msa0335730:intron 50.0%
TGCACCTGCTAAACACGTGA+AGG + chr2_4:54802456-54802475 Msa0335730:CDS 50.0%
GTCCTCTTTATGCCTGTCTG+AGG + chr2_4:54802773-54802792 Msa0335730:intron 50.0%
GACCTCAGACAGGCATAAAG+AGG - chr2_4:54802778-54802797 None:intergenic 50.0%
GGAAGAGACTCCTGTGAAGA+AGG + chr2_4:54802883-54802902 Msa0335730:CDS 50.0%
AGGTTGACCAGGGAAAGAAG+AGG + chr2_4:54802993-54803012 Msa0335730:intron 50.0%
TTGGTCTCACCAGTCTTCTC+AGG - chr2_4:54803076-54803095 None:intergenic 50.0%
GCAACTCCTCACCCTAAGAA+AGG + chr2_4:54803748-54803767 Msa0335730:CDS 50.0%
ACTCCTCACCCTAAGAAAGG+TGG + chr2_4:54803751-54803770 Msa0335730:CDS 50.0%
GATGCCAAAACTCCCAAGTC+TGG + chr2_4:54803790-54803809 Msa0335730:CDS 50.0%
! TCCTCCAGACTTGGGAGTTT+TGG - chr2_4:54803797-54803816 None:intergenic 50.0%
AAAACTCCCAAGTCTGGAGG+AGG + chr2_4:54803796-54803815 Msa0335730:CDS 50.0%
TCTAGAAACCTAGCGGGGTT+AGG + chr2_4:54804344-54804363 Msa0335730:three_prime_UTR 50.0%
CATTTACTCCTAACCCCGCT+AGG - chr2_4:54804355-54804374 None:intergenic 50.0%
CTAGCGGGGTTAGGAGTAAA+TGG + chr2_4:54804353-54804372 Msa0335730:three_prime_UTR 50.0%
GGCGTAAGAGGAAGAGGAAG+AGG - chr2_4:54801000-54801019 None:intergenic 55.0%
GTGTGTGGCGTAAGAGGAAG+AGG - chr2_4:54801006-54801025 None:intergenic 55.0%
GTGAGTGTGTGTGGCGTAAG+AGG - chr2_4:54801012-54801031 None:intergenic 55.0%
!! TTGGCTTGCACGAGTGAGGA+AGG + chr2_4:54802127-54802146 Msa0335730:intron 55.0%
CATTGGGCCTCTTCTTTCCC+TGG - chr2_4:54803003-54803022 None:intergenic 55.0%
GCCAAAACTCCCAAGTCTGG+AGG + chr2_4:54803793-54803812 Msa0335730:CDS 55.0%
GAGAGTCCTCCTCCAGACTT+GGG - chr2_4:54803805-54803824 None:intergenic 55.0%
AGAGAGTCCTCCTCCAGACT+TGG - chr2_4:54803806-54803825 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54800919 54804418 54800919 ID=Msa0335730;Name=Msa0335730
chr2_4 mRNA 54800919 54804418 54800919 ID=Msa0335730-mRNA-1;Parent=Msa0335730;Name=Msa0335730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=161|0.87|0.88|1|1|1|9|404|274
chr2_4 exon 54800919 54801092 54800919 ID=Msa0335730-mRNA-1:exon:16604;Parent=Msa0335730-mRNA-1
chr2_4 exon 54801355 54801431 54801355 ID=Msa0335730-mRNA-1:exon:16605;Parent=Msa0335730-mRNA-1
chr2_4 exon 54801522 54801696 54801522 ID=Msa0335730-mRNA-1:exon:16606;Parent=Msa0335730-mRNA-1
chr2_4 exon 54802255 54802299 54802255 ID=Msa0335730-mRNA-1:exon:16607;Parent=Msa0335730-mRNA-1
chr2_4 exon 54802392 54802564 54802392 ID=Msa0335730-mRNA-1:exon:16608;Parent=Msa0335730-mRNA-1
chr2_4 exon 54802833 54802904 54802833 ID=Msa0335730-mRNA-1:exon:16609;Parent=Msa0335730-mRNA-1
chr2_4 exon 54802995 54803085 54802995 ID=Msa0335730-mRNA-1:exon:16610;Parent=Msa0335730-mRNA-1
chr2_4 exon 54803725 54803842 54803725 ID=Msa0335730-mRNA-1:exon:16611;Parent=Msa0335730-mRNA-1
chr2_4 exon 54803954 54804418 54803954 ID=Msa0335730-mRNA-1:exon:16612;Parent=Msa0335730-mRNA-1
chr2_4 five_prime_UTR 54800919 54801079 54800919 ID=Msa0335730-mRNA-1:five_prime_utr;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54801080 54801092 54801080 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54801355 54801431 54801355 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54801522 54801696 54801522 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54802255 54802299 54802255 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54802392 54802564 54802392 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54802833 54802904 54802833 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54802995 54803085 54802995 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54803725 54803842 54803725 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 CDS 54803954 54804014 54803954 ID=Msa0335730-mRNA-1:cds;Parent=Msa0335730-mRNA-1
chr2_4 three_prime_UTR 54804015 54804418 54804015 ID=Msa0335730-mRNA-1:three_prime_utr;Parent=Msa0335730-mRNA-1
Gene Sequence

>Msa0335730

ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGAGAAACTATCAAGATTGACCCATATGACCATGAAGCAGCTGCTATTCACATTTCTCAGGTTGCACTTGGTGAAGCAAAGAAAGACAAACCAAATGAGCCTGTGGTTATTTACCTCAAAGTTGGGGAACAGAAGCTTGTTTTGGGAACCCTAAACAGGGACAAAATTCCTCAGATTTCTCTTGATATTGTCCTTGAAAAGGAATTTGAGCTATCTCACAATTCCAAAGCTGCGAATAGTGAAGATGAAGACATCCCATTGATTAACACAGAGCAGAATGGAAAACCAGAACCAAAAGCAGAGGAGAAAGTTTCTGAACCTAAAAAGGCTGATGCCAAGAATGCTGCACCTGCTAAACACGTGAAGGTTGTTGATCCAAAGGATGAGGAAGATGAAGATTCTGATGATGATTCTGATGAATCTGATGATGAAAATGGAAGCTCTGATGATGAGATGGAGAATGCTGATAGTGAAGATGATGATGAGAGTGATGAGGATGATGAGGAAGAGACTCCTGTGAAGAAGGTTGACCAGGGAAAGAAGAGGCCCAATGAATCTGCTTCAAAAACTCCAGTTTCTACCAAGAAATCAAAAAATGCTACTCCTGAGAAGACTGATGGTAAGAAAGCTGGACATACAGCAACTCCTCACCCTAAGAAAGGTGGAAAGACTCCTAACAGTGATGCCAAAACTCCCAAGTCTGGAGGAGGACTCTCTTGCAGTAGTTGCAGCAAGACATTCAACTCTGAAACTGGACTGCAACAACATAGCAAGGCCAAGCATGCTGCTAAGTGA

Protein sequence

>Msa0335730

MEFWGAEVKVGETIKIDPYDHEAAAIHISQVALGEAKKDKPNEPVVIYLKVGEQKLVLGTLNRDKIPQISLDIVLEKEFELSHNSKAANSEDEDIPLINTEQNGKPEPKAEEKVSEPKKADAKNAAPAKHVKVVDPKDEEDEDSDDDSDESDDENGSSDDEMENADSEDDDESDEDDEEETPVKKVDQGKKRPNESASKTPVSTKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNSDAKTPKSGGGLSCSSCSKTFNSETGLQQHSKAKHAAK*