Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472550 | XP_003602435.1 | 96.154 | 416 | 12 | 2 | 1 | 412 | 1 | 416 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472550 | sp|Q9FLU1|BIN4_ARATH | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.49e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472550 | G7J9P4 | 96.154 | 416 | 12 | 2 | 1 | 412 | 1 | 416 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0472550 | 0.800072 | 1.710900e-48 | -8.615850e-47 |
| Msa0032090 | Msa0472550 | 0.836887 | 7.189327e-57 | -8.615850e-47 |
| Msa0032430 | Msa0472550 | 0.839639 | 1.405003e-57 | -8.615850e-47 |
| Msa0040690 | Msa0472550 | 0.814914 | 1.208750e-51 | -8.615850e-47 |
| Msa0061290 | Msa0472550 | 0.821391 | 4.140738e-53 | -8.615850e-47 |
| Msa0070700 | Msa0472550 | 0.804732 | 1.875508e-49 | -8.615850e-47 |
| Msa0079380 | Msa0472550 | 0.835963 | 1.235733e-56 | -8.615850e-47 |
| Msa0115080 | Msa0472550 | 0.821868 | 3.211664e-53 | -8.615850e-47 |
| Msa0118590 | Msa0472550 | 0.809738 | 1.631389e-50 | -8.615850e-47 |
| Msa0124060 | Msa0472550 | 0.802918 | 4.465480e-49 | -8.615850e-47 |
| Msa0127050 | Msa0472550 | 0.800773 | 1.231558e-48 | -8.615850e-47 |
| Msa0144370 | Msa0472550 | 0.812332 | 4.470919e-51 | -8.615850e-47 |
| Msa0152350 | Msa0472550 | 0.814877 | 1.231797e-51 | -8.615850e-47 |
| Msa0170200 | Msa0472550 | 0.810148 | 1.331241e-50 | -8.615850e-47 |
| Msa0172070 | Msa0472550 | 0.836034 | 1.185433e-56 | -8.615850e-47 |
| Msa0449210 | Msa0472550 | 0.815759 | 7.842103e-52 | -8.615850e-47 |
| Msa0467490 | Msa0472550 | 0.801365 | 9.319745e-49 | -8.615850e-47 |
| Msa0472550 | Msa0472620 | 0.971308 | 5.841331e-133 | -8.615850e-47 |
| Msa0472550 | Msa0511370 | 0.801745 | 7.787185e-49 | -8.615850e-47 |
| Msa0472550 | Msa0517070 | 0.915793 | 3.857796e-85 | -8.615850e-47 |
| Msa0472550 | Msa0532070 | 0.816109 | 6.550874e-52 | -8.615850e-47 |
| Msa0472550 | Msa0554920 | 0.808297 | 3.319913e-50 | -8.615850e-47 |
| Msa0472550 | Msa0588360 | 0.804601 | 1.997243e-49 | -8.615850e-47 |
| Msa0472550 | Msa0615440 | 0.812105 | 5.011482e-51 | -8.615850e-47 |
| Msa0472550 | Msa0649050 | 0.804561 | 2.035836e-49 | -8.615850e-47 |
| Msa0472550 | Msa0698490 | 0.815110 | 1.093294e-51 | -8.615850e-47 |
| Msa0472550 | Msa0698660 | 0.810192 | 1.302452e-50 | -8.615850e-47 |
| Msa0472550 | Msa1012740 | 0.828555 | 8.424101e-55 | -8.615850e-47 |
| Msa0472550 | Msa1043690 | 0.815200 | 1.044423e-51 | -8.615850e-47 |
| Msa0472550 | Msa1148910 | 0.811843 | 5.715380e-51 | -8.615850e-47 |
| Msa0472550 | Msa1155170 | -0.804531 | 2.066060e-49 | -8.615850e-47 |
| Msa0472550 | Msa1170670 | 0.979976 | 3.641052e-149 | -8.615850e-47 |
| Msa0472550 | Msa1218450 | 0.806635 | 7.474277e-50 | -8.615850e-47 |
| Msa0472550 | Msa1220280 | 0.808631 | 2.816216e-50 | -8.615850e-47 |
| Msa0472550 | Msa1220380 | 0.801221 | 9.975503e-49 | -8.615850e-47 |
| Msa0472550 | Msa1265890 | 0.809808 | 1.575596e-50 | -8.615850e-47 |
| Msa0472550 | Msa1297230 | 0.802700 | 4.954331e-49 | -8.615850e-47 |
| Msa0472550 | Msa1330410 | 0.811594 | 6.475024e-51 | -8.615850e-47 |
| Msa0472550 | Msa1374120 | 0.819375 | 1.200600e-52 | -8.615850e-47 |
| Msa0472550 | Msa1382620 | 0.819969 | 8.783307e-53 | -8.615850e-47 |
| Msa0472550 | Msa1390440 | 0.803142 | 4.015132e-49 | -8.615850e-47 |
| Msa0472550 | Msa1392780 | 0.800892 | 1.164323e-48 | -8.615850e-47 |
| Msa0472550 | Msa1405930 | 0.978015 | 5.988706e-145 | -8.615850e-47 |
| Msa0472550 | Msa1440310 | 0.815635 | 8.354804e-52 | -8.615850e-47 |
| Msa0258390 | Msa0472550 | 0.835856 | 1.315153e-56 | -8.615850e-47 |
| Msa0264010 | Msa0472550 | 0.805610 | 1.228390e-49 | -8.615850e-47 |
| Msa0297610 | Msa0472550 | 0.816734 | 4.747674e-52 | -8.615850e-47 |
| Msa0335730 | Msa0472550 | 0.876495 | 1.334852e-68 | -8.615850e-47 |
| Msa0357900 | Msa0472550 | 0.807133 | 5.866271e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472550 | MtrunA17_Chr3g0128321 | 96.154 | 416 | 12 | 2 | 1 | 412 | 1 | 416 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472550 | AT5G24630.5 | 59.804 | 204 | 70 | 5 | 208 | 409 | 242 | 435 | 1.95e-65 | 216 |
| Msa0472550 | AT5G24630.12 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 4.02e-65 | 214 |
| Msa0472550 | AT5G24630.11 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 4.02e-65 | 214 |
| Msa0472550 | AT5G24630.8 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 4.02e-65 | 214 |
| Msa0472550 | AT5G24630.10 | 63.934 | 183 | 55 | 4 | 228 | 409 | 261 | 433 | 9.31e-65 | 214 |
| Msa0472550 | AT5G24630.2 | 63.934 | 183 | 55 | 4 | 228 | 409 | 249 | 421 | 9.80e-65 | 213 |
| Msa0472550 | AT5G24630.9 | 63.934 | 183 | 55 | 4 | 228 | 409 | 265 | 437 | 1.07e-64 | 214 |
| Msa0472550 | AT5G24630.4 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.13e-64 | 214 |
| Msa0472550 | AT5G24630.7 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.13e-64 | 214 |
| Msa0472550 | AT5G24630.3 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.13e-64 | 214 |
| Msa0472550 | AT5G24630.1 | 63.934 | 183 | 55 | 4 | 228 | 409 | 268 | 440 | 1.19e-64 | 214 |
| Msa0472550 | AT5G24630.6 | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.52e-64 | 214 |
Find 111 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTACCCTTGTTCTTAT+TGG | 0.135839 | 3_3:+74963349 | None:intergenic |
| GCTTTCTTCTTTGCTGTCTT+TGG | 0.190175 | 3_3:+74960510 | None:intergenic |
| CTTTCTTTGACTCATTTCTT+AGG | 0.266328 | 3_3:+74960465 | None:intergenic |
| TTATTATGTTCCTCATTATC+AGG | 0.269735 | 3_3:-74960250 | Msa0472550:three_prime_UTR |
| CATAGATCTGAGTGGTGATA+TGG | 0.271690 | 3_3:-74961889 | Msa0472550:CDS |
| GGAGACTGCACACCAGTAAA+AGG | 0.273306 | 3_3:-74962665 | Msa0472550:CDS |
| GACAGTGTCACCGGCGAATT+AGG | 0.285567 | 3_3:+74963470 | None:intergenic |
| TTTCTTAGGCTTTGCCCTCT+TGG | 0.289065 | 3_3:+74960479 | None:intergenic |
| CGGAAAATCTCCATCCAAAA+AGG | 0.297047 | 3_3:-74962726 | Msa0472550:CDS |
| TTATTGGCCTTAAGATTCTT+AGG | 0.303993 | 3_3:+74963365 | None:intergenic |
| AGATTGGTTGCGTTCTTATC+AGG | 0.332376 | 3_3:-74963637 | Msa0472550:intron |
| TGATAATGAGGAACATAATA+AGG | 0.341133 | 3_3:+74960252 | None:intergenic |
| AAATTCTCCTGCTCGGGGTT+TGG | 0.345340 | 3_3:+74960310 | None:intergenic |
| TGTTTATGAAGCTGAAACTA+TGG | 0.348887 | 3_3:-74960952 | Msa0472550:CDS |
| GGCTTTGCCCTCTTGGAACT+TGG | 0.354261 | 3_3:+74960486 | None:intergenic |
| CATATCACCACTCAGATCTA+TGG | 0.355840 | 3_3:+74961890 | None:intergenic |
| GAAACTAAACCTCAACCTTC+TGG | 0.374230 | 3_3:-74962773 | Msa0472550:CDS |
| AGATTCCCCGTCCGGGGATC+AGG | 0.383118 | 3_3:-74961841 | Msa0472550:CDS |
| TTTATGCTCTGCTTCCTTGT+CGG | 0.385678 | 3_3:+74963048 | None:intergenic |
| GTGTACAGTTTCTTTCTTGT+GGG | 0.388627 | 3_3:+74963266 | None:intergenic |
| TTAAGATTCTTAGGTGACTT+AGG | 0.394502 | 3_3:+74963374 | None:intergenic |
| ATTCTTACATTAGGTACAAC+AGG | 0.403661 | 3_3:+74962441 | None:intergenic |
| CGATTTACCATCTCTGTCAT+TGG | 0.404669 | 3_3:+74960366 | None:intergenic |
| CACAATGAGTGTATCGAAAC+AGG | 0.406956 | 3_3:+74960227 | None:intergenic |
| GACATACAACGCAAAACGTC+CGG | 0.449657 | 3_3:+74961381 | None:intergenic |
| AAAACAAAGGTTAATGCAAA+GGG | 0.449941 | 3_3:-74962638 | Msa0472550:CDS |
| ATTATCTCAGATTCCCCGTC+CGG | 0.450226 | 3_3:-74961849 | Msa0472550:CDS |
| CCTCAACCTTCTGGTGAAGA+TGG | 0.453566 | 3_3:-74962764 | Msa0472550:CDS |
| CAGCTCCCACATTGAATGAA+TGG | 0.455114 | 3_3:+74962859 | None:intergenic |
| ACCTTTATGACGGAGGGAAA+AGG | 0.461841 | 3_3:+74963931 | None:intergenic |
| TGATAAGAACGCAACCAATC+TGG | 0.466147 | 3_3:+74963639 | None:intergenic |
| CGTGTACAGTTTCTTTCTTG+TGG | 0.470835 | 3_3:+74963265 | None:intergenic |
| AACTGAAGATCATATTGATC+AGG | 0.477695 | 3_3:-74962798 | Msa0472550:CDS |
| CTGGAGATAGTTCGCCAGAT+TGG | 0.481862 | 3_3:-74963653 | Msa0472550:CDS |
| TTATCTCAGATTCCCCGTCC+GGG | 0.484353 | 3_3:-74961848 | Msa0472550:CDS |
| TAAGTCACCTAAGAATCTTA+AGG | 0.484727 | 3_3:-74963372 | Msa0472550:CDS |
| CCATCTTCACCAGAAGGTTG+AGG | 0.485121 | 3_3:+74962764 | None:intergenic |
| GAAGCTGAAACTATGGTTGA+AGG | 0.487381 | 3_3:-74960945 | Msa0472550:intron |
| ATAGATCTGAGTGGTGATAT+GGG | 0.488389 | 3_3:-74961888 | Msa0472550:CDS |
| GTACTATGATGCAGGAAAGA+AGG | 0.488549 | 3_3:-74963101 | Msa0472550:intron |
| TTTGATTCTGACGAGGAAGA+TGG | 0.492638 | 3_3:-74960767 | Msa0472550:CDS |
| CAATGACAGAGATGGTAAAT+CGG | 0.497969 | 3_3:-74960365 | Msa0472550:three_prime_UTR |
| ATGTGAAAAGGGACATTGGA+TGG | 0.498992 | 3_3:-74960797 | Msa0472550:intron |
| CAGGCTCTTGTTGAGTGTCA+AGG | 0.504953 | 3_3:-74961918 | Msa0472550:CDS |
| ACATTTCCTGATCCCCGGAC+GGG | 0.507819 | 3_3:+74961835 | None:intergenic |
| CGAAATGGGACAGGTGGTGA+TGG | 0.508948 | 3_3:-74962501 | Msa0472550:intron |
| GTGATATGGGAGCTGTAGGG+AGG | 0.516201 | 3_3:-74961875 | Msa0472550:CDS |
| CTGACGAGGAAGATGGTAAG+AGG | 0.521899 | 3_3:-74960760 | Msa0472550:CDS |
| AGACACCTGGTAAATCCAAA+AGG | 0.527784 | 3_3:-74960691 | Msa0472550:CDS |
| ATCTTCCTCGTCAGAATCAA+AGG | 0.528675 | 3_3:+74960769 | None:intergenic |
| TTTCATGTGAAAAGGGACAT+TGG | 0.535477 | 3_3:-74960801 | Msa0472550:intron |
| GAAAACAAAGGTTAATGCAA+AGG | 0.535733 | 3_3:-74962639 | Msa0472550:CDS |
| AAGGTTAATGCAAAGGGGAA+AGG | 0.542305 | 3_3:-74962632 | Msa0472550:intron |
| TACAGTTTCTTTCTTGTGGG+TGG | 0.543570 | 3_3:+74963269 | None:intergenic |
| TCTGGTGAAGATGGACTTCG+TGG | 0.547152 | 3_3:-74962755 | Msa0472550:CDS |
| CTAATTACCTTTATGACGGA+GGG | 0.548331 | 3_3:+74963925 | None:intergenic |
| GAGACTGCACACCAGTAAAA+GGG | 0.548913 | 3_3:-74962664 | Msa0472550:CDS |
| TCGAAACAGGCCTGATAATG+AGG | 0.550571 | 3_3:+74960240 | None:intergenic |
| GATGGACTTCGTGGCAATGA+CGG | 0.550838 | 3_3:-74962746 | Msa0472550:CDS |
| ACAACGCAAAACGTCCGGCT+AGG | 0.551306 | 3_3:+74961386 | None:intergenic |
| AGTGGTGATATGGGAGCTGT+AGG | 0.551651 | 3_3:-74961879 | Msa0472550:CDS |
| ATTCTTACCAAACCCCGAGC+AGG | 0.555541 | 3_3:-74960317 | Msa0472550:three_prime_UTR |
| CATTTCCTGATCCCCGGACG+GGG | 0.562368 | 3_3:+74961836 | None:intergenic |
| AGATCTAATTACCTTTATGA+CGG | 0.566384 | 3_3:+74963921 | None:intergenic |
| GGTAAATGAAGATGAGAAAG+CGG | 0.573759 | 3_3:+74963692 | None:intergenic |
| CACATTTCCTGATCCCCGGA+CGG | 0.578180 | 3_3:+74961834 | None:intergenic |
| GAATCAGATGACAGTGTCAC+CGG | 0.579458 | 3_3:+74963461 | None:intergenic |
| AGAAAGCTCCAAGTTCCAAG+AGG | 0.587132 | 3_3:-74960494 | Msa0472550:CDS |
| CTGTATGAAGTCGTTCATGA+TGG | 0.587502 | 3_3:+74960992 | None:intergenic |
| TAAGCACATTTCCTGATCCC+CGG | 0.588249 | 3_3:+74961830 | None:intergenic |
| CACGCTGAGGAACAGACACC+TGG | 0.588572 | 3_3:-74960704 | Msa0472550:CDS |
| CAGGGTGCTGAAAAGAAAAG+AGG | 0.588839 | 3_3:-74960558 | Msa0472550:CDS |
| CTTTGGGCAGACAGAGGCAA+AGG | 0.589063 | 3_3:-74961215 | Msa0472550:intron |
| TCTAATTACCTTTATGACGG+AGG | 0.590426 | 3_3:+74963924 | None:intergenic |
| GCTATGATCACGACATGACT+CGG | 0.590906 | 3_3:+74962826 | None:intergenic |
| TCTTAAGGCCAATAAGAACA+AGG | 0.596455 | 3_3:-74963357 | Msa0472550:CDS |
| GGTGCCCACTCCTAATTCGC+CGG | 0.598921 | 3_3:-74963480 | Msa0472550:CDS |
| ACTTTCTCAGAAAGCATCAA+AGG | 0.599098 | 3_3:+74962256 | None:intergenic |
| GCGACTATCATGTAAATACT+CGG | 0.599318 | 3_3:+74963439 | None:intergenic |
| TATCTCAGATTCCCCGTCCG+GGG | 0.600901 | 3_3:-74961847 | Msa0472550:CDS |
| ACCTGGTAAATCCAAAAGGA+AGG | 0.601971 | 3_3:-74960687 | Msa0472550:CDS |
| AAGCATCAAAGGCAATATTG+AGG | 0.602144 | 3_3:+74962267 | None:intergenic |
| GTGGTGATATGGGAGCTGTA+GGG | 0.605513 | 3_3:-74961878 | Msa0472550:CDS |
| GAAATGTGCTTAGATTTGAA+AGG | 0.606376 | 3_3:-74961819 | Msa0472550:intron |
| GAAAGCTCCAAGTTCCAAGA+GGG | 0.606806 | 3_3:-74960493 | Msa0472550:CDS |
| TCAGCTTCATAAACATCAGA+CGG | 0.609363 | 3_3:+74960960 | None:intergenic |
| CGAAGTCCATCTTCACCAGA+AGG | 0.616356 | 3_3:+74962758 | None:intergenic |
| AAAGAAACTGTACACGCGGA+AGG | 0.621325 | 3_3:-74963258 | Msa0472550:CDS |
| AGGAATCCATTCATTCAATG+TGG | 0.621403 | 3_3:-74962865 | Msa0472550:CDS |
| AAACATCTATAGTTCCTAGC+CGG | 0.625002 | 3_3:-74961400 | Msa0472550:CDS |
| TGATATGGGAGCTGTAGGGA+GGG | 0.625544 | 3_3:-74961874 | Msa0472550:CDS |
| GGAATCCATTCATTCAATGT+GGG | 0.629446 | 3_3:-74962864 | Msa0472550:CDS |
| CAATTTACCAATGACAGAGA+TGG | 0.633181 | 3_3:-74960373 | Msa0472550:three_prime_UTR |
| TTTATGACGGAGGGAAAAGG+CGG | 0.633259 | 3_3:+74963934 | None:intergenic |
| GGTTAGCTTTGGGCAGACAG+AGG | 0.635444 | 3_3:-74961221 | Msa0472550:CDS |
| CAAGAAAGAAACTGTACACG+CGG | 0.635708 | 3_3:-74963262 | Msa0472550:CDS |
| CTATGATGCAGGAAAGAAGG+AGG | 0.639245 | 3_3:-74963098 | Msa0472550:intron |
| CATCAAAGGCAATATTGAGG+AGG | 0.641549 | 3_3:+74962270 | None:intergenic |
| TGTCACCGGCGAATTAGGAG+TGG | 0.641843 | 3_3:+74963475 | None:intergenic |
| GTCACCGGCGAATTAGGAGT+GGG | 0.658496 | 3_3:+74963476 | None:intergenic |
| CTTAAGGCCAATAAGAACAA+GGG | 0.659601 | 3_3:-74963356 | Msa0472550:CDS |
| TGAGAAAGTTCATCGCACAA+AGG | 0.671129 | 3_3:-74962242 | Msa0472550:intron |
| TTATGACGGAGGGAAAAGGC+GGG | 0.671583 | 3_3:+74963935 | None:intergenic |
| AAGGAAGGCGGACAAAACAT+CGG | 0.672092 | 3_3:-74960672 | Msa0472550:intron |
| AGTAAAAGGGAAGAAAACAA+AGG | 0.673109 | 3_3:-74962651 | Msa0472550:CDS |
| TGATCAAAACGAGCACGCTG+AGG | 0.690459 | 3_3:-74960717 | Msa0472550:CDS |
| GCTTCATAAACATCAGACGG+TGG | 0.691289 | 3_3:+74960963 | None:intergenic |
| TGGTAAATCCAAAAGGAAGG+CGG | 0.692323 | 3_3:-74960684 | Msa0472550:CDS |
| GCTCGATTCAGACACCGACA+AGG | 0.693845 | 3_3:-74963062 | Msa0472550:CDS |
| AAACAAAGGTTAATGCAAAG+GGG | 0.698410 | 3_3:-74962637 | Msa0472550:CDS |
| GGTGACTCCATAGATCTGAG+TGG | 0.759776 | 3_3:-74961897 | Msa0472550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTTTTAAGAAAAAA+AGG | - | chr3_3:74961539-74961558 | Msa0472550:intron | 10.0% |
| !! | ATAAGTAAATTAAATAAATG+AGG | + | chr3_3:74963039-74963058 | None:intergenic | 10.0% |
| !!! | CTTGATATTTGATTTTAATT+TGG | - | chr3_3:74960912-74960931 | Msa0472550:intron | 15.0% |
| !! | TTTAGATGAAATAGTATTTA+TGG | - | chr3_3:74960942-74960961 | Msa0472550:intron | 15.0% |
| !!! | ATATTATTTTACCGAAAAAA+AGG | - | chr3_3:74963268-74963287 | Msa0472550:CDS | 15.0% |
| !!! | TCATATTTTTTCCTTTTTTT+CGG | + | chr3_3:74963282-74963301 | None:intergenic | 15.0% |
| !!! | GCTTATAATTTTGTTTTGAA+TGG | - | chr3_3:74962073-74962092 | Msa0472550:intron | 20.0% |
| !!! | TTTTTCATGAAAAAAGGAAA+TGG | + | chr3_3:74962159-74962178 | None:intergenic | 20.0% |
| !!! | ATTTCCTTTTTTCATGAAAA+AGG | - | chr3_3:74962158-74962177 | Msa0472550:intron | 20.0% |
| !!! | ATCTTACCTGTTTTAAAAAA+AGG | - | chr3_3:74962514-74962533 | Msa0472550:intron | 20.0% |
| !!! | TCTTACCTGTTTTAAAAAAA+GGG | - | chr3_3:74962515-74962534 | Msa0472550:intron | 20.0% |
| !! | ACATTAGAACAAATATAACT+TGG | + | chr3_3:74962611-74962630 | None:intergenic | 20.0% |
| !! | AAGAAAATTACGACTTATAA+TGG | + | chr3_3:74962636-74962655 | None:intergenic | 20.0% |
| !! | AAAGATTTGAAAAATCAGTT+AGG | + | chr3_3:74962688-74962707 | None:intergenic | 20.0% |
| !!! | CAAATCTTTATTTTCTTTTC+AGG | - | chr3_3:74962699-74962718 | Msa0472550:CDS | 20.0% |
| !! | AAAGCAATATTTAAAAGGTA+TGG | + | chr3_3:74962862-74962881 | None:intergenic | 20.0% |
| !! | GTATGAAAGCAATATTTAAA+AGG | + | chr3_3:74962867-74962886 | None:intergenic | 20.0% |
| !! | AAGTAAAATCTAGATAACAA+CGG | + | chr3_3:74962945-74962964 | None:intergenic | 20.0% |
| !! | AGTTACAGGTTAAATATTAA+TGG | + | chr3_3:74963105-74963124 | None:intergenic | 20.0% |
| !!! | TCTATTATTTTCATGTGAAA+AGG | - | chr3_3:74963324-74963343 | Msa0472550:CDS | 20.0% |
| !!! | CTATTATTTTCATGTGAAAA+GGG | - | chr3_3:74963325-74963344 | Msa0472550:CDS | 20.0% |
| ! | AGATCTAATTACCTTTATGA+CGG | + | chr3_3:74960215-74960234 | None:intergenic | 25.0% |
| !!! | TTAGCTTTCAGATTTTAGTT+CGG | - | chr3_3:74960284-74960303 | Msa0472550:three_prime_UTR | 25.0% |
| ! | CTAACATTTAAAGATGCAAT+GGG | + | chr3_3:74961117-74961136 | None:intergenic | 25.0% |
| ! | ATAATCACAATACAAATAGC+AGG | + | chr3_3:74961224-74961243 | None:intergenic | 25.0% |
| !!! | TATACCAAATGTTTTTGCAT+AGG | - | chr3_3:74961248-74961267 | Msa0472550:intron | 25.0% |
| !! | CAATATGATCTTCAGTTTTT+GGG | + | chr3_3:74961332-74961351 | None:intergenic | 25.0% |
| !! | TCAATATGATCTTCAGTTTT+TGG | + | chr3_3:74961333-74961352 | None:intergenic | 25.0% |
| ! | AAAACAAAGGTTAATGCAAA+GGG | - | chr3_3:74961495-74961514 | Msa0472550:intron | 25.0% |
| ! | AGAAACATGTATAAATGGTA+AGG | + | chr3_3:74961612-74961631 | None:intergenic | 25.0% |
| ! | TTTCGAGAAACATGTATAAA+TGG | + | chr3_3:74961617-74961636 | None:intergenic | 25.0% |
| ! | TTTATACATGTTTCTCGAAA+TGG | - | chr3_3:74961617-74961636 | Msa0472550:intron | 25.0% |
| ! | TTATACATGTTTCTCGAAAT+GGG | - | chr3_3:74961618-74961637 | Msa0472550:intron | 25.0% |
| ! | AACAATGTCATTCTTACATT+AGG | + | chr3_3:74961704-74961723 | None:intergenic | 25.0% |
| !! | CCATGCTGTAAAATATTTTT+AGG | + | chr3_3:74961737-74961756 | None:intergenic | 25.0% |
| !! | CCTAAAAATATTTTACAGCA+TGG | - | chr3_3:74961734-74961753 | Msa0472550:intron | 25.0% |
| !!! | TGTTTGGTTTTATAGTTGTA+TGG | - | chr3_3:74961955-74961974 | Msa0472550:intron | 25.0% |
| !!! | GTTTGGTTTTATAGTTGTAT+GGG | - | chr3_3:74961956-74961975 | Msa0472550:intron | 25.0% |
| ! | TCGAAAACATATAAATTTCG+TGG | - | chr3_3:74962031-74962050 | Msa0472550:intron | 25.0% |
| !!! | GTTTCCTTTTTCATGAAAAA+AGG | + | chr3_3:74962165-74962184 | None:intergenic | 25.0% |
| ! | AAAATAGCTAAGCTGTATTA+TGG | + | chr3_3:74962443-74962462 | None:intergenic | 25.0% |
| !!! | AGATTCCCTTTTTTTAAAAC+AGG | + | chr3_3:74962523-74962542 | None:intergenic | 25.0% |
| ! | GAAATCAAAATGTCAAAAAG+AGG | + | chr3_3:74962584-74962603 | None:intergenic | 25.0% |
| !! | TTTCTTCTTCTTTTTCTTTC+AGG | - | chr3_3:74962891-74962910 | Msa0472550:intron | 25.0% |
| ! | TCTATCTGAAAATAAGTTAC+AGG | + | chr3_3:74963119-74963138 | None:intergenic | 25.0% |
| !!! | TGTAACTTATTTTCAGATAG+AGG | - | chr3_3:74963118-74963137 | Msa0472550:intron | 25.0% |
| ! | TAAAATCCTCAGTTAATTGT+TGG | + | chr3_3:74963227-74963246 | None:intergenic | 25.0% |
| !! | ATAATATTTAAAGCAGCACT+AGG | + | chr3_3:74963255-74963274 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGGTAAAAATAC+TGG | - | chr3_3:74963587-74963606 | Msa0472550:intron | 25.0% |
| !!! | TATTTTTAAATTCTCCTGCT+CGG | + | chr3_3:74963833-74963852 | None:intergenic | 25.0% |
| !! | TGATAATGAGGAACATAATA+AGG | + | chr3_3:74963884-74963903 | None:intergenic | 25.0% |
| ! | TTATTATGTTCCTCATTATC+AGG | - | chr3_3:74963883-74963902 | Msa0472550:intron | 25.0% |
| GAACGAAAAACAAGTGTATA+AGG | + | chr3_3:74960406-74960425 | None:intergenic | 30.0% | |
| TGCAATACTAACATCATTGA+TGG | - | chr3_3:74960609-74960628 | Msa0472550:intron | 30.0% | |
| !! | TTACACATTTTTGTGCTACT+AGG | - | chr3_3:74960632-74960651 | Msa0472550:intron | 30.0% |
| TTAAGATTCTTAGGTGACTT+AGG | + | chr3_3:74960762-74960781 | None:intergenic | 30.0% | |
| TAAGTCACCTAAGAATCTTA+AGG | - | chr3_3:74960761-74960780 | Msa0472550:CDS | 30.0% | |
| !! | TTATTGGCCTTAAGATTCTT+AGG | + | chr3_3:74960771-74960790 | None:intergenic | 30.0% |
| GTAAAAATAACACTCTCGAA+TGG | + | chr3_3:74960998-74961017 | None:intergenic | 30.0% | |
| CCTAACATTTAAAGATGCAA+TGG | + | chr3_3:74961118-74961137 | None:intergenic | 30.0% | |
| CCATTGCATCTTTAAATGTT+AGG | - | chr3_3:74961115-74961134 | Msa0472550:intron | 30.0% | |
| TTGCATCTTTAAATGTTAGG+TGG | - | chr3_3:74961118-74961137 | Msa0472550:intron | 30.0% | |
| ATTGTGTCAAAAATATGGGT+TGG | - | chr3_3:74961192-74961211 | Msa0472550:intron | 30.0% | |
| !!! | TCAAAAATATGGGTTGGTTT+TGG | - | chr3_3:74961198-74961217 | Msa0472550:intron | 30.0% |
| GATTCCTATGCAAAAACATT+TGG | + | chr3_3:74961255-74961274 | None:intergenic | 30.0% | |
| AACTGAAGATCATATTGATC+AGG | - | chr3_3:74961335-74961354 | Msa0472550:intron | 30.0% | |
| TCACAAAAACAAATAGACGT+AGG | - | chr3_3:74961447-74961466 | Msa0472550:intron | 30.0% | |
| !! | TTTGTTTTCTTCCCTTTTAC+TGG | + | chr3_3:74961483-74961502 | None:intergenic | 30.0% |
| AGTAAAAGGGAAGAAAACAA+AGG | - | chr3_3:74961482-74961501 | Msa0472550:intron | 30.0% | |
| GAAAACAAAGGTTAATGCAA+AGG | - | chr3_3:74961494-74961513 | Msa0472550:intron | 30.0% | |
| AAACAAAGGTTAATGCAAAG+GGG | - | chr3_3:74961496-74961515 | Msa0472550:intron | 30.0% | |
| CATGCATATGGATATGAAAT+AGG | - | chr3_3:74961581-74961600 | Msa0472550:intron | 30.0% | |
| ATTCTTACATTAGGTACAAC+AGG | + | chr3_3:74961695-74961714 | None:intergenic | 30.0% | |
| TTGTTCATGTATCAAAGTGA+CGG | + | chr3_3:74961760-74961779 | None:intergenic | 30.0% | |
| AAAACCAAACATGTAGCAAA+GGG | + | chr3_3:74961946-74961965 | None:intergenic | 30.0% | |
| TAAAACCAAACATGTAGCAA+AGG | + | chr3_3:74961947-74961966 | None:intergenic | 30.0% | |
| CATGTTTAAATACTACCACA+GGG | - | chr3_3:74961980-74961999 | Msa0472550:intron | 30.0% | |
| GAAATGTGCTTAGATTTGAA+AGG | - | chr3_3:74962314-74962333 | Msa0472550:intron | 30.0% | |
| !! | ACACTACTTTTGTCTAATAG+TGG | - | chr3_3:74962659-74962678 | Msa0472550:CDS | 30.0% |
| GTAATCTGCATTTATCATCA+CGG | - | chr3_3:74962784-74962803 | Msa0472550:CDS | 30.0% | |
| AAGGTATGGTATCTTAATCA+TGG | + | chr3_3:74962848-74962867 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTTCAGGTTAGCTT+TGG | - | chr3_3:74962901-74962920 | Msa0472550:intron | 30.0% |
| !!! | TTTTCTTTCAGGTTAGCTTT+GGG | - | chr3_3:74962902-74962921 | Msa0472550:intron | 30.0% |
| TAAATATGTCCGAATACATC+TGG | - | chr3_3:74962984-74963003 | Msa0472550:intron | 30.0% | |
| ! | ATTTTACAAAATCCTGGTCA+AGG | + | chr3_3:74963076-74963095 | None:intergenic | 30.0% |
| ! | GACCAGGATTTTGTAAAATA+CGG | - | chr3_3:74963077-74963096 | Msa0472550:CDS | 30.0% |
| TGTTTATGAAGCTGAAACTA+TGG | - | chr3_3:74963181-74963200 | Msa0472550:intron | 30.0% | |
| AATCTAAACCAAAAGCAACT+AGG | + | chr3_3:74963494-74963513 | None:intergenic | 30.0% | |
| ! | GTATTGATGATTGAAATTGC+TGG | - | chr3_3:74963519-74963538 | Msa0472550:intron | 30.0% |
| TTGCTGAAAATTTCGATACA+GGG | - | chr3_3:74963557-74963576 | Msa0472550:intron | 30.0% | |
| AAAAGAGGTAAAAATACTGG+AGG | - | chr3_3:74963590-74963609 | Msa0472550:intron | 30.0% | |
| CTTTCTTTGACTCATTTCTT+AGG | + | chr3_3:74963671-74963690 | None:intergenic | 30.0% | |
| ! | ATTTTTAAATTCTCCTGCTC+GGG | + | chr3_3:74963832-74963851 | None:intergenic | 30.0% |
| ! | CTAATTACCTTTATGACGGA+GGG | + | chr3_3:74960211-74960230 | None:intergenic | 35.0% |
| TCTAATTACCTTTATGACGG+AGG | + | chr3_3:74960212-74960231 | None:intergenic | 35.0% | |
| CAAATGATCGAACAGGTAAT+GGG | + | chr3_3:74960366-74960385 | None:intergenic | 35.0% | |
| CGAAAAACAAGTGTATAAGG+AGG | + | chr3_3:74960403-74960422 | None:intergenic | 35.0% | |
| GGTAAATGAAGATGAGAAAG+CGG | + | chr3_3:74960444-74960463 | None:intergenic | 35.0% | |
| ACCTAAAAAATGAGCAGTTC+TGG | - | chr3_3:74960461-74960480 | Msa0472550:exon | 35.0% | |
| !!! | TCCAGAACTGCTCATTTTTT+AGG | + | chr3_3:74960465-74960484 | None:intergenic | 35.0% |
| ACATTGTACATCAGTTCCTA+AGG | - | chr3_3:74960578-74960597 | Msa0472550:intron | 35.0% | |
| CATTGTACATCAGTTCCTAA+GGG | - | chr3_3:74960579-74960598 | Msa0472550:intron | 35.0% | |
| GCGACTATCATGTAAATACT+CGG | + | chr3_3:74960697-74960716 | None:intergenic | 35.0% | |
| TCTTAAGGCCAATAAGAACA+AGG | - | chr3_3:74960776-74960795 | Msa0472550:CDS | 35.0% | |
| CTTAAGGCCAATAAGAACAA+GGG | - | chr3_3:74960777-74960796 | Msa0472550:CDS | 35.0% | |
| GTGTACAGTTTCTTTCTTGT+GGG | + | chr3_3:74960870-74960889 | None:intergenic | 35.0% | |
| !! | GTCATTTTGTACTATGATGC+AGG | - | chr3_3:74961024-74961043 | Msa0472550:intron | 35.0% |
| TTAGGTGGCATTTGTAGATT+TGG | - | chr3_3:74961133-74961152 | Msa0472550:intron | 35.0% | |
| TAGGTGGCATTTGTAGATTT+GGG | - | chr3_3:74961134-74961153 | Msa0472550:intron | 35.0% | |
| TTGACACAATGCGCATAATA+AGG | + | chr3_3:74961182-74961201 | None:intergenic | 35.0% | |
| TGCGCATTGTGTCAAAAATA+TGG | - | chr3_3:74961187-74961206 | Msa0472550:intron | 35.0% | |
| GCGCATTGTGTCAAAAATAT+GGG | - | chr3_3:74961188-74961207 | Msa0472550:intron | 35.0% | |
| AGGAATCCATTCATTCAATG+TGG | - | chr3_3:74961268-74961287 | Msa0472550:intron | 35.0% | |
| GGAATCCATTCATTCAATGT+GGG | - | chr3_3:74961269-74961288 | Msa0472550:intron | 35.0% | |
| CATATCCATATGCATGAAGA+TGG | + | chr3_3:74961577-74961596 | None:intergenic | 35.0% | |
| ! | AAAGCACAATTTAGAATGCC+AGG | + | chr3_3:74961821-74961840 | None:intergenic | 35.0% |
| CTTTGCTTTCTATTTGTTCC+AGG | - | chr3_3:74961837-74961856 | Msa0472550:CDS | 35.0% | |
| AAGCATCAAAGGCAATATTG+AGG | + | chr3_3:74961869-74961888 | None:intergenic | 35.0% | |
| !! | ACTTTCTCAGAAAGCATCAA+AGG | + | chr3_3:74961880-74961899 | None:intergenic | 35.0% |
| CCTGTGGTAGTATTTAAACA+TGG | + | chr3_3:74961982-74962001 | None:intergenic | 35.0% | |
| CCATGTTTAAATACTACCAC+AGG | - | chr3_3:74961979-74961998 | Msa0472550:intron | 35.0% | |
| ! | AGTGAAATGTGTTACTCATC+TGG | + | chr3_3:74962010-74962029 | None:intergenic | 35.0% |
| !! | GTTTTGAATGGAACGACAAA+TGG | - | chr3_3:74962085-74962104 | Msa0472550:intron | 35.0% |
| ATAGATCTGAGTGGTGATAT+GGG | - | chr3_3:74962245-74962264 | Msa0472550:CDS | 35.0% | |
| GAGGTAATCGCTAAAAATCA+AGG | + | chr3_3:74962565-74962584 | None:intergenic | 35.0% | |
| AAACATCTATAGTTCCTAGC+CGG | - | chr3_3:74962733-74962752 | Msa0472550:CDS | 35.0% | |
| ! | TTTTGCGTTGTATGTCATCT+TGG | - | chr3_3:74962759-74962778 | Msa0472550:CDS | 35.0% |
| AGGCCAAATAGAAACTTTCA+AGG | + | chr3_3:74962810-74962829 | None:intergenic | 35.0% | |
| AGTAGCAATCCAGATGTATT+CGG | + | chr3_3:74962996-74963015 | None:intergenic | 35.0% | |
| ! | CACCGTATTTTACAAAATCC+TGG | + | chr3_3:74963082-74963101 | None:intergenic | 35.0% |
| TCAGCTTCATAAACATCAGA+CGG | + | chr3_3:74963176-74963195 | None:intergenic | 35.0% | |
| AATCCTCAGTTAATTGTTGG+TGG | + | chr3_3:74963224-74963243 | None:intergenic | 35.0% | |
| TTTCATGTGAAAAGGGACAT+TGG | - | chr3_3:74963332-74963351 | Msa0472550:CDS | 35.0% | |
| ! | TTTTTCCTTTGATTCTGACG+AGG | - | chr3_3:74963359-74963378 | Msa0472550:CDS | 35.0% |
| !! | GTAAGTTTCCTAGTTGCTTT+TGG | - | chr3_3:74963483-74963502 | Msa0472550:intron | 35.0% |
| GTTGCTGAAAATTTCGATAC+AGG | - | chr3_3:74963556-74963575 | Msa0472550:intron | 35.0% | |
| CAATTTACCAATGACAGAGA+TGG | - | chr3_3:74963760-74963779 | Msa0472550:intron | 35.0% | |
| CAATGACAGAGATGGTAAAT+CGG | - | chr3_3:74963768-74963787 | Msa0472550:intron | 35.0% | |
| ! | TTTTTAAATTCTCCTGCTCG+GGG | + | chr3_3:74963831-74963850 | None:intergenic | 35.0% |
| GCAAATGATCGAACAGGTAA+TGG | + | chr3_3:74960367-74960386 | None:intergenic | 40.0% | |
| AGTGAAGCAAATGATCGAAC+AGG | + | chr3_3:74960373-74960392 | None:intergenic | 40.0% | |
| TGATAAGAACGCAACCAATC+TGG | + | chr3_3:74960497-74960516 | None:intergenic | 40.0% | |
| ! | AGATTGGTTGCGTTCTTATC+AGG | - | chr3_3:74960496-74960515 | Msa0472550:CDS | 40.0% |
| GTATTGCACAACTAACCCTT+AGG | + | chr3_3:74960597-74960616 | None:intergenic | 40.0% | |
| ! | TAGTCGCAGTTTTTCTGATG+AGG | - | chr3_3:74960710-74960729 | Msa0472550:CDS | 40.0% |
| !! | CGTCTTTTTCGTTGAAGACT+TGG | + | chr3_3:74960808-74960827 | None:intergenic | 40.0% |
| GTCTTCAACGAAAAAGACGT+TGG | - | chr3_3:74960809-74960828 | Msa0472550:intron | 40.0% | |
| TCAACGAAAAAGACGTTGGA+AGG | - | chr3_3:74960813-74960832 | Msa0472550:intron | 40.0% | |
| TACAGTTTCTTTCTTGTGGG+TGG | + | chr3_3:74960867-74960886 | None:intergenic | 40.0% | |
| CGTGTACAGTTTCTTTCTTG+TGG | + | chr3_3:74960871-74960890 | None:intergenic | 40.0% | |
| CAAGAAAGAAACTGTACACG+CGG | - | chr3_3:74960871-74960890 | Msa0472550:intron | 40.0% | |
| TACACGCGGAAGGATAAAAA+TGG | - | chr3_3:74960885-74960904 | Msa0472550:intron | 40.0% | |
| GTACTATGATGCAGGAAAGA+AGG | - | chr3_3:74961032-74961051 | Msa0472550:intron | 40.0% | |
| TTTATGCTCTGCTTCCTTGT+CGG | + | chr3_3:74961088-74961107 | None:intergenic | 40.0% | |
| AGGTGGCATTTGTAGATTTG+GGG | - | chr3_3:74961135-74961154 | Msa0472550:intron | 40.0% | |
| GAAACTAAACCTCAACCTTC+TGG | - | chr3_3:74961360-74961379 | Msa0472550:intron | 40.0% | |
| CGGAAAATCTCCATCCAAAA+AGG | - | chr3_3:74961407-74961426 | Msa0472550:CDS | 40.0% | |
| !!! | GCTTTTGAAGCCTTTTTGGA+TGG | + | chr3_3:74961420-74961439 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTGAAGCCTTTT+TGG | + | chr3_3:74961424-74961443 | None:intergenic | 40.0% |
| CAAAAAGGCTTCAAAAGCGA+AGG | - | chr3_3:74961422-74961441 | Msa0472550:intron | 40.0% | |
| AAGGTTAATGCAAAGGGGAA+AGG | - | chr3_3:74961501-74961520 | Msa0472550:intron | 40.0% | |
| TTGCTCCATCTTCATGCATA+TGG | - | chr3_3:74961569-74961588 | Msa0472550:intron | 40.0% | |
| CATCAAAGGCAATATTGAGG+AGG | + | chr3_3:74961866-74961885 | None:intergenic | 40.0% | |
| TGAGAAAGTTCATCGCACAA+AGG | - | chr3_3:74961891-74961910 | Msa0472550:CDS | 40.0% | |
| GATTCCCTTTGCTACATGTT+TGG | - | chr3_3:74961939-74961958 | Msa0472550:intron | 40.0% | |
| TGGAAGAAAAGTTGCTAGTC+TGG | - | chr3_3:74962051-74962070 | Msa0472550:intron | 40.0% | |
| !!! | ACAGAGCAGCTTTTTAGGAT+TGG | + | chr3_3:74962191-74962210 | None:intergenic | 40.0% |
| ! | GCAAAACAGAGCAGCTTTTT+AGG | + | chr3_3:74962196-74962215 | None:intergenic | 40.0% |
| ! | AAAAAGCTGCTCTGTTTTGC+AGG | - | chr3_3:74962196-74962215 | Msa0472550:intron | 40.0% |
| CATATCACCACTCAGATCTA+TGG | + | chr3_3:74962246-74962265 | None:intergenic | 40.0% | |
| CATAGATCTGAGTGGTGATA+TGG | - | chr3_3:74962244-74962263 | Msa0472550:CDS | 40.0% | |
| GTATACGCAGTGTTATCATC+AGG | + | chr3_3:74962412-74962431 | None:intergenic | 40.0% | |
| CGGCCTTGAAAGTTTCTATT+TGG | - | chr3_3:74962804-74962823 | Msa0472550:CDS | 40.0% | |
| CATGGAAGTAACTAGCTACA+AGG | + | chr3_3:74962830-74962849 | None:intergenic | 40.0% | |
| CTGTATGAAGTCGTTCATGA+TGG | + | chr3_3:74963144-74963163 | None:intergenic | 40.0% | |
| GAAGCTGAAACTATGGTTGA+AGG | - | chr3_3:74963188-74963207 | Msa0472550:intron | 40.0% | |
| CATCCACCAACAATTAACTG+AGG | - | chr3_3:74963218-74963237 | Msa0472550:intron | 40.0% | |
| ATGTGAAAAGGGACATTGGA+TGG | - | chr3_3:74963336-74963355 | Msa0472550:CDS | 40.0% | |
| ATCTTCCTCGTCAGAATCAA+AGG | + | chr3_3:74963367-74963386 | None:intergenic | 40.0% | |
| TTTGATTCTGACGAGGAAGA+TGG | - | chr3_3:74963366-74963385 | Msa0472550:CDS | 40.0% | |
| AGACACCTGGTAAATCCAAA+AGG | - | chr3_3:74963442-74963461 | Msa0472550:CDS | 40.0% | |
| ACCTGGTAAATCCAAAAGGA+AGG | - | chr3_3:74963446-74963465 | Msa0472550:CDS | 40.0% | |
| TGGTAAATCCAAAAGGAAGG+CGG | - | chr3_3:74963449-74963468 | Msa0472550:CDS | 40.0% | |
| ! | GCTTTCTTCTTTGCTGTCTT+TGG | + | chr3_3:74963626-74963645 | None:intergenic | 40.0% |
| CGATTTACCATCTCTGTCAT+TGG | + | chr3_3:74963770-74963789 | None:intergenic | 40.0% | |
| CACAATGAGTGTATCGAAAC+AGG | + | chr3_3:74963909-74963928 | None:intergenic | 40.0% | |
| ! | TTTATGACGGAGGGAAAAGG+CGG | + | chr3_3:74960202-74960221 | None:intergenic | 45.0% |
| ! | ACCTTTATGACGGAGGGAAA+AGG | + | chr3_3:74960205-74960224 | None:intergenic | 45.0% |
| GAATCAGATGACAGTGTCAC+CGG | + | chr3_3:74960675-74960694 | None:intergenic | 45.0% | |
| GGCACTACCCTTGTTCTTAT+TGG | + | chr3_3:74960787-74960806 | None:intergenic | 45.0% | |
| AAAGAAACTGTACACGCGGA+AGG | - | chr3_3:74960875-74960894 | Msa0472550:intron | 45.0% | |
| CTATGATGCAGGAAAGAAGG+AGG | - | chr3_3:74961035-74961054 | Msa0472550:intron | 45.0% | |
| CAGCTCCCACATTGAATGAA+TGG | + | chr3_3:74961277-74961296 | None:intergenic | 45.0% | |
| GCTATGATCACGACATGACT+CGG | + | chr3_3:74961310-74961329 | None:intergenic | 45.0% | |
| GAGACTGCACACCAGTAAAA+GGG | - | chr3_3:74961469-74961488 | Msa0472550:intron | 45.0% | |
| ! | CAAAGGGGAAAGGTACGAAA+TGG | - | chr3_3:74961511-74961530 | Msa0472550:intron | 45.0% |
| CATGTTTCTCGAAATGGGAC+AGG | - | chr3_3:74961623-74961642 | Msa0472550:intron | 45.0% | |
| ! | TTTAGAATGCCAGGCTGGAT+AGG | + | chr3_3:74961812-74961831 | None:intergenic | 45.0% |
| ! | CACAATTTAGAATGCCAGGC+TGG | + | chr3_3:74961817-74961836 | None:intergenic | 45.0% |
| GCAATATTGAGGAGGAAACC+TGG | + | chr3_3:74961858-74961877 | None:intergenic | 45.0% | |
| AAGTTCATCGCACAAAGGTC+AGG | - | chr3_3:74961896-74961915 | Msa0472550:CDS | 45.0% | |
| ATTATCTCAGATTCCCCGTC+CGG | - | chr3_3:74962284-74962303 | Msa0472550:intron | 45.0% | |
| TAAGCACATTTCCTGATCCC+CGG | + | chr3_3:74962306-74962325 | None:intergenic | 45.0% | |
| GACATACAACGCAAAACGTC+CGG | + | chr3_3:74962755-74962774 | None:intergenic | 45.0% | |
| GCTTCATAAACATCAGACGG+TGG | + | chr3_3:74963173-74963192 | None:intergenic | 45.0% | |
| !! | CTCGTTTTGATCAGTTGGGT+GGG | + | chr3_3:74963409-74963428 | None:intergenic | 45.0% |
| !! | CGTGCTCGTTTTGATCAGTT+GGG | + | chr3_3:74963413-74963432 | None:intergenic | 45.0% |
| ! | GCCTTCCTTTTGGATTTACC+AGG | + | chr3_3:74963450-74963469 | None:intergenic | 45.0% |
| ! | TGTTTTGTCCGCCTTCCTTT+TGG | + | chr3_3:74963460-74963479 | None:intergenic | 45.0% |
| AAGGAAGGCGGACAAAACAT+CGG | - | chr3_3:74963461-74963480 | Msa0472550:CDS | 45.0% | |
| !! | CAGGGTGCTGAAAAGAAAAG+AGG | - | chr3_3:74963575-74963594 | Msa0472550:intron | 45.0% |
| AGAAAGCTCCAAGTTCCAAG+AGG | - | chr3_3:74963639-74963658 | Msa0472550:CDS | 45.0% | |
| GAAAGCTCCAAGTTCCAAGA+GGG | - | chr3_3:74963640-74963659 | Msa0472550:CDS | 45.0% | |
| TTTCTTAGGCTTTGCCCTCT+TGG | + | chr3_3:74963657-74963676 | None:intergenic | 45.0% | |
| ! | TCGAAACAGGCCTGATAATG+AGG | + | chr3_3:74963896-74963915 | None:intergenic | 45.0% |
| ! | TTATGACGGAGGGAAAAGGC+GGG | + | chr3_3:74960201-74960220 | None:intergenic | 50.0% |
| ! | GCCTTTTCCCTCCGTCATAA+AGG | - | chr3_3:74960201-74960220 | Msa0472550:three_prime_UTR | 50.0% |
| CTGGAGATAGTTCGCCAGAT+TGG | - | chr3_3:74960480-74960499 | Msa0472550:CDS | 50.0% | |
| CCATCTTCACCAGAAGGTTG+AGG | + | chr3_3:74961372-74961391 | None:intergenic | 50.0% | |
| CCTCAACCTTCTGGTGAAGA+TGG | - | chr3_3:74961369-74961388 | Msa0472550:intron | 50.0% | |
| CGAAGTCCATCTTCACCAGA+AGG | + | chr3_3:74961378-74961397 | None:intergenic | 50.0% | |
| ! | TCTGGTGAAGATGGACTTCG+TGG | - | chr3_3:74961378-74961397 | Msa0472550:intron | 50.0% |
| ! | GATGGACTTCGTGGCAATGA+CGG | - | chr3_3:74961387-74961406 | Msa0472550:intron | 50.0% |
| GGAGACTGCACACCAGTAAA+AGG | - | chr3_3:74961468-74961487 | Msa0472550:intron | 50.0% | |
| GTTTCTCGAAATGGGACAGG+TGG | - | chr3_3:74961626-74961645 | Msa0472550:intron | 50.0% | |
| GGCTGGATAGGCAGTCAATA+TGG | + | chr3_3:74961800-74961819 | None:intergenic | 50.0% | |
| ! | TATTGACTGCCTATCCAGCC+TGG | - | chr3_3:74961800-74961819 | Msa0472550:intron | 50.0% |
| TTCATCGCACAAAGGTCAGG+TGG | - | chr3_3:74961899-74961918 | Msa0472550:CDS | 50.0% | |
| TACTCATCTGGTTGTCCCTG+TGG | + | chr3_3:74961998-74962017 | None:intergenic | 50.0% | |
| CAGGCTCTTGTTGAGTGTCA+AGG | - | chr3_3:74962215-74962234 | Msa0472550:intron | 50.0% | |
| GGTGACTCCATAGATCTGAG+TGG | - | chr3_3:74962236-74962255 | Msa0472550:intron | 50.0% | |
| AGTGGTGATATGGGAGCTGT+AGG | - | chr3_3:74962254-74962273 | Msa0472550:CDS | 50.0% | |
| GTGGTGATATGGGAGCTGTA+GGG | - | chr3_3:74962255-74962274 | Msa0472550:CDS | 50.0% | |
| TGATATGGGAGCTGTAGGGA+GGG | - | chr3_3:74962259-74962278 | Msa0472550:CDS | 50.0% | |
| TTATCTCAGATTCCCCGTCC+GGG | - | chr3_3:74962285-74962304 | Msa0472550:intron | 50.0% | |
| ! | GTGATTAGTCAGCCTTGACC+AGG | - | chr3_3:74963061-74963080 | Msa0472550:CDS | 50.0% |
| CTGACGAGGAAGATGGTAAG+AGG | - | chr3_3:74963373-74963392 | Msa0472550:CDS | 50.0% | |
| !! | GTTTTGATCAGTTGGGTGGG+CGG | + | chr3_3:74963406-74963425 | None:intergenic | 50.0% |
| !! | GCTCGTTTTGATCAGTTGGG+TGG | + | chr3_3:74963410-74963429 | None:intergenic | 50.0% |
| !! | GCGTGCTCGTTTTGATCAGT+TGG | + | chr3_3:74963414-74963433 | None:intergenic | 50.0% |
| TGATCAAAACGAGCACGCTG+AGG | - | chr3_3:74963416-74963435 | Msa0472550:CDS | 50.0% | |
| ATTCTTACCAAACCCCGAGC+AGG | - | chr3_3:74963816-74963835 | Msa0472550:intron | 50.0% | |
| AAATTCTCCTGCTCGGGGTT+TGG | + | chr3_3:74963826-74963845 | None:intergenic | 50.0% | |
| GTCACCGGCGAATTAGGAGT+GGG | + | chr3_3:74960660-74960679 | None:intergenic | 55.0% | |
| TGTCACCGGCGAATTAGGAG+TGG | + | chr3_3:74960661-74960680 | None:intergenic | 55.0% | |
| GACAGTGTCACCGGCGAATT+AGG | + | chr3_3:74960666-74960685 | None:intergenic | 55.0% | |
| GCTCGATTCAGACACCGACA+AGG | - | chr3_3:74961071-74961090 | Msa0472550:intron | 55.0% | |
| CGAAATGGGACAGGTGGTGA+TGG | - | chr3_3:74961632-74961651 | Msa0472550:intron | 55.0% | |
| GTGATATGGGAGCTGTAGGG+AGG | - | chr3_3:74962258-74962277 | Msa0472550:CDS | 55.0% | |
| TATCTCAGATTCCCCGTCCG+GGG | - | chr3_3:74962286-74962305 | Msa0472550:intron | 55.0% | |
| ACATTTCCTGATCCCCGGAC+GGG | + | chr3_3:74962301-74962320 | None:intergenic | 55.0% | |
| CACATTTCCTGATCCCCGGA+CGG | + | chr3_3:74962302-74962321 | None:intergenic | 55.0% | |
| ACAACGCAAAACGTCCGGCT+AGG | + | chr3_3:74962750-74962769 | None:intergenic | 55.0% | |
| !! | GGTTAGCTTTGGGCAGACAG+AGG | - | chr3_3:74962912-74962931 | Msa0472550:intron | 55.0% |
| CTTTGGGCAGACAGAGGCAA+AGG | - | chr3_3:74962918-74962937 | Msa0472550:intron | 55.0% | |
| GGCTTTGCCCTCTTGGAACT+TGG | + | chr3_3:74963650-74963669 | None:intergenic | 55.0% | |
| GGTGCCCACTCCTAATTCGC+CGG | - | chr3_3:74960653-74960672 | Msa0472550:intron | 60.0% | |
| CATTTCCTGATCCCCGGACG+GGG | + | chr3_3:74962300-74962319 | None:intergenic | 60.0% | |
| CACGCTGAGGAACAGACACC+TGG | - | chr3_3:74963429-74963448 | Msa0472550:CDS | 60.0% | |
| AGATTCCCCGTCCGGGGATC+AGG | - | chr3_3:74962292-74962311 | Msa0472550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 74960187 | 74963968 | 74960187 | ID=Msa0472550;Name=Msa0472550 |
| chr3_3 | mRNA | 74960187 | 74963968 | 74960187 | ID=Msa0472550-mRNA-1;Parent=Msa0472550;Name=Msa0472550-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74|1|1|1|0.91|0.84|13|289|412 |
| chr3_3 | exon | 74960187 | 74960577 | 74960187 | ID=Msa0472550-mRNA-1:exon:19291;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74960673 | 74960809 | 74960673 | ID=Msa0472550-mRNA-1:exon:19290;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74960946 | 74961021 | 74960946 | ID=Msa0472550-mRNA-1:exon:19289;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74961216 | 74961242 | 74961216 | ID=Msa0472550-mRNA-1:exon:19288;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74961388 | 74961434 | 74961388 | ID=Msa0472550-mRNA-1:exon:19287;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74961820 | 74961937 | 74961820 | ID=Msa0472550-mRNA-1:exon:19286;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74962243 | 74962296 | 74962243 | ID=Msa0472550-mRNA-1:exon:19285;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74962449 | 74962510 | 74962449 | ID=Msa0472550-mRNA-1:exon:19284;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74962633 | 74962885 | 74962633 | ID=Msa0472550-mRNA-1:exon:19283;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74963048 | 74963109 | 74963048 | ID=Msa0472550-mRNA-1:exon:19282;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74963249 | 74963501 | 74963249 | ID=Msa0472550-mRNA-1:exon:19281;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74963638 | 74963723 | 74963638 | ID=Msa0472550-mRNA-1:exon:19280;Parent=Msa0472550-mRNA-1 |
| chr3_3 | exon | 74963933 | 74963968 | 74963933 | ID=Msa0472550-mRNA-1:exon:19279;Parent=Msa0472550-mRNA-1 |
| chr3_3 | five_prime_UTR | 74963933 | 74963968 | 74963933 | ID=Msa0472550-mRNA-1:five_prime_utr;Parent=Msa0472550-mRNA-1 |
| chr3_3 | five_prime_UTR | 74963686 | 74963723 | 74963686 | ID=Msa0472550-mRNA-1:five_prime_utr;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74963638 | 74963685 | 74963638 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74963249 | 74963501 | 74963249 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74963048 | 74963109 | 74963048 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74962633 | 74962885 | 74962633 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74962449 | 74962510 | 74962449 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74962243 | 74962296 | 74962243 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74961820 | 74961937 | 74961820 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74961388 | 74961434 | 74961388 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74961216 | 74961242 | 74961216 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74960946 | 74961021 | 74960946 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74960673 | 74960809 | 74960673 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | CDS | 74960476 | 74960577 | 74960476 | ID=Msa0472550-mRNA-1:cds;Parent=Msa0472550-mRNA-1 |
| chr3_3 | three_prime_UTR | 74960187 | 74960475 | 74960187 | ID=Msa0472550-mRNA-1:three_prime_utr;Parent=Msa0472550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
