Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405930 | XP_003602435.1 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405930 | sp|Q9FLU1|BIN4_ARATH | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.27e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405930 | G7J9P4 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa1405930 | 0.806754 | 7.054827e-50 | -8.615850e-47 |
| Msa0029270 | Msa1405930 | 0.816992 | 4.155299e-52 | -8.615850e-47 |
| Msa0032090 | Msa1405930 | 0.840060 | 1.091165e-57 | -8.615850e-47 |
| Msa0032430 | Msa1405930 | 0.849096 | 4.026885e-60 | -8.615850e-47 |
| Msa0032920 | Msa1405930 | -0.804107 | 2.531850e-49 | -8.615850e-47 |
| Msa0040690 | Msa1405930 | 0.810679 | 1.022649e-50 | -8.615850e-47 |
| Msa0054480 | Msa1405930 | 0.808045 | 3.755833e-50 | -8.615850e-47 |
| Msa0061290 | Msa1405930 | 0.832066 | 1.168611e-55 | -8.615850e-47 |
| Msa0070700 | Msa1405930 | 0.820924 | 5.304689e-53 | -8.615850e-47 |
| Msa0079380 | Msa1405930 | 0.844309 | 8.189796e-59 | -8.615850e-47 |
| Msa0105370 | Msa1405930 | 0.805721 | 1.164528e-49 | -8.615850e-47 |
| Msa0115080 | Msa1405930 | 0.837113 | 6.294801e-57 | -8.615850e-47 |
| Msa0118590 | Msa1405930 | 0.820035 | 8.483523e-53 | -8.615850e-47 |
| Msa1358250 | Msa1405930 | 0.803877 | 2.825820e-49 | -8.615850e-47 |
| Msa1374120 | Msa1405930 | 0.817352 | 3.447072e-52 | -8.615850e-47 |
| Msa1382560 | Msa1405930 | 0.801654 | 8.130425e-49 | -8.615850e-47 |
| Msa1382620 | Msa1405930 | 0.833334 | 5.661393e-56 | -8.615850e-47 |
| Msa1390440 | Msa1405930 | 0.822269 | 2.593037e-53 | -8.615850e-47 |
| Msa1392780 | Msa1405930 | 0.808894 | 2.475232e-50 | -8.615850e-47 |
| Msa1405930 | Msa1440310 | 0.828224 | 1.012334e-54 | -8.615850e-47 |
| Msa1405930 | Msa1464810 | 0.800915 | 1.151852e-48 | -8.615850e-47 |
| Msa0615440 | Msa1405930 | 0.813483 | 2.502229e-51 | -8.615850e-47 |
| Msa0649050 | Msa1405930 | 0.808382 | 3.183458e-50 | -8.615850e-47 |
| Msa0689260 | Msa1405930 | 0.805709 | 1.171240e-49 | -8.615850e-47 |
| Msa0698490 | Msa1405930 | 0.817172 | 3.785391e-52 | -8.615850e-47 |
| Msa0698660 | Msa1405930 | 0.811335 | 7.371847e-51 | -8.615850e-47 |
| Msa0707250 | Msa1405930 | 0.804861 | 1.763096e-49 | -8.615850e-47 |
| Msa0757830 | Msa1405930 | 0.800119 | 1.673779e-48 | -8.615850e-47 |
| Msa0124060 | Msa1405930 | 0.816504 | 5.343651e-52 | -8.615850e-47 |
| Msa0127050 | Msa1405930 | 0.820048 | 8.424605e-53 | -8.615850e-47 |
| Msa0144370 | Msa1405930 | 0.824339 | 8.515818e-54 | -8.615850e-47 |
| Msa0152350 | Msa1405930 | 0.826461 | 2.678354e-54 | -8.615850e-47 |
| Msa0168500 | Msa1405930 | 0.812215 | 4.741639e-51 | -8.615850e-47 |
| Msa0169310 | Msa1405930 | 0.818705 | 1.704937e-52 | -8.615850e-47 |
| Msa0170200 | Msa1405930 | 0.811132 | 8.157470e-51 | -8.615850e-47 |
| Msa0172070 | Msa1405930 | 0.844065 | 9.522017e-59 | -8.615850e-47 |
| Msa0175750 | Msa1405930 | 0.801371 | 9.293038e-49 | -8.615850e-47 |
| Msa0232080 | Msa1405930 | 0.800295 | 1.540810e-48 | -8.615850e-47 |
| Msa1265890 | Msa1405930 | 0.814175 | 1.761429e-51 | -8.615850e-47 |
| Msa1297230 | Msa1405930 | 0.819135 | 1.361336e-52 | -8.615850e-47 |
| Msa1298220 | Msa1405930 | 0.806115 | 9.621849e-50 | -8.615850e-47 |
| Msa1329980 | Msa1405930 | 0.802540 | 5.346207e-49 | -8.615850e-47 |
| Msa1330410 | Msa1405930 | 0.838705 | 2.453336e-57 | -8.615850e-47 |
| Msa1343430 | Msa1405930 | 0.800416 | 1.456484e-48 | -8.615850e-47 |
| Msa0385300 | Msa1405930 | 0.802706 | 4.940760e-49 | -8.615850e-47 |
| Msa0449210 | Msa1405930 | 0.823645 | 1.238667e-53 | -8.615850e-47 |
| Msa0467490 | Msa1405930 | 0.819758 | 9.817709e-53 | -8.615850e-47 |
| Msa0472550 | Msa1405930 | 0.978015 | 5.988706e-145 | -8.615850e-47 |
| Msa0472620 | Msa1405930 | 0.971081 | 1.321878e-132 | -8.615850e-47 |
| Msa1006840 | Msa1405930 | 0.801707 | 7.931196e-49 | -8.615850e-47 |
| Msa1012740 | Msa1405930 | 0.827516 | 1.498131e-54 | -8.615850e-47 |
| Msa1043690 | Msa1405930 | 0.810926 | 9.040209e-51 | -8.615850e-47 |
| Msa0258390 | Msa1405930 | 0.842858 | 2.000118e-58 | -8.615850e-47 |
| Msa0264010 | Msa1405930 | 0.803391 | 3.564609e-49 | -8.615850e-47 |
| Msa0287740 | Msa1405930 | 0.805002 | 1.647288e-49 | -8.615850e-47 |
| Msa0292400 | Msa1405930 | 0.801784 | 7.645267e-49 | -8.615850e-47 |
| Msa0297610 | Msa1405930 | 0.818084 | 2.357022e-52 | -8.615850e-47 |
| Msa0335730 | Msa1405930 | 0.886027 | 4.885761e-72 | -8.615850e-47 |
| Msa0357900 | Msa1405930 | 0.815423 | 9.315971e-52 | -8.615850e-47 |
| Msa1132840 | Msa1405930 | 0.802123 | 6.512424e-49 | -8.615850e-47 |
| Msa1148910 | Msa1405930 | 0.823887 | 1.087187e-53 | -8.615850e-47 |
| Msa1155170 | Msa1405930 | -0.816719 | 4.783842e-52 | -8.615850e-47 |
| Msa1170670 | Msa1405930 | 0.995949 | 1.121342e-221 | -8.615850e-47 |
| Msa1171710 | Msa1405930 | 0.810773 | 9.756580e-51 | -8.615850e-47 |
| Msa1206460 | Msa1405930 | 0.800435 | 1.443477e-48 | -8.615850e-47 |
| Msa1218450 | Msa1405930 | 0.815149 | 1.071701e-51 | -8.615850e-47 |
| Msa1220280 | Msa1405930 | 0.813595 | 2.364483e-51 | -8.615850e-47 |
| Msa1220380 | Msa1405930 | 0.805843 | 1.097650e-49 | -8.615850e-47 |
| Msa0511370 | Msa1405930 | 0.807815 | 4.204009e-50 | -8.615850e-47 |
| Msa0517070 | Msa1405930 | 0.918804 | 9.915361e-87 | -8.615850e-47 |
| Msa0523120 | Msa1405930 | 0.808926 | 2.435619e-50 | -8.615850e-47 |
| Msa0532070 | Msa1405930 | 0.827015 | 1.975982e-54 | -8.615850e-47 |
| Msa0554920 | Msa1405930 | 0.806274 | 8.908216e-50 | -8.615850e-47 |
| Msa0569200 | Msa1405930 | 0.811235 | 7.748670e-51 | -8.615850e-47 |
| Msa0588360 | Msa1405930 | 0.809952 | 1.466812e-50 | -8.615850e-47 |
| Msa0891710 | Msa1405930 | 0.811161 | 8.040502e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405930 | MtrunA17_Chr3g0128321 | 96.394 | 416 | 11 | 2 | 1 | 412 | 1 | 416 | 0.0 | 797 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405930 | AT5G24630.5 | 59.804 | 204 | 70 | 5 | 208 | 409 | 242 | 435 | 1.72e-65 | 216 |
| Msa1405930 | AT5G24630.12 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa1405930 | AT5G24630.11 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa1405930 | AT5G24630.8 | 63.934 | 183 | 55 | 4 | 228 | 409 | 225 | 397 | 3.81e-65 | 214 |
| Msa1405930 | AT5G24630.10 | 63.934 | 183 | 55 | 4 | 228 | 409 | 261 | 433 | 7.85e-65 | 214 |
| Msa1405930 | AT5G24630.2 | 63.934 | 183 | 55 | 4 | 228 | 409 | 249 | 421 | 9.29e-65 | 214 |
| Msa1405930 | AT5G24630.9 | 63.934 | 183 | 55 | 4 | 228 | 409 | 265 | 437 | 1.14e-64 | 214 |
| Msa1405930 | AT5G24630.4 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa1405930 | AT5G24630.7 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa1405930 | AT5G24630.3 | 63.934 | 183 | 55 | 4 | 228 | 409 | 267 | 439 | 1.20e-64 | 214 |
| Msa1405930 | AT5G24630.1 | 63.934 | 183 | 55 | 4 | 228 | 409 | 268 | 440 | 1.23e-64 | 214 |
| Msa1405930 | AT5G24630.6 | 63.934 | 183 | 55 | 4 | 228 | 409 | 271 | 443 | 1.29e-64 | 214 |
Find 111 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTACCCTTGTTCTTAT+TGG | 0.135839 | tig0023174:+44952 | None:intergenic |
| GCTTTCTTCTTTGCTGTCTT+TGG | 0.190175 | tig0023174:+42113 | None:intergenic |
| GAAGACTGCACACCAGTAAA+AGG | 0.264190 | tig0023174:-44268 | Msa1405930:CDS |
| CTTTCTTTGACTCATTTCTT+AGG | 0.266328 | tig0023174:+42068 | None:intergenic |
| TTATTATGTTCCTCATTATC+AGG | 0.269735 | tig0023174:-41853 | Msa1405930:three_prime_UTR |
| CATAGATCTGAGTGGTGATA+TGG | 0.271690 | tig0023174:-43492 | Msa1405930:CDS |
| GACAGTGTCACCGGCGAATT+AGG | 0.285567 | tig0023174:+45073 | None:intergenic |
| TTTCTTAGGCTTTGCCCTCT+TGG | 0.289065 | tig0023174:+42082 | None:intergenic |
| CGGAAAATCTCCATCCAAAA+AGG | 0.297047 | tig0023174:-44329 | Msa1405930:CDS |
| TTATTGGCCTTAAGATTCTT+AGG | 0.303993 | tig0023174:+44968 | None:intergenic |
| AGATTGGTTGCGTTCTTATC+AGG | 0.332376 | tig0023174:-45240 | Msa1405930:intron |
| TGATAATGAGGAACATAATA+AGG | 0.341133 | tig0023174:+41855 | None:intergenic |
| AAATTCTCCTGCTCGGGGTT+TGG | 0.345340 | tig0023174:+41913 | None:intergenic |
| TGTTTATGAAGCTGAAACTA+TGG | 0.348887 | tig0023174:-42555 | Msa1405930:CDS |
| GGCTTTGCCCTCTTGGAACT+TGG | 0.354261 | tig0023174:+42089 | None:intergenic |
| CATATCACCACTCAGATCTA+TGG | 0.355840 | tig0023174:+43493 | None:intergenic |
| GAAACTAAACCTCAACCTTC+TGG | 0.374230 | tig0023174:-44376 | Msa1405930:CDS |
| AGATTCCCCGTCCGGGGATC+AGG | 0.383118 | tig0023174:-43444 | Msa1405930:CDS |
| TTTATGCTCTGCTTCCTTGT+CGG | 0.385678 | tig0023174:+44651 | None:intergenic |
| GTGTACAGTTTCTTTCTTGT+GGG | 0.388627 | tig0023174:+44869 | None:intergenic |
| TTAAGATTCTTAGGTGACTT+AGG | 0.394502 | tig0023174:+44977 | None:intergenic |
| ATTCTTACATTAGGTACAAC+AGG | 0.403661 | tig0023174:+44044 | None:intergenic |
| CGATTTACCATCTCTGTCAT+TGG | 0.404669 | tig0023174:+41969 | None:intergenic |
| CACAATGAGTGTATCGAAAC+AGG | 0.406956 | tig0023174:+41830 | None:intergenic |
| GACATACAACGCAAAACGTC+CGG | 0.449657 | tig0023174:+42984 | None:intergenic |
| AAAACAAAGGTTAATGCAAA+GGG | 0.449941 | tig0023174:-44241 | Msa1405930:CDS |
| ATTATCTCAGATTCCCCGTC+CGG | 0.450226 | tig0023174:-43452 | Msa1405930:CDS |
| CCTCAACCTTCTGGTGAAGA+TGG | 0.453566 | tig0023174:-44367 | Msa1405930:CDS |
| CAGCTCCCACATTGAATGAA+TGG | 0.455114 | tig0023174:+44462 | None:intergenic |
| ACCTTTATGACGGAGGGAAA+AGG | 0.461841 | tig0023174:+45534 | None:intergenic |
| TGATAAGAACGCAACCAATC+TGG | 0.466147 | tig0023174:+45242 | None:intergenic |
| CGTGTACAGTTTCTTTCTTG+TGG | 0.470835 | tig0023174:+44868 | None:intergenic |
| AACTGAAGATCATATTGATC+AGG | 0.477695 | tig0023174:-44401 | Msa1405930:CDS |
| CTGGAGATAGTTCGCCAGAT+TGG | 0.481862 | tig0023174:-45256 | Msa1405930:CDS |
| TTATCTCAGATTCCCCGTCC+GGG | 0.484353 | tig0023174:-43451 | Msa1405930:CDS |
| TAAGTCACCTAAGAATCTTA+AGG | 0.484727 | tig0023174:-44975 | Msa1405930:CDS |
| CCATCTTCACCAGAAGGTTG+AGG | 0.485121 | tig0023174:+44367 | None:intergenic |
| GAAGCTGAAACTATGGTTGA+AGG | 0.487381 | tig0023174:-42548 | Msa1405930:intron |
| ATAGATCTGAGTGGTGATAT+GGG | 0.488389 | tig0023174:-43491 | Msa1405930:CDS |
| GTACTATGATGCAGGAAAGA+AGG | 0.488549 | tig0023174:-44704 | Msa1405930:intron |
| TTTGATTCTGACGAGGAAGA+TGG | 0.492638 | tig0023174:-42370 | Msa1405930:CDS |
| CAATGACAGAGATGGTAAAT+CGG | 0.497969 | tig0023174:-41968 | Msa1405930:three_prime_UTR |
| ATGTGAAAAGGGACATTGGA+TGG | 0.498992 | tig0023174:-42400 | Msa1405930:intron |
| CAGGCTCTTGTTGAGTGTCA+AGG | 0.504953 | tig0023174:-43521 | Msa1405930:CDS |
| ACATTTCCTGATCCCCGGAC+GGG | 0.507819 | tig0023174:+43438 | None:intergenic |
| CGAAATGGGACAGGTGGTGA+TGG | 0.508948 | tig0023174:-44104 | Msa1405930:intron |
| GTGATATGGGAGCTGTAGGG+AGG | 0.516201 | tig0023174:-43478 | Msa1405930:CDS |
| CTGACGAGGAAGATGGTAAG+AGG | 0.521899 | tig0023174:-42363 | Msa1405930:CDS |
| AGACACCTGGTAAATCCAAA+AGG | 0.527784 | tig0023174:-42294 | Msa1405930:CDS |
| ATCTTCCTCGTCAGAATCAA+AGG | 0.528675 | tig0023174:+42372 | None:intergenic |
| TTTCATGTGAAAAGGGACAT+TGG | 0.535477 | tig0023174:-42404 | Msa1405930:intron |
| GAAAACAAAGGTTAATGCAA+AGG | 0.535733 | tig0023174:-44242 | Msa1405930:CDS |
| AAGACTGCACACCAGTAAAA+GGG | 0.542093 | tig0023174:-44267 | Msa1405930:CDS |
| AAGGTTAATGCAAAGGGGAA+AGG | 0.542305 | tig0023174:-44235 | Msa1405930:intron |
| TACAGTTTCTTTCTTGTGGG+TGG | 0.543570 | tig0023174:+44872 | None:intergenic |
| TCTGGTGAAGATGGACTTCG+TGG | 0.547152 | tig0023174:-44358 | Msa1405930:CDS |
| CTAATTACCTTTATGACGGA+GGG | 0.548331 | tig0023174:+45528 | None:intergenic |
| TCGAAACAGGCCTGATAATG+AGG | 0.550571 | tig0023174:+41843 | None:intergenic |
| GATGGACTTCGTGGCAATGA+CGG | 0.550838 | tig0023174:-44349 | Msa1405930:CDS |
| ACAACGCAAAACGTCCGGCT+AGG | 0.551306 | tig0023174:+42989 | None:intergenic |
| AGTGGTGATATGGGAGCTGT+AGG | 0.551651 | tig0023174:-43482 | Msa1405930:CDS |
| ATTCTTACCAAACCCCGAGC+AGG | 0.555541 | tig0023174:-41920 | Msa1405930:three_prime_UTR |
| CATTTCCTGATCCCCGGACG+GGG | 0.562368 | tig0023174:+43439 | None:intergenic |
| AGATCTAATTACCTTTATGA+CGG | 0.566384 | tig0023174:+45524 | None:intergenic |
| GGTAAATGAAGATGAGAAAG+CGG | 0.573759 | tig0023174:+45295 | None:intergenic |
| CACATTTCCTGATCCCCGGA+CGG | 0.578180 | tig0023174:+43437 | None:intergenic |
| GAATCAGATGACAGTGTCAC+CGG | 0.579458 | tig0023174:+45064 | None:intergenic |
| AGAAAGCTCCAAGTTCCAAG+AGG | 0.587132 | tig0023174:-42097 | Msa1405930:CDS |
| CTGTATGAAGTCGTTCATGA+TGG | 0.587502 | tig0023174:+42595 | None:intergenic |
| TAAGCACATTTCCTGATCCC+CGG | 0.588249 | tig0023174:+43433 | None:intergenic |
| CACGCTGAGGAACAGACACC+TGG | 0.588572 | tig0023174:-42307 | Msa1405930:CDS |
| CAGGGTGCTGAAAAGAAAAG+AGG | 0.588839 | tig0023174:-42161 | Msa1405930:CDS |
| CTTTGGGCAGACAGAGGCAA+AGG | 0.589063 | tig0023174:-42818 | Msa1405930:intron |
| TCTAATTACCTTTATGACGG+AGG | 0.590426 | tig0023174:+45527 | None:intergenic |
| GCTATGATCACGACATGACT+CGG | 0.590906 | tig0023174:+44429 | None:intergenic |
| TCTTAAGGCCAATAAGAACA+AGG | 0.596455 | tig0023174:-44960 | Msa1405930:CDS |
| GGTGCCCACTCCTAATTCGC+CGG | 0.598921 | tig0023174:-45083 | Msa1405930:CDS |
| ACTTTCTCAGAAAGCATCAA+AGG | 0.599098 | tig0023174:+43859 | None:intergenic |
| GCGACTATCATGTAAATACT+CGG | 0.599318 | tig0023174:+45042 | None:intergenic |
| TATCTCAGATTCCCCGTCCG+GGG | 0.600901 | tig0023174:-43450 | Msa1405930:CDS |
| ACCTGGTAAATCCAAAAGGA+AGG | 0.601971 | tig0023174:-42290 | Msa1405930:CDS |
| AAGCATCAAAGGCAATATTG+AGG | 0.602144 | tig0023174:+43870 | None:intergenic |
| GTGGTGATATGGGAGCTGTA+GGG | 0.605513 | tig0023174:-43481 | Msa1405930:CDS |
| GAAATGTGCTTAGATTTGAA+AGG | 0.606376 | tig0023174:-43422 | Msa1405930:intron |
| GAAAGCTCCAAGTTCCAAGA+GGG | 0.606806 | tig0023174:-42096 | Msa1405930:CDS |
| TCAGCTTCATAAACATCAGA+CGG | 0.609363 | tig0023174:+42563 | None:intergenic |
| CGAAGTCCATCTTCACCAGA+AGG | 0.616356 | tig0023174:+44361 | None:intergenic |
| AAAGAAACTGTACACGCGGA+AGG | 0.621325 | tig0023174:-44861 | Msa1405930:CDS |
| AGGAATCCATTCATTCAATG+TGG | 0.621403 | tig0023174:-44468 | Msa1405930:CDS |
| AAACATCTATAGTTCCTAGC+CGG | 0.625002 | tig0023174:-43003 | Msa1405930:CDS |
| TGATATGGGAGCTGTAGGGA+GGG | 0.625544 | tig0023174:-43477 | Msa1405930:CDS |
| GGAATCCATTCATTCAATGT+GGG | 0.629446 | tig0023174:-44467 | Msa1405930:CDS |
| CAATTTACCAATGACAGAGA+TGG | 0.633181 | tig0023174:-41976 | Msa1405930:three_prime_UTR |
| TTTATGACGGAGGGAAAAGG+CGG | 0.633259 | tig0023174:+45537 | None:intergenic |
| GGTTAGCTTTGGGCAGACAG+AGG | 0.635444 | tig0023174:-42824 | Msa1405930:CDS |
| CAAGAAAGAAACTGTACACG+CGG | 0.635708 | tig0023174:-44865 | Msa1405930:CDS |
| CTATGATGCAGGAAAGAAGG+AGG | 0.639245 | tig0023174:-44701 | Msa1405930:intron |
| CATCAAAGGCAATATTGAGG+AGG | 0.641549 | tig0023174:+43873 | None:intergenic |
| TGTCACCGGCGAATTAGGAG+TGG | 0.641843 | tig0023174:+45078 | None:intergenic |
| GTCACCGGCGAATTAGGAGT+GGG | 0.658496 | tig0023174:+45079 | None:intergenic |
| CTTAAGGCCAATAAGAACAA+GGG | 0.659601 | tig0023174:-44959 | Msa1405930:CDS |
| TGAGAAAGTTCATCGCACAA+AGG | 0.671129 | tig0023174:-43845 | Msa1405930:intron |
| TTATGACGGAGGGAAAAGGC+GGG | 0.671583 | tig0023174:+45538 | None:intergenic |
| AAGGAAGGCGGACAAAACAT+CGG | 0.672092 | tig0023174:-42275 | Msa1405930:intron |
| AGTAAAAGGGAAGAAAACAA+AGG | 0.673109 | tig0023174:-44254 | Msa1405930:CDS |
| TGATCAAAACGAGCACGCTG+AGG | 0.690459 | tig0023174:-42320 | Msa1405930:CDS |
| GCTTCATAAACATCAGACGG+TGG | 0.691289 | tig0023174:+42566 | None:intergenic |
| TGGTAAATCCAAAAGGAAGG+CGG | 0.692323 | tig0023174:-42287 | Msa1405930:CDS |
| GCTCGATTCAGACACCGACA+AGG | 0.693845 | tig0023174:-44665 | Msa1405930:CDS |
| AAACAAAGGTTAATGCAAAG+GGG | 0.698410 | tig0023174:-44240 | Msa1405930:CDS |
| GGTGACTCCATAGATCTGAG+TGG | 0.759776 | tig0023174:-43500 | Msa1405930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAACTTTTAAGAAAAAA+AGG | - | tig0023174:43142-43161 | Msa1405930:intron | 10.0% |
| !! | ATAAGTAAATTAAATAAATG+AGG | + | tig0023174:44642-44661 | None:intergenic | 10.0% |
| !!! | CTTGATATTTGATTTTAATT+TGG | - | tig0023174:42515-42534 | Msa1405930:intron | 15.0% |
| !!! | ATATTATTTTACCGAAAAAA+AGG | - | tig0023174:44871-44890 | Msa1405930:CDS | 15.0% |
| !!! | TCATATTTTTTCCTTTTTTT+CGG | + | tig0023174:44885-44904 | None:intergenic | 15.0% |
| !!! | TTATCTTTCAGATTTTAGTT+CGG | - | tig0023174:41887-41906 | Msa1405930:three_prime_UTR | 20.0% |
| !!! | GCTTATAATTTTGTTTTGAA+TGG | - | tig0023174:43676-43695 | Msa1405930:intron | 20.0% |
| !!! | TTTTTCATGAAAAAAGGAAA+TGG | + | tig0023174:43762-43781 | None:intergenic | 20.0% |
| !!! | ATTTCCTTTTTTCATGAAAA+AGG | - | tig0023174:43761-43780 | Msa1405930:intron | 20.0% |
| !!! | ATCTTACCTGTTTTAAAAAA+AGG | - | tig0023174:44117-44136 | Msa1405930:intron | 20.0% |
| !!! | TCTTACCTGTTTTAAAAAAA+GGG | - | tig0023174:44118-44137 | Msa1405930:intron | 20.0% |
| !! | ACATTAGAACAAATATAACT+TGG | + | tig0023174:44214-44233 | None:intergenic | 20.0% |
| !! | AAGAAAATTACGACTTATAA+TGG | + | tig0023174:44239-44258 | None:intergenic | 20.0% |
| !! | AAATAAAGATTTGAACAATC+AGG | + | tig0023174:44295-44314 | None:intergenic | 20.0% |
| !!! | CAAATCTTTATTTTCTTTTC+AGG | - | tig0023174:44302-44321 | Msa1405930:CDS | 20.0% |
| !! | AAAGCAATATTTAAAAGGTA+TGG | + | tig0023174:44465-44484 | None:intergenic | 20.0% |
| !! | GTATGAAAGCAATATTTAAA+AGG | + | tig0023174:44470-44489 | None:intergenic | 20.0% |
| !! | AGTTACAGGTTAAATATTAA+TGG | + | tig0023174:44708-44727 | None:intergenic | 20.0% |
| !!! | TCTATTATTTTCATGTGAAA+AGG | - | tig0023174:44927-44946 | Msa1405930:CDS | 20.0% |
| !!! | CTATTATTTTCATGTGAAAA+GGG | - | tig0023174:44928-44947 | Msa1405930:CDS | 20.0% |
| ! | AGATCTAATTACCTTTATGA+CGG | + | tig0023174:41818-41837 | None:intergenic | 25.0% |
| ! | ATAATCACAATACAAATAGC+AGG | + | tig0023174:42827-42846 | None:intergenic | 25.0% |
| !!! | TATACCAAATGTTTTTGCAT+AGG | - | tig0023174:42851-42870 | Msa1405930:intron | 25.0% |
| !! | CAATATGATCTTCAGTTTTT+GGG | + | tig0023174:42935-42954 | None:intergenic | 25.0% |
| !! | TCAATATGATCTTCAGTTTT+TGG | + | tig0023174:42936-42955 | None:intergenic | 25.0% |
| ! | AAAACAAAGGTTAATGCAAA+GGG | - | tig0023174:43098-43117 | Msa1405930:intron | 25.0% |
| ! | AGAAACATGTATAAATGGTA+AGG | + | tig0023174:43215-43234 | None:intergenic | 25.0% |
| ! | TTTCGAGAAACATGTATAAA+TGG | + | tig0023174:43220-43239 | None:intergenic | 25.0% |
| ! | TTTATACATGTTTCTCGAAA+TGG | - | tig0023174:43220-43239 | Msa1405930:intron | 25.0% |
| ! | TTATACATGTTTCTCGAAAT+GGG | - | tig0023174:43221-43240 | Msa1405930:intron | 25.0% |
| ! | AACAATGTCATTCTTACATT+AGG | + | tig0023174:43307-43326 | None:intergenic | 25.0% |
| !! | CCATGCTGTAAAATATTTTT+AGG | + | tig0023174:43340-43359 | None:intergenic | 25.0% |
| !! | CCTAAAAATATTTTACAGCA+TGG | - | tig0023174:43337-43356 | Msa1405930:intron | 25.0% |
| !!! | TGTTTGGTTTTATAGTTGTA+TGG | - | tig0023174:43558-43577 | Msa1405930:intron | 25.0% |
| !!! | GTTTGGTTTTATAGTTGTAT+GGG | - | tig0023174:43559-43578 | Msa1405930:intron | 25.0% |
| ! | TCGAAAACATATAAATTTCG+TGG | - | tig0023174:43634-43653 | Msa1405930:intron | 25.0% |
| !!! | GTTTCCTTTTTCATGAAAAA+AGG | + | tig0023174:43768-43787 | None:intergenic | 25.0% |
| ! | AAAATAGCTAAGCTGTATTA+TGG | + | tig0023174:44046-44065 | None:intergenic | 25.0% |
| !!! | AGATTCCCTTTTTTTAAAAC+AGG | + | tig0023174:44126-44145 | None:intergenic | 25.0% |
| ! | GAAATCAAAATGTCAAAAAG+AGG | + | tig0023174:44187-44206 | None:intergenic | 25.0% |
| !! | TTTCTTCTTCTTTTTCTTTC+AGG | - | tig0023174:44494-44513 | Msa1405930:intron | 25.0% |
| ! | AAGTAAAATCTAGACAACAA+CGG | + | tig0023174:44548-44567 | None:intergenic | 25.0% |
| ! | TCTATCTGAAAATAAGTTAC+AGG | + | tig0023174:44722-44741 | None:intergenic | 25.0% |
| !!! | TGTAACTTATTTTCAGATAG+AGG | - | tig0023174:44721-44740 | Msa1405930:intron | 25.0% |
| ! | TAAAATCCTCAGTTAATTGT+TGG | + | tig0023174:44830-44849 | None:intergenic | 25.0% |
| !! | ATAATATTTAAAGCAGCACT+AGG | + | tig0023174:44858-44877 | None:intergenic | 25.0% |
| ! | AAGAAAAGAGGTAAAAATAC+TGG | - | tig0023174:45190-45209 | Msa1405930:intron | 25.0% |
| !!! | TATTTTTAAATTCTCCTGCT+CGG | + | tig0023174:45436-45455 | None:intergenic | 25.0% |
| !! | TGATAATGAGGAACATAATA+AGG | + | tig0023174:45487-45506 | None:intergenic | 25.0% |
| ! | TTATTATGTTCCTCATTATC+AGG | - | tig0023174:45486-45505 | Msa1405930:intron | 25.0% |
| GAACGAAAAACAAGTGTATA+AGG | + | tig0023174:42009-42028 | None:intergenic | 30.0% | |
| TTGTGCAATACTAACATCAT+TGG | - | tig0023174:42209-42228 | Msa1405930:intron | 30.0% | |
| !! | TTACACATTTTTGTGCTACT+AGG | - | tig0023174:42235-42254 | Msa1405930:intron | 30.0% |
| TTAAGATTCTTAGGTGACTT+AGG | + | tig0023174:42365-42384 | None:intergenic | 30.0% | |
| TAAGTCACCTAAGAATCTTA+AGG | - | tig0023174:42364-42383 | Msa1405930:CDS | 30.0% | |
| !! | TTATTGGCCTTAAGATTCTT+AGG | + | tig0023174:42374-42393 | None:intergenic | 30.0% |
| GTAAAAATAACACTCTCGAA+TGG | + | tig0023174:42601-42620 | None:intergenic | 30.0% | |
| CTAACATTTAAAGATGCGAT+GGG | + | tig0023174:42720-42739 | None:intergenic | 30.0% | |
| ATTGTGTCAAAAATATGGGT+TGG | - | tig0023174:42795-42814 | Msa1405930:intron | 30.0% | |
| !!! | TCAAAAATATGGGTTGGTTT+TGG | - | tig0023174:42801-42820 | Msa1405930:intron | 30.0% |
| GATTCCTATGCAAAAACATT+TGG | + | tig0023174:42858-42877 | None:intergenic | 30.0% | |
| AACTGAAGATCATATTGATC+AGG | - | tig0023174:42938-42957 | Msa1405930:intron | 30.0% | |
| !! | TTTGTTTTCTTCCCTTTTAC+TGG | + | tig0023174:43086-43105 | None:intergenic | 30.0% |
| AGTAAAAGGGAAGAAAACAA+AGG | - | tig0023174:43085-43104 | Msa1405930:intron | 30.0% | |
| GAAAACAAAGGTTAATGCAA+AGG | - | tig0023174:43097-43116 | Msa1405930:intron | 30.0% | |
| AAACAAAGGTTAATGCAAAG+GGG | - | tig0023174:43099-43118 | Msa1405930:intron | 30.0% | |
| CATGCATATGGATATGAAAT+AGG | - | tig0023174:43184-43203 | Msa1405930:intron | 30.0% | |
| ATTCTTACATTAGGTACAAC+AGG | + | tig0023174:43298-43317 | None:intergenic | 30.0% | |
| TTGTTCATGTATCAAAGTGA+CGG | + | tig0023174:43363-43382 | None:intergenic | 30.0% | |
| AAAACCAAACATGTAGCAAA+GGG | + | tig0023174:43549-43568 | None:intergenic | 30.0% | |
| TAAAACCAAACATGTAGCAA+AGG | + | tig0023174:43550-43569 | None:intergenic | 30.0% | |
| CATGTTTAAATACTACCACA+GGG | - | tig0023174:43583-43602 | Msa1405930:intron | 30.0% | |
| GAAATGTGCTTAGATTTGAA+AGG | - | tig0023174:43917-43936 | Msa1405930:intron | 30.0% | |
| !! | ACACTACTTTTGTCTAATAG+TGG | - | tig0023174:44262-44281 | Msa1405930:CDS | 30.0% |
| AAAGATTTGAACAATCAGGT+AGG | + | tig0023174:44291-44310 | None:intergenic | 30.0% | |
| GTAATCTGCATTTATCATCA+CGG | - | tig0023174:44387-44406 | Msa1405930:CDS | 30.0% | |
| AAGGTATGGTATCTTAATCA+TGG | + | tig0023174:44451-44470 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTTCAGGTTAGCTT+TGG | - | tig0023174:44504-44523 | Msa1405930:intron | 30.0% |
| !!! | TTTTCTTTCAGGTTAGCTTT+GGG | - | tig0023174:44505-44524 | Msa1405930:intron | 30.0% |
| TAAATATGTCCGAATACATC+TGG | - | tig0023174:44587-44606 | Msa1405930:intron | 30.0% | |
| AGTAGTAATCCAGATGTATT+CGG | + | tig0023174:44599-44618 | None:intergenic | 30.0% | |
| ! | ATTTTACAAAATCCTGGTCA+AGG | + | tig0023174:44679-44698 | None:intergenic | 30.0% |
| ! | GACCAGGATTTTGTAAAATA+CGG | - | tig0023174:44680-44699 | Msa1405930:CDS | 30.0% |
| TGTTTATGAAGCTGAAACTA+TGG | - | tig0023174:44784-44803 | Msa1405930:intron | 30.0% | |
| AATCTAAACCAAAAGCAACT+AGG | + | tig0023174:45097-45116 | None:intergenic | 30.0% | |
| ! | GTATTGATGATTGAAATTGC+TGG | - | tig0023174:45122-45141 | Msa1405930:intron | 30.0% |
| TTGCTGAAAATTTCGAAACA+GGG | - | tig0023174:45160-45179 | Msa1405930:intron | 30.0% | |
| AAAAGAGGTAAAAATACTGG+AGG | - | tig0023174:45193-45212 | Msa1405930:intron | 30.0% | |
| CTTTCTTTGACTCATTTCTT+AGG | + | tig0023174:45274-45293 | None:intergenic | 30.0% | |
| ! | ATTTTTAAATTCTCCTGCTC+GGG | + | tig0023174:45435-45454 | None:intergenic | 30.0% |
| ! | CTAATTACCTTTATGACGGA+GGG | + | tig0023174:41814-41833 | None:intergenic | 35.0% |
| TCTAATTACCTTTATGACGG+AGG | + | tig0023174:41815-41834 | None:intergenic | 35.0% | |
| CAAATGATCGAACAGGTAAT+GGG | + | tig0023174:41969-41988 | None:intergenic | 35.0% | |
| CGAAAAACAAGTGTATAAGG+AGG | + | tig0023174:42006-42025 | None:intergenic | 35.0% | |
| GGTAAATGAAGATGAGAAAG+CGG | + | tig0023174:42047-42066 | None:intergenic | 35.0% | |
| ACCTAAAAAATGAGCAGTTC+TGG | - | tig0023174:42064-42083 | Msa1405930:exon | 35.0% | |
| !!! | TCCAGAACTGCTCATTTTTT+AGG | + | tig0023174:42068-42087 | None:intergenic | 35.0% |
| ACATTGTACATCAGTTCCTA+AGG | - | tig0023174:42181-42200 | Msa1405930:intron | 35.0% | |
| CATTGTACATCAGTTCCTAA+GGG | - | tig0023174:42182-42201 | Msa1405930:intron | 35.0% | |
| TGCAATACTAACATCATTGG+TGG | - | tig0023174:42212-42231 | Msa1405930:intron | 35.0% | |
| GCGACTATCATGTAAATACT+CGG | + | tig0023174:42300-42319 | None:intergenic | 35.0% | |
| TCTTAAGGCCAATAAGAACA+AGG | - | tig0023174:42379-42398 | Msa1405930:CDS | 35.0% | |
| CTTAAGGCCAATAAGAACAA+GGG | - | tig0023174:42380-42399 | Msa1405930:CDS | 35.0% | |
| GTGTACAGTTTCTTTCTTGT+GGG | + | tig0023174:42473-42492 | None:intergenic | 35.0% | |
| !! | GTCATTTTGTACTATGATGC+AGG | - | tig0023174:42627-42646 | Msa1405930:intron | 35.0% |
| CCTAACATTTAAAGATGCGA+TGG | + | tig0023174:42721-42740 | None:intergenic | 35.0% | |
| CCATCGCATCTTTAAATGTT+AGG | - | tig0023174:42718-42737 | Msa1405930:intron | 35.0% | |
| TCGCATCTTTAAATGTTAGG+TGG | - | tig0023174:42721-42740 | Msa1405930:intron | 35.0% | |
| TTAGGTGGCATTTGTAGATT+TGG | - | tig0023174:42736-42755 | Msa1405930:intron | 35.0% | |
| TAGGTGGCATTTGTAGATTT+GGG | - | tig0023174:42737-42756 | Msa1405930:intron | 35.0% | |
| TTGACACAATGCGCATAATA+AGG | + | tig0023174:42785-42804 | None:intergenic | 35.0% | |
| TGCGCATTGTGTCAAAAATA+TGG | - | tig0023174:42790-42809 | Msa1405930:intron | 35.0% | |
| GCGCATTGTGTCAAAAATAT+GGG | - | tig0023174:42791-42810 | Msa1405930:intron | 35.0% | |
| AGGAATCCATTCATTCAATG+TGG | - | tig0023174:42871-42890 | Msa1405930:intron | 35.0% | |
| GGAATCCATTCATTCAATGT+GGG | - | tig0023174:42872-42891 | Msa1405930:intron | 35.0% | |
| CATATCCATATGCATGAAGA+TGG | + | tig0023174:43180-43199 | None:intergenic | 35.0% | |
| ! | AAAGCACAATTTAGAATGCC+AGG | + | tig0023174:43424-43443 | None:intergenic | 35.0% |
| CTTTGCTTTCTATTTGTTCC+AGG | - | tig0023174:43440-43459 | Msa1405930:CDS | 35.0% | |
| AAGCATCAAAGGCAATATTG+AGG | + | tig0023174:43472-43491 | None:intergenic | 35.0% | |
| !! | ACTTTCTCAGAAAGCATCAA+AGG | + | tig0023174:43483-43502 | None:intergenic | 35.0% |
| CCTGTGGTAGTATTTAAACA+TGG | + | tig0023174:43585-43604 | None:intergenic | 35.0% | |
| CCATGTTTAAATACTACCAC+AGG | - | tig0023174:43582-43601 | Msa1405930:intron | 35.0% | |
| !! | GTTTTGAATGGAACGACAAA+TGG | - | tig0023174:43688-43707 | Msa1405930:intron | 35.0% |
| ATAGATCTGAGTGGTGATAT+GGG | - | tig0023174:43848-43867 | Msa1405930:CDS | 35.0% | |
| GAGGTAATCGCTAAAAATCA+AGG | + | tig0023174:44168-44187 | None:intergenic | 35.0% | |
| AAACATCTATAGTTCCTAGC+CGG | - | tig0023174:44336-44355 | Msa1405930:CDS | 35.0% | |
| ! | TTTTGCGTTGTATGTCATCT+TGG | - | tig0023174:44362-44381 | Msa1405930:CDS | 35.0% |
| AGGCCAAATAGAAACTTTCA+AGG | + | tig0023174:44413-44432 | None:intergenic | 35.0% | |
| ! | CACCGTATTTTACAAAATCC+TGG | + | tig0023174:44685-44704 | None:intergenic | 35.0% |
| TCAGCTTCATAAACATCAGA+CGG | + | tig0023174:44779-44798 | None:intergenic | 35.0% | |
| AATCCTCAGTTAATTGTTGG+TGG | + | tig0023174:44827-44846 | None:intergenic | 35.0% | |
| TTTCATGTGAAAAGGGACAT+TGG | - | tig0023174:44935-44954 | Msa1405930:CDS | 35.0% | |
| ! | TTTTTCCTTTGATTCTGACG+AGG | - | tig0023174:44962-44981 | Msa1405930:CDS | 35.0% |
| !! | GTAAGTTTCCTAGTTGCTTT+TGG | - | tig0023174:45086-45105 | Msa1405930:intron | 35.0% |
| GTTGCTGAAAATTTCGAAAC+AGG | - | tig0023174:45159-45178 | Msa1405930:intron | 35.0% | |
| CAATTTACCAATGACAGAGA+TGG | - | tig0023174:45363-45382 | Msa1405930:intron | 35.0% | |
| CAATGACAGAGATGGTAAAT+CGG | - | tig0023174:45371-45390 | Msa1405930:intron | 35.0% | |
| ! | TTTTTAAATTCTCCTGCTCG+GGG | + | tig0023174:45434-45453 | None:intergenic | 35.0% |
| GCAAATGATCGAACAGGTAA+TGG | + | tig0023174:41970-41989 | None:intergenic | 40.0% | |
| AGTGAAGCAAATGATCGAAC+AGG | + | tig0023174:41976-41995 | None:intergenic | 40.0% | |
| TGATAAGAACGCAACCAATC+TGG | + | tig0023174:42100-42119 | None:intergenic | 40.0% | |
| ! | AGATTGGTTGCGTTCTTATC+AGG | - | tig0023174:42099-42118 | Msa1405930:CDS | 40.0% |
| GTATTGCACAACTAACCCTT+AGG | + | tig0023174:42200-42219 | None:intergenic | 40.0% | |
| ! | TAGTCGCAGTTTTTCTGATG+AGG | - | tig0023174:42313-42332 | Msa1405930:CDS | 40.0% |
| !! | CGTCTTTTTCGTTGAAGACT+TGG | + | tig0023174:42411-42430 | None:intergenic | 40.0% |
| GTCTTCAACGAAAAAGACGT+TGG | - | tig0023174:42412-42431 | Msa1405930:intron | 40.0% | |
| TCAACGAAAAAGACGTTGGA+AGG | - | tig0023174:42416-42435 | Msa1405930:intron | 40.0% | |
| TACAGTTTCTTTCTTGTGGG+TGG | + | tig0023174:42470-42489 | None:intergenic | 40.0% | |
| CGTGTACAGTTTCTTTCTTG+TGG | + | tig0023174:42474-42493 | None:intergenic | 40.0% | |
| CAAGAAAGAAACTGTACACG+CGG | - | tig0023174:42474-42493 | Msa1405930:intron | 40.0% | |
| TACACGCGGAAGGATAAAAA+TGG | - | tig0023174:42488-42507 | Msa1405930:intron | 40.0% | |
| GTACTATGATGCAGGAAAGA+AGG | - | tig0023174:42635-42654 | Msa1405930:intron | 40.0% | |
| TTTATGCTCTGCTTCCTTGT+CGG | + | tig0023174:42691-42710 | None:intergenic | 40.0% | |
| AGGTGGCATTTGTAGATTTG+GGG | - | tig0023174:42738-42757 | Msa1405930:intron | 40.0% | |
| GAAACTAAACCTCAACCTTC+TGG | - | tig0023174:42963-42982 | Msa1405930:intron | 40.0% | |
| CGGAAAATCTCCATCCAAAA+AGG | - | tig0023174:43010-43029 | Msa1405930:CDS | 40.0% | |
| !!! | GCTTTTGAAGCCTTTTTGGA+TGG | + | tig0023174:43023-43042 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTGAAGCCTTTT+TGG | + | tig0023174:43027-43046 | None:intergenic | 40.0% |
| CAAAAAGGCTTCAAAAGCGA+AGG | - | tig0023174:43025-43044 | Msa1405930:intron | 40.0% | |
| AAGACTGCACACCAGTAAAA+GGG | - | tig0023174:43072-43091 | Msa1405930:intron | 40.0% | |
| AAGGTTAATGCAAAGGGGAA+AGG | - | tig0023174:43104-43123 | Msa1405930:intron | 40.0% | |
| TTGCTCCATCTTCATGCATA+TGG | - | tig0023174:43172-43191 | Msa1405930:intron | 40.0% | |
| CATCAAAGGCAATATTGAGG+AGG | + | tig0023174:43469-43488 | None:intergenic | 40.0% | |
| TGAGAAAGTTCATCGCACAA+AGG | - | tig0023174:43494-43513 | Msa1405930:CDS | 40.0% | |
| GATTCCCTTTGCTACATGTT+TGG | - | tig0023174:43542-43561 | Msa1405930:intron | 40.0% | |
| AGTGAAATGCGTTACTCATC+TGG | + | tig0023174:43613-43632 | None:intergenic | 40.0% | |
| TGGAAGAAAAGTTGCTAGTC+TGG | - | tig0023174:43654-43673 | Msa1405930:intron | 40.0% | |
| !!! | ACAGAGCAGCTTTTTAGGAT+TGG | + | tig0023174:43794-43813 | None:intergenic | 40.0% |
| ! | GCAAAACAGAGCAGCTTTTT+AGG | + | tig0023174:43799-43818 | None:intergenic | 40.0% |
| ! | AAAAAGCTGCTCTGTTTTGC+AGG | - | tig0023174:43799-43818 | Msa1405930:intron | 40.0% |
| CATATCACCACTCAGATCTA+TGG | + | tig0023174:43849-43868 | None:intergenic | 40.0% | |
| CATAGATCTGAGTGGTGATA+TGG | - | tig0023174:43847-43866 | Msa1405930:CDS | 40.0% | |
| GTATACGCAGTGTTATCATC+AGG | + | tig0023174:44015-44034 | None:intergenic | 40.0% | |
| CGGCCTTGAAAGTTTCTATT+TGG | - | tig0023174:44407-44426 | Msa1405930:CDS | 40.0% | |
| CATGGAAGTAACTAGCTACA+AGG | + | tig0023174:44433-44452 | None:intergenic | 40.0% | |
| CTGTATGAAGTCGTTCATGA+TGG | + | tig0023174:44747-44766 | None:intergenic | 40.0% | |
| GAAGCTGAAACTATGGTTGA+AGG | - | tig0023174:44791-44810 | Msa1405930:intron | 40.0% | |
| CATCCACCAACAATTAACTG+AGG | - | tig0023174:44821-44840 | Msa1405930:intron | 40.0% | |
| ATGTGAAAAGGGACATTGGA+TGG | - | tig0023174:44939-44958 | Msa1405930:CDS | 40.0% | |
| ATCTTCCTCGTCAGAATCAA+AGG | + | tig0023174:44970-44989 | None:intergenic | 40.0% | |
| TTTGATTCTGACGAGGAAGA+TGG | - | tig0023174:44969-44988 | Msa1405930:CDS | 40.0% | |
| AGACACCTGGTAAATCCAAA+AGG | - | tig0023174:45045-45064 | Msa1405930:CDS | 40.0% | |
| ACCTGGTAAATCCAAAAGGA+AGG | - | tig0023174:45049-45068 | Msa1405930:CDS | 40.0% | |
| TGGTAAATCCAAAAGGAAGG+CGG | - | tig0023174:45052-45071 | Msa1405930:CDS | 40.0% | |
| ! | GCTTTCTTCTTTGCTGTCTT+TGG | + | tig0023174:45229-45248 | None:intergenic | 40.0% |
| CGATTTACCATCTCTGTCAT+TGG | + | tig0023174:45373-45392 | None:intergenic | 40.0% | |
| CACAATGAGTGTATCGAAAC+AGG | + | tig0023174:45512-45531 | None:intergenic | 40.0% | |
| ! | TTTATGACGGAGGGAAAAGG+CGG | + | tig0023174:41805-41824 | None:intergenic | 45.0% |
| ! | ACCTTTATGACGGAGGGAAA+AGG | + | tig0023174:41808-41827 | None:intergenic | 45.0% |
| GAATCAGATGACAGTGTCAC+CGG | + | tig0023174:42278-42297 | None:intergenic | 45.0% | |
| GGCACTACCCTTGTTCTTAT+TGG | + | tig0023174:42390-42409 | None:intergenic | 45.0% | |
| AAAGAAACTGTACACGCGGA+AGG | - | tig0023174:42478-42497 | Msa1405930:intron | 45.0% | |
| CTATGATGCAGGAAAGAAGG+AGG | - | tig0023174:42638-42657 | Msa1405930:intron | 45.0% | |
| CAGCTCCCACATTGAATGAA+TGG | + | tig0023174:42880-42899 | None:intergenic | 45.0% | |
| GCTATGATCACGACATGACT+CGG | + | tig0023174:42913-42932 | None:intergenic | 45.0% | |
| GAAGACTGCACACCAGTAAA+AGG | - | tig0023174:43071-43090 | Msa1405930:intron | 45.0% | |
| ! | CAAAGGGGAAAGGTACGAAA+TGG | - | tig0023174:43114-43133 | Msa1405930:intron | 45.0% |
| CATGTTTCTCGAAATGGGAC+AGG | - | tig0023174:43226-43245 | Msa1405930:intron | 45.0% | |
| ! | TTTAGAATGCCAGGCTGGAT+AGG | + | tig0023174:43415-43434 | None:intergenic | 45.0% |
| ! | CACAATTTAGAATGCCAGGC+TGG | + | tig0023174:43420-43439 | None:intergenic | 45.0% |
| GCAATATTGAGGAGGAAACC+TGG | + | tig0023174:43461-43480 | None:intergenic | 45.0% | |
| AAGTTCATCGCACAAAGGTC+AGG | - | tig0023174:43499-43518 | Msa1405930:CDS | 45.0% | |
| ATTATCTCAGATTCCCCGTC+CGG | - | tig0023174:43887-43906 | Msa1405930:intron | 45.0% | |
| TAAGCACATTTCCTGATCCC+CGG | + | tig0023174:43909-43928 | None:intergenic | 45.0% | |
| GACATACAACGCAAAACGTC+CGG | + | tig0023174:44358-44377 | None:intergenic | 45.0% | |
| GCTTCATAAACATCAGACGG+TGG | + | tig0023174:44776-44795 | None:intergenic | 45.0% | |
| !! | CTCGTTTTGATCAGTTGGGT+GGG | + | tig0023174:45012-45031 | None:intergenic | 45.0% |
| !! | CGTGCTCGTTTTGATCAGTT+GGG | + | tig0023174:45016-45035 | None:intergenic | 45.0% |
| ! | GCCTTCCTTTTGGATTTACC+AGG | + | tig0023174:45053-45072 | None:intergenic | 45.0% |
| ! | TGTTTTGTCCGCCTTCCTTT+TGG | + | tig0023174:45063-45082 | None:intergenic | 45.0% |
| AAGGAAGGCGGACAAAACAT+CGG | - | tig0023174:45064-45083 | Msa1405930:CDS | 45.0% | |
| !! | CAGGGTGCTGAAAAGAAAAG+AGG | - | tig0023174:45178-45197 | Msa1405930:intron | 45.0% |
| AGAAAGCTCCAAGTTCCAAG+AGG | - | tig0023174:45242-45261 | Msa1405930:CDS | 45.0% | |
| GAAAGCTCCAAGTTCCAAGA+GGG | - | tig0023174:45243-45262 | Msa1405930:CDS | 45.0% | |
| TTTCTTAGGCTTTGCCCTCT+TGG | + | tig0023174:45260-45279 | None:intergenic | 45.0% | |
| ! | TCGAAACAGGCCTGATAATG+AGG | + | tig0023174:45499-45518 | None:intergenic | 45.0% |
| ! | TTATGACGGAGGGAAAAGGC+GGG | + | tig0023174:41804-41823 | None:intergenic | 50.0% |
| ! | GCCTTTTCCCTCCGTCATAA+AGG | - | tig0023174:41804-41823 | Msa1405930:three_prime_UTR | 50.0% |
| CTGGAGATAGTTCGCCAGAT+TGG | - | tig0023174:42083-42102 | Msa1405930:CDS | 50.0% | |
| CCATCTTCACCAGAAGGTTG+AGG | + | tig0023174:42975-42994 | None:intergenic | 50.0% | |
| CCTCAACCTTCTGGTGAAGA+TGG | - | tig0023174:42972-42991 | Msa1405930:intron | 50.0% | |
| CGAAGTCCATCTTCACCAGA+AGG | + | tig0023174:42981-43000 | None:intergenic | 50.0% | |
| ! | TCTGGTGAAGATGGACTTCG+TGG | - | tig0023174:42981-43000 | Msa1405930:intron | 50.0% |
| ! | GATGGACTTCGTGGCAATGA+CGG | - | tig0023174:42990-43009 | Msa1405930:intron | 50.0% |
| GTTTCTCGAAATGGGACAGG+TGG | - | tig0023174:43229-43248 | Msa1405930:intron | 50.0% | |
| GGCTGGATAGGCAGTCAATA+TGG | + | tig0023174:43403-43422 | None:intergenic | 50.0% | |
| ! | TATTGACTGCCTATCCAGCC+TGG | - | tig0023174:43403-43422 | Msa1405930:intron | 50.0% |
| TTCATCGCACAAAGGTCAGG+TGG | - | tig0023174:43502-43521 | Msa1405930:CDS | 50.0% | |
| TACTCATCTGGTTGTCCCTG+TGG | + | tig0023174:43601-43620 | None:intergenic | 50.0% | |
| CAGGCTCTTGTTGAGTGTCA+AGG | - | tig0023174:43818-43837 | Msa1405930:intron | 50.0% | |
| GGTGACTCCATAGATCTGAG+TGG | - | tig0023174:43839-43858 | Msa1405930:intron | 50.0% | |
| AGTGGTGATATGGGAGCTGT+AGG | - | tig0023174:43857-43876 | Msa1405930:CDS | 50.0% | |
| GTGGTGATATGGGAGCTGTA+GGG | - | tig0023174:43858-43877 | Msa1405930:CDS | 50.0% | |
| TGATATGGGAGCTGTAGGGA+GGG | - | tig0023174:43862-43881 | Msa1405930:CDS | 50.0% | |
| TTATCTCAGATTCCCCGTCC+GGG | - | tig0023174:43888-43907 | Msa1405930:intron | 50.0% | |
| ! | GTGATTAGTCAGCCTTGACC+AGG | - | tig0023174:44664-44683 | Msa1405930:CDS | 50.0% |
| CTGACGAGGAAGATGGTAAG+AGG | - | tig0023174:44976-44995 | Msa1405930:CDS | 50.0% | |
| !! | GTTTTGATCAGTTGGGTGGG+CGG | + | tig0023174:45009-45028 | None:intergenic | 50.0% |
| !! | GCTCGTTTTGATCAGTTGGG+TGG | + | tig0023174:45013-45032 | None:intergenic | 50.0% |
| !! | GCGTGCTCGTTTTGATCAGT+TGG | + | tig0023174:45017-45036 | None:intergenic | 50.0% |
| TGATCAAAACGAGCACGCTG+AGG | - | tig0023174:45019-45038 | Msa1405930:CDS | 50.0% | |
| ATTCTTACCAAACCCCGAGC+AGG | - | tig0023174:45419-45438 | Msa1405930:intron | 50.0% | |
| AAATTCTCCTGCTCGGGGTT+TGG | + | tig0023174:45429-45448 | None:intergenic | 50.0% | |
| GTCACCGGCGAATTAGGAGT+GGG | + | tig0023174:42263-42282 | None:intergenic | 55.0% | |
| TGTCACCGGCGAATTAGGAG+TGG | + | tig0023174:42264-42283 | None:intergenic | 55.0% | |
| GACAGTGTCACCGGCGAATT+AGG | + | tig0023174:42269-42288 | None:intergenic | 55.0% | |
| GCTCGATTCAGACACCGACA+AGG | - | tig0023174:42674-42693 | Msa1405930:intron | 55.0% | |
| CGAAATGGGACAGGTGGTGA+TGG | - | tig0023174:43235-43254 | Msa1405930:intron | 55.0% | |
| GTGATATGGGAGCTGTAGGG+AGG | - | tig0023174:43861-43880 | Msa1405930:CDS | 55.0% | |
| TATCTCAGATTCCCCGTCCG+GGG | - | tig0023174:43889-43908 | Msa1405930:intron | 55.0% | |
| ACATTTCCTGATCCCCGGAC+GGG | + | tig0023174:43904-43923 | None:intergenic | 55.0% | |
| CACATTTCCTGATCCCCGGA+CGG | + | tig0023174:43905-43924 | None:intergenic | 55.0% | |
| ACAACGCAAAACGTCCGGCT+AGG | + | tig0023174:44353-44372 | None:intergenic | 55.0% | |
| !! | GGTTAGCTTTGGGCAGACAG+AGG | - | tig0023174:44515-44534 | Msa1405930:intron | 55.0% |
| CTTTGGGCAGACAGAGGCAA+AGG | - | tig0023174:44521-44540 | Msa1405930:intron | 55.0% | |
| GGCTTTGCCCTCTTGGAACT+TGG | + | tig0023174:45253-45272 | None:intergenic | 55.0% | |
| GGTGCCCACTCCTAATTCGC+CGG | - | tig0023174:42256-42275 | Msa1405930:intron | 60.0% | |
| CATTTCCTGATCCCCGGACG+GGG | + | tig0023174:43903-43922 | None:intergenic | 60.0% | |
| CACGCTGAGGAACAGACACC+TGG | - | tig0023174:45032-45051 | Msa1405930:CDS | 60.0% | |
| AGATTCCCCGTCCGGGGATC+AGG | - | tig0023174:43895-43914 | Msa1405930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023174 | gene | 41790 | 45571 | 41790 | ID=Msa1405930;Name=Msa1405930 |
| tig0023174 | mRNA | 41790 | 45571 | 41790 | ID=Msa1405930-mRNA-1;Parent=Msa1405930;Name=Msa1405930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=74|1|1|1|0.91|0.84|13|289|412 |
| tig0023174 | exon | 41790 | 42180 | 41790 | ID=Msa1405930-mRNA-1:exon:24336;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 42276 | 42412 | 42276 | ID=Msa1405930-mRNA-1:exon:24335;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 42549 | 42624 | 42549 | ID=Msa1405930-mRNA-1:exon:24334;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 42819 | 42845 | 42819 | ID=Msa1405930-mRNA-1:exon:24333;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 42991 | 43037 | 42991 | ID=Msa1405930-mRNA-1:exon:24332;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 43423 | 43540 | 43423 | ID=Msa1405930-mRNA-1:exon:24331;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 43846 | 43899 | 43846 | ID=Msa1405930-mRNA-1:exon:24330;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 44052 | 44113 | 44052 | ID=Msa1405930-mRNA-1:exon:24329;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 44236 | 44488 | 44236 | ID=Msa1405930-mRNA-1:exon:24328;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 44651 | 44712 | 44651 | ID=Msa1405930-mRNA-1:exon:24327;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 44852 | 45104 | 44852 | ID=Msa1405930-mRNA-1:exon:24326;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 45241 | 45326 | 45241 | ID=Msa1405930-mRNA-1:exon:24325;Parent=Msa1405930-mRNA-1 |
| tig0023174 | exon | 45536 | 45571 | 45536 | ID=Msa1405930-mRNA-1:exon:24324;Parent=Msa1405930-mRNA-1 |
| tig0023174 | five_prime_UTR | 45536 | 45571 | 45536 | ID=Msa1405930-mRNA-1:five_prime_utr;Parent=Msa1405930-mRNA-1 |
| tig0023174 | five_prime_UTR | 45289 | 45326 | 45289 | ID=Msa1405930-mRNA-1:five_prime_utr;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 45241 | 45288 | 45241 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 44852 | 45104 | 44852 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 44651 | 44712 | 44651 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 44236 | 44488 | 44236 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 44052 | 44113 | 44052 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 43846 | 43899 | 43846 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 43423 | 43540 | 43423 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 42991 | 43037 | 42991 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 42819 | 42845 | 42819 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 42549 | 42624 | 42549 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 42276 | 42412 | 42276 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | CDS | 42079 | 42180 | 42079 | ID=Msa1405930-mRNA-1:cds;Parent=Msa1405930-mRNA-1 |
| tig0023174 | three_prime_UTR | 41790 | 42078 | 41790 | ID=Msa1405930-mRNA-1:three_prime_utr;Parent=Msa1405930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
