AlfalfaGEDB | Msa0517590

M. sativa cultivar zhongmu-4 / Msa0517590

KEGG: K03145
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141
PFAM: PF08711.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517590	XP_013461492.1	99.458	369	2	0	1	369	1	369	0.0	755

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517590	sp\|Q9ZVH8\|RDO2_ARATH	53.886	386	147	9	6	369	2	378	7.57e-118	349

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517590	A0A072V117	99.458	369	2	0	1	369	1	369	0.0	755

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TFs/TRs:

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Gene ID	Type	Classification
Msa0517590	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0517590	0.831206	1.903295e-55	-8.615850e-47
Msa0001450	Msa0517590	0.807258	5.519513e-50	-8.615850e-47
Msa0017730	Msa0517590	0.830604	2.674075e-55	-8.615850e-47
Msa0024400	Msa0517590	0.823789	1.146153e-53	-8.615850e-47
Msa0029630	Msa0517590	0.851086	1.116100e-60	-8.615850e-47
Msa0059840	Msa0517590	0.804217	2.402129e-49	-8.615850e-47
Msa0072420	Msa0517590	0.882498	9.908422e-71	-8.615850e-47
Msa0079920	Msa0517590	0.826899	2.105444e-54	-8.615850e-47
Msa0081270	Msa0517590	0.804749	1.860806e-49	-8.615850e-47
Msa0091730	Msa0517590	0.821607	3.690972e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517590	MtrunA17_Chr3g0128651	99.458	369	2	0	1	369	1	369	0.0	755

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0517590	AT2G38560.1	53.886	386	147	9	6	369	2	378	7.69e-119	349
Msa0517590	AT2G42725.1	48.031	127	65	1	189	314	104	230	7.26e-32	120
Msa0517590	AT4G18720.1	51.724	116	55	1	184	298	100	215	1.13e-29	115
Msa0517590	AT5G42325.1	40.625	128	58	3	189	314	104	215	2.79e-19	86.3

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Find 120 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCCGAATGTTCTCCC+TGG	0.523075	3_4:-69296556	None:intergenic
AAACAAAAGAAAAGGAGAGA+AGG	0.536453	3_4:-69294582	None:intergenic
AAACTCTCACCAAGCATCCC+AGG	0.468100	3_4:+69296538	Msa0517590:CDS
AAAGCCCGAATGTTCTCCCT+GGG	0.578463	3_4:-69296555	None:intergenic
AAATGTAAAGGCACAAAATG+TGG	0.596450	3_4:+69296791	Msa0517590:CDS
AACTCTCACCAAGCATCCCA+GGG	0.605206	3_4:+69296539	Msa0517590:CDS
AATGGGGAGAGAGCTAAAGC+TGG	0.591506	3_4:+69296672	Msa0517590:CDS
AATGTTCTCCCTGGGATGCT+TGG	0.486291	3_4:-69296547	None:intergenic
AATTGATCAGTAGTAGCTTT+TGG	0.339749	3_4:-69297314	None:intergenic
ACTACTGATCAATTTAAGTG+TGG	0.648979	3_4:+69297323	Msa0517590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAAAGAAAAGGAGAGA+AGG	-	chr3_4:69294585-69294604	None:intergenic	30.0%
GAGAAACGAAACAAAAGAAA+AGG	-	chr3_4:69294593-69294612	None:intergenic	30.0%
TTAACATCAACAGAAACTCA+GGG	-	chr3_4:69295252-69295271	None:intergenic	30.0%
TTTAACATCAACAGAAACTC+AGG	-	chr3_4:69295253-69295272	None:intergenic	30.0%
AATTAAATTAGCACATTGCG+TGG	+	chr3_4:69295271-69295290	Msa0517590:intron	30.0%
ATTTAAATTAGCCAGTTGCA+TGG	+	chr3_4:69295376-69295395	Msa0517590:intron	30.0%
TATTGTATCGTAATTGAGTC+CGG	+	chr3_4:69295412-69295431	Msa0517590:intron	30.0%
GAAAATCCAAAACATATACC+CGG	-	chr3_4:69295434-69295453	None:intergenic	30.0%
TATCATTGTTGTCGTTATCT+TGG	+	chr3_4:69295642-69295661	Msa0517590:intron	30.0%
TATCTTGGAATTTATGACCA+AGG	+	chr3_4:69295657-69295676	Msa0517590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	69294555	69297957	69294555	ID=Msa0517590;Name=Msa0517590
chr3_4	mRNA	69294555	69297957	69294555	ID=Msa0517590-mRNA-1;Parent=Msa0517590;Name=Msa0517590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123\|1\|1\|1\|0.5\|0.66\|3\|497\|369
chr3_4	exon	69294555	69294661	69294555	ID=Msa0517590-mRNA-1:exon:18424;Parent=Msa0517590-mRNA-1
chr3_4	exon	69294762	69294948	69294762	ID=Msa0517590-mRNA-1:exon:18425;Parent=Msa0517590-mRNA-1
chr3_4	exon	69296522	69297957	69296522	ID=Msa0517590-mRNA-1:exon:18426;Parent=Msa0517590-mRNA-1
chr3_4	five_prime_UTR	69294555	69294661	69294555	ID=Msa0517590-mRNA-1:five_prime_utr;Parent=Msa0517590-mRNA-1
chr3_4	five_prime_UTR	69294762	69294777	69294762	ID=Msa0517590-mRNA-1:five_prime_utr;Parent=Msa0517590-mRNA-1
chr3_4	CDS	69294778	69294948	69294778	ID=Msa0517590-mRNA-1:cds;Parent=Msa0517590-mRNA-1
chr3_4	CDS	69296522	69297460	69296522	ID=Msa0517590-mRNA-1:cds;Parent=Msa0517590-mRNA-1
chr3_4	three_prime_UTR	69297461	69297957	69297461	ID=Msa0517590-mRNA-1:three_prime_utr;Parent=Msa0517590-mRNA-1

Gene Sequence

>Msa0517590

ATGGAGAAGGAGAAAGAGAAAGAGTTGGTCGAATTGTACGAAGCCGCGAAGAAAGCGGCGGATGCTTCCACCTCCACCGATGATAGTCCCAGCGAAGAAACCCGTTGCCTCGATGCGCTTGAACAGCTCAAGAATTTTCCGGTCAATTACAAAATTCTCGTCAATACCCAGGTGGGAAAACATCTTAAAACTCTCACCAAGCATCCCAGGGAGAACATTCGGGCTTTTGCTGTTGACTTAATTGCGATATGGAAAGACGTAATTATCAAGGAAACAAGTAAAAATAAGAACGGGGCCTCTGATTCTAAGGTTGAGTCAACGAATGGGGAGAGAGCTAAAGCTGGGAAATTGCAGAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGCCAAGGTGGAGAAAGTTAATGGGAATGGTTCATCAAAGCTGAGCTCTGGAAATGTAAAGGCACAAAATGTGGATGTCAAAATTGAGAAAACTAATCGTACCTCGAACATCAAAGCGAAGGAGGAAAAACCAGTATCTGCGGCAAAGAAAATTTCATCCAGCGCTGCTGCTCCACCAAAGCTGAAGACTATGATCAAATCTAACGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCGAGATGCTTTAGCTAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTGAATGCATGTGACCCTATTCGTGTGGCAGTGACAGTGGAGTCCGTATTATTTGAAAACTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATCAGAAGAACCCTGATTTCCGGAGAAAAGTTTTGCTTGGTACTGTTGAGCCACAGCGGCTGGCCGTCATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAAGAGAATGAGAAAATCGAGCAGAAAGCTTTGTTCGACTGTGAGCGTGGACTTCAACCAAAAGCTACTACTGATCAATTTAAGTGTGGTCGGTGTGGACAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG

Protein sequence

>Msa0517590

MEKEKEKELVELYEAAKKAADASTSTDDSPSEETRCLDALEQLKNFPVNYKILVNTQVGKHLKTLTKHPRENIRAFAVDLIAIWKDVIIKETSKNKNGASDSKVESTNGERAKAGKLQKSPSVKVEKGESAKVEKVNGNGSSKLSSGNVKAQNVDVKIEKTNRTSNIKAKEEKPVSAAKKISSSAAAPPKLKTMIKSNDSARDKIRELLRDALAKVFEEADEDMMDEVNACDPIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGTVEPQRLAVMSSAEMASEQRKQENEKIEQKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC*