Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517590 | XP_013461492.1 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517590 | sp|Q9ZVH8|RDO2_ARATH | 53.886 | 386 | 147 | 9 | 6 | 369 | 2 | 378 | 7.57e-118 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517590 | A0A072V117 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 755 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0517590 | TR | IWS1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0517590 | 0.831206 | 1.903295e-55 | -8.615850e-47 |
| Msa0001450 | Msa0517590 | 0.807258 | 5.519513e-50 | -8.615850e-47 |
| Msa0017730 | Msa0517590 | 0.830604 | 2.674075e-55 | -8.615850e-47 |
| Msa0024400 | Msa0517590 | 0.823789 | 1.146153e-53 | -8.615850e-47 |
| Msa0029630 | Msa0517590 | 0.851086 | 1.116100e-60 | -8.615850e-47 |
| Msa0059840 | Msa0517590 | 0.804217 | 2.402129e-49 | -8.615850e-47 |
| Msa0072420 | Msa0517590 | 0.882498 | 9.908422e-71 | -8.615850e-47 |
| Msa0079920 | Msa0517590 | 0.826899 | 2.105444e-54 | -8.615850e-47 |
| Msa0081270 | Msa0517590 | 0.804749 | 1.860806e-49 | -8.615850e-47 |
| Msa0091730 | Msa0517590 | 0.821607 | 3.690972e-53 | -8.615850e-47 |
| Msa0104670 | Msa0517590 | 0.803314 | 3.699143e-49 | -8.615850e-47 |
| Msa0119900 | Msa0517590 | 0.818249 | 2.163136e-52 | -8.615850e-47 |
| Msa0120880 | Msa0517590 | 0.864197 | 1.445424e-64 | -8.615850e-47 |
| Msa0122530 | Msa0517590 | 0.828021 | 1.133036e-54 | -8.615850e-47 |
| Msa0125450 | Msa0517590 | 0.846390 | 2.237959e-59 | -8.615850e-47 |
| Msa0125540 | Msa0517590 | 0.835276 | 1.844219e-56 | -8.615850e-47 |
| Msa0131590 | Msa0517590 | 0.813355 | 2.669658e-51 | -8.615850e-47 |
| Msa0147980 | Msa0517590 | 0.810803 | 9.611335e-51 | -8.615850e-47 |
| Msa0149440 | Msa0517590 | 0.805759 | 1.143096e-49 | -8.615850e-47 |
| Msa0163510 | Msa0517590 | 0.824672 | 7.108894e-54 | -8.615850e-47 |
| Msa0169610 | Msa0517590 | 0.826733 | 2.307368e-54 | -8.615850e-47 |
| Msa0173800 | Msa0517590 | 0.824201 | 9.175315e-54 | -8.615850e-47 |
| Msa0177960 | Msa0517590 | 0.840602 | 7.877715e-58 | -8.615850e-47 |
| Msa0190590 | Msa0517590 | 0.806226 | 9.116010e-50 | -8.615850e-47 |
| Msa0190870 | Msa0517590 | 0.856986 | 2.219288e-62 | -8.615850e-47 |
| Msa0202490 | Msa0517590 | 0.850164 | 2.027186e-60 | -8.615850e-47 |
| Msa0204960 | Msa0517590 | 0.865460 | 5.812702e-65 | -8.615850e-47 |
| Msa0206690 | Msa0517590 | 0.815190 | 1.049643e-51 | -8.615850e-47 |
| Msa0209350 | Msa0517590 | 0.805336 | 1.402358e-49 | -8.615850e-47 |
| Msa0214550 | Msa0517590 | 0.801419 | 9.084341e-49 | -8.615850e-47 |
| Msa0215990 | Msa0517590 | 0.837321 | 5.569195e-57 | -8.615850e-47 |
| Msa0217670 | Msa0517590 | 0.860623 | 1.814868e-63 | -8.615850e-47 |
| Msa0230820 | Msa0517590 | 0.824036 | 1.003134e-53 | -8.615850e-47 |
| Msa0237300 | Msa0517590 | 0.828583 | 8.294261e-55 | -8.615850e-47 |
| Msa0377820 | Msa0517590 | 0.916800 | 1.150855e-85 | -8.615850e-47 |
| Msa0385500 | Msa0517590 | 0.863864 | 1.835772e-64 | -8.615850e-47 |
| Msa0404630 | Msa0517590 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0423750 | Msa0517590 | 0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa0426580 | Msa0517590 | 0.992297 | 1.879993e-192 | -8.615850e-47 |
| Msa0437020 | Msa0517590 | 0.806544 | 7.814428e-50 | -8.615850e-47 |
| Msa0439960 | Msa0517590 | 0.829933 | 3.900744e-55 | -8.615850e-47 |
| Msa0450400 | Msa0517590 | -0.808880 | 2.491942e-50 | -8.615850e-47 |
| Msa0462600 | Msa0517590 | 0.828396 | 9.199942e-55 | -8.615850e-47 |
| Msa0472930 | Msa0517590 | 0.924385 | 7.564218e-90 | -8.615850e-47 |
| Msa0245580 | Msa0517590 | 0.819428 | 1.167584e-52 | -8.615850e-47 |
| Msa0249580 | Msa0517590 | 0.836363 | 9.775477e-57 | -8.615850e-47 |
| Msa0249860 | Msa0517590 | 0.823544 | 1.308403e-53 | -8.615850e-47 |
| Msa0256140 | Msa0517590 | 0.825497 | 4.538578e-54 | -8.615850e-47 |
| Msa0257490 | Msa0517590 | 0.851145 | 1.073992e-60 | -8.615850e-47 |
| Msa0272300 | Msa0517590 | 0.837219 | 5.914255e-57 | -8.615850e-47 |
| Msa0274720 | Msa0517590 | 0.830788 | 2.410637e-55 | -8.615850e-47 |
| Msa0281530 | Msa0517590 | 0.863770 | 1.964193e-64 | -8.615850e-47 |
| Msa0284180 | Msa0517590 | 0.853377 | 2.488625e-61 | -8.615850e-47 |
| Msa0288010 | Msa0517590 | -0.809385 | 1.942402e-50 | -8.615850e-47 |
| Msa0296250 | Msa0517590 | 0.810387 | 1.181953e-50 | -8.615850e-47 |
| Msa0296630 | Msa0517590 | -0.806448 | 8.186320e-50 | -8.615850e-47 |
| Msa0296790 | Msa0517590 | 0.846099 | 2.685959e-59 | -8.615850e-47 |
| Msa0315520 | Msa0517590 | 0.836465 | 9.213154e-57 | -8.615850e-47 |
| Msa0315980 | Msa0517590 | 0.812909 | 3.343939e-51 | -8.615850e-47 |
| Msa0320590 | Msa0517590 | 0.838001 | 3.726313e-57 | -8.615850e-47 |
| Msa0326480 | Msa0517590 | 0.816013 | 6.880567e-52 | -8.615850e-47 |
| Msa0336450 | Msa0517590 | 0.849786 | 2.585927e-60 | -8.615850e-47 |
| Msa0336540 | Msa0517590 | 0.864897 | 8.735945e-65 | -8.615850e-47 |
| Msa0343500 | Msa0517590 | 0.828488 | 8.741627e-55 | -8.615850e-47 |
| Msa0363060 | Msa0517590 | 0.803895 | 2.802156e-49 | -8.615850e-47 |
| Msa0363640 | Msa0517590 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa0511770 | Msa0517590 | 0.824478 | 7.898152e-54 | -8.615850e-47 |
| Msa0517590 | Msa0527020 | 0.818754 | 1.661857e-52 | -8.615850e-47 |
| Msa0517590 | Msa0527540 | 0.853879 | 1.784485e-61 | -8.615850e-47 |
| Msa0517590 | Msa0531250 | 0.800745 | 1.247707e-48 | -8.615850e-47 |
| Msa0517590 | Msa0542290 | 0.815329 | 9.773852e-52 | -8.615850e-47 |
| Msa0517590 | Msa0542560 | 0.802690 | 4.978172e-49 | -8.615850e-47 |
| Msa0517590 | Msa0547160 | 0.823134 | 1.630703e-53 | -8.615850e-47 |
| Msa0517590 | Msa0549450 | 0.881903 | 1.629342e-70 | -8.615850e-47 |
| Msa0517590 | Msa0549950 | 0.818075 | 2.368896e-52 | -8.615850e-47 |
| Msa0517590 | Msa0581110 | 0.805396 | 1.362040e-49 | -8.615850e-47 |
| Msa0517590 | Msa0604290 | 0.809124 | 2.209188e-50 | -8.615850e-47 |
| Msa0517590 | Msa0622790 | 0.841665 | 4.140646e-58 | -8.615850e-47 |
| Msa0517590 | Msa0628420 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0517590 | Msa0642970 | 0.802745 | 4.848785e-49 | -8.615850e-47 |
| Msa0517590 | Msa0646020 | 0.820141 | 8.024524e-53 | -8.615850e-47 |
| Msa0517590 | Msa0646420 | 0.825320 | 4.999490e-54 | -8.615850e-47 |
| Msa0517590 | Msa0651560 | 0.825066 | 5.738558e-54 | -8.615850e-47 |
| Msa0517590 | Msa0662220 | 0.831368 | 1.737165e-55 | -8.615850e-47 |
| Msa0517590 | Msa0665280 | 0.811359 | 7.284656e-51 | -8.615850e-47 |
| Msa0517590 | Msa0689440 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0517590 | Msa0690310 | 0.838337 | 3.052766e-57 | -8.615850e-47 |
| Msa0517590 | Msa0708000 | -0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0517590 | Msa0741440 | 0.808282 | 3.344162e-50 | -8.615850e-47 |
| Msa0517590 | Msa0752700 | 0.845446 | 4.041580e-59 | -8.615850e-47 |
| Msa0517590 | Msa0761310 | 0.832686 | 8.206559e-56 | -8.615850e-47 |
| Msa0517590 | Msa0786750 | 0.801034 | 1.089451e-48 | -8.615850e-47 |
| Msa0517590 | Msa0794970 | 0.855991 | 4.349375e-62 | -8.615850e-47 |
| Msa0517590 | Msa0803780 | 0.811053 | 8.484464e-51 | -8.615850e-47 |
| Msa0517590 | Msa0822500 | 0.800069 | 1.713423e-48 | -8.615850e-47 |
| Msa0517590 | Msa0828590 | 0.819273 | 1.266458e-52 | -8.615850e-47 |
| Msa0517590 | Msa0831100 | 0.846652 | 1.898254e-59 | -8.615850e-47 |
| Msa0517590 | Msa0872250 | 0.815731 | 7.953475e-52 | -8.615850e-47 |
| Msa0517590 | Msa0880450 | 0.811205 | 7.865926e-51 | -8.615850e-47 |
| Msa0517590 | Msa0894400 | 0.827390 | 1.606313e-54 | -8.615850e-47 |
| Msa0517590 | Msa0910960 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0517590 | Msa0921000 | 0.832132 | 1.125387e-55 | -8.615850e-47 |
| Msa0517590 | Msa0934140 | 0.803032 | 4.229690e-49 | -8.615850e-47 |
| Msa0517590 | Msa0936480 | 0.810147 | 1.331926e-50 | -8.615850e-47 |
| Msa0517590 | Msa0958000 | 0.854827 | 9.493570e-62 | -8.615850e-47 |
| Msa0517590 | Msa0959520 | 0.828093 | 1.088825e-54 | -8.615850e-47 |
| Msa0517590 | Msa0980540 | 0.831198 | 1.912814e-55 | -8.615850e-47 |
| Msa0517590 | Msa0992510 | 0.812235 | 4.694792e-51 | -8.615850e-47 |
| Msa0517590 | Msa1002960 | 0.802096 | 6.595830e-49 | -8.615850e-47 |
| Msa0517590 | Msa1021520 | 0.806852 | 6.725571e-50 | -8.615850e-47 |
| Msa0517590 | Msa1036300 | 0.828303 | 9.688765e-55 | -8.615850e-47 |
| Msa0517590 | Msa1037520 | 0.803666 | 3.126726e-49 | -8.615850e-47 |
| Msa0517590 | Msa1059300 | 0.825204 | 5.325515e-54 | -8.615850e-47 |
| Msa0517590 | Msa1071050 | 0.807941 | 3.951686e-50 | -8.615850e-47 |
| Msa0517590 | Msa1118860 | 0.825538 | 4.439893e-54 | -8.615850e-47 |
| Msa0517590 | Msa1126830 | 0.803177 | 3.947771e-49 | -8.615850e-47 |
| Msa0517590 | Msa1127590 | 0.839085 | 1.955916e-57 | -8.615850e-47 |
| Msa0517590 | Msa1128280 | 0.806678 | 7.318979e-50 | -8.615850e-47 |
| Msa0517590 | Msa1130980 | 0.850075 | 2.147168e-60 | -8.615850e-47 |
| Msa0517590 | Msa1133590 | 0.803617 | 3.200967e-49 | -8.615850e-47 |
| Msa0517590 | Msa1165270 | 0.805623 | 1.220792e-49 | -8.615850e-47 |
| Msa0517590 | Msa1175350 | 0.865130 | 7.382101e-65 | -8.615850e-47 |
| Msa0517590 | Msa1184230 | 0.854456 | 1.216292e-61 | -8.615850e-47 |
| Msa0517590 | Msa1197600 | 0.809782 | 1.596313e-50 | -8.615850e-47 |
| Msa0517590 | Msa1206650 | 0.808107 | 3.644063e-50 | -8.615850e-47 |
| Msa0517590 | Msa1212730 | 0.808967 | 2.387499e-50 | -8.615850e-47 |
| Msa0517590 | Msa1212950 | 0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0517590 | Msa1228040 | 0.853646 | 2.082352e-61 | -8.615850e-47 |
| Msa0517590 | Msa1254560 | 0.811831 | 5.750895e-51 | -8.615850e-47 |
| Msa0517590 | Msa1258030 | -0.827992 | 1.151373e-54 | -8.615850e-47 |
| Msa0517590 | Msa1260220 | 0.817787 | 2.751408e-52 | -8.615850e-47 |
| Msa0517590 | Msa1267830 | 0.837842 | 4.093278e-57 | -8.615850e-47 |
| Msa0517590 | Msa1271130 | 0.827521 | 1.494217e-54 | -8.615850e-47 |
| Msa0517590 | Msa1277260 | 0.806847 | 6.742082e-50 | -8.615850e-47 |
| Msa0517590 | Msa1292020 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0517590 | Msa1308220 | 0.842611 | 2.326891e-58 | -8.615850e-47 |
| Msa0517590 | Msa1315890 | 0.858334 | 8.848832e-63 | -8.615850e-47 |
| Msa0517590 | Msa1327640 | 0.834133 | 3.573943e-56 | -8.615850e-47 |
| Msa0517590 | Msa1334750 | 0.802898 | 4.509855e-49 | -8.615850e-47 |
| Msa0517590 | Msa1340200 | 0.813174 | 2.925651e-51 | -8.615850e-47 |
| Msa0517590 | Msa1341060 | 0.834132 | 3.576541e-56 | -8.615850e-47 |
| Msa0517590 | Msa1356610 | 0.807200 | 5.677726e-50 | -8.615850e-47 |
| Msa0517590 | Msa1365800 | 0.819705 | 1.009515e-52 | -8.615850e-47 |
| Msa0517590 | Msa1367590 | 0.812836 | 3.469591e-51 | -8.615850e-47 |
| Msa0517590 | Msa1368530 | 0.816002 | 6.921602e-52 | -8.615850e-47 |
| Msa0517590 | Msa1373850 | 0.830167 | 3.419853e-55 | -8.615850e-47 |
| Msa0517590 | Msa1392980 | 0.856404 | 3.291322e-62 | -8.615850e-47 |
| Msa0517590 | Msa1411950 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0517590 | Msa1411970 | 0.821808 | 3.315432e-53 | -8.615850e-47 |
| Msa0517590 | Msa1412730 | 0.805901 | 1.067032e-49 | -8.615850e-47 |
| Msa0517590 | Msa1414820 | 0.809466 | 1.866554e-50 | -8.615850e-47 |
| Msa0517590 | Msa1418340 | 0.847681 | 9.913310e-60 | -8.615850e-47 |
| Msa0517590 | Msa1433700 | 0.826418 | 2.742906e-54 | -8.615850e-47 |
| Msa0517590 | Msa1434090 | 0.810666 | 1.029141e-50 | -8.615850e-47 |
| Msa0517590 | Msa1434740 | 0.800113 | 1.678625e-48 | -8.615850e-47 |
| Msa0517590 | Msa1458290 | 0.825122 | 5.568147e-54 | -8.615850e-47 |
| Msa0517590 | Msa1464090 | 0.800604 | 1.333016e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517590 | MtrunA17_Chr3g0128651 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0517590 | AT2G38560.1 | 53.886 | 386 | 147 | 9 | 6 | 369 | 2 | 378 | 7.69e-119 | 349 |
| Msa0517590 | AT2G42725.1 | 48.031 | 127 | 65 | 1 | 189 | 314 | 104 | 230 | 7.26e-32 | 120 |
| Msa0517590 | AT4G18720.1 | 51.724 | 116 | 55 | 1 | 184 | 298 | 100 | 215 | 1.13e-29 | 115 |
| Msa0517590 | AT5G42325.1 | 40.625 | 128 | 58 | 3 | 189 | 314 | 104 | 215 | 2.79e-19 | 86.3 |
Find 120 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAAAGGAAGAGCAATTA+TGG | 0.211694 | 3_4:-69297917 | None:intergenic |
| GCGAGTTTGCATTTGGTAAT+AGG | 0.248412 | 3_4:-69297369 | None:intergenic |
| GTCCTTAATGTTTAATCTTA+AGG | 0.250681 | 3_4:+69297130 | Msa0517590:CDS |
| ATTCAGCGCGAGACAAAATA+AGG | 0.257557 | 3_4:+69296946 | Msa0517590:CDS |
| ATCCTTAAGATTAAACATTA+AGG | 0.282366 | 3_4:-69297132 | None:intergenic |
| ATCAGAAGAACCCTGATTTC+CGG | 0.285749 | 3_4:+69297153 | Msa0517590:CDS |
| TTCTGCGGCTGCGGTGTTAT+TGG | 0.299142 | 3_4:-69294620 | None:intergenic |
| AGGACCTATACTTGACCTTT+TGG | 0.308451 | 3_4:-69297112 | None:intergenic |
| AGTCCGTATTATTTGAAAAC+TGG | 0.312826 | 3_4:+69297072 | Msa0517590:CDS |
| CTGTTGACTTAATTGCGATA+TGG | 0.314443 | 3_4:+69296580 | Msa0517590:CDS |
| GCCAAGGTGGAGAAAGTTAA+TGG | 0.315639 | 3_4:+69296741 | Msa0517590:CDS |
| CTTGGGTTGTACTATTTAGT+AGG | 0.330015 | 3_4:+69297885 | Msa0517590:three_prime_UTR |
| CCGCAGCCGCAGAACACAAC+AGG | 0.331302 | 3_4:+69294629 | Msa0517590:five_prime_UTR |
| AATTGATCAGTAGTAGCTTT+TGG | 0.339749 | 3_4:-69297314 | None:intergenic |
| GAGGCAACGGGTTTCTTCGC+TGG | 0.347716 | 3_4:-69294866 | None:intergenic |
| ACTGTCACTGCCACACGAAT+AGG | 0.349730 | 3_4:-69297047 | None:intergenic |
| TCAACTAATGCTCTTGCATT+TGG | 0.360782 | 3_4:-69297812 | None:intergenic |
| GTTACATTTAGAAATTGTTT+AGG | 0.370539 | 3_4:+69297589 | Msa0517590:three_prime_UTR |
| CAGCACTGCGAGTTTGCATT+TGG | 0.373188 | 3_4:-69297376 | None:intergenic |
| AGCATCCCAGGGAGAACATT+CGG | 0.381324 | 3_4:+69296550 | Msa0517590:CDS |
| CTCCTTCGCTTTGATGTTCG+AGG | 0.381420 | 3_4:-69296841 | None:intergenic |
| CGTCATGAGCTCAGCAGAAA+TGG | 0.387279 | 3_4:+69297217 | Msa0517590:CDS |
| GAACGGGGCCTCTGATTCTA+AGG | 0.389336 | 3_4:+69296638 | Msa0517590:CDS |
| TGTTATGTTATCAAATAAGT+TGG | 0.389468 | 3_4:-69297755 | None:intergenic |
| ATCATAGTCTTCAGCTTTGG+TGG | 0.390447 | 3_4:-69296912 | None:intergenic |
| CTTTGGTGGAGCAGCAGCGC+TGG | 0.398518 | 3_4:-69296898 | None:intergenic |
| AGTTGAGTCCCATCCGATCT+TGG | 0.405397 | 3_4:+69297829 | Msa0517590:three_prime_UTR |
| AGAAAAGGAAGAGCAATTAT+GGG | 0.419297 | 3_4:-69297916 | None:intergenic |
| GAAAACTGGGGTCCTTCAAA+TGG | 0.424609 | 3_4:+69297086 | Msa0517590:CDS |
| CCTGTTGTGTTCTGCGGCTG+CGG | 0.429550 | 3_4:-69294629 | None:intergenic |
| TTGATCATAGTCTTCAGCTT+TGG | 0.429713 | 3_4:-69296915 | None:intergenic |
| TACTGTTGAGCCACAGCGGC+TGG | 0.438165 | 3_4:+69297193 | Msa0517590:CDS |
| TTCAAGCGCATCGAGGCAAC+GGG | 0.440343 | 3_4:-69294878 | None:intergenic |
| GCATCCCAGGGAGAACATTC+GGG | 0.444394 | 3_4:+69296551 | Msa0517590:CDS |
| CTCATGACGGCCAGCCGCTG+TGG | 0.450612 | 3_4:-69297203 | None:intergenic |
| CTGTCACTGCCACACGAATA+GGG | 0.453244 | 3_4:-69297046 | None:intergenic |
| TTTGTTAGTACTGTGGTGAT+TGG | 0.458548 | 3_4:+69297453 | Msa0517590:exon |
| TTATCAAATAAGTTGGGACT+TGG | 0.459330 | 3_4:-69297748 | None:intergenic |
| AGGCAACGGGTTTCTTCGCT+GGG | 0.460026 | 3_4:-69294865 | None:intergenic |
| TTCGTGTAACAGAGAGTGGT+TGG | 0.462260 | 3_4:+69294750 | Msa0517590:intron |
| GAGAAACGAAACAAAAGAAA+AGG | 0.464521 | 3_4:-69294590 | None:intergenic |
| GTTATGTTATCAAATAAGTT+GGG | 0.466360 | 3_4:-69297754 | None:intergenic |
| TCCTTCAAATGGAGCCCAAA+AGG | 0.467781 | 3_4:+69297097 | Msa0517590:CDS |
| AAACTCTCACCAAGCATCCC+AGG | 0.468100 | 3_4:+69296538 | Msa0517590:CDS |
| CAGAGAGTGGTTGGGTTCGA+TGG | 0.468288 | 3_4:+69294759 | Msa0517590:intron |
| GTGGTTGGGTTCGATGGAGA+AGG | 0.470982 | 3_4:+69294765 | Msa0517590:exon |
| GGTTCATCAAAGCTGAGCTC+TGG | 0.479292 | 3_4:+69296768 | Msa0517590:CDS |
| TTCTTCGCTGGGACTATCAT+CGG | 0.481323 | 3_4:-69294854 | None:intergenic |
| AATGTTCTCCCTGGGATGCT+TGG | 0.486291 | 3_4:-69296547 | None:intergenic |
| CAAGTGACATAGGTTGTCAT+AGG | 0.486857 | 3_4:-69297404 | None:intergenic |
| CCCATTAACTTTCTCCACCT+TGG | 0.490756 | 3_4:-69296742 | None:intergenic |
| CCTTTCTCAACCTTCACTGA+AGG | 0.497037 | 3_4:-69296711 | None:intergenic |
| ATGGAAAGACGTAATTATCA+AGG | 0.497212 | 3_4:+69296599 | Msa0517590:CDS |
| GTATCAAATATATGAGCCCT+TGG | 0.497441 | 3_4:+69297867 | Msa0517590:three_prime_UTR |
| GTCCGTATTATTTGAAAACT+GGG | 0.498242 | 3_4:+69297073 | Msa0517590:CDS |
| GTTCAAGCGCATCGAGGCAA+CGG | 0.502578 | 3_4:-69294879 | None:intergenic |
| TCGTGTAACAGAGAGTGGTT+GGG | 0.509152 | 3_4:+69294751 | Msa0517590:intron |
| CCAAGGTGGAGAAAGTTAAT+GGG | 0.509185 | 3_4:+69296742 | Msa0517590:CDS |
| GGGACTATCATCGGTGGAGG+TGG | 0.510748 | 3_4:-69294845 | None:intergenic |
| TTGGGTTGTACTATTTAGTA+GGG | 0.516249 | 3_4:+69297886 | Msa0517590:three_prime_UTR |
| AAAAGCCCGAATGTTCTCCC+TGG | 0.523075 | 3_4:-69296556 | None:intergenic |
| CATGTCAAAGCGTTTAGAAA+AGG | 0.526413 | 3_4:-69297931 | None:intergenic |
| GCAGTTAACACAAGTGACAT+AGG | 0.530050 | 3_4:-69297414 | None:intergenic |
| CTAAGGTTGAGTCAACGAAT+GGG | 0.530166 | 3_4:+69296655 | Msa0517590:CDS |
| TATCAAATATATGAGCCCTT+GGG | 0.532887 | 3_4:+69297868 | Msa0517590:three_prime_UTR |
| GCTCTAGAGTGTTCCAAGAT+CGG | 0.534702 | 3_4:-69297842 | None:intergenic |
| CCTTCAGTGAAGGTTGAGAA+AGG | 0.536034 | 3_4:+69296711 | Msa0517590:CDS |
| AAACAAAAGAAAAGGAGAGA+AGG | 0.536453 | 3_4:-69294582 | None:intergenic |
| GAAGGAGAAAGAGAAAGAGT+TGG | 0.537798 | 3_4:+69294783 | Msa0517590:CDS |
| AGCATCCGCCGCTTTCTTCG+CGG | 0.541475 | 3_4:-69294821 | None:intergenic |
| AGAGGCAGATGAAGATATGA+TGG | 0.547455 | 3_4:+69297004 | Msa0517590:CDS |
| TAGAGTGTTCCAAGATCGGA+TGG | 0.552292 | 3_4:-69297838 | None:intergenic |
| AGAGTGGAAACTCACGAGAA+TGG | 0.556512 | 3_4:-69294654 | None:intergenic |
| GTGGAGAAAGTTAATGGGAA+TGG | 0.557971 | 3_4:+69296747 | Msa0517590:CDS |
| TCTCCGAGATGCTTTAGCTA+AGG | 0.559780 | 3_4:+69296974 | Msa0517590:CDS |
| TTCAGCGCGAGACAAAATAA+GGG | 0.562584 | 3_4:+69296947 | Msa0517590:CDS |
| GCTGAGCTCTGGAAATGTAA+AGG | 0.564072 | 3_4:+69296779 | Msa0517590:CDS |
| TCTAAGGTTGAGTCAACGAA+TGG | 0.570762 | 3_4:+69296654 | Msa0517590:CDS |
| AGTTTGCATTTGGTAATAGG+TGG | 0.578245 | 3_4:-69297366 | None:intergenic |
| AAAGCCCGAATGTTCTCCCT+GGG | 0.578463 | 3_4:-69296555 | None:intergenic |
| CTGATCAATTTAAGTGTGGT+CGG | 0.587454 | 3_4:+69297327 | Msa0517590:CDS |
| TATTCGTGTGGCAGTGACAG+TGG | 0.587816 | 3_4:+69297049 | Msa0517590:CDS |
| GCTTTGTTCGACTGTGAGCG+TGG | 0.588912 | 3_4:+69297284 | Msa0517590:CDS |
| CAGAAATGGCTAGTGAGCAA+AGG | 0.590372 | 3_4:+69297231 | Msa0517590:CDS |
| AGACCTTAGCTAAAGCATCT+CGG | 0.591289 | 3_4:-69296977 | None:intergenic |
| AATGGGGAGAGAGCTAAAGC+TGG | 0.591506 | 3_4:+69296672 | Msa0517590:CDS |
| GTGTTAACTGCAACAACCGT+TGG | 0.591905 | 3_4:+69297426 | Msa0517590:CDS |
| GCAGAAGAGTCCTTCAGTGA+AGG | 0.594554 | 3_4:+69296701 | Msa0517590:CDS |
| AAATGTAAAGGCACAAAATG+TGG | 0.596450 | 3_4:+69296791 | Msa0517590:CDS |
| TTCGCTGGGACTATCATCGG+TGG | 0.598548 | 3_4:-69294851 | None:intergenic |
| GAGCCCAAAAGGTCAAGTAT+AGG | 0.599758 | 3_4:+69297108 | Msa0517590:CDS |
| AACTCTCACCAAGCATCCCA+GGG | 0.605206 | 3_4:+69296539 | Msa0517590:CDS |
| CAAAATTCTCGTCAATACCC+AGG | 0.608507 | 3_4:+69294927 | Msa0517590:CDS |
| GAAAGGAGAAAGTGCCAAGG+TGG | 0.613295 | 3_4:+69296728 | Msa0517590:CDS |
| GCTGGGACTATCATCGGTGG+AGG | 0.613512 | 3_4:-69294848 | None:intergenic |
| CTACTAAATAGTACAACCCA+AGG | 0.617808 | 3_4:-69297884 | None:intergenic |
| ATGGGGAGAGAGCTAAAGCT+GGG | 0.620446 | 3_4:+69296673 | Msa0517590:CDS |
| AGTGTGGTCGGTGTGGACAA+AGG | 0.621667 | 3_4:+69297339 | Msa0517590:CDS |
| TTTAGCTAAGGTCTTTGAAG+AGG | 0.626494 | 3_4:+69296986 | Msa0517590:CDS |
| TGACTCAACCTTAGAATCAG+AGG | 0.626857 | 3_4:-69296646 | None:intergenic |
| CAATTTAAGTGTGGTCGGTG+TGG | 0.627337 | 3_4:+69297332 | Msa0517590:CDS |
| TACCTCGAACATCAAAGCGA+AGG | 0.634021 | 3_4:+69296839 | Msa0517590:CDS |
| CTCGAACATCAAAGCGAAGG+AGG | 0.641252 | 3_4:+69296842 | Msa0517590:CDS |
| ACTACTGATCAATTTAAGTG+TGG | 0.648979 | 3_4:+69297323 | Msa0517590:CDS |
| GTACGAAGCCGCGAAGAAAG+CGG | 0.650598 | 3_4:+69294813 | Msa0517590:CDS |
| TGAGAAAGGAGAAAGTGCCA+AGG | 0.657225 | 3_4:+69296725 | Msa0517590:CDS |
| AGTACTAACAAAACTTCCAA+CGG | 0.659265 | 3_4:-69297442 | None:intergenic |
| TAAGGTTGAGTCAACGAATG+GGG | 0.661593 | 3_4:+69296656 | Msa0517590:CDS |
| AGAGTGTTCCAAGATCGGAT+GGG | 0.676391 | 3_4:-69297837 | None:intergenic |
| ATGGTGCCTGTTGTGTTCTG+CGG | 0.677677 | 3_4:-69294635 | None:intergenic |
| CATTTCTGCTGAGCTCATGA+CGG | 0.685355 | 3_4:-69297216 | None:intergenic |
| CGAAGCCGCGAAGAAAGCGG+CGG | 0.685814 | 3_4:+69294816 | Msa0517590:CDS |
| TCCGTATTATTTGAAAACTG+GGG | 0.694223 | 3_4:+69297074 | Msa0517590:CDS |
| TGCATGTGACCCTATTCGTG+TGG | 0.704457 | 3_4:+69297037 | Msa0517590:CDS |
| ATTCTGGTGCTACAGTAGAG+CGG | 0.706279 | 3_4:-69297551 | None:intergenic |
| GGTGCTACAGTAGAGCGGTG+TGG | 0.717337 | 3_4:-69297546 | None:intergenic |
| TACTAAATAGTACAACCCAA+GGG | 0.719006 | 3_4:-69297883 | None:intergenic |
| ATGAACGTGTGATGTCATTG+CGG | 0.738608 | 3_4:+69297521 | Msa0517590:three_prime_UTR |
| TGAGCTGTTCAAGCGCATCG+AGG | 0.741948 | 3_4:-69294885 | None:intergenic |
| TTGGTACTGTTGAGCCACAG+CGG | 0.773544 | 3_4:+69297189 | Msa0517590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAATACAAGATTT+TGG | - | chr3_4:69295557-69295576 | None:intergenic | 10.0% |
| !! | AAAAATATTGCTATGAAATA+TGG | - | chr3_4:69295947-69295966 | None:intergenic | 15.0% |
| !!! | TGTTTTTAACGTTTTTTGTA+TGG | + | chr3_4:69294725-69294744 | Msa0517590:intron | 20.0% |
| !! | GAATAGAAAAATAATAACCT+GGG | - | chr3_4:69294947-69294966 | None:intergenic | 20.0% |
| !! | TGAATAGAAAAATAATAACC+TGG | - | chr3_4:69294948-69294967 | None:intergenic | 20.0% |
| !! | GAGTTATAGATTTGTAAATT+TGG | + | chr3_4:69295178-69295197 | Msa0517590:intron | 20.0% |
| !!! | TCAATTTTAGGTTTTGTTTT+TGG | + | chr3_4:69295215-69295234 | Msa0517590:intron | 20.0% |
| !!! | GTTTTGTTTTTGGTTAAATT+GGG | + | chr3_4:69295225-69295244 | Msa0517590:intron | 20.0% |
| !! | AAATCAGAAAAAACTATAAC+GGG | - | chr3_4:69295793-69295812 | None:intergenic | 20.0% |
| !! | CAAATCAGAAAAAACTATAA+CGG | - | chr3_4:69295794-69295813 | None:intergenic | 20.0% |
| !!! | TTTCTGATTTGAATAGATTT+TGG | + | chr3_4:69295803-69295822 | Msa0517590:intron | 20.0% |
| !! | TTTGTTTAGAAATATCTGTA+GGG | - | chr3_4:69295908-69295927 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGAAATATCTGT+AGG | - | chr3_4:69295909-69295928 | None:intergenic | 20.0% |
| !! | AATACTAGTTCATAGTTTAT+TGG | + | chr3_4:69295997-69296016 | Msa0517590:intron | 20.0% |
| !! | AACAAACTATTTATTAAGCA+AGG | - | chr3_4:69296168-69296187 | None:intergenic | 20.0% |
| !! | ATAGAAAAAACTGTAGTATT+TGG | + | chr3_4:69296366-69296385 | Msa0517590:intron | 20.0% |
| !! | AAAAGAAATAGAGATAGTTA+AGG | + | chr3_4:69296398-69296417 | Msa0517590:intron | 20.0% |
| !! | AAAGAAATAGAGATAGTTAA+GGG | + | chr3_4:69296399-69296418 | Msa0517590:intron | 20.0% |
| !!! | TCAAATCTTTACTTTTTTCA+TGG | + | chr3_4:69296437-69296456 | Msa0517590:intron | 20.0% |
| !! | GAAACAAGTAAAAATAAGAA+CGG | + | chr3_4:69296621-69296640 | Msa0517590:CDS | 20.0% |
| !! | AAACAAGTAAAAATAAGAAC+GGG | + | chr3_4:69296622-69296641 | Msa0517590:CDS | 20.0% |
| !! | ATCCTTAAGATTAAACATTA+AGG | - | chr3_4:69297135-69297154 | None:intergenic | 20.0% |
| !! | GTTACATTTAGAAATTGTTT+AGG | + | chr3_4:69297589-69297608 | Msa0517590:three_prime_UTR | 20.0% |
| !! | GTTATGTTATCAAATAAGTT+GGG | - | chr3_4:69297757-69297776 | None:intergenic | 20.0% |
| !! | TGTTATGTTATCAAATAAGT+TGG | - | chr3_4:69297758-69297777 | None:intergenic | 20.0% |
| !! | TCTATTCACATTGCAAATTT+TGG | + | chr3_4:69294960-69294979 | Msa0517590:intron | 25.0% |
| !! | TTTTGCATGTTATAGTTGTT+AGG | + | chr3_4:69295056-69295075 | Msa0517590:intron | 25.0% |
| ! | TTTGCATGTTATAGTTGTTA+GGG | + | chr3_4:69295057-69295076 | Msa0517590:intron | 25.0% |
| !!! | GGTTTTGTTTTTGGTTAAAT+TGG | + | chr3_4:69295224-69295243 | Msa0517590:intron | 25.0% |
| ! | CAACTGGCTAATTTAAATTA+CGG | - | chr3_4:69295374-69295393 | None:intergenic | 25.0% |
| !! | ATTTTCCAAAAGATGGATAT+GGG | + | chr3_4:69295448-69295467 | Msa0517590:intron | 25.0% |
| !!! | TTTTTAATTCTTTGATGACG+TGG | + | chr3_4:69295574-69295593 | Msa0517590:intron | 25.0% |
| ! | AACTATGAACTAGTATTTCA+CGG | - | chr3_4:69295994-69296013 | None:intergenic | 25.0% |
| !!! | ACAGTTTTTTCTATCTAGTT+TGG | - | chr3_4:69296360-69296379 | None:intergenic | 25.0% |
| !! | GTAAAGATTTGAGATCAATT+TGG | - | chr3_4:69296429-69296448 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGTAATCTTTC+AGG | + | chr3_4:69296500-69296519 | Msa0517590:intron | 25.0% |
| ! | AACAAGTAAAAATAAGAACG+GGG | + | chr3_4:69296623-69296642 | Msa0517590:CDS | 25.0% |
| ! | GTCCTTAATGTTTAATCTTA+AGG | + | chr3_4:69297130-69297149 | Msa0517590:CDS | 25.0% |
| ! | TAAAACCTGACAAAAAACAT+TGG | - | chr3_4:69297708-69297727 | None:intergenic | 25.0% |
| AAACAAAAGAAAAGGAGAGA+AGG | - | chr3_4:69294585-69294604 | None:intergenic | 30.0% | |
| GAGAAACGAAACAAAAGAAA+AGG | - | chr3_4:69294593-69294612 | None:intergenic | 30.0% | |
| ! | ACGAGAATTTTGTAATTGAC+CGG | - | chr3_4:69294919-69294938 | None:intergenic | 30.0% |
| TTAACATCAACAGAAACTCA+GGG | - | chr3_4:69295252-69295271 | None:intergenic | 30.0% | |
| TTTAACATCAACAGAAACTC+AGG | - | chr3_4:69295253-69295272 | None:intergenic | 30.0% | |
| AATTAAATTAGCACATTGCG+TGG | + | chr3_4:69295271-69295290 | Msa0517590:intron | 30.0% | |
| !!! | ATAGGTTTTGGATTTTGCAA+AGG | + | chr3_4:69295330-69295349 | Msa0517590:intron | 30.0% |
| ATTTAAATTAGCCAGTTGCA+TGG | + | chr3_4:69295376-69295395 | Msa0517590:intron | 30.0% | |
| TATTGTATCGTAATTGAGTC+CGG | + | chr3_4:69295412-69295431 | Msa0517590:intron | 30.0% | |
| GAAAATCCAAAACATATACC+CGG | - | chr3_4:69295434-69295453 | None:intergenic | 30.0% | |
| !! | GTTTTGGATTTTCCAAAAGA+TGG | + | chr3_4:69295441-69295460 | Msa0517590:intron | 30.0% |
| ! | GATTTTCCAAAAGATGGATA+TGG | + | chr3_4:69295447-69295466 | Msa0517590:intron | 30.0% |
| TATCATTGTTGTCGTTATCT+TGG | + | chr3_4:69295642-69295661 | Msa0517590:intron | 30.0% | |
| TATCTTGGAATTTATGACCA+AGG | + | chr3_4:69295657-69295676 | Msa0517590:intron | 30.0% | |
| ! | ACCAAGGATAATGTTATTTG+TGG | + | chr3_4:69295673-69295692 | Msa0517590:intron | 30.0% |
| ACCACAAATAACATTATCCT+TGG | - | chr3_4:69295677-69295696 | None:intergenic | 30.0% | |
| AATGAAACCAATCCTAACTT+TGG | - | chr3_4:69295728-69295747 | None:intergenic | 30.0% | |
| GGAAATCAACTCTTAATGTT+TGG | + | chr3_4:69295824-69295843 | Msa0517590:intron | 30.0% | |
| ! | TGTTTGGAACTTATTGAAAC+TGG | + | chr3_4:69295840-69295859 | Msa0517590:intron | 30.0% |
| GAACTTATTGAAACTGGAAT+GGG | + | chr3_4:69295846-69295865 | Msa0517590:intron | 30.0% | |
| TATGAAATATGGAGAGGATA+CGG | - | chr3_4:69295936-69295955 | None:intergenic | 30.0% | |
| TATTGCTATGAAATATGGAG+AGG | - | chr3_4:69295942-69295961 | None:intergenic | 30.0% | |
| ACTATGAACTAGTATTTCAC+GGG | - | chr3_4:69295993-69296012 | None:intergenic | 30.0% | |
| ! | ATAGTTTATTGGTCTGATTG+TGG | + | chr3_4:69296008-69296027 | Msa0517590:intron | 30.0% |
| !! | TACCAATTTATCTCTGAAAC+TGG | - | chr3_4:69296300-69296319 | None:intergenic | 30.0% |
| ! | AACTGTAGTATTTGGAATTC+AGG | + | chr3_4:69296374-69296393 | Msa0517590:intron | 30.0% |
| ! | ACTGTAGTATTTGGAATTCA+GGG | + | chr3_4:69296375-69296394 | Msa0517590:intron | 30.0% |
| ATGAAAATCGTAACAAGTAC+AGG | - | chr3_4:69296468-69296487 | None:intergenic | 30.0% | |
| ATGGAAAGACGTAATTATCA+AGG | + | chr3_4:69296599-69296618 | Msa0517590:CDS | 30.0% | |
| ! | AAATGTAAAGGCACAAAATG+TGG | + | chr3_4:69296791-69296810 | Msa0517590:CDS | 30.0% |
| AGTCCGTATTATTTGAAAAC+TGG | + | chr3_4:69297072-69297091 | Msa0517590:CDS | 30.0% | |
| GTCCGTATTATTTGAAAACT+GGG | + | chr3_4:69297073-69297092 | Msa0517590:CDS | 30.0% | |
| TCCGTATTATTTGAAAACTG+GGG | + | chr3_4:69297074-69297093 | Msa0517590:CDS | 30.0% | |
| ! | ACCCCAGTTTTCAAATAATA+CGG | - | chr3_4:69297078-69297097 | None:intergenic | 30.0% |
| ! | AATTGATCAGTAGTAGCTTT+TGG | - | chr3_4:69297317-69297336 | None:intergenic | 30.0% |
| ACTACTGATCAATTTAAGTG+TGG | + | chr3_4:69297323-69297342 | Msa0517590:CDS | 30.0% | |
| AGTACTAACAAAACTTCCAA+CGG | - | chr3_4:69297445-69297464 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTGTCAGGTTTTAC+TGG | + | chr3_4:69297709-69297728 | Msa0517590:three_prime_UTR | 30.0% |
| ! | TTATCAAATAAGTTGGGACT+TGG | - | chr3_4:69297751-69297770 | None:intergenic | 30.0% |
| TATCAAATATATGAGCCCTT+GGG | + | chr3_4:69297868-69297887 | Msa0517590:three_prime_UTR | 30.0% | |
| TACTAAATAGTACAACCCAA+GGG | - | chr3_4:69297886-69297905 | None:intergenic | 30.0% | |
| ! | TTGGGTTGTACTATTTAGTA+GGG | + | chr3_4:69297886-69297905 | Msa0517590:three_prime_UTR | 30.0% |
| AGAAAAGGAAGAGCAATTAT+GGG | - | chr3_4:69297919-69297938 | None:intergenic | 30.0% | |
| TAGAAAAGGAAGAGCAATTA+TGG | - | chr3_4:69297920-69297939 | None:intergenic | 30.0% | |
| CAGAGATTTGATATTCAGAG+TGG | - | chr3_4:69294673-69294692 | None:intergenic | 35.0% | |
| ! | TGAACAGCTCAAGAATTTTC+CGG | + | chr3_4:69294897-69294916 | Msa0517590:CDS | 35.0% |
| GTTGTTAGGGTTCAATTCAA+AGG | + | chr3_4:69295070-69295089 | Msa0517590:intron | 35.0% | |
| TTAGGGTTCAATTCAAAGGA+AGG | + | chr3_4:69295074-69295093 | Msa0517590:intron | 35.0% | |
| TAGGGTTCAATTCAAAGGAA+GGG | + | chr3_4:69295075-69295094 | Msa0517590:intron | 35.0% | |
| !! | GAGCTGTGTTGTTCAATTTT+AGG | + | chr3_4:69295203-69295222 | Msa0517590:intron | 35.0% |
| CACATTGCGTGGATATATAT+GGG | + | chr3_4:69295282-69295301 | Msa0517590:intron | 35.0% | |
| ! | TATTGAACCGTAATTGACTC+TGG | + | chr3_4:69295305-69295324 | Msa0517590:intron | 35.0% |
| ! | ATTGAACCGTAATTGACTCT+GGG | + | chr3_4:69295306-69295325 | Msa0517590:intron | 35.0% |
| !! | GTTTTGGATTTTGCAAAGGA+TGG | + | chr3_4:69295334-69295353 | Msa0517590:intron | 35.0% |
| ! | GATTTTGCAAAGGATGGATA+CGG | + | chr3_4:69295340-69295359 | Msa0517590:intron | 35.0% |
| ! | ATTTTGCAAAGGATGGATAC+GGG | + | chr3_4:69295341-69295360 | Msa0517590:intron | 35.0% |
| ATTGTATCGTAATTGAGTCC+GGG | + | chr3_4:69295413-69295432 | Msa0517590:intron | 35.0% | |
| !!! | GCAGTTCACTTTTTCTTTGT+CGG | + | chr3_4:69295607-69295626 | Msa0517590:intron | 35.0% |
| !!! | CAGTTCACTTTTTCTTTGTC+GGG | + | chr3_4:69295608-69295627 | Msa0517590:intron | 35.0% |
| !!! | AGTTCACTTTTTCTTTGTCG+GGG | + | chr3_4:69295609-69295628 | Msa0517590:intron | 35.0% |
| AAATGACAGCTAGTTGTGTT+TGG | + | chr3_4:69295697-69295716 | Msa0517590:intron | 35.0% | |
| TGTTTGGATTCACCAAAGTT+AGG | + | chr3_4:69295713-69295732 | Msa0517590:intron | 35.0% | |
| ! | GAAAAAACTATAACGGGATC+TGG | - | chr3_4:69295787-69295806 | None:intergenic | 35.0% |
| GGAACTTATTGAAACTGGAA+TGG | + | chr3_4:69295845-69295864 | Msa0517590:intron | 35.0% | |
| !!! | TACCGCTTTTTTGGTTTTTG+TGG | + | chr3_4:69296051-69296070 | Msa0517590:intron | 35.0% |
| AGCCACAAAAACCAAAAAAG+CGG | - | chr3_4:69296056-69296075 | None:intergenic | 35.0% | |
| CCATAAGCAAGGTTCATAAA+TGG | - | chr3_4:69296085-69296104 | None:intergenic | 35.0% | |
| CCATTTATGAACCTTGCTTA+TGG | + | chr3_4:69296082-69296101 | Msa0517590:intron | 35.0% | |
| GTGAGTATGCTTGTAAGAAA+AGG | - | chr3_4:69296111-69296130 | None:intergenic | 35.0% | |
| GATTCAGCAACAAGAAATTG+TGG | - | chr3_4:69296138-69296157 | None:intergenic | 35.0% | |
| TGCCAGTTTCAGAGATAAAT+TGG | + | chr3_4:69296295-69296314 | Msa0517590:intron | 35.0% | |
| TTCTGATGTAATCTTTCAGG+TGG | + | chr3_4:69296503-69296522 | Msa0517590:intron | 35.0% | |
| ! | TCTGATGTAATCTTTCAGGT+GGG | + | chr3_4:69296504-69296523 | Msa0517590:intron | 35.0% |
| !! | CTGTTGACTTAATTGCGATA+TGG | + | chr3_4:69296580-69296599 | Msa0517590:CDS | 35.0% |
| TTGATCATAGTCTTCAGCTT+TGG | - | chr3_4:69296918-69296937 | None:intergenic | 35.0% | |
| ! | TTTAGCTAAGGTCTTTGAAG+AGG | + | chr3_4:69296986-69297005 | Msa0517590:CDS | 35.0% |
| ! | AAACTTTTCTCCGGAAATCA+GGG | - | chr3_4:69297166-69297185 | None:intergenic | 35.0% |
| ! | AAAACTTTTCTCCGGAAATC+AGG | - | chr3_4:69297167-69297186 | None:intergenic | 35.0% |
| ! | TACCAAGCAAAACTTTTCTC+CGG | - | chr3_4:69297175-69297194 | None:intergenic | 35.0% |
| CTGATCAATTTAAGTGTGGT+CGG | + | chr3_4:69297327-69297346 | Msa0517590:CDS | 35.0% | |
| ! | AGTTTGCATTTGGTAATAGG+TGG | - | chr3_4:69297369-69297388 | None:intergenic | 35.0% |
| !!! | TGGAAGTTTTGTTAGTACTG+TGG | + | chr3_4:69297446-69297465 | Msa0517590:exon | 35.0% |
| TTTGTTAGTACTGTGGTGAT+TGG | + | chr3_4:69297453-69297472 | Msa0517590:exon | 35.0% | |
| CAGTCTGAACAGAAAAATTC+TGG | - | chr3_4:69297570-69297589 | None:intergenic | 35.0% | |
| !!! | TTGCACCAATGTTTTTTGTC+AGG | + | chr3_4:69297700-69297719 | Msa0517590:three_prime_UTR | 35.0% |
| ! | GTTTTACTGGTGATTCAGAA+TGG | + | chr3_4:69297722-69297741 | Msa0517590:three_prime_UTR | 35.0% |
| TCAACTAATGCTCTTGCATT+TGG | - | chr3_4:69297815-69297834 | None:intergenic | 35.0% | |
| GTATCAAATATATGAGCCCT+TGG | + | chr3_4:69297867-69297886 | Msa0517590:three_prime_UTR | 35.0% | |
| CTACTAAATAGTACAACCCA+AGG | - | chr3_4:69297887-69297906 | None:intergenic | 35.0% | |
| ! | CTTGGGTTGTACTATTTAGT+AGG | + | chr3_4:69297885-69297904 | Msa0517590:three_prime_UTR | 35.0% |
| ! | CATGTCAAAGCGTTTAGAAA+AGG | - | chr3_4:69297934-69297953 | None:intergenic | 35.0% |
| GAAGGAGAAAGAGAAAGAGT+TGG | + | chr3_4:69294783-69294802 | Msa0517590:CDS | 40.0% | |
| CAAAATTCTCGTCAATACCC+AGG | + | chr3_4:69294927-69294946 | Msa0517590:CDS | 40.0% | |
| GCACATTGCGTGGATATATA+TGG | + | chr3_4:69295281-69295300 | Msa0517590:intron | 40.0% | |
| CCTATACCCAGAGTCAATTA+CGG | - | chr3_4:69295315-69295334 | None:intergenic | 40.0% | |
| ! | TTGACTCTGGGTATAGGTTT+TGG | + | chr3_4:69295318-69295337 | Msa0517590:intron | 40.0% |
| TATCCTGATATCCATGCAAC+TGG | - | chr3_4:69295390-69295409 | None:intergenic | 40.0% | |
| ! | TTGAGTCCGGGTATATGTTT+TGG | + | chr3_4:69295425-69295444 | Msa0517590:intron | 40.0% |
| ! | CCATACCCATATCCATCTTT+TGG | - | chr3_4:69295456-69295475 | None:intergenic | 40.0% |
| CCAAAAGATGGATATGGGTA+TGG | + | chr3_4:69295453-69295472 | Msa0517590:intron | 40.0% | |
| !!! | GTTCACTTTTTCTTTGTCGG+GGG | + | chr3_4:69295610-69295629 | Msa0517590:intron | 40.0% |
| !!! | TTCACTTTTTCTTTGTCGGG+GGG | + | chr3_4:69295611-69295630 | Msa0517590:intron | 40.0% |
| GGATTCACCAAAGTTAGGAT+TGG | + | chr3_4:69295718-69295737 | Msa0517590:intron | 40.0% | |
| AAATATGGAGAGGATACGGT+AGG | - | chr3_4:69295932-69295951 | None:intergenic | 40.0% | |
| ACCAAAAAAGCGGTATAGTG+TGG | - | chr3_4:69296046-69296065 | None:intergenic | 40.0% | |
| AGAAAAGGAAGCCATAAGCA+AGG | - | chr3_4:69296096-69296115 | None:intergenic | 40.0% | |
| TGACTCAACCTTAGAATCAG+AGG | - | chr3_4:69296649-69296668 | None:intergenic | 40.0% | |
| ! | TCTAAGGTTGAGTCAACGAA+TGG | + | chr3_4:69296654-69296673 | Msa0517590:CDS | 40.0% |
| CTAAGGTTGAGTCAACGAAT+GGG | + | chr3_4:69296655-69296674 | Msa0517590:CDS | 40.0% | |
| TAAGGTTGAGTCAACGAATG+GGG | + | chr3_4:69296656-69296675 | Msa0517590:CDS | 40.0% | |
| CCAAGGTGGAGAAAGTTAAT+GGG | + | chr3_4:69296742-69296761 | Msa0517590:CDS | 40.0% | |
| GTGGAGAAAGTTAATGGGAA+TGG | + | chr3_4:69296747-69296766 | Msa0517590:CDS | 40.0% | |
| ! | ATTTTCTTTGCCGCAGATAC+TGG | - | chr3_4:69296873-69296892 | None:intergenic | 40.0% |
| ! | ATCATAGTCTTCAGCTTTGG+TGG | - | chr3_4:69296915-69296934 | None:intergenic | 40.0% |
| ATTCAGCGCGAGACAAAATA+AGG | + | chr3_4:69296946-69296965 | Msa0517590:CDS | 40.0% | |
| TTCAGCGCGAGACAAAATAA+GGG | + | chr3_4:69296947-69296966 | Msa0517590:CDS | 40.0% | |
| ! | AGACCTTAGCTAAAGCATCT+CGG | - | chr3_4:69296980-69296999 | None:intergenic | 40.0% |
| AGAGGCAGATGAAGATATGA+TGG | + | chr3_4:69297004-69297023 | Msa0517590:CDS | 40.0% | |
| ! | GGACCTATACTTGACCTTTT+GGG | - | chr3_4:69297114-69297133 | None:intergenic | 40.0% |
| ! | AGGACCTATACTTGACCTTT+TGG | - | chr3_4:69297115-69297134 | None:intergenic | 40.0% |
| ATCAGAAGAACCCTGATTTC+CGG | + | chr3_4:69297153-69297172 | Msa0517590:CDS | 40.0% | |
| ! | TTCCGGAGAAAAGTTTTGCT+TGG | + | chr3_4:69297170-69297189 | Msa0517590:CDS | 40.0% |
| ! | GCGAGTTTGCATTTGGTAAT+AGG | - | chr3_4:69297372-69297391 | None:intergenic | 40.0% |
| CAAGTGACATAGGTTGTCAT+AGG | - | chr3_4:69297407-69297426 | None:intergenic | 40.0% | |
| GCAGTTAACACAAGTGACAT+AGG | - | chr3_4:69297417-69297436 | None:intergenic | 40.0% | |
| ATGAACGTGTGATGTCATTG+CGG | + | chr3_4:69297521-69297540 | Msa0517590:three_prime_UTR | 40.0% | |
| AGAGTGGAAACTCACGAGAA+TGG | - | chr3_4:69294657-69294676 | None:intergenic | 45.0% | |
| ! | GGTTTTCGTGTAACAGAGAG+TGG | + | chr3_4:69294746-69294765 | Msa0517590:intron | 45.0% |
| TTCGTGTAACAGAGAGTGGT+TGG | + | chr3_4:69294750-69294769 | Msa0517590:intron | 45.0% | |
| TCGTGTAACAGAGAGTGGTT+GGG | + | chr3_4:69294751-69294770 | Msa0517590:intron | 45.0% | |
| TTCTTCGCTGGGACTATCAT+CGG | - | chr3_4:69294857-69294876 | None:intergenic | 45.0% | |
| ! | CCGTAATTGACTCTGGGTAT+AGG | + | chr3_4:69295312-69295331 | Msa0517590:intron | 45.0% |
| TAGCCAGTTGCATGGATATC+AGG | + | chr3_4:69295384-69295403 | Msa0517590:intron | 45.0% | |
| CCTACACTAACCCTCAGTAA+CGG | - | chr3_4:69295481-69295500 | None:intergenic | 45.0% | |
| !!! | TCACTTTTTCTTTGTCGGGG+GGG | + | chr3_4:69295612-69295631 | Msa0517590:intron | 45.0% |
| !!! | GCCACACTATACCGCTTTTT+TGG | + | chr3_4:69296042-69296061 | Msa0517590:intron | 45.0% |
| CCTTTCTCAACCTTCACTGA+AGG | - | chr3_4:69296714-69296733 | None:intergenic | 45.0% | |
| CCTTCAGTGAAGGTTGAGAA+AGG | + | chr3_4:69296711-69296730 | Msa0517590:CDS | 45.0% | |
| !! | TGAGAAAGGAGAAAGTGCCA+AGG | + | chr3_4:69296725-69296744 | Msa0517590:CDS | 45.0% |
| GCCAAGGTGGAGAAAGTTAA+TGG | + | chr3_4:69296741-69296760 | Msa0517590:CDS | 45.0% | |
| CCCATTAACTTTCTCCACCT+TGG | - | chr3_4:69296745-69296764 | None:intergenic | 45.0% | |
| !! | GCTGAGCTCTGGAAATGTAA+AGG | + | chr3_4:69296779-69296798 | Msa0517590:CDS | 45.0% |
| TACCTCGAACATCAAAGCGA+AGG | + | chr3_4:69296839-69296858 | Msa0517590:CDS | 45.0% | |
| GGAGGAAAAACCAGTATCTG+CGG | + | chr3_4:69296860-69296879 | Msa0517590:CDS | 45.0% | |
| TCTCCGAGATGCTTTAGCTA+AGG | + | chr3_4:69296974-69296993 | Msa0517590:CDS | 45.0% | |
| GAAAACTGGGGTCCTTCAAA+TGG | + | chr3_4:69297086-69297105 | Msa0517590:CDS | 45.0% | |
| TCCTTCAAATGGAGCCCAAA+AGG | + | chr3_4:69297097-69297116 | Msa0517590:CDS | 45.0% | |
| ! | ACCTTTTGGGCTCCATTTGA+AGG | - | chr3_4:69297101-69297120 | None:intergenic | 45.0% |
| GAGCCCAAAAGGTCAAGTAT+AGG | + | chr3_4:69297108-69297127 | Msa0517590:CDS | 45.0% | |
| CATTTCTGCTGAGCTCATGA+CGG | - | chr3_4:69297219-69297238 | None:intergenic | 45.0% | |
| CAGAAATGGCTAGTGAGCAA+AGG | + | chr3_4:69297231-69297250 | Msa0517590:CDS | 45.0% | |
| CAATTTAAGTGTGGTCGGTG+TGG | + | chr3_4:69297332-69297351 | Msa0517590:CDS | 45.0% | |
| GTGTTAACTGCAACAACCGT+TGG | + | chr3_4:69297426-69297445 | Msa0517590:CDS | 45.0% | |
| !! | ATTCTGGTGCTACAGTAGAG+CGG | - | chr3_4:69297554-69297573 | None:intergenic | 45.0% |
| ! | AGAGTGTTCCAAGATCGGAT+GGG | - | chr3_4:69297840-69297859 | None:intergenic | 45.0% |
| ! | TAGAGTGTTCCAAGATCGGA+TGG | - | chr3_4:69297841-69297860 | None:intergenic | 45.0% |
| !! | GCTCTAGAGTGTTCCAAGAT+CGG | - | chr3_4:69297845-69297864 | None:intergenic | 45.0% |
| ATGGTGCCTGTTGTGTTCTG+CGG | - | chr3_4:69294638-69294657 | None:intergenic | 50.0% | |
| GCAAAGGATGGATACGGGTA+AGG | + | chr3_4:69295346-69295365 | Msa0517590:intron | 50.0% | |
| ! | CCGTTACTGAGGGTTAGTGT+AGG | + | chr3_4:69295478-69295497 | Msa0517590:intron | 50.0% |
| AAACTCTCACCAAGCATCCC+AGG | + | chr3_4:69296538-69296557 | Msa0517590:CDS | 50.0% | |
| AACTCTCACCAAGCATCCCA+GGG | + | chr3_4:69296539-69296558 | Msa0517590:CDS | 50.0% | |
| AATGTTCTCCCTGGGATGCT+TGG | - | chr3_4:69296550-69296569 | None:intergenic | 50.0% | |
| AGCATCCCAGGGAGAACATT+CGG | + | chr3_4:69296550-69296569 | Msa0517590:CDS | 50.0% | |
| AAAGCCCGAATGTTCTCCCT+GGG | - | chr3_4:69296558-69296577 | None:intergenic | 50.0% | |
| AAAAGCCCGAATGTTCTCCC+TGG | - | chr3_4:69296559-69296578 | None:intergenic | 50.0% | |
| AATGGGGAGAGAGCTAAAGC+TGG | + | chr3_4:69296672-69296691 | Msa0517590:CDS | 50.0% | |
| ATGGGGAGAGAGCTAAAGCT+GGG | + | chr3_4:69296673-69296692 | Msa0517590:CDS | 50.0% | |
| GCAGAAGAGTCCTTCAGTGA+AGG | + | chr3_4:69296701-69296720 | Msa0517590:CDS | 50.0% | |
| !! | GAAAGGAGAAAGTGCCAAGG+TGG | + | chr3_4:69296728-69296747 | Msa0517590:CDS | 50.0% |
| GGTTCATCAAAGCTGAGCTC+TGG | + | chr3_4:69296768-69296787 | Msa0517590:CDS | 50.0% | |
| CTCCTTCGCTTTGATGTTCG+AGG | - | chr3_4:69296844-69296863 | None:intergenic | 50.0% | |
| CTCGAACATCAAAGCGAAGG+AGG | + | chr3_4:69296842-69296861 | Msa0517590:CDS | 50.0% | |
| TGCATGTGACCCTATTCGTG+TGG | + | chr3_4:69297037-69297056 | Msa0517590:CDS | 50.0% | |
| CTGTCACTGCCACACGAATA+GGG | - | chr3_4:69297049-69297068 | None:intergenic | 50.0% | |
| ACTGTCACTGCCACACGAAT+AGG | - | chr3_4:69297050-69297069 | None:intergenic | 50.0% | |
| TATTCGTGTGGCAGTGACAG+TGG | + | chr3_4:69297049-69297068 | Msa0517590:CDS | 50.0% | |
| TTGGTACTGTTGAGCCACAG+CGG | + | chr3_4:69297189-69297208 | Msa0517590:CDS | 50.0% | |
| CGTCATGAGCTCAGCAGAAA+TGG | + | chr3_4:69297217-69297236 | Msa0517590:CDS | 50.0% | |
| CAGCACTGCGAGTTTGCATT+TGG | - | chr3_4:69297379-69297398 | None:intergenic | 50.0% | |
| AGTTGAGTCCCATCCGATCT+TGG | + | chr3_4:69297829-69297848 | Msa0517590:three_prime_UTR | 50.0% | |
| !! | TTCTGCGGCTGCGGTGTTAT+TGG | - | chr3_4:69294623-69294642 | None:intergenic | 55.0% |
| CAGAGAGTGGTTGGGTTCGA+TGG | + | chr3_4:69294759-69294778 | Msa0517590:intron | 55.0% | |
| GTGGTTGGGTTCGATGGAGA+AGG | + | chr3_4:69294765-69294784 | Msa0517590:exon | 55.0% | |
| GTACGAAGCCGCGAAGAAAG+CGG | + | chr3_4:69294813-69294832 | Msa0517590:CDS | 55.0% | |
| TTCGCTGGGACTATCATCGG+TGG | - | chr3_4:69294854-69294873 | None:intergenic | 55.0% | |
| ! | AGGCAACGGGTTTCTTCGCT+GGG | - | chr3_4:69294868-69294887 | None:intergenic | 55.0% |
| TTCAAGCGCATCGAGGCAAC+GGG | - | chr3_4:69294881-69294900 | None:intergenic | 55.0% | |
| GTTCAAGCGCATCGAGGCAA+CGG | - | chr3_4:69294882-69294901 | None:intergenic | 55.0% | |
| TGAGCTGTTCAAGCGCATCG+AGG | - | chr3_4:69294888-69294907 | None:intergenic | 55.0% | |
| TGGGTATGGCACCGTTACTG+AGG | + | chr3_4:69295467-69295486 | Msa0517590:intron | 55.0% | |
| GGGTATGGCACCGTTACTGA+GGG | + | chr3_4:69295468-69295487 | Msa0517590:intron | 55.0% | |
| ! | CTGAGGGTTAGTGTAGGCGT+CGG | + | chr3_4:69295484-69295503 | Msa0517590:intron | 55.0% |
| GCATCCCAGGGAGAACATTC+GGG | + | chr3_4:69296551-69296570 | Msa0517590:CDS | 55.0% | |
| GAACGGGGCCTCTGATTCTA+AGG | + | chr3_4:69296638-69296657 | Msa0517590:CDS | 55.0% | |
| ! | GCTTTGTTCGACTGTGAGCG+TGG | + | chr3_4:69297284-69297303 | Msa0517590:CDS | 55.0% |
| AGTGTGGTCGGTGTGGACAA+AGG | + | chr3_4:69297339-69297358 | Msa0517590:CDS | 55.0% | |
| CCTGTTGTGTTCTGCGGCTG+CGG | - | chr3_4:69294632-69294651 | None:intergenic | 60.0% | |
| ! | AGCATCCGCCGCTTTCTTCG+CGG | - | chr3_4:69294824-69294843 | None:intergenic | 60.0% |
| GGGACTATCATCGGTGGAGG+TGG | - | chr3_4:69294848-69294867 | None:intergenic | 60.0% | |
| GCTGGGACTATCATCGGTGG+AGG | - | chr3_4:69294851-69294870 | None:intergenic | 60.0% | |
| ! | GAGGCAACGGGTTTCTTCGC+TGG | - | chr3_4:69294869-69294888 | None:intergenic | 60.0% |
| TTCTTTGTCGGGGGGGCAGA+AGG | + | chr3_4:69295619-69295638 | Msa0517590:intron | 60.0% | |
| TACTGTTGAGCCACAGCGGC+TGG | + | chr3_4:69297193-69297212 | Msa0517590:CDS | 60.0% | |
| ! | GGTGCTACAGTAGAGCGGTG+TGG | - | chr3_4:69297549-69297568 | None:intergenic | 60.0% |
| CCGCAGCCGCAGAACACAAC+AGG | + | chr3_4:69294629-69294648 | Msa0517590:five_prime_UTR | 65.0% | |
| CGAAGCCGCGAAGAAAGCGG+CGG | + | chr3_4:69294816-69294835 | Msa0517590:CDS | 65.0% | |
| CTTTGGTGGAGCAGCAGCGC+TGG | - | chr3_4:69296901-69296920 | None:intergenic | 65.0% | |
| CTCATGACGGCCAGCCGCTG+TGG | - | chr3_4:69297206-69297225 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 69294555 | 69297957 | 69294555 | ID=Msa0517590;Name=Msa0517590 |
| chr3_4 | mRNA | 69294555 | 69297957 | 69294555 | ID=Msa0517590-mRNA-1;Parent=Msa0517590;Name=Msa0517590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|1|1|0.5|0.66|3|497|369 |
| chr3_4 | exon | 69294555 | 69294661 | 69294555 | ID=Msa0517590-mRNA-1:exon:18424;Parent=Msa0517590-mRNA-1 |
| chr3_4 | exon | 69294762 | 69294948 | 69294762 | ID=Msa0517590-mRNA-1:exon:18425;Parent=Msa0517590-mRNA-1 |
| chr3_4 | exon | 69296522 | 69297957 | 69296522 | ID=Msa0517590-mRNA-1:exon:18426;Parent=Msa0517590-mRNA-1 |
| chr3_4 | five_prime_UTR | 69294555 | 69294661 | 69294555 | ID=Msa0517590-mRNA-1:five_prime_utr;Parent=Msa0517590-mRNA-1 |
| chr3_4 | five_prime_UTR | 69294762 | 69294777 | 69294762 | ID=Msa0517590-mRNA-1:five_prime_utr;Parent=Msa0517590-mRNA-1 |
| chr3_4 | CDS | 69294778 | 69294948 | 69294778 | ID=Msa0517590-mRNA-1:cds;Parent=Msa0517590-mRNA-1 |
| chr3_4 | CDS | 69296522 | 69297460 | 69296522 | ID=Msa0517590-mRNA-1:cds;Parent=Msa0517590-mRNA-1 |
| chr3_4 | three_prime_UTR | 69297461 | 69297957 | 69297461 | ID=Msa0517590-mRNA-1:three_prime_utr;Parent=Msa0517590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
