AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081270 MtrunA17_Chr1g0193691 98.318 892 15 0 1 892 1 892 0.0 1825
Msa0081270 MtrunA17_Chr4g0054811 58.769 325 119 4 573 892 462 776 2.30e-114 367
Msa0081270 MtrunA17_Chr4g0054811 38.636 396 135 17 1 358 1 326 8.77e-53 197
Msa0081270 MtrunA17_Chr4g0031521 52.522 337 133 4 555 890 392 702 5.27e-109 351
Msa0081270 MtrunA17_Chr4g0031521 38.108 370 157 11 1 347 1 321 1.43e-56 207
Msa0081270 MtrunA17_Chr7g0238501 45.902 305 104 3 586 890 310 553 2.89e-79 267
Msa0081270 MtrunA17_Chr7g0238501 26.394 269 158 7 98 355 66 305 9.07e-17 84.7
Msa0081270 MtrunA17_Chr4g0039061 45.902 305 106 5 587 891 245 490 2.30e-74 252
Msa0081270 MtrunA17_Chr4g0039061 45.238 84 44 1 286 367 175 258 6.48e-18 87.8
Msa0081270 MtrunA17_Chr4g0067301 35.932 295 138 2 589 883 244 487 4.39e-56 201
Msa0081270 MtrunA17_Chr4g0067301 54.098 61 28 0 289 349 140 200 2.91e-12 70.1
Msa0081270 MtrunA17_Chr2g0295991 47.674 172 90 0 712 883 305 476 1.04e-47 177
Msa0081270 MtrunA17_Chr2g0295991 50.746 67 33 0 289 355 142 208 2.01e-13 73.9
Msa0081270 MtrunA17_Chr1g0213351 28.188 298 149 5 592 884 118 355 5.99e-33 131
Msa0081270 MtrunA17_Chr1g0207571 29.412 306 153 5 592 892 99 346 1.42e-31 127
Msa0081270 MtrunA17_Chr7g0263281 28.904 301 149 5 592 887 109 349 1.38e-29 121
Msa0081270 MtrunA17_Chr1g0181901 26.970 330 147 6 592 887 114 383 2.42e-29 121
Msa0081270 MtrunA17_Chr7g0250061 35.393 178 106 3 715 887 181 354 1.50e-26 112
Msa0081270 MtrunA17_Chr8g0371321 35.393 178 106 3 715 887 184 357 6.63e-26 111
Msa0081270 MtrunA17_Chr1g0211251 38.202 178 101 3 715 887 186 359 7.53e-26 110
Msa0081270 MtrunA17_Chr3g0089691 33.005 203 116 6 696 884 65 261 1.25e-22 99.8
Msa0081270 MtrunA17_Chr7g0223641 39.231 130 71 2 762 883 67 196 2.19e-22 96.3
Msa0081270 MtrunA17_Chr3g0089711 33.005 203 116 6 696 884 151 347 4.89e-22 99.0
Msa0081270 MtrunA17_Chr3g0089721 33.005 203 116 6 696 884 151 347 9.00e-22 98.2
Msa0081270 MtrunA17_Chr1g0175381 31.461 178 113 3 712 884 180 353 1.04e-21 98.6
Msa0081270 MtrunA17_Chr2g0294291 33.333 174 107 3 715 883 181 350 2.73e-21 97.1
Msa0081270 MtrunA17_Chr7g0256751 31.500 200 117 6 696 881 152 345 1.69e-17 86.3
Msa0081270 MtrunA17_Chr7g0256771 32.374 139 86 3 696 826 153 291 1.59e-13 72.8
Msa0081270 MtrunA17_Chr4g0063051 28.652 178 98 5 713 888 163 313 8.28e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081270 AT2G46920.3 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0081270 AT2G46920.1 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0081270 AT2G46920.2 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0081270 AT2G46920.4 62.959 899 271 16 1 892 1 844 0.0 1081
Msa0081270 AT1G07630.1 53.824 340 126 6 555 890 348 660 3.73e-114 364
Msa0081270 AT1G07630.1 39.730 370 145 13 1 347 1 315 1.91e-62 224
Msa0081270 AT2G35350.1 50.131 383 168 8 517 892 414 780 9.17e-109 353
Msa0081270 AT2G35350.1 38.227 361 129 14 25 354 37 334 6.76e-47 180
Msa0081270 AT2G28890.1 55.960 302 110 3 589 890 374 652 8.76e-108 347
Msa0081270 AT2G28890.1 42.033 364 139 13 1 347 1 309 8.13e-64 228
Msa0081270 AT5G02400.1 55.844 308 110 5 584 891 392 673 7.13e-106 342
Msa0081270 AT5G02400.1 36.628 344 132 11 31 349 31 313 1.33e-47 181
Msa0081270 AT3G09400.1 56.209 306 101 5 586 891 377 649 5.69e-105 339
Msa0081270 AT3G09400.1 33.060 366 163 12 1 346 1 304 9.49e-39 154
Msa0081270 AT3G09400.2 52.222 270 96 5 586 855 377 613 4.45e-79 270
Msa0081270 AT3G09400.2 33.060 366 163 12 1 346 1 304 6.88e-39 154
Msa0081270 AT3G16560.1 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0081270 AT3G16560.4 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0081270 AT3G16560.2 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa0081270 AT3G16560.3 41.667 144 84 0 712 855 309 452 1.54e-33 135
Msa0081270 AT4G38520.2 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa0081270 AT4G38520.1 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa0081270 AT3G12620.2 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa0081270 AT3G12620.1 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa0081270 AT5G06750.2 26.578 301 159 4 592 887 38 281 8.86e-29 118
Msa0081270 AT5G06750.3 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa0081270 AT5G06750.1 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa0081270 AT3G55050.1 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa0081270 AT3G55050.2 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa0081270 AT3G51370.2 35.429 175 104 3 715 884 99 269 6.58e-27 112
Msa0081270 AT5G66080.2 37.079 178 103 3 712 884 80 253 1.31e-26 110
Msa0081270 AT3G17090.1 36.364 176 103 3 713 883 187 358 3.72e-26 112
Msa0081270 AT3G51370.1 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa0081270 AT3G51370.3 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa0081270 AT5G66080.1 37.079 178 103 3 712 884 184 357 1.34e-25 110
Msa0081270 AT5G02760.1 39.205 176 98 3 713 883 173 344 5.12e-24 105
Msa0081270 AT4G33920.3 34.286 175 106 3 715 884 56 226 3.78e-23 100
Msa0081270 AT4G33920.2 34.286 175 106 3 715 884 86 256 7.04e-23 100
Msa0081270 AT4G33920.1 34.286 175 106 3 715 884 169 339 2.98e-22 100
Msa0081270 AT3G17090.2 37.069 116 68 2 713 823 187 302 2.87e-17 84.3

Find 273 sgRNAs with CRISPR-Local

Find 524 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGAGCTTTCTTATTTA+TGG 0.115163 1_2:+59761616 None:intergenic
TCTCTTTCTTTCTTCTTTCT+TGG 0.148286 1_2:+59768504 None:intergenic
TTTCAGGGACTTCGGGTTTA+AGG 0.173499 1_2:+59766790 None:intergenic
ATCAAGACAATATGCAAATA+TGG 0.178352 1_2:+59761750 None:intergenic
CTTCTTCATTGCTGAAATAT+TGG 0.212752 1_2:+59763705 None:intergenic
CATGTTTGCTGGTGATTTCT+TGG 0.218670 1_2:-59767486 Msa0081270:CDS
AAATCCAGAACTTGCTATAA+TGG 0.219054 1_2:-59766013 Msa0081270:CDS
AATAATAATAATTGGAGATT+TGG 0.224260 1_2:+59768428 None:intergenic
ACTACGTTTAAGACGATTTC+AGG 0.226435 1_2:-59767566 Msa0081270:CDS
CAGCCAGTTCCACGCGGTTC+TGG 0.228026 1_2:-59767413 Msa0081270:CDS
GATTGATCCTTGATTAATTC+AGG 0.235778 1_2:+59766672 None:intergenic
GAACAAGGGTGGTTGTTTAT+TGG 0.236233 1_2:-59766933 Msa0081270:CDS
GGGAGATAGTCGTGTGATTT+TGG 0.243703 1_2:-59765935 Msa0081270:CDS
GATTTCTAAAATCAATTTAC+TGG 0.245549 1_2:+59761710 None:intergenic
GAGTAATAATGGGGTGGTTA+TGG 0.255294 1_2:-59767968 Msa0081270:five_prime_UTR
GAAAAGGTAAAAGAAGTTTA+AGG 0.257265 1_2:-59766527 Msa0081270:CDS
ATCTGTCATGGTCGTTTCTT+TGG 0.260064 1_2:-59761866 Msa0081270:CDS
AACAAGGGTGGTTGTTTATT+GGG 0.261849 1_2:-59766932 Msa0081270:CDS
CTCTTTCTTTCTTCTTTCTT+GGG 0.265047 1_2:+59768505 None:intergenic
GGGTAAATTCAAAACAAATT+AGG 0.279468 1_2:+59761638 None:intergenic
CATGGTCAAGTGAGTAATAA+TGG 0.297271 1_2:-59767979 Msa0081270:five_prime_UTR
ATCGTCTTAAACGTAGTTTC+AGG 0.297907 1_2:+59767572 None:intergenic
ATGGAGCATTCTAATTCTTC+TGG 0.301105 1_2:-59767620 Msa0081270:CDS
AGTAATAATGGGGTGGTTAT+GGG 0.306325 1_2:-59767967 Msa0081270:five_prime_UTR
TTCTTCAAGTGACCGATTCT+TGG 0.307365 1_2:-59763750 Msa0081270:CDS
GGGGTGGTTATGGGGTTTGA+TGG 0.308122 1_2:-59767958 Msa0081270:five_prime_UTR
AATCCAGAACTTGCTATAAT+GGG 0.309261 1_2:-59766012 Msa0081270:CDS
TTAACAGAGAAGCACTTAAA+AGG 0.310457 1_2:+59761790 None:intergenic
TTAAGAGCTTTCTTATTTAT+GGG 0.310990 1_2:+59761617 None:intergenic
AGAAGTGGTGGTTTCATGTC+TGG 0.317726 1_2:-59767329 Msa0081270:CDS
TTAAAAGTTACCAGAGCATT+TGG 0.331448 1_2:-59764930 Msa0081270:CDS
AGCTACTTCAAATGGAATCT+TGG 0.332616 1_2:-59766497 Msa0081270:CDS
TATTGTGCAGGATCGCCTTC+TGG 0.333824 1_2:+59763647 None:intergenic
ATTAAACAATAACCTTGAAA+TGG 0.336830 1_2:-59768206 Msa0081270:five_prime_UTR
TCTTGATATTGAAACAATCT+TGG 0.339496 1_2:-59761734 Msa0081270:three_prime_UTR
CGCGGTTCTGGACCTTTGAA+TGG 0.340155 1_2:-59767401 Msa0081270:CDS
TTTCTTTGGAGGGAAGGATT+TGG 0.340333 1_2:-59761852 Msa0081270:CDS
TTTCACTCGATCATTCAATA+TGG 0.340343 1_2:+59764959 None:intergenic
AGGTTATTGTTTAATTTGAT+TGG 0.342556 1_2:+59768214 None:intergenic
AGATGTTTATGTCATGAATC+TGG 0.343955 1_2:-59765956 Msa0081270:CDS
GAGCCATTAGATGAAGGTTT+AGG 0.346607 1_2:-59767776 Msa0081270:CDS
GACCCCATTATAGCAAGTTC+TGG 0.349623 1_2:+59766009 None:intergenic
TCCTTTGATCTGACCCTTTG+AGG 0.354335 1_2:-59768102 Msa0081270:five_prime_UTR
AGGGAAAGGCCGGTGAAGAT+AGG 0.358505 1_2:-59766977 Msa0081270:CDS
GAAAATGGAAGCACTGGGTT+TGG 0.360276 1_2:-59766348 Msa0081270:CDS
TCAAGACAATATGCAAATAT+GGG 0.366055 1_2:+59761751 None:intergenic
TTCAGGGACTTCGGGTTTAA+GGG 0.372236 1_2:+59766791 None:intergenic
CCGTCTACATCAGGGGAAAA+TGG 0.373824 1_2:-59766363 Msa0081270:CDS
TCTTTCCTTGGAGTTATGAT+TGG 0.374905 1_2:-59766200 Msa0081270:CDS
ATTTCCGACCGACTGGATTC+TGG 0.375849 1_2:+59766747 None:intergenic
TTTAAAGTTTCAGGGACTTC+GGG 0.377366 1_2:+59766783 None:intergenic
TTTGTATTTGTATTTGTTGA+GGG 0.384181 1_2:-59767911 Msa0081270:five_prime_UTR
TAGATTTCTAGACAAAGAAT+TGG 0.384327 1_2:-59766853 Msa0081270:CDS
AACAGCTTCGTGCTCCTTGT+TGG 0.386048 1_2:+59766320 None:intergenic
GTGTTTCAAGTTAAATATAT+CGG 0.387374 1_2:-59763821 Msa0081270:CDS
GAACCTGCTGCTTCGTTTGA+GGG 0.388487 1_2:-59767464 Msa0081270:CDS
TACTTCCACAATTAGATAAC+TGG 0.389161 1_2:+59766595 None:intergenic
GGTCCAGAACCGCGTGGAAC+TGG 0.389417 1_2:+59767410 None:intergenic
TTCTTCTGGTTTACACAAGC+AGG 0.391131 1_2:-59767606 Msa0081270:CDS
AAACCTTGAGTGGTTCGTTT+AGG 0.394527 1_2:-59767652 Msa0081270:CDS
TCCTTGACAGAGCTTGAATT+AGG 0.400913 1_2:+59765886 None:intergenic
AGAAGAGAAGCTCTGCAATA+AGG 0.401305 1_2:+59763624 None:intergenic
GGAACCTGCTGCTTCGTTTG+AGG 0.404499 1_2:-59767465 Msa0081270:CDS
CATGAAAAGTTGACTGGAAA+AGG 0.405025 1_2:-59766543 Msa0081270:CDS
TTGGAGAGAGGCTTTGCCTC+AGG 0.406640 1_2:-59767362 Msa0081270:CDS
GCATAATCTGCAGTGGGCTC+AGG 0.409987 1_2:-59766997 Msa0081270:CDS
AACGGCACTTCTCGTGTTGT+TGG 0.410651 1_2:-59767848 Msa0081270:CDS
GGCCATGCCAACTGAGTAAC+CGG 0.412628 1_2:+59767104 None:intergenic
TGTCCTAAACCTTCATCTAA+TGG 0.414208 1_2:+59767773 None:intergenic
AAGAATTGGAAGGTTTACTT+TGG 0.414277 1_2:-59766839 Msa0081270:CDS
GCAAAGGTTGTTCTTTCAAC+CGG 0.415006 1_2:-59767123 Msa0081270:CDS
TCTTGATAACATGATTGTTA+TGG 0.415311 1_2:+59765779 None:intergenic
CGGCCTACACTTAGTATCTC+TGG 0.415577 1_2:+59767079 None:intergenic
GCTTTATGAGCTACTTCAAA+TGG 0.418404 1_2:-59766505 Msa0081270:CDS
TGATTGTTATGGTTGTGAAT+TGG 0.419136 1_2:+59765790 None:intergenic
GATGAAGGCCCGTCTACATC+AGG 0.424284 1_2:-59766372 Msa0081270:CDS
GGGTGGTTATGGGGTTTGAT+GGG 0.424314 1_2:-59767957 Msa0081270:five_prime_UTR
CTTGATATTGAAACAATCTT+GGG 0.428125 1_2:-59761733 Msa0081270:three_prime_UTR
TTAAACAATAACCTTGAAAT+GGG 0.428739 1_2:-59768205 Msa0081270:five_prime_UTR
AGAATTGGAAGGTTTACTTT+GGG 0.429016 1_2:-59766838 Msa0081270:CDS
AAAACACTCTTTACCTCAAA+GGG 0.430978 1_2:+59768089 None:intergenic
CAATGAGATAGTTGAGGAAA+AGG 0.433095 1_2:-59766643 Msa0081270:CDS
TGTGTAAGAAACTCTTTCCT+TGG 0.434759 1_2:-59766212 Msa0081270:CDS
CCTATTAGAAAATGCAGGTC+TGG 0.442699 1_2:-59766129 Msa0081270:CDS
TTCGTTTAGGCATGATAGTA+TGG 0.443765 1_2:-59767639 Msa0081270:CDS
CGCAAGTGGTGCCGAAAAGT+TGG 0.445340 1_2:+59767256 None:intergenic
GCTACTTCAAATGGAATCTT+GGG 0.449531 1_2:-59766496 Msa0081270:CDS
TTCTTGGTACTCTCCTCTGA+TGG 0.453141 1_2:-59763734 Msa0081270:CDS
AATATGGCCTGACTATCATC+AGG 0.454667 1_2:+59764975 None:intergenic
TGTCATGGTCGTTTCTTTGG+AGG 0.454997 1_2:-59761863 Msa0081270:CDS
TTGTTTAATTTGATTGGTGA+TGG 0.456228 1_2:+59768220 None:intergenic
GGAAACGGCGGAGAATAATC+TGG 0.457804 1_2:-59766040 Msa0081270:CDS
AACCAGAGTGCCATGTTTGC+TGG 0.458335 1_2:-59767497 Msa0081270:CDS
AAACACAAGGGCAGCAGTAA+AGG 0.460107 1_2:+59761585 None:intergenic
AGGCTTTGCCTCAGGTCCAT+TGG 0.460532 1_2:-59767354 Msa0081270:CDS
CATCTCATGAGAAGTGTTAG+TGG 0.460965 1_2:-59767206 Msa0081270:CDS
TTCTGGTCCTGAATTAATCA+AGG 0.463926 1_2:-59766679 Msa0081270:CDS
ATCAGACATTTCCGACCGAC+TGG 0.465386 1_2:+59766740 None:intergenic
TTACCAGAGCATTTGGCGCC+GGG 0.466068 1_2:-59764923 Msa0081270:CDS
CGAGAAAACGTGTTCTTCAC+CGG 0.469877 1_2:+59767182 None:intergenic
CTTGGAGTTATGATTGGCAT+AGG 0.472134 1_2:-59766194 Msa0081270:CDS
TGCCCATGTCACATGGTTCA+TGG 0.473613 1_2:-59763678 Msa0081270:CDS
GTTTATGTCTCAATGATTCA+AGG 0.473669 1_2:-59768273 Msa0081270:five_prime_UTR
GGAACATACCTCTTCAATAC+TGG 0.475850 1_2:+59765684 None:intergenic
ACAAGTAGGTTGAAGGGGAC+AGG 0.476334 1_2:+59768296 None:intergenic
CTACGTTTAAGACGATTTCA+GGG 0.478288 1_2:-59767565 Msa0081270:CDS
TCAGGGGAAAATGGAAGCAC+TGG 0.478893 1_2:-59766354 Msa0081270:CDS
AGAACACCCTGATGATAGTC+AGG 0.480584 1_2:-59764982 Msa0081270:CDS
GTTTGTATTTGTATTTGTTG+AGG 0.480678 1_2:-59767912 Msa0081270:five_prime_UTR
TTGTTTATTGGGATATATGA+CGG 0.481266 1_2:-59766921 Msa0081270:CDS
AGTTTCTTACACAAGGACTT+TGG 0.483606 1_2:+59766222 None:intergenic
ATGGTCAAGTGAGTAATAAT+GGG 0.484486 1_2:-59767978 Msa0081270:five_prime_UTR
TCTTGGTACTCTCCTCTGAT+GGG 0.485583 1_2:-59763733 Msa0081270:CDS
GAGAAAATATTAGAAGCCTC+TGG 0.488265 1_2:-59766153 Msa0081270:CDS
GTTCAGCATGAAAAGTTGAC+TGG 0.489154 1_2:-59766549 Msa0081270:CDS
AGAAGATGGCTCTAAACATC+AGG 0.492537 1_2:-59766394 Msa0081270:CDS
TCGTCTTAAACGTAGTTTCA+GGG 0.494913 1_2:+59767573 None:intergenic
GTACAGAAGGAGTGCAACTT+AGG 0.495852 1_2:+59763786 None:intergenic
CATAAACACAAGTAGGTTGA+AGG 0.496059 1_2:+59768289 None:intergenic
CCGCGTGGAACTGGCTGCAA+AGG 0.496825 1_2:+59767419 None:intergenic
GGAAGGATTTGGAGATCATC+GGG 0.497013 1_2:-59761841 Msa0081270:CDS
TTTAATTTGATTGGTGATGG+TGG 0.497367 1_2:+59768223 None:intergenic
AAGAACAGAAGAGGCATACA+TGG 0.499922 1_2:-59766061 Msa0081270:CDS
CTTTCAACCGGTTACTCAGT+TGG 0.503085 1_2:-59767111 Msa0081270:CDS
GTCATGGTCGTTTCTTTGGA+GGG 0.503413 1_2:-59761862 Msa0081270:CDS
GAAGTGGTGGTTTCATGTCT+GGG 0.504538 1_2:-59767328 Msa0081270:CDS
ATGTCTGGTCCTTTGGAGAG+AGG 0.507990 1_2:-59767374 Msa0081270:CDS
GAACCCGGCGCCAAATGCTC+TGG 0.508085 1_2:+59764920 None:intergenic
AACATTCTCTAAGCACTCCA+TGG 0.508300 1_2:-59767159 Msa0081270:CDS
ATCAAGAGTGCTTGAATCAA+CGG 0.509625 1_2:+59767679 None:intergenic
GATGTTTATGTCATGAATCT+GGG 0.511586 1_2:-59765955 Msa0081270:CDS
GTTACCAGAGCATTTGGCGC+CGG 0.513331 1_2:-59764924 Msa0081270:CDS
TGGTCGTTTCTTTGGAGGGA+AGG 0.514079 1_2:-59761858 Msa0081270:CDS
GTAATAATGGGGTGGTTATG+GGG 0.514967 1_2:-59767966 Msa0081270:five_prime_UTR
AGCACTCCATGGGTGGAAGT+TGG 0.516622 1_2:-59767148 Msa0081270:CDS
TGTCTAGAAATCTATAAAGA+TGG 0.517327 1_2:+59766862 None:intergenic
TCGTCTACTGTAAGAGAAGA+TGG 0.519430 1_2:-59766408 Msa0081270:CDS
TCGGGTTTAAGGGAATCTAC+AGG 0.519852 1_2:+59766801 None:intergenic
GCAGGAGATTCAAACATAGT+TGG 0.520083 1_2:+59767731 None:intergenic
AGTGTAGGCCGGACATCTCT+AGG 0.520773 1_2:-59767067 Msa0081270:CDS
TTCTGCCTTGATACAGAAGC+AGG 0.522225 1_2:+59766294 None:intergenic
TTGATATTCCTCATGGAGAT+CGG 0.526663 1_2:-59761909 Msa0081270:CDS
TGGCGCCGGGTTCTTGAAGA+GGG 0.527058 1_2:-59764910 Msa0081270:intron
TCAAAACAAATTAGGACTGG+TGG 0.527155 1_2:+59761646 None:intergenic
GGGAAAGGCCGGTGAAGATA+GGG 0.528809 1_2:-59766976 Msa0081270:CDS
GGTTGTTTAGTGCCATTCAA+TGG 0.531093 1_2:-59767827 Msa0081270:CDS
CAGTGGGCTCAGGGAAAGGC+CGG 0.533471 1_2:-59766987 Msa0081270:CDS
CTTGATTCTGAAACCTTGAG+TGG 0.534406 1_2:-59767662 Msa0081270:CDS
ACCGTCCCGTGTCCTTTGAT+AGG 0.537516 1_2:-59768482 Msa0081270:five_prime_UTR
TCTGCAGTGGGCTCAGGGAA+AGG 0.538895 1_2:-59766991 Msa0081270:CDS
TTGGCGCCGGGTTCTTGAAG+AGG 0.539302 1_2:-59764911 Msa0081270:CDS
TAGAGAGTCATTAGTACGCA+TGG 0.542192 1_2:-59765839 Msa0081270:CDS
CAGAGGAGAGTACCAAGAAT+CGG 0.545943 1_2:+59763738 None:intergenic
GGCTCTAAACATCAGGATGA+AGG 0.546035 1_2:-59766387 Msa0081270:CDS
CCACAGTTCCTAGAGATGTC+CGG 0.547445 1_2:+59767059 None:intergenic
GGGAAGGATTTGGAGATCAT+CGG 0.548516 1_2:-59761842 Msa0081270:CDS
CATGTCTGGGCCGATAGAGA+AGG 0.548519 1_2:-59767315 Msa0081270:CDS
GAATTCGATGGACTAATAGC+AGG 0.549082 1_2:+59767713 None:intergenic
ACCTCAAAGGGTCAGATCAA+AGG 0.549244 1_2:+59768101 None:intergenic
ATGTCTGGGCCGATAGAGAA+GGG 0.549805 1_2:-59767314 Msa0081270:CDS
TCCTAATTCAAGCTCTGTCA+AGG 0.550425 1_2:-59765887 Msa0081270:CDS
TTTCCATGAACCATGTGACA+TGG 0.550559 1_2:+59763675 None:intergenic
CAAGAAATCACCAGCAAACA+TGG 0.551763 1_2:+59767487 None:intergenic
GAACAAAGATTGAGACAAAG+AGG 0.551861 1_2:+59768345 None:intergenic
GAACTGCTTGATATTCCTCA+TGG 0.552205 1_2:-59761916 Msa0081270:CDS
TCTTCTGGTTTACACAAGCA+GGG 0.552435 1_2:-59767605 Msa0081270:CDS
AACCGGTTACTCAGTTGGCA+TGG 0.552985 1_2:-59767106 Msa0081270:CDS
CTCCTACGACCACGCGCAAG+TGG 0.552988 1_2:+59767242 None:intergenic
AATGTTTCCACAGCAAGGAC+AGG 0.553085 1_2:-59767527 Msa0081270:CDS
TACATGAACCCTATCTTCAC+CGG 0.553678 1_2:+59766968 None:intergenic
CATAATCTGCAGTGGGCTCA+GGG 0.555002 1_2:-59766996 Msa0081270:CDS
TAAGAGCTTTCTTATTTATG+GGG 0.555187 1_2:+59761618 None:intergenic
TTTCTAGACAAAGAATTGGA+AGG 0.556075 1_2:-59766849 Msa0081270:CDS
TTGGAGTTATGATTGGCATA+GGG 0.556902 1_2:-59766193 Msa0081270:CDS
GAACACCAGTTATCTAATTG+TGG 0.557159 1_2:-59766600 Msa0081270:CDS
TGACAGAGCTTGAATTAGGA+TGG 0.557579 1_2:+59765890 None:intergenic
TGTCCTTGCTGTGGAAACAT+TGG 0.558283 1_2:+59767529 None:intergenic
ATTGAGACATAAACACAAGT+AGG 0.558791 1_2:+59768282 None:intergenic
CATGAGAAGTGTTAGTGGAC+CGG 0.559099 1_2:-59767201 Msa0081270:CDS
GAAGGAGTGCAACTTAGGTA+AGG 0.559882 1_2:+59763791 None:intergenic
TGTTTATACTCAGCTTCATA+CGG 0.562140 1_2:+59767023 None:intergenic
CAAGACAATATGCAAATATG+GGG 0.562381 1_2:+59761752 None:intergenic
CCTCTTCAATACTGGTGCTG+TGG 0.563096 1_2:+59765692 None:intergenic
GTTCCCTCAAACGAAGCAGC+AGG 0.565776 1_2:+59767461 None:intergenic
TTCTCTAAGCACTCCATGGG+TGG 0.568004 1_2:-59767155 Msa0081270:CDS
TTGCATCCAACTTCCACCCA+TGG 0.569523 1_2:+59767142 None:intergenic
AATTCAAAACAAATTAGGAC+TGG 0.569768 1_2:+59761643 None:intergenic
TAATGATTCCTCAGTTCCGA+TGG 0.572372 1_2:-59766463 Msa0081270:CDS
AGCTCTTGAAAGAACAGAAG+AGG 0.572536 1_2:-59766070 Msa0081270:CDS
TAGTACGCATGGAGCTCGAT+AGG 0.574316 1_2:-59765828 Msa0081270:CDS
AGTCGATGGTGAAGTACAGA+AGG 0.575455 1_2:+59763773 None:intergenic
TTCCATGAACCATGTGACAT+GGG 0.576524 1_2:+59763676 None:intergenic
ATATTTCAGCAATGAAGAAG+TGG 0.576694 1_2:-59763702 Msa0081270:CDS
CTGGACCTATTAGAAAATGC+AGG 0.576782 1_2:-59766134 Msa0081270:CDS
CACCACTTGCGCGTGGTCGT+AGG 0.578737 1_2:-59767244 Msa0081270:CDS
AGAAGAGGCATACATGGAAA+CGG 0.579428 1_2:-59766055 Msa0081270:CDS
TCACGATGATGTATCTGTCA+TGG 0.582123 1_2:-59761878 Msa0081270:CDS
CACTTGCGCGTGGTCGTAGG+AGG 0.582141 1_2:-59767241 Msa0081270:CDS
CACCAGCAAACATGGCACTC+TGG 0.582390 1_2:+59767495 None:intergenic
ATAAACACAAGTAGGTTGAA+GGG 0.583940 1_2:+59768290 None:intergenic
AAACCACCACTTCTATCCAA+TGG 0.584898 1_2:+59767338 None:intergenic
ATATTGAATGATCGAGTGAA+AGG 0.587589 1_2:-59764957 Msa0081270:CDS
GTGCCAATGTTTCCACAGCA+AGG 0.588563 1_2:-59767532 Msa0081270:CDS
ATGCCTAAACGAACCACTCA+AGG 0.588964 1_2:+59767649 None:intergenic
CAGAGATACTAAGTGTAGGC+CGG 0.591967 1_2:-59767078 Msa0081270:CDS
ATGAAGGCCCGTCTACATCA+GGG 0.593568 1_2:-59766371 Msa0081270:CDS
ACCGCCACCTGTCCTTGCTG+TGG 0.597591 1_2:+59767520 None:intergenic
TCCACAGCAAGGACAGGTGG+CGG 0.597778 1_2:-59767521 Msa0081270:CDS
CCACAGCACCAGTATTGAAG+AGG 0.599719 1_2:-59765692 Msa0081270:intron
GAGGCAAAGCCTCTCTCCAA+AGG 0.600093 1_2:+59767365 None:intergenic
CTATGCCAATCATAACTCCA+AGG 0.602658 1_2:+59766195 None:intergenic
CAGGGGAAAATGGAAGCACT+GGG 0.604592 1_2:-59766353 Msa0081270:CDS
TGCTCCAGAATCCAGTCGGT+CGG 0.605509 1_2:-59766751 Msa0081270:CDS
CAAGTAGGTTGAAGGGGACA+GGG 0.605511 1_2:+59768297 None:intergenic
ATTTAACAATGAGATAGTTG+AGG 0.605777 1_2:-59766649 Msa0081270:CDS
TCCTATCAAAGGACACGGGA+CGG 0.605839 1_2:+59768481 None:intergenic
TCTGCAATAAGGTATTGTGC+AGG 0.607567 1_2:+59763635 None:intergenic
GATTTATCAGTGTCATCAAG+AGG 0.609649 1_2:+59767278 None:intergenic
TTCTTTCTGAAGAACAAGGG+TGG 0.610228 1_2:-59766944 Msa0081270:CDS
AAGTGGTTGCCCATGTCACA+TGG 0.611403 1_2:-59763685 Msa0081270:CDS
GTAGTTCTTTCTGAAGAACA+AGG 0.612578 1_2:-59766948 Msa0081270:CDS
AGGAAAGAGTTTCTTACACA+AGG 0.612990 1_2:+59766215 None:intergenic
GGTCCATTGGATAGAAGTGG+TGG 0.613640 1_2:-59767341 Msa0081270:CDS
TGGGTTTGGTTCAACCAACA+AGG 0.615592 1_2:-59766334 Msa0081270:CDS
TGTTCTAGTGATGTTGATGA+AGG 0.616258 1_2:-59765983 Msa0081270:CDS
GTAAACCTCTCAGAATTCGA+TGG 0.616459 1_2:+59767701 None:intergenic
CAGCGTTGAGATCCTATCAA+AGG 0.617080 1_2:+59768470 None:intergenic
TAAACACAAGTAGGTTGAAG+GGG 0.620622 1_2:+59768291 None:intergenic
ACATTCTCTAAGCACTCCAT+GGG 0.625166 1_2:-59767158 Msa0081270:CDS
TCAGGTCCATTGGATAGAAG+TGG 0.629020 1_2:-59767344 Msa0081270:CDS
ATCCAGAACTTGCTATAATG+GGG 0.629741 1_2:-59766011 Msa0081270:CDS
CTCATGAGATGTTGTAGACG+CGG 0.630558 1_2:+59767218 None:intergenic
AGTAGAGCTTCGTTAAAAGA+CGG 0.635257 1_2:+59763848 None:intergenic
CCGACTGGATTCTGGAGCAA+CGG 0.636821 1_2:+59766755 None:intergenic
TGGGTGGAAGTTGGATGCAA+AGG 0.637203 1_2:-59767139 Msa0081270:CDS
AACACACGCATAATCTGCAG+TGG 0.639874 1_2:-59767004 Msa0081270:CDS
GGGAATTTGATGATGATGCA+TGG 0.640341 1_2:-59767997 Msa0081270:five_prime_UTR
GTTTCCACAGCAAGGACAGG+TGG 0.641159 1_2:-59767524 Msa0081270:CDS
TATTGACTCCATCGGAACTG+AGG 0.647628 1_2:+59766455 None:intergenic
TTCATGGAAAATGTTCCAGA+AGG 0.647918 1_2:-59763662 Msa0081270:CDS
TCTCTTACAGTAGACGAGCA+AGG 0.648174 1_2:+59766414 None:intergenic
ATTTGCAAAATGATATCTCG+CGG 0.648758 1_2:+59765746 None:intergenic
GGTCACTTGAAGAAAGTCGA+TGG 0.652423 1_2:+59763759 None:intergenic
TGAGATCCTATCAAAGGACA+CGG 0.653123 1_2:+59768476 None:intergenic
TAGTTCTTTCTGAAGAACAA+GGG 0.654250 1_2:-59766947 Msa0081270:CDS
GTCTGGGCCGATAGAGAAGG+GGG 0.654295 1_2:-59767312 Msa0081270:CDS
CCAGACATAAAACCATTCAA+AGG 0.654611 1_2:+59767389 None:intergenic
TCATCTAGTATTGACTCCAT+CGG 0.655797 1_2:+59766447 None:intergenic
CTACACTTAGTATCTCTGGA+AGG 0.659028 1_2:+59767083 None:intergenic
CTTCCAGAGATACTAAGTGT+AGG 0.659308 1_2:-59767082 Msa0081270:CDS
TGTCTGGGCCGATAGAGAAG+GGG 0.661460 1_2:-59767313 Msa0081270:CDS
CCGTTGCTCCAGAATCCAGT+CGG 0.662617 1_2:-59766755 Msa0081270:CDS
TACGTTTAAGACGATTTCAG+GGG 0.663223 1_2:-59767564 Msa0081270:CDS
TTAGTCCATCGAATTCTGAG+AGG 0.663493 1_2:-59767706 Msa0081270:CDS
GGAGCTCGATAGGATTTCAG+AGG 0.668955 1_2:-59765818 Msa0081270:CDS
TCAAGTGAGTAATAATGGGG+TGG 0.669097 1_2:-59767974 Msa0081270:five_prime_UTR
ACTTCTATCCAATGGACCTG+AGG 0.670903 1_2:+59767346 None:intergenic
TGAAGGCCCGTCTACATCAG+GGG 0.674161 1_2:-59766370 Msa0081270:CDS
ACACACGCATAATCTGCAGT+GGG 0.674769 1_2:-59767003 Msa0081270:CDS
CCGGACATCTCTAGGAACTG+TGG 0.684188 1_2:-59767059 Msa0081270:CDS
ATATTGGTAAAGCCCATCAG+AGG 0.686480 1_2:+59763721 None:intergenic
AGAGGCATACATGGAAACGG+CGG 0.688502 1_2:-59766052 Msa0081270:CDS
GCTCTGTCAAGGATGACATG+AGG 0.690355 1_2:-59765876 Msa0081270:CDS
GAATCTACAGATGAAACACA+AGG 0.690442 1_2:+59761572 None:intergenic
ATATGGCCTGACTATCATCA+GGG 0.691171 1_2:+59764976 None:intergenic
AAGACAATATGCAAATATGG+GGG 0.695027 1_2:+59761753 None:intergenic
ACTGACCCTCTTCAAGAACC+CGG 0.698335 1_2:+59764905 None:intergenic
GAGATCCTATCAAAGGACAC+GGG 0.711438 1_2:+59768477 None:intergenic
CCTTTGCAGCCAGTTCCACG+CGG 0.712203 1_2:-59767419 Msa0081270:CDS
TATTTACGCCGATCTCCATG+AGG 0.738087 1_2:+59761901 None:intergenic
AATCTACAGATGAAACACAA+GGG 0.746562 1_2:+59761573 None:intergenic
TGGTCAAGTGAGTAATAATG+GGG 0.749924 1_2:-59767977 Msa0081270:five_prime_UTR
TTCAAAGGTCCAGAACCGCG+TGG 0.762211 1_2:+59767404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAATAATAATAAT+TGG + chr1_2:59761673-59761692 None:intergenic 0.0%
!! CTATATTTAAAAAGAAAAAA+AGG + chr1_2:59761696-59761715 None:intergenic 10.0%
!!! AATATTCTATATCTAAAATT+TGG - chr1_2:59764501-59764520 Msa0081270:intron 10.0%
!!! TTTTTTTATATAATCATCAA+AGG + chr1_2:59765704-59765723 None:intergenic 10.0%
!!! AGTAAATTTTAATTTTAACT+TGG - chr1_2:59766571-59766590 Msa0081270:CDS 10.0%
!! AATAATAATAATTGGAGATT+TGG + chr1_2:59761665-59761684 None:intergenic 15.0%
!!! ATTTTGTGCAATAATAAAAA+TGG - chr1_2:59762217-59762236 Msa0081270:intron 15.0%
!!! TTTTGTGCAATAATAAAAAT+GGG - chr1_2:59762218-59762237 Msa0081270:intron 15.0%
!! AATTCAAAAAAGTCATTTAT+CGG - chr1_2:59763817-59763836 Msa0081270:CDS 15.0%
!! CAAAAATTAAAAAAATGTAC+AGG - chr1_2:59763842-59763861 Msa0081270:CDS 15.0%
!!! ATTTTGCAAATTAAAAATGA+GGG - chr1_2:59764356-59764375 Msa0081270:intron 15.0%
!! TTATATAAACTATAGACAAA+GGG + chr1_2:59765255-59765274 None:intergenic 15.0%
!!! TTAAAGATTTTCTTATATCT+AGG + chr1_2:59765636-59765655 None:intergenic 15.0%
!! TGTTTACATTATGAATTAAA+TGG - chr1_2:59766128-59766147 Msa0081270:CDS 15.0%
!! AAAAAAATTAGGGTTAAAAA+AGG + chr1_2:59766213-59766232 None:intergenic 15.0%
!! AAATTATGAAAAACTTGAAA+GGG + chr1_2:59766600-59766619 None:intergenic 15.0%
!! AAAATTATGAAAAACTTGAA+AGG + chr1_2:59766601-59766620 None:intergenic 15.0%
!!! TTTCTATTCTAAAATTAAGT+TGG - chr1_2:59766723-59766742 Msa0081270:CDS 15.0%
!! ACATAATATCAATACTAATA+AGG - chr1_2:59768013-59768032 Msa0081270:five_prime_UTR 15.0%
!! CATAATATCAATACTAATAA+GGG - chr1_2:59768014-59768033 Msa0081270:five_prime_UTR 15.0%
!!! AAATATTTAATTTAGGATTG+AGG + chr1_2:59768094-59768113 None:intergenic 15.0%
!! AATCCTAAATTAAATATTTG+AGG - chr1_2:59768095-59768114 Msa0081270:five_prime_UTR 15.0%
!!! AAACCTCAAATATTTAATTT+AGG + chr1_2:59768101-59768120 None:intergenic 15.0%
!! GATGAAAGAAAAAAAAAATA+AGG + chr1_2:59768281-59768300 None:intergenic 15.0%
!!! AGAAAAAAATGTGATGTTTT+TGG + chr1_2:59761722-59761741 None:intergenic 20.0%
!!! AGGTTATTGTTTAATTTGAT+TGG + chr1_2:59761879-59761898 None:intergenic 20.0%
!! ATTAAACAATAACCTTGAAA+TGG - chr1_2:59761884-59761903 Msa0081270:CDS 20.0%
!! TTAAACAATAACCTTGAAAT+GGG - chr1_2:59761885-59761904 Msa0081270:CDS 20.0%
!! TACTGTTGAAAAATTCATAT+GGG - chr1_2:59762044-59762063 Msa0081270:intron 20.0%
!!! TTTGTATTTGTATTTGTTGA+GGG - chr1_2:59762179-59762198 Msa0081270:intron 20.0%
!!! CATTTTGCAAATTAAAAATG+AGG - chr1_2:59764355-59764374 Msa0081270:intron 20.0%
!!! TGAAGATCTGAAAATTTTTA+TGG - chr1_2:59764536-59764555 Msa0081270:intron 20.0%
!! CTTATATAAACTATAGACAA+AGG + chr1_2:59765256-59765275 None:intergenic 20.0%
!! TGTCTATAGTTTATATAAGT+AGG - chr1_2:59765257-59765276 Msa0081270:intron 20.0%
!! GTCTATAGTTTATATAAGTA+GGG - chr1_2:59765258-59765277 Msa0081270:intron 20.0%
!!! TTCTTTCTAAAGAAGAAATT+AGG - chr1_2:59765551-59765570 Msa0081270:intron 20.0%
!! CTAGTGATCAAAAAAATAAA+AGG + chr1_2:59765729-59765748 None:intergenic 20.0%
!!! AAAAAAAAGCTAAACTTGTT+TGG + chr1_2:59765774-59765793 None:intergenic 20.0%
!! AAAAACAATACAAGTTTAGT+GGG + chr1_2:59766164-59766183 None:intergenic 20.0%
!! AAAAAACAATACAAGTTTAG+TGG + chr1_2:59766165-59766184 None:intergenic 20.0%
!!! TTTTAACCCTAATTTTTTTG+TGG - chr1_2:59766214-59766233 Msa0081270:CDS 20.0%
!!! GTGTTTCAAGTTAAATATAT+CGG - chr1_2:59766269-59766288 Msa0081270:CDS 20.0%
!!! TTTTCATAATTTTCTGTACT+TGG - chr1_2:59766608-59766627 Msa0081270:CDS 20.0%
!!! TTGATGATATAACTCAATTT+TGG + chr1_2:59766948-59766967 None:intergenic 20.0%
!!! TATTAGAATTCCATTTTTAC+TGG - chr1_2:59767194-59767213 Msa0081270:CDS 20.0%
!!! CTTTATCTTTTATCCTATTA+AGG + chr1_2:59767557-59767576 None:intergenic 20.0%
!! CTTAATAGGATAAAAGATAA+AGG - chr1_2:59767555-59767574 Msa0081270:CDS 20.0%
!! AAATCAGAAAGAAAAAAAGA+AGG + chr1_2:59767689-59767708 None:intergenic 20.0%
!!! TTAGTATTGATATTATGTCA+TGG + chr1_2:59768011-59768030 None:intergenic 20.0%
!!! GATTTCTAAAATCAATTTAC+TGG + chr1_2:59768383-59768402 None:intergenic 20.0%
!!! TTAAGAGCTTTCTTATTTAT+GGG + chr1_2:59768476-59768495 None:intergenic 20.0%
!!! TTGTTTAATTTGATTGGTGA+TGG + chr1_2:59761873-59761892 None:intergenic 25.0%
! CTACTGTTGAAAAATTCATA+TGG - chr1_2:59762043-59762062 Msa0081270:intron 25.0%
!! GTTTGTATTTGTATTTGTTG+AGG - chr1_2:59762178-59762197 Msa0081270:intron 25.0%
! GCAATAATAAAAATGGGTAA+CGG - chr1_2:59762224-59762243 Msa0081270:intron 25.0%
! TTGTTTATTGGGATATATGA+CGG - chr1_2:59763169-59763188 Msa0081270:intron 25.0%
! TGTCTAGAAATCTATAAAGA+TGG + chr1_2:59763231-59763250 None:intergenic 25.0%
!! TAGATTTCTAGACAAAGAAT+TGG - chr1_2:59763237-59763256 Msa0081270:intron 25.0%
! ATTTAACAATGAGATAGTTG+AGG - chr1_2:59763441-59763460 Msa0081270:intron 25.0%
! GAAAAGGTAAAAGAAGTTTA+AGG - chr1_2:59763563-59763582 Msa0081270:intron 25.0%
!! TCTTGATAACATGATTGTTA+TGG + chr1_2:59764314-59764333 None:intergenic 25.0%
! ATAGAATATTTGACCATAAC+TGG + chr1_2:59764491-59764510 None:intergenic 25.0%
!!! GTCTGATAAAATTTTAGAAC+AGG + chr1_2:59764576-59764595 None:intergenic 25.0%
!! CAGACTTGAATTTTTGTATT+TGG - chr1_2:59764591-59764610 Msa0081270:intron 25.0%
! CATAAAATAGCAGAAATCTT+TGG + chr1_2:59764906-59764925 None:intergenic 25.0%
!!! CAAAGATTTCTGCTATTTTA+TGG - chr1_2:59764904-59764923 Msa0081270:intron 25.0%
!!! CAAACATAATTTTGCTATTG+AGG - chr1_2:59765490-59765509 Msa0081270:intron 25.0%
!! TTTTAATGCCAAAATAAGTC+AGG - chr1_2:59765837-59765856 Msa0081270:CDS 25.0%
! ATCACTATTAGTAGTTGTAT+AGG - chr1_2:59766029-59766048 Msa0081270:CDS 25.0%
! TCATGATTGTATATGATTCT+TGG - chr1_2:59766062-59766081 Msa0081270:CDS 25.0%
! CATGATTGTATATGATTCTT+GGG - chr1_2:59766063-59766082 Msa0081270:CDS 25.0%
!!! TTGTTTTTTGTTGCCTAATT+TGG - chr1_2:59766176-59766195 Msa0081270:CDS 25.0%
! GCTATACCACAAAAAAATTA+GGG + chr1_2:59766223-59766242 None:intergenic 25.0%
! CTGTTACAATAATATCTGAT+GGG + chr1_2:59766533-59766552 None:intergenic 25.0%
! ACTGTTACAATAATATCTGA+TGG + chr1_2:59766534-59766553 None:intergenic 25.0%
! TCTGCTATAATTGAATTTAG+AGG - chr1_2:59766681-59766700 Msa0081270:CDS 25.0%
! CTGCTATAATTGAATTTAGA+GGG - chr1_2:59766682-59766701 Msa0081270:CDS 25.0%
!!! CTTTTAGTTAAACTGAAGTT+TGG - chr1_2:59766810-59766829 Msa0081270:CDS 25.0%
!! TAAATCTTTGGTTTCGATTT+CGG - chr1_2:59766836-59766855 Msa0081270:CDS 25.0%
!!! TAACTCAATTTTGGAAACAA+AGG + chr1_2:59766939-59766958 None:intergenic 25.0%
! GGAATTCTAATAAAGATGTT+CGG + chr1_2:59767186-59767205 None:intergenic 25.0%
!! GCTTTTAATATTCATGGAAA+GGG + chr1_2:59767268-59767287 None:intergenic 25.0%
!! AGCTTTTAATATTCATGGAA+AGG + chr1_2:59767269-59767288 None:intergenic 25.0%
!!! ACATATAGTTTGTTTTCAAC+CGG - chr1_2:59767383-59767402 Msa0081270:CDS 25.0%
! AAATCAGTTGCCAATTATTT+GGG + chr1_2:59767664-59767683 None:intergenic 25.0%
! AAAATCAGTTGCCAATTATT+TGG + chr1_2:59767665-59767684 None:intergenic 25.0%
! CTATTTGTAACAACAAACAT+AGG - chr1_2:59767931-59767950 Msa0081270:five_prime_UTR 25.0%
! AGAAACACAAGAATCATAAA+TGG + chr1_2:59767960-59767979 None:intergenic 25.0%
! TCAAGACAATATGCAAATAT+GGG + chr1_2:59768342-59768361 None:intergenic 25.0%
! ATCAAGACAATATGCAAATA+TGG + chr1_2:59768343-59768362 None:intergenic 25.0%
! TCTTGATATTGAAACAATCT+TGG - chr1_2:59768356-59768375 Msa0081270:five_prime_UTR 25.0%
! CTTGATATTGAAACAATCTT+GGG - chr1_2:59768357-59768376 Msa0081270:five_prime_UTR 25.0%
! AATTCAAAACAAATTAGGAC+TGG + chr1_2:59768450-59768469 None:intergenic 25.0%
! GGGTAAATTCAAAACAAATT+AGG + chr1_2:59768455-59768474 None:intergenic 25.0%
!! TAAGAGCTTTCTTATTTATG+GGG + chr1_2:59768475-59768494 None:intergenic 25.0%
!! GTTAAGAGCTTTCTTATTTA+TGG + chr1_2:59768477-59768496 None:intergenic 25.0%
CTCTTTCTTTCTTCTTTCTT+GGG + chr1_2:59761588-59761607 None:intergenic 30.0%
TCTCTTTCTTTCTTCTTTCT+TGG + chr1_2:59761589-59761608 None:intergenic 30.0%
! ATAAACACAAGTAGGTTGAA+GGG + chr1_2:59761803-59761822 None:intergenic 30.0%
ATTGAGACATAAACACAAGT+AGG + chr1_2:59761811-59761830 None:intergenic 30.0%
GTTTATGTCTCAATGATTCA+AGG - chr1_2:59761817-59761836 Msa0081270:three_prime_UTR 30.0%
!! TTTAATTTGATTGGTGATGG+TGG + chr1_2:59761870-59761889 None:intergenic 30.0%
AAACACAAAAACCCATTTCA+AGG + chr1_2:59761899-59761918 None:intergenic 30.0%
AAAACACTCTTTACCTCAAA+GGG + chr1_2:59762004-59762023 None:intergenic 30.0%
AAAAACACTCTTTACCTCAA+AGG + chr1_2:59762005-59762024 None:intergenic 30.0%
!!! GGTTGTTTTGTGTTTTTTTG+AGG - chr1_2:59762065-59762084 Msa0081270:intron 30.0%
!!! TTGTGTTTTTTTGAGGTTGT+TGG - chr1_2:59762072-59762091 Msa0081270:intron 30.0%
!!! TGTGTTTTTTTGAGGTTGTT+GGG - chr1_2:59762073-59762092 Msa0081270:intron 30.0%
ATGGTCAAGTGAGTAATAAT+GGG - chr1_2:59762112-59762131 Msa0081270:intron 30.0%
!!! TTGATGGGTTTTTAGCTAAT+TGG - chr1_2:59762148-59762167 Msa0081270:intron 30.0%
!!! TGATGGGTTTTTAGCTAATT+GGG - chr1_2:59762149-59762168 Msa0081270:intron 30.0%
!! ACACCATTTTTACCATTGAA+TGG + chr1_2:59762278-59762297 None:intergenic 30.0%
!! TGGTAAAAATGGTGTTGATT+TGG - chr1_2:59762283-59762302 Msa0081270:intron 30.0%
!!! TTTTTAGAGCCATTAGATGA+AGG - chr1_2:59762308-59762327 Msa0081270:intron 30.0%
! CACTGATAAATCCAACTTTT+CGG - chr1_2:59762823-59762842 Msa0081270:intron 30.0%
TGTTTATACTCAGCTTCATA+CGG + chr1_2:59763070-59763089 None:intergenic 30.0%
! TAGTTCTTTCTGAAGAACAA+GGG - chr1_2:59763143-59763162 Msa0081270:intron 30.0%
TTTCTAGACAAAGAATTGGA+AGG - chr1_2:59763241-59763260 Msa0081270:intron 30.0%
AAGAATTGGAAGGTTTACTT+TGG - chr1_2:59763251-59763270 Msa0081270:intron 30.0%
AGAATTGGAAGGTTTACTTT+GGG - chr1_2:59763252-59763271 Msa0081270:intron 30.0%
!!! TTTTAAAGTTTCAGGGACTT+CGG + chr1_2:59763311-59763330 None:intergenic 30.0%
GATTGATCCTTGATTAATTC+AGG + chr1_2:59763421-59763440 None:intergenic 30.0%
TACTTCCACAATTAGATAAC+TGG + chr1_2:59763498-59763517 None:intergenic 30.0%
!! AAATCCAGAACTTGCTATAA+TGG - chr1_2:59764077-59764096 Msa0081270:intron 30.0%
!! AATCCAGAACTTGCTATAAT+GGG - chr1_2:59764078-59764097 Msa0081270:intron 30.0%
AGATGTTTATGTCATGAATC+TGG - chr1_2:59764134-59764153 Msa0081270:intron 30.0%
GATGTTTATGTCATGAATCT+GGG - chr1_2:59764135-59764154 Msa0081270:intron 30.0%
TGATTGTTATGGTTGTGAAT+TGG + chr1_2:59764303-59764322 None:intergenic 30.0%
ATTTGCAAAATGATATCTCG+CGG + chr1_2:59764347-59764366 None:intergenic 30.0%
ATTTGATTCACCAATACACA+GGG + chr1_2:59764439-59764458 None:intergenic 30.0%
TATTTGATTCACCAATACAC+AGG + chr1_2:59764440-59764459 None:intergenic 30.0%
TTGAAGATCTAAACCAGTTA+TGG - chr1_2:59764475-59764494 Msa0081270:intron 30.0%
GATCAGAAAAGTTCAATGAT+CGG + chr1_2:59764698-59764717 None:intergenic 30.0%
CACTTAGTAATTCAGTGTAT+AGG + chr1_2:59764734-59764753 None:intergenic 30.0%
AAAAAACATTTGACACTCGA+CGG + chr1_2:59764963-59764982 None:intergenic 30.0%
TTTCACTCGATCATTCAATA+TGG + chr1_2:59765134-59765153 None:intergenic 30.0%
ATATTGAATGATCGAGTGAA+AGG - chr1_2:59765133-59765152 Msa0081270:intron 30.0%
! TTAAAAGTTACCAGAGCATT+TGG - chr1_2:59765160-59765179 Msa0081270:intron 30.0%
CATCAAACTGAATTTCAGAT+GGG + chr1_2:59765228-59765247 None:intergenic 30.0%
! CCTAAGTTTTCTGTATGTTA+TGG + chr1_2:59765307-59765326 None:intergenic 30.0%
CCATAACATACAGAAAACTT+AGG - chr1_2:59765304-59765323 Msa0081270:intron 30.0%
ACAGAAAACTTAGGAAGAAA+AGG - chr1_2:59765313-59765332 Msa0081270:intron 30.0%
! CGTTAAATTTTTCGCCAAAA+TGG - chr1_2:59765359-59765378 Msa0081270:intron 30.0%
! AAATTTTTCGCCAAAATGGT+AGG - chr1_2:59765363-59765382 Msa0081270:intron 30.0%
TAGCTAAACTATATCTCTTG+TGG - chr1_2:59765433-59765452 Msa0081270:intron 30.0%
AGCTAAACTATATCTCTTGT+GGG - chr1_2:59765434-59765453 Msa0081270:intron 30.0%
! TAACGGATGAAATAGTCAAT+GGG - chr1_2:59765464-59765483 Msa0081270:intron 30.0%
!!! TAATTTTGCTATTGAGGTCT+AGG - chr1_2:59765496-59765515 Msa0081270:intron 30.0%
CAAAAATAAGTCAGACCAAA+TGG + chr1_2:59765524-59765543 None:intergenic 30.0%
! TTCTTCTTTAGAAAGAAGAG+AGG + chr1_2:59765548-59765567 None:intergenic 30.0%
AAAAGTAGTTGAGATTTGAG+AGG - chr1_2:59765655-59765674 Msa0081270:intron 30.0%
! CTTGTTTGGTAGTTGTTAAA+AGG + chr1_2:59765760-59765779 None:intergenic 30.0%
CCAAAATAAGTCAGGTTAAA+CGG - chr1_2:59765845-59765864 Msa0081270:CDS 30.0%
CAAAATAAGTCAGGTTAAAC+GGG - chr1_2:59765846-59765865 Msa0081270:CDS 30.0%
CTTCCCTTTAAACTAGAATA+GGG + chr1_2:59765873-59765892 None:intergenic 30.0%
TTGATTATAGCGTAGATCAT+TGG - chr1_2:59765898-59765917 Msa0081270:CDS 30.0%
CTTTATACAAACAAGCTTCT+AGG - chr1_2:59765952-59765971 Msa0081270:CDS 30.0%
AGTAGTTGTATAGGTTCATA+TGG - chr1_2:59766038-59766057 Msa0081270:CDS 30.0%
! TGTATATGATTCTTGGGTTT+TGG - chr1_2:59766069-59766088 Msa0081270:CDS 30.0%
GGCTATACCACAAAAAAATT+AGG + chr1_2:59766224-59766243 None:intergenic 30.0%
CTTCTTCATTGCTGAAATAT+TGG + chr1_2:59766388-59766407 None:intergenic 30.0%
ATATTTCAGCAATGAAGAAG+TGG - chr1_2:59766388-59766407 Msa0081270:CDS 30.0%
CAATAATATCTGATGGGAAT+AGG + chr1_2:59766527-59766546 None:intergenic 30.0%
! GAAGTTTGGAACTAAATCTT+TGG - chr1_2:59766824-59766843 Msa0081270:CDS 30.0%
! AAATCTTTGGTTTCGATTTC+GGG - chr1_2:59766837-59766856 Msa0081270:CDS 30.0%
! ATGGCAGCTTTTAATATTCA+TGG + chr1_2:59767274-59767293 None:intergenic 30.0%
AATATTAAAAGCTGCCATGT+AGG - chr1_2:59767276-59767295 Msa0081270:CDS 30.0%
ATATTAAAAGCTGCCATGTA+GGG - chr1_2:59767277-59767296 Msa0081270:CDS 30.0%
AACAATAAGTCTCTTGTAGA+GGG + chr1_2:59767329-59767348 None:intergenic 30.0%
AAACAATAAGTCTCTTGTAG+AGG + chr1_2:59767330-59767349 None:intergenic 30.0%
!!! CATATAGTTTGTTTTCAACC+GGG - chr1_2:59767384-59767403 Msa0081270:CDS 30.0%
TAATTTATTACTTTGCCCTC+TGG - chr1_2:59767453-59767472 Msa0081270:CDS 30.0%
AATCAGTTGCCAATTATTTG+GGG + chr1_2:59767663-59767682 None:intergenic 30.0%
! TTTCCTTCTGTTTTCAAAAC+CGG - chr1_2:59767708-59767727 Msa0081270:CDS 30.0%
AGCACTGCTCTTATATTATT+AGG + chr1_2:59767811-59767830 None:intergenic 30.0%
GACAATGTTTATTGTTACGA+AGG + chr1_2:59767989-59768008 None:intergenic 30.0%
!! TTAACAGAGAAGCACTTAAA+AGG + chr1_2:59768303-59768322 None:intergenic 30.0%
! AGTGCTTCTCTGTTAATTTT+TGG - chr1_2:59768307-59768326 Msa0081270:five_prime_UTR 30.0%
!!! TTCTCTGTTAATTTTTGGCT+AGG - chr1_2:59768312-59768331 Msa0081270:five_prime_UTR 30.0%
AAGACAATATGCAAATATGG+GGG + chr1_2:59768340-59768359 None:intergenic 30.0%
CAAGACAATATGCAAATATG+GGG + chr1_2:59768341-59768360 None:intergenic 30.0%
GAACAAAGATTGAGACAAAG+AGG + chr1_2:59761748-59761767 None:intergenic 35.0%
! TAAACACAAGTAGGTTGAAG+GGG + chr1_2:59761802-59761821 None:intergenic 35.0%
! CATAAACACAAGTAGGTTGA+AGG + chr1_2:59761804-59761823 None:intergenic 35.0%
CATGGTCAAGTGAGTAATAA+TGG - chr1_2:59762111-59762130 Msa0081270:intron 35.0%
TGGTCAAGTGAGTAATAATG+GGG - chr1_2:59762113-59762132 Msa0081270:intron 35.0%
! AGTAATAATGGGGTGGTTAT+GGG - chr1_2:59762123-59762142 Msa0081270:intron 35.0%
!! TGTATTTGTTGAGGGTTTTG+AGG - chr1_2:59762187-59762206 Msa0081270:intron 35.0%
! GTGCCATTCAATGGTAAAAA+TGG - chr1_2:59762272-59762291 Msa0081270:intron 35.0%
TGTCCTAAACCTTCATCTAA+TGG + chr1_2:59762320-59762339 None:intergenic 35.0%
!! ATCAAGAGTGCTTGAATCAA+CGG + chr1_2:59762414-59762433 None:intergenic 35.0%
TTCGTTTAGGCATGATAGTA+TGG - chr1_2:59762451-59762470 Msa0081270:intron 35.0%
! ATGGAGCATTCTAATTCTTC+TGG - chr1_2:59762470-59762489 Msa0081270:intron 35.0%
TCGTCTTAAACGTAGTTTCA+GGG + chr1_2:59762520-59762539 None:intergenic 35.0%
ATCGTCTTAAACGTAGTTTC+AGG + chr1_2:59762521-59762540 None:intergenic 35.0%
! ACTACGTTTAAGACGATTTC+AGG - chr1_2:59762524-59762543 Msa0081270:intron 35.0%
! CTACGTTTAAGACGATTTCA+GGG - chr1_2:59762525-59762544 Msa0081270:intron 35.0%
! TACGTTTAAGACGATTTCAG+GGG - chr1_2:59762526-59762545 Msa0081270:intron 35.0%
CCAGACATAAAACCATTCAA+AGG + chr1_2:59762704-59762723 None:intergenic 35.0%
!!! CCTTTGAATGGTTTTATGTC+TGG - chr1_2:59762701-59762720 Msa0081270:intron 35.0%
GATTTATCAGTGTCATCAAG+AGG + chr1_2:59762815-59762834 None:intergenic 35.0%
! GTAGTTCTTTCTGAAGAACA+AGG - chr1_2:59763142-59763161 Msa0081270:intron 35.0%
AACAAGGGTGGTTGTTTATT+GGG - chr1_2:59763158-59763177 Msa0081270:intron 35.0%
ATCAAAAAATCAGGTGCATC+TGG + chr1_2:59763205-59763224 None:intergenic 35.0%
AGATGGCTCATCAAAAAATC+AGG + chr1_2:59763214-59763233 None:intergenic 35.0%
! TTTAAAGTTTCAGGGACTTC+GGG + chr1_2:59763310-59763329 None:intergenic 35.0%
!!! CGGTAGCTTTTAAAGTTTCA+GGG + chr1_2:59763318-59763337 None:intergenic 35.0%
!!! ACGGTAGCTTTTAAAGTTTC+AGG + chr1_2:59763319-59763338 None:intergenic 35.0%
!!! GAATGTTTTGAAGCTTGTTC+TGG - chr1_2:59763394-59763413 Msa0081270:intron 35.0%
TTCTGGTCCTGAATTAATCA+AGG - chr1_2:59763411-59763430 Msa0081270:intron 35.0%
CAATGAGATAGTTGAGGAAA+AGG - chr1_2:59763447-59763466 Msa0081270:intron 35.0%
GAACACCAGTTATCTAATTG+TGG - chr1_2:59763490-59763509 Msa0081270:intron 35.0%
CATGAAAAGTTGACTGGAAA+AGG - chr1_2:59763547-59763566 Msa0081270:intron 35.0%
GCTTTATGAGCTACTTCAAA+TGG - chr1_2:59763585-59763604 Msa0081270:intron 35.0%
AGCTACTTCAAATGGAATCT+TGG - chr1_2:59763593-59763612 Msa0081270:intron 35.0%
GCTACTTCAAATGGAATCTT+GGG - chr1_2:59763594-59763613 Msa0081270:intron 35.0%
!! TCATCTAGTATTGACTCCAT+CGG + chr1_2:59763646-59763665 None:intergenic 35.0%
! TTTTTCCTGCTTCTGTATCA+AGG - chr1_2:59763791-59763810 Msa0081270:CDS 35.0%
AGTTTCTTACACAAGGACTT+TGG + chr1_2:59763871-59763890 None:intergenic 35.0%
AGGAAAGAGTTTCTTACACA+AGG + chr1_2:59763878-59763897 None:intergenic 35.0%
TGTGTAAGAAACTCTTTCCT+TGG - chr1_2:59763878-59763897 Msa0081270:intron 35.0%
TCTTTCCTTGGAGTTATGAT+TGG - chr1_2:59763890-59763909 Msa0081270:intron 35.0%
TTGGAGTTATGATTGGCATA+GGG - chr1_2:59763897-59763916 Msa0081270:intron 35.0%
GAGAAAATATTAGAAGCCTC+TGG - chr1_2:59763937-59763956 Msa0081270:intron 35.0%
!! TAACGCAGTTTTAACAGCAA+TGG - chr1_2:59763993-59764012 Msa0081270:intron 35.0%
!! ATCCAGAACTTGCTATAATG+GGG - chr1_2:59764079-59764098 Msa0081270:intron 35.0%
! TGTTCTAGTGATGTTGATGA+AGG - chr1_2:59764107-59764126 Msa0081270:intron 35.0%
!! TTGTATTTGGTTCTGCTTCT+TGG - chr1_2:59764604-59764623 Msa0081270:intron 35.0%
!! TTGGTGATTTTGCATTCATC+AGG - chr1_2:59764831-59764850 Msa0081270:intron 35.0%
AAAAACATTTGACACTCGAC+GGG + chr1_2:59764962-59764981 None:intergenic 35.0%
TTTCAATTTCTGTTTCCTGC+AGG - chr1_2:59765066-59765085 Msa0081270:intron 35.0%
TTATTCTTGAAACTTCCTGC+AGG + chr1_2:59765084-59765103 None:intergenic 35.0%
GCATCAAACTGAATTTCAGA+TGG + chr1_2:59765229-59765248 None:intergenic 35.0%
! CCAGTGATTTGTATGATTCA+AGG + chr1_2:59765396-59765415 None:intergenic 35.0%
CCTTGAATCATACAAATCAC+TGG - chr1_2:59765393-59765412 Msa0081270:intron 35.0%
!! GTAACGGATGAAATAGTCAA+TGG - chr1_2:59765463-59765482 Msa0081270:intron 35.0%
AACGGATGAAATAGTCAATG+GGG - chr1_2:59765465-59765484 Msa0081270:intron 35.0%
! AGGAGCTTTTCAAAACAAGT+AGG - chr1_2:59765675-59765694 Msa0081270:intron 35.0%
! CCGTTTAACCTGACTTATTT+TGG + chr1_2:59765848-59765867 None:intergenic 35.0%
!! GGACCCTATTCTAGTTTAAA+GGG - chr1_2:59765867-59765886 Msa0081270:CDS 35.0%
CCTTCCCTTTAAACTAGAAT+AGG + chr1_2:59765874-59765893 None:intergenic 35.0%
!! CCTATTCTAGTTTAAAGGGA+AGG - chr1_2:59765871-59765890 Msa0081270:CDS 35.0%
!!! TGATTCTTGGGTTTTGGAAT+AGG - chr1_2:59766075-59766094 Msa0081270:CDS 35.0%
AGTAGAGCTTCGTTAAAAGA+CGG + chr1_2:59766245-59766264 None:intergenic 35.0%
TTCATGGAAAATGTTCCAGA+AGG - chr1_2:59766428-59766447 Msa0081270:CDS 35.0%
AATATCTGATGGGAATAGGA+AGG + chr1_2:59766523-59766542 None:intergenic 35.0%
!!! GTGTATGTTTAGTTTTGCAG+TGG + chr1_2:59767089-59767108 None:intergenic 35.0%
CAAAGTTAGCTGTCTTCTAT+TGG + chr1_2:59767111-59767130 None:intergenic 35.0%
TTCTGAATTTGTCACGACAT+AGG - chr1_2:59767353-59767372 Msa0081270:CDS 35.0%
TCTGAATTTGTCACGACATA+GGG - chr1_2:59767354-59767373 Msa0081270:CDS 35.0%
GTAGTAGAAACTGGTATCTA+TGG - chr1_2:59767414-59767433 Msa0081270:CDS 35.0%
GATGATGATTCTCAAAACAG+AGG - chr1_2:59767478-59767497 Msa0081270:CDS 35.0%
CTATTAAGGAACTACCATTG+TGG + chr1_2:59767543-59767562 None:intergenic 35.0%
CACAATGGTAGTTCCTTAAT+AGG - chr1_2:59767541-59767560 Msa0081270:CDS 35.0%
ATATCCACTCCCCAAATAAT+TGG - chr1_2:59767651-59767670 Msa0081270:CDS 35.0%
CAACCAGCAGTTATGTTATT+AGG + chr1_2:59767734-59767753 None:intergenic 35.0%
! ATAACATAACTGCTGGTTGT+TGG - chr1_2:59767735-59767754 Msa0081270:CDS 35.0%
! GGTTGTTGGCTAATAACATA+AGG - chr1_2:59767749-59767768 Msa0081270:CDS 35.0%
AGAGAAGAATGCATACAGTT+AGG - chr1_2:59767858-59767877 Msa0081270:exon 35.0%
! AGATTTGACCAATCAAGTTG+TGG - chr1_2:59767881-59767900 Msa0081270:five_prime_UTR 35.0%
CAAATAGTAACTACCTACTC+CGG + chr1_2:59767918-59767937 None:intergenic 35.0%
GAAAATCCATTCCTGCATAT+TGG + chr1_2:59768152-59768171 None:intergenic 35.0%
TTGATATTCCTCATGGAGAT+CGG - chr1_2:59768181-59768200 Msa0081270:five_prime_UTR 35.0%
TCAAAACAAATTAGGACTGG+TGG + chr1_2:59768447-59768466 None:intergenic 35.0%
TGAGATCCTATCAAAGGACA+CGG + chr1_2:59761617-59761636 None:intergenic 40.0%
!! GGGAATTTGATGATGATGCA+TGG - chr1_2:59762093-59762112 Msa0081270:intron 40.0%
! TCAAGTGAGTAATAATGGGG+TGG - chr1_2:59762116-59762135 Msa0081270:intron 40.0%
! GAGTAATAATGGGGTGGTTA+TGG - chr1_2:59762122-59762141 Msa0081270:intron 40.0%
! GTAATAATGGGGTGGTTATG+GGG - chr1_2:59762124-59762143 Msa0081270:intron 40.0%
!!! TGTTGAGGGTTTTGAGGTTT+AGG - chr1_2:59762193-59762212 Msa0081270:intron 40.0%
! GGTTGTTTAGTGCCATTCAA+TGG - chr1_2:59762263-59762282 Msa0081270:intron 40.0%
GAGCCATTAGATGAAGGTTT+AGG - chr1_2:59762314-59762333 Msa0081270:intron 40.0%
GCAGGAGATTCAAACATAGT+TGG + chr1_2:59762362-59762381 None:intergenic 40.0%
!! GAATTCGATGGACTAATAGC+AGG + chr1_2:59762380-59762399 None:intergenic 40.0%
TTAGTCCATCGAATTCTGAG+AGG - chr1_2:59762384-59762403 Msa0081270:intron 40.0%
GTAAACCTCTCAGAATTCGA+TGG + chr1_2:59762392-59762411 None:intergenic 40.0%
!! CTTGATTCTGAAACCTTGAG+TGG - chr1_2:59762428-59762447 Msa0081270:intron 40.0%
AAACCTTGAGTGGTTCGTTT+AGG - chr1_2:59762438-59762457 Msa0081270:intron 40.0%
!! TTCTTCTGGTTTACACAAGC+AGG - chr1_2:59762484-59762503 Msa0081270:intron 40.0%
!! TCTTCTGGTTTACACAAGCA+GGG - chr1_2:59762485-59762504 Msa0081270:intron 40.0%
CAAGAAATCACCAGCAAACA+TGG + chr1_2:59762606-59762625 None:intergenic 40.0%
! CATGTTTGCTGGTGATTTCT+TGG - chr1_2:59762604-59762623 Msa0081270:intron 40.0%
!!! TGGTTTTATGTCTGGTCCTT+TGG - chr1_2:59762709-59762728 Msa0081270:intron 40.0%
AAACCACCACTTCTATCCAA+TGG + chr1_2:59762755-59762774 None:intergenic 40.0%
!! CATCTCATGAGAAGTGTTAG+TGG - chr1_2:59762884-59762903 Msa0081270:intron 40.0%
AACATTCTCTAAGCACTCCA+TGG - chr1_2:59762931-59762950 Msa0081270:intron 40.0%
ACATTCTCTAAGCACTCCAT+GGG - chr1_2:59762932-59762951 Msa0081270:intron 40.0%
GCAAAGGTTGTTCTTTCAAC+CGG - chr1_2:59762967-59762986 Msa0081270:intron 40.0%
CTACACTTAGTATCTCTGGA+AGG + chr1_2:59763010-59763029 None:intergenic 40.0%
CTTCCAGAGATACTAAGTGT+AGG - chr1_2:59763008-59763027 Msa0081270:intron 40.0%
TACATGAACCCTATCTTCAC+CGG + chr1_2:59763125-59763144 None:intergenic 40.0%
! TTCTTTCTGAAGAACAAGGG+TGG - chr1_2:59763146-59763165 Msa0081270:intron 40.0%
GAACAAGGGTGGTTGTTTAT+TGG - chr1_2:59763157-59763176 Msa0081270:intron 40.0%
!! GGGATATATGACGGTTTTAG+TGG - chr1_2:59763178-59763197 Msa0081270:intron 40.0%
GTTCAGCATGAAAAGTTGAC+TGG - chr1_2:59763541-59763560 Msa0081270:intron 40.0%
TAATGATTCCTCAGTTCCGA+TGG - chr1_2:59763627-59763646 Msa0081270:CDS 40.0%
TCGTCTACTGTAAGAGAAGA+TGG - chr1_2:59763682-59763701 Msa0081270:CDS 40.0%
!! AGAAGATGGCTCTAAACATC+AGG - chr1_2:59763696-59763715 Msa0081270:CDS 40.0%
CTATGCCAATCATAACTCCA+AGG + chr1_2:59763898-59763917 None:intergenic 40.0%
CTTGGAGTTATGATTGGCAT+AGG - chr1_2:59763896-59763915 Msa0081270:intron 40.0%
! GCATTTTCTAATAGGTCCAG+AGG + chr1_2:59763956-59763975 None:intergenic 40.0%
CTGGACCTATTAGAAAATGC+AGG - chr1_2:59763956-59763975 Msa0081270:intron 40.0%
! CCAGACCTGCATTTTCTAAT+AGG + chr1_2:59763964-59763983 None:intergenic 40.0%
CCTATTAGAAAATGCAGGTC+TGG - chr1_2:59763961-59763980 Msa0081270:intron 40.0%
AGCTCTTGAAAGAACAGAAG+AGG - chr1_2:59764020-59764039 Msa0081270:intron 40.0%
! AAGAACAGAAGAGGCATACA+TGG - chr1_2:59764029-59764048 Msa0081270:intron 40.0%
! AGAAGAGGCATACATGGAAA+CGG - chr1_2:59764035-59764054 Msa0081270:intron 40.0%
TGACAGAGCTTGAATTAGGA+TGG + chr1_2:59764203-59764222 None:intergenic 40.0%
TCCTAATTCAAGCTCTGTCA+AGG - chr1_2:59764203-59764222 Msa0081270:intron 40.0%
TCCTTGACAGAGCTTGAATT+AGG + chr1_2:59764207-59764226 None:intergenic 40.0%
TAGAGAGTCATTAGTACGCA+TGG - chr1_2:59764251-59764270 Msa0081270:intron 40.0%
GGAACATACCTCTTCAATAC+TGG + chr1_2:59764409-59764428 None:intergenic 40.0%
TGCACAACAGAATGATCTGT+TGG - chr1_2:59764812-59764831 Msa0081270:intron 40.0%
ATATGGCCTGACTATCATCA+GGG + chr1_2:59765117-59765136 None:intergenic 40.0%
AATATGGCCTGACTATCATC+AGG + chr1_2:59765118-59765137 None:intergenic 40.0%
ATCATACAAATCACTGGTCC+TGG - chr1_2:59765399-59765418 Msa0081270:intron 40.0%
TCATACAAATCACTGGTCCT+GGG - chr1_2:59765400-59765419 Msa0081270:intron 40.0%
!! GGGACCCTATTCTAGTTTAA+AGG - chr1_2:59765866-59765885 Msa0081270:CDS 40.0%
AGCGTAGATCATTGGATTTG+CGG - chr1_2:59765906-59765925 Msa0081270:CDS 40.0%
TGCCTAATTTGGAAACACTG+AGG - chr1_2:59766187-59766206 Msa0081270:CDS 40.0%
! TTTTAACGAAGCTCTACTCG+AGG - chr1_2:59766247-59766266 Msa0081270:CDS 40.0%
! TTCTTCAAGTGACCGATTCT+TGG - chr1_2:59766340-59766359 Msa0081270:CDS 40.0%
ATATTGGTAAAGCCCATCAG+AGG + chr1_2:59766372-59766391 None:intergenic 40.0%
TTCCATGAACCATGTGACAT+GGG + chr1_2:59766417-59766436 None:intergenic 40.0%
TTTCCATGAACCATGTGACA+TGG + chr1_2:59766418-59766437 None:intergenic 40.0%
!! TCTGCAATAAGGTATTGTGC+AGG + chr1_2:59766458-59766477 None:intergenic 40.0%
AGAAGAGAAGCTCTGCAATA+AGG + chr1_2:59766469-59766488 None:intergenic 40.0%
TTCTGCGCTGCTAAAAAGAA+TGG - chr1_2:59766485-59766504 Msa0081270:CDS 40.0%
! AACCGATTCTAACCTGAAGT+TGG - chr1_2:59766904-59766923 Msa0081270:CDS 40.0%
! ACCGATTCTAACCTGAAGTT+GGG - chr1_2:59766905-59766924 Msa0081270:CDS 40.0%
! TCCCAACTTCAGGTTAGAAT+CGG + chr1_2:59766909-59766928 None:intergenic 40.0%
AATTACTGGATGACCCTACA+TGG + chr1_2:59767293-59767312 None:intergenic 40.0%
TAAGTCTCTTGTAGAGGGAT+TGG + chr1_2:59767324-59767343 None:intergenic 40.0%
!! GTTTGTTTTCAACCGGGTTA+TGG - chr1_2:59767390-59767409 Msa0081270:CDS 40.0%
GTTTCTACTACACCATAACC+CGG + chr1_2:59767405-59767424 None:intergenic 40.0%
GGTTATGGTGTAGTAGAAAC+TGG - chr1_2:59767405-59767424 Msa0081270:CDS 40.0%
GAGAATCATCATCATCCAGA+GGG + chr1_2:59767471-59767490 None:intergenic 40.0%
TGAGAATCATCATCATCCAG+AGG + chr1_2:59767472-59767491 None:intergenic 40.0%
!! GACTCTTGAACTTCTAGGAT+AGG + chr1_2:59767584-59767603 None:intergenic 40.0%
TCCTAGAAGTTCAAGAGTCT+TGG - chr1_2:59767585-59767604 Msa0081270:CDS 40.0%
ACCAAGACTCTTGAACTTCT+AGG + chr1_2:59767589-59767608 None:intergenic 40.0%
! GAGTGGATATTGATTGAGAG+AGG + chr1_2:59767641-59767660 None:intergenic 40.0%
CAGCAGTTATGTTATTAGGC+CGG + chr1_2:59767730-59767749 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTT+AGG - chr1_2:59767773-59767792 Msa0081270:CDS 40.0%
ATCCATTCCTGCATATTGGA+GGG + chr1_2:59768148-59768167 None:intergenic 40.0%
AATCCATTCCTGCATATTGG+AGG + chr1_2:59768149-59768168 None:intergenic 40.0%
GAACTGCTTGATATTCCTCA+TGG - chr1_2:59768174-59768193 Msa0081270:five_prime_UTR 40.0%
TCACGATGATGTATCTGTCA+TGG - chr1_2:59768212-59768231 Msa0081270:five_prime_UTR 40.0%
ATCTGTCATGGTCGTTTCTT+TGG - chr1_2:59768224-59768243 Msa0081270:five_prime_UTR 40.0%
! TTTCTTTGGAGGGAAGGATT+TGG - chr1_2:59768238-59768257 Msa0081270:five_prime_UTR 40.0%
! GGCAGCAGTAAAGGATTTTA+GGG + chr1_2:59768499-59768518 None:intergenic 40.0%
GAGATCCTATCAAAGGACAC+GGG + chr1_2:59761616-59761635 None:intergenic 45.0%
! CAGCGTTGAGATCCTATCAA+AGG + chr1_2:59761623-59761642 None:intergenic 45.0%
TCCTTTGATCTGACCCTTTG+AGG - chr1_2:59761988-59762007 Msa0081270:intron 45.0%
ACCTCAAAGGGTCAGATCAA+AGG + chr1_2:59761992-59762011 None:intergenic 45.0%
ATGCCTAAACGAACCACTCA+AGG + chr1_2:59762444-59762463 None:intergenic 45.0%
! TGTCCTTGCTGTGGAAACAT+TGG + chr1_2:59762564-59762583 None:intergenic 45.0%
AATGTTTCCACAGCAAGGAC+AGG - chr1_2:59762563-59762582 Msa0081270:intron 45.0%
ACTTCTATCCAATGGACCTG+AGG + chr1_2:59762747-59762766 None:intergenic 45.0%
TCAGGTCCATTGGATAGAAG+TGG - chr1_2:59762746-59762765 Msa0081270:intron 45.0%
AGAAGTGGTGGTTTCATGTC+TGG - chr1_2:59762761-59762780 Msa0081270:intron 45.0%
GAAGTGGTGGTTTCATGTCT+GGG - chr1_2:59762762-59762781 Msa0081270:intron 45.0%
GACATAACCCCCTTCTCTAT+CGG + chr1_2:59762788-59762807 None:intergenic 45.0%
ATAGAGAAGGGGGTTATGTC+AGG - chr1_2:59762788-59762807 Msa0081270:intron 45.0%
CTCATGAGATGTTGTAGACG+CGG + chr1_2:59762875-59762894 None:intergenic 45.0%
!! CATGAGAAGTGTTAGTGGAC+CGG - chr1_2:59762889-59762908 Msa0081270:intron 45.0%
CGAGAAAACGTGTTCTTCAC+CGG + chr1_2:59762911-59762930 None:intergenic 45.0%
CTTTCAACCGGTTACTCAGT+TGG - chr1_2:59762979-59762998 Msa0081270:intron 45.0%
CAGAGATACTAAGTGTAGGC+CGG - chr1_2:59763012-59763031 Msa0081270:intron 45.0%
AACACACGCATAATCTGCAG+TGG - chr1_2:59763086-59763105 Msa0081270:intron 45.0%
ACACACGCATAATCTGCAGT+GGG - chr1_2:59763087-59763106 Msa0081270:intron 45.0%
TCGGGTTTAAGGGAATCTAC+AGG + chr1_2:59763292-59763311 None:intergenic 45.0%
! TTCAGGGACTTCGGGTTTAA+GGG + chr1_2:59763302-59763321 None:intergenic 45.0%
! TTTCAGGGACTTCGGGTTTA+AGG + chr1_2:59763303-59763322 None:intergenic 45.0%
!! TATTGACTCCATCGGAACTG+AGG + chr1_2:59763638-59763657 None:intergenic 45.0%
TCTCTTACAGTAGACGAGCA+AGG + chr1_2:59763679-59763698 None:intergenic 45.0%
!! GGCTCTAAACATCAGGATGA+AGG - chr1_2:59763703-59763722 Msa0081270:CDS 45.0%
! CATTTTCCCCTGATGTAGAC+GGG + chr1_2:59763729-59763748 None:intergenic 45.0%
! CCATTTTCCCCTGATGTAGA+CGG + chr1_2:59763730-59763749 None:intergenic 45.0%
!! GAAAATGGAAGCACTGGGTT+TGG - chr1_2:59763742-59763761 Msa0081270:CDS 45.0%
! TGGGTTTGGTTCAACCAACA+AGG - chr1_2:59763756-59763775 Msa0081270:CDS 45.0%
TTCTGCCTTGATACAGAAGC+AGG + chr1_2:59763799-59763818 None:intergenic 45.0%
GACCCCATTATAGCAAGTTC+TGG + chr1_2:59764084-59764103 None:intergenic 45.0%
! GGGAGATAGTCGTGTGATTT+TGG - chr1_2:59764155-59764174 Msa0081270:intron 45.0%
TGATTCACCAATACACAGGG+AGG + chr1_2:59764436-59764455 None:intergenic 45.0%
AGAACACCCTGATGATAGTC+AGG - chr1_2:59765108-59765127 Msa0081270:intron 45.0%
! AGGTGCACTTCCTACCATTT+TGG + chr1_2:59765376-59765395 None:intergenic 45.0%
TTAGCTATCACACATGACCC+AGG + chr1_2:59765420-59765439 None:intergenic 45.0%
CTCTTGTGGGTGTGTAGTAA+CGG - chr1_2:59765447-59765466 Msa0081270:intron 45.0%
ATTGAGGTCTAGGCTCCATT+TGG - chr1_2:59765506-59765525 Msa0081270:intron 45.0%
GCGTAGATCATTGGATTTGC+GGG - chr1_2:59765907-59765926 Msa0081270:CDS 45.0%
GGCCTCAGTGTTTCCAAATT+AGG + chr1_2:59766192-59766211 None:intergenic 45.0%
! GAAGGAGTGCAACTTAGGTA+AGG + chr1_2:59766302-59766321 None:intergenic 45.0%
! GTACAGAAGGAGTGCAACTT+AGG + chr1_2:59766307-59766326 None:intergenic 45.0%
AGTCGATGGTGAAGTACAGA+AGG + chr1_2:59766320-59766339 None:intergenic 45.0%
GGTCACTTGAAGAAAGTCGA+TGG + chr1_2:59766334-59766353 None:intergenic 45.0%
!! CAGAGGAGAGTACCAAGAAT+CGG + chr1_2:59766355-59766374 None:intergenic 45.0%
TTCTTGGTACTCTCCTCTGA+TGG - chr1_2:59766356-59766375 Msa0081270:CDS 45.0%
TCTTGGTACTCTCCTCTGAT+GGG - chr1_2:59766357-59766376 Msa0081270:CDS 45.0%
! TCTTTGGTTTCGATTTCGGG+AGG - chr1_2:59766840-59766859 Msa0081270:CDS 45.0%
! CTTTGGTTTCGATTTCGGGA+GGG - chr1_2:59766841-59766860 Msa0081270:CDS 45.0%
! TTTGGTTTCGATTTCGGGAG+GGG - chr1_2:59766842-59766861 Msa0081270:CDS 45.0%
! CTTCAGGTTAGAATCGGTTC+TGG + chr1_2:59766903-59766922 None:intergenic 45.0%
!! AGGCTCTAAATCCCAACTTC+AGG + chr1_2:59766919-59766938 None:intergenic 45.0%
CACGCACACACCAGTAAAAA+TGG + chr1_2:59767207-59767226 None:intergenic 45.0%
GATTGGACGGGATGAATTAC+TGG + chr1_2:59767307-59767326 None:intergenic 45.0%
TCTCTTGTAGAGGGATTGGA+CGG + chr1_2:59767320-59767339 None:intergenic 45.0%
! AGCACTTAGAGCATCCACAA+TGG - chr1_2:59767526-59767545 Msa0081270:CDS 45.0%
TCTTCCCCCCAAGAATTAGA+GGG - chr1_2:59767610-59767629 Msa0081270:CDS 45.0%
GTTGCCAATTATTTGGGGAG+TGG + chr1_2:59767658-59767677 None:intergenic 45.0%
!!! AGGCCGGTTTTGAAAACAGA+AGG + chr1_2:59767714-59767733 None:intergenic 45.0%
CGGCCTAATAACATAACTGC+TGG - chr1_2:59767728-59767747 Msa0081270:CDS 45.0%
AGGCAGCAGTAACTACCTAA+GGG + chr1_2:59767791-59767810 None:intergenic 45.0%
TAGGCAGCAGTAACTACCTA+AGG + chr1_2:59767792-59767811 None:intergenic 45.0%
ATGGTCAGCCACAACTTGAT+TGG + chr1_2:59767892-59767911 None:intergenic 45.0%
TAACTACCTACTCCGGTGTA+TGG + chr1_2:59767911-59767930 None:intergenic 45.0%
TGACTTTCCCTCCAATATGC+AGG - chr1_2:59768138-59768157 Msa0081270:five_prime_UTR 45.0%
TTCCCTCCAATATGCAGGAA+TGG - chr1_2:59768143-59768162 Msa0081270:five_prime_UTR 45.0%
TATTTACGCCGATCTCCATG+AGG + chr1_2:59768192-59768211 None:intergenic 45.0%
TGTCATGGTCGTTTCTTTGG+AGG - chr1_2:59768227-59768246 Msa0081270:five_prime_UTR 45.0%
GTCATGGTCGTTTCTTTGGA+GGG - chr1_2:59768228-59768247 Msa0081270:five_prime_UTR 45.0%
GGGAAGGATTTGGAGATCAT+CGG - chr1_2:59768248-59768267 Msa0081270:five_prime_UTR 45.0%
GGAAGGATTTGGAGATCATC+GGG - chr1_2:59768249-59768268 Msa0081270:five_prime_UTR 45.0%
! GGGCAGCAGTAAAGGATTTT+AGG + chr1_2:59768500-59768519 None:intergenic 45.0%
AAACACAAGGGCAGCAGTAA+AGG + chr1_2:59768508-59768527 None:intergenic 45.0%
TCCTATCAAAGGACACGGGA+CGG + chr1_2:59761612-59761631 None:intergenic 50.0%
! CAAGTAGGTTGAAGGGGACA+GGG + chr1_2:59761796-59761815 None:intergenic 50.0%
! ACAAGTAGGTTGAAGGGGAC+AGG + chr1_2:59761797-59761816 None:intergenic 50.0%
GGGTGGTTATGGGGTTTGAT+GGG - chr1_2:59762133-59762152 Msa0081270:intron 50.0%
AACGGCACTTCTCGTGTTGT+TGG - chr1_2:59762242-59762261 Msa0081270:intron 50.0%
GTGCCAATGTTTCCACAGCA+AGG - chr1_2:59762558-59762577 Msa0081270:intron 50.0%
! AACCAGAGTGCCATGTTTGC+TGG - chr1_2:59762593-59762612 Msa0081270:intron 50.0%
! GAACCTGCTGCTTCGTTTGA+GGG - chr1_2:59762626-59762645 Msa0081270:intron 50.0%
! ATGTCTGGTCCTTTGGAGAG+AGG - chr1_2:59762716-59762735 Msa0081270:intron 50.0%
GGTCCATTGGATAGAAGTGG+TGG - chr1_2:59762749-59762768 Msa0081270:intron 50.0%
ATGTCTGGGCCGATAGAGAA+GGG - chr1_2:59762776-59762795 Msa0081270:intron 50.0%
TTCTCTAAGCACTCCATGGG+TGG - chr1_2:59762935-59762954 Msa0081270:intron 50.0%
TTGCATCCAACTTCCACCCA+TGG + chr1_2:59762951-59762970 None:intergenic 50.0%
TGGGTGGAAGTTGGATGCAA+AGG - chr1_2:59762951-59762970 Msa0081270:intron 50.0%
AACCGGTTACTCAGTTGGCA+TGG - chr1_2:59762984-59763003 Msa0081270:intron 50.0%
CGGCCTACACTTAGTATCTC+TGG + chr1_2:59763014-59763033 None:intergenic 50.0%
CCACAGTTCCTAGAGATGTC+CGG + chr1_2:59763034-59763053 None:intergenic 50.0%
! CATAATCTGCAGTGGGCTCA+GGG - chr1_2:59763094-59763113 Msa0081270:intron 50.0%
ATTTCCGACCGACTGGATTC+TGG + chr1_2:59763346-59763365 None:intergenic 50.0%
ATCAGACATTTCCGACCGAC+TGG + chr1_2:59763353-59763372 None:intergenic 50.0%
ATGAAGGCCCGTCTACATCA+GGG - chr1_2:59763719-59763738 Msa0081270:CDS 50.0%
CCGTCTACATCAGGGGAAAA+TGG - chr1_2:59763727-59763746 Msa0081270:CDS 50.0%
! TCAGGGGAAAATGGAAGCAC+TGG - chr1_2:59763736-59763755 Msa0081270:CDS 50.0%
!! CAGGGGAAAATGGAAGCACT+GGG - chr1_2:59763737-59763756 Msa0081270:CDS 50.0%
AACAGCTTCGTGCTCCTTGT+TGG + chr1_2:59763773-59763792 None:intergenic 50.0%
! AGAGGCATACATGGAAACGG+CGG - chr1_2:59764038-59764057 Msa0081270:intron 50.0%
GGAAACGGCGGAGAATAATC+TGG - chr1_2:59764050-59764069 Msa0081270:intron 50.0%
GCTCTGTCAAGGATGACATG+AGG - chr1_2:59764214-59764233 Msa0081270:intron 50.0%
TAGTACGCATGGAGCTCGAT+AGG - chr1_2:59764262-59764281 Msa0081270:intron 50.0%
GGAGCTCGATAGGATTTCAG+AGG - chr1_2:59764272-59764291 Msa0081270:intron 50.0%
! CCTCTTCAATACTGGTGCTG+TGG + chr1_2:59764401-59764420 None:intergenic 50.0%
! CCACAGCACCAGTATTGAAG+AGG - chr1_2:59764398-59764417 Msa0081270:intron 50.0%
TCACCAATACACAGGGAGGA+GGG + chr1_2:59764432-59764451 None:intergenic 50.0%
TTCACCAATACACAGGGAGG+AGG + chr1_2:59764433-59764452 None:intergenic 50.0%
ACTGACCCTCTTCAAGAACC+CGG + chr1_2:59765188-59765207 None:intergenic 50.0%
AAGTGGTTGCCCATGTCACA+TGG - chr1_2:59766405-59766424 Msa0081270:CDS 50.0%
TGCCCATGTCACATGGTTCA+TGG - chr1_2:59766412-59766431 Msa0081270:CDS 50.0%
TATTGTGCAGGATCGCCTTC+TGG + chr1_2:59766446-59766465 None:intergenic 50.0%
! CAGGTTAGAATCGGTTCTGG+AGG + chr1_2:59766900-59766919 None:intergenic 50.0%
CTCTTGTAGAGGGATTGGAC+GGG + chr1_2:59767319-59767338 None:intergenic 50.0%
CTCTTCCCCCCAAGAATTAG+AGG - chr1_2:59767609-59767628 Msa0081270:CDS 50.0%
CAAGCCCTCTAATTCTTGGG+GGG + chr1_2:59767617-59767636 None:intergenic 50.0%
CCAAGCCCTCTAATTCTTGG+GGG + chr1_2:59767618-59767637 None:intergenic 50.0%
GCCAAGCCCTCTAATTCTTG+GGG + chr1_2:59767619-59767638 None:intergenic 50.0%
GGCCAAGCCCTCTAATTCTT+GGG + chr1_2:59767620-59767639 None:intergenic 50.0%
AGGCCAAGCCCTCTAATTCT+TGG + chr1_2:59767621-59767640 None:intergenic 50.0%
AGTTGTGGCTGACCATACAC+CGG - chr1_2:59767896-59767915 Msa0081270:five_prime_UTR 50.0%
! TGGTCGTTTCTTTGGAGGGA+AGG - chr1_2:59768232-59768251 Msa0081270:five_prime_UTR 50.0%
ACCGTCCCGTGTCCTTTGAT+AGG - chr1_2:59761608-59761627 Msa0081270:three_prime_UTR 55.0%
GGGGTGGTTATGGGGTTTGA+TGG - chr1_2:59762132-59762151 Msa0081270:intron 55.0%
GTTTCCACAGCAAGGACAGG+TGG - chr1_2:59762566-59762585 Msa0081270:intron 55.0%
CACCAGCAAACATGGCACTC+TGG + chr1_2:59762598-59762617 None:intergenic 55.0%
! GGAACCTGCTGCTTCGTTTG+AGG - chr1_2:59762625-59762644 Msa0081270:intron 55.0%
GTTCCCTCAAACGAAGCAGC+AGG + chr1_2:59762632-59762651 None:intergenic 55.0%
TTCAAAGGTCCAGAACCGCG+TGG + chr1_2:59762689-59762708 None:intergenic 55.0%
!! CGCGGTTCTGGACCTTTGAA+TGG - chr1_2:59762689-59762708 Msa0081270:intron 55.0%
GAGGCAAAGCCTCTCTCCAA+AGG + chr1_2:59762728-59762747 None:intergenic 55.0%
TTGGAGAGAGGCTTTGCCTC+AGG - chr1_2:59762728-59762747 Msa0081270:intron 55.0%
AGGCTTTGCCTCAGGTCCAT+TGG - chr1_2:59762736-59762755 Msa0081270:intron 55.0%
CATGTCTGGGCCGATAGAGA+AGG - chr1_2:59762775-59762794 Msa0081270:intron 55.0%
TGTCTGGGCCGATAGAGAAG+GGG - chr1_2:59762777-59762796 Msa0081270:intron 55.0%
! CGCAAGTGGTGCCGAAAAGT+TGG + chr1_2:59762837-59762856 None:intergenic 55.0%
AGCACTCCATGGGTGGAAGT+TGG - chr1_2:59762942-59762961 Msa0081270:intron 55.0%
GGCCATGCCAACTGAGTAAC+CGG + chr1_2:59762989-59763008 None:intergenic 55.0%
AGTGTAGGCCGGACATCTCT+AGG - chr1_2:59763023-59763042 Msa0081270:intron 55.0%
! CCGGACATCTCTAGGAACTG+TGG - chr1_2:59763031-59763050 Msa0081270:intron 55.0%
! GCATAATCTGCAGTGGGCTC+AGG - chr1_2:59763093-59763112 Msa0081270:intron 55.0%
AGGGAAAGGCCGGTGAAGAT+AGG - chr1_2:59763113-59763132 Msa0081270:intron 55.0%
GGGAAAGGCCGGTGAAGATA+GGG - chr1_2:59763114-59763133 Msa0081270:intron 55.0%
!! CCGACTGGATTCTGGAGCAA+CGG + chr1_2:59763338-59763357 None:intergenic 55.0%
CCGTTGCTCCAGAATCCAGT+CGG - chr1_2:59763335-59763354 Msa0081270:intron 55.0%
TGCTCCAGAATCCAGTCGGT+CGG - chr1_2:59763339-59763358 Msa0081270:intron 55.0%
GATGAAGGCCCGTCTACATC+AGG - chr1_2:59763718-59763737 Msa0081270:CDS 55.0%
TGAAGGCCCGTCTACATCAG+GGG - chr1_2:59763720-59763739 Msa0081270:CDS 55.0%
ACCAATACACAGGGAGGAGG+GGG + chr1_2:59764430-59764449 None:intergenic 55.0%
CACCAATACACAGGGAGGAG+GGG + chr1_2:59764431-59764450 None:intergenic 55.0%
! GTTACCAGAGCATTTGGCGC+CGG - chr1_2:59765166-59765185 Msa0081270:intron 55.0%
! TTACCAGAGCATTTGGCGCC+GGG - chr1_2:59765167-59765186 Msa0081270:intron 55.0%
ACTGGTGTGTGCGTGCAATC+TGG - chr1_2:59767212-59767231 Msa0081270:CDS 55.0%
CCCCCAAGAATTAGAGGGCT+TGG - chr1_2:59767615-59767634 Msa0081270:CDS 55.0%
TCCACAGCAAGGACAGGTGG+CGG - chr1_2:59762569-59762588 Msa0081270:intron 60.0%
CCTTTGCAGCCAGTTCCACG+CGG - chr1_2:59762671-59762690 Msa0081270:intron 60.0%
GTCTGGGCCGATAGAGAAGG+GGG - chr1_2:59762778-59762797 Msa0081270:intron 60.0%
! TTTTCGGCACCACTTGCGCG+TGG - chr1_2:59762839-59762858 Msa0081270:intron 60.0%
! TCTGCAGTGGGCTCAGGGAA+AGG - chr1_2:59763099-59763118 Msa0081270:intron 60.0%
TCCCCCTCCTCCCTGTGTAT+TGG - chr1_2:59764426-59764445 Msa0081270:intron 60.0%
! TTGGCGCCGGGTTCTTGAAG+AGG - chr1_2:59765179-59765198 Msa0081270:intron 60.0%
! TGGCGCCGGGTTCTTGAAGA+GGG - chr1_2:59765180-59765199 Msa0081270:intron 60.0%
GGCTGACCATACACCGGAGT+AGG - chr1_2:59767902-59767921 Msa0081270:five_prime_UTR 60.0%
ACCGCCACCTGTCCTTGCTG+TGG + chr1_2:59762573-59762592 None:intergenic 65.0%
CCGCGTGGAACTGGCTGCAA+AGG + chr1_2:59762674-59762693 None:intergenic 65.0%
CAGCCAGTTCCACGCGGTTC+TGG - chr1_2:59762677-59762696 Msa0081270:intron 65.0%
GGTCCAGAACCGCGTGGAAC+TGG + chr1_2:59762683-59762702 None:intergenic 65.0%
CACCACTTGCGCGTGGTCGT+AGG - chr1_2:59762846-59762865 Msa0081270:intron 65.0%
CTCCTACGACCACGCGCAAG+TGG + chr1_2:59762851-59762870 None:intergenic 65.0%
CACTTGCGCGTGGTCGTAGG+AGG - chr1_2:59762849-59762868 Msa0081270:intron 65.0%
! CAGTGGGCTCAGGGAAAGGC+CGG - chr1_2:59763103-59763122 Msa0081270:intron 65.0%
GAACCCGGCGCCAAATGCTC+TGG + chr1_2:59765173-59765192 None:intergenic 65.0%
TGTGAGTATGCGCGCGCGTG+TGG + chr1_2:59767152-59767171 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59761584 59768528 59761584 ID=Msa0081270;Name=Msa0081270
chr1_2 mRNA 59761584 59768528 59761584 ID=Msa0081270-mRNA-1;Parent=Msa0081270;Name=Msa0081270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=652|1|1|1|1|1|4|253|892
chr1_2 exon 59761584 59761952 59761584 ID=Msa0081270-mRNA-1:exon:19401;Parent=Msa0081270-mRNA-1
chr1_2 exon 59763606 59763870 59763606 ID=Msa0081270-mRNA-1:exon:19400;Parent=Msa0081270-mRNA-1
chr1_2 exon 59764911 59765024 59764911 ID=Msa0081270-mRNA-1:exon:19399;Parent=Msa0081270-mRNA-1
chr1_2 exon 59765693 59768528 59765693 ID=Msa0081270-mRNA-1:exon:19398;Parent=Msa0081270-mRNA-1
chr1_2 five_prime_UTR 59767877 59768528 59767877 ID=Msa0081270-mRNA-1:five_prime_utr;Parent=Msa0081270-mRNA-1
chr1_2 CDS 59765693 59767876 59765693 ID=Msa0081270-mRNA-1:cds;Parent=Msa0081270-mRNA-1
chr1_2 CDS 59764911 59765024 59764911 ID=Msa0081270-mRNA-1:cds;Parent=Msa0081270-mRNA-1
chr1_2 CDS 59763606 59763870 59763606 ID=Msa0081270-mRNA-1:cds;Parent=Msa0081270-mRNA-1
chr1_2 CDS 59761837 59761952 59761837 ID=Msa0081270-mRNA-1:cds;Parent=Msa0081270-mRNA-1
chr1_2 three_prime_UTR 59761584 59761836 59761584 ID=Msa0081270-mRNA-1:three_prime_utr;Parent=Msa0081270-mRNA-1
Gene Sequence

>Msa0081270

ATGGGTAACGGCACTTCTCGTGTTGTTGGTTGTTTAGTGCCATTCAATGGTAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGACATTCTTTTTGTTATGTGAGACCAACTATGTTTGAATCTCCTGCTATTAGTCCATCGAATTCTGAGAGGTTTACCGTTGATTCAAGCACTCTTGATTCTGAAACCTTGAGTGGTTCGTTTAGGCATGATAGTATGGAGCATTCTAATTCTTCTGGTTTACACAAGCAGGGTAAGAATTTCCCTGAAACTACGTTTAAGACGATTTCAGGGGCTTCTGTTAGTGCCAATGTTTCCACAGCAAGGACAGGTGGCGGTAACCAGAGTGCCATGTTTGCTGGTGATTTCTTGGAACCTGCTGCTTCGTTTGAGGGAACTGCTTCGTTTGCTGCAATTCCTTTGCAGCCAGTTCCACGCGGTTCTGGACCTTTGAATGGTTTTATGTCTGGTCCTTTGGAGAGAGGCTTTGCCTCAGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGGGTTATGTCAGGTCCTCTTGATGACACTGATAAATCCAACTTTTCGGCACCACTTGCGCGTGGTCGTAGGAGGCCGCGTCTACAACATCTCATGAGAAGTGTTAGTGGACCGGTGAAGAACACGTTTTCTCGAACATTCTCTAAGCACTCCATGGGTGGAAGTTGGATGCAAAGGTTGTTCTTTCAACCGGTTACTCAGTTGGCATGGCCTTCCAGAGATACTAAGTGTAGGCCGGACATCTCTAGGAACTGTGGTATTGATGTTGTACCGTATGAAGCTGAGTATAAACACACGCATAATCTGCAGTGGGCTCAGGGAAAGGCCGGTGAAGATAGGGTTCATGTAGTTCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATTCCCTTAAACCCGAAGTCCCTGAAACTTTAAAAGCTACCGTTGCTCCAGAATCCAGTCGGTCGGAAATGTCTGATACTCATACTAATTCTAATCAAGAATGTTTTGAAGCTTGTTCTGGTCCTGAATTAATCAAGGATCAATCATTTAACAATGAGATAGTTGAGGAAAAGGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGTGGAAGTAGCTTGTCTACTGTTTCTAATTCTGTTCAGCATGAAAAGTTGACTGGAAAAGGTAAAAGAAGTTTAAGGCTTTATGAGCTACTTCAAATGGAATCTTGGGATGATCAATGTAATGATTCCTCAGTTCCGATGGAGTCAATACTAGATGAGCATACAAGACCTTGCTCGTCTACTGTAAGAGAAGATGGCTCTAAACATCAGGATGAAGGCCCGTCTACATCAGGGGAAAATGGAAGCACTGGGTTTGGTTCAACCAACAAGGAGCACGAAGCTGTTTTTCCTGCTTCTGTATCAAGGCAGAATTCAAAAAAGTCATTTATCGGTGCAAAAATTAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAAGAAAGTAGTGTTGATGAGAAAATATTAGAAGCCTCTGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGAGCTCTTGAAAGAACAGAAGAGGCATACATGGAAACGGCGGAGAATAATCTGGACAAAAATCCAGAACTTGCTATAATGGGGTCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGCCATCCTAATTCAAGCTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTACGCATGGAGCTCGATAGGATTTCAGAGGAGTCTCCAATTCACAACCATAACAATCATGTTATCAAGATGAATAAAAACCGCGAGATATCATTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGACCACAGCACCAGTATTGAAGAGGAAGTTTCAAGAATAAGAGCAGAACACCCTGATGATAGTCAGGCCATATTGAATGATCGAGTGAAAGGAAATTTAAAAGTTACCAGAGCATTTGGCGCCGGGTTCTTGAAGAGGCCGTCTTTTAACGAAGCTCTACTCGAGGTGTTTCAAGTTAAATATATCGGCTCTGCTCCTTACCTAAGTTGCACTCCTTCTGTACTTCACCATCGACTTTCTTCAAGTGACCGATTCTTGGTACTCTCCTCTGATGGGCTTTACCAATATTTCAGCAATGAAGAAGTGGTTGCCCATGTCACATGGTTCATGGAAAATGTTCCAGAAGGCGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCTGCGCTGCTAAAAAGAATGGAATGGATTTTCATGAACTGCTTGATATTCCTCATGGAGATCGGCGTAAATATCACGATGATGTATCTGTCATGGTCGTTTCTTTGGAGGGAAGGATTTGGAGATCATCGGGATAA
Protein sequence

>Msa0081270

MGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQGKNFPETTFKTISGASVSANVSTARTGGGNQSAMFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQHLMRSVSGPVKNTFSRTFSKHSMGGSWMQRLFFQPVTQLAWPSRDTKCRPDISRNCGIDVVPYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDSLKPEVPETLKATVAPESSRSEMSDTHTNSNQECFEACSGPELIKDQSFNNEIVEEKAEVNVNVEHQLSNCGSSLSTVSNSVQHEKLTGKGKRSLRLYELLQMESWDDQCNDSSVPMESILDEHTRPCSSTVREDGSKHQDEGPSTSGENGSTGFGSTNKEHEAVFPASVSRQNSKKSFIGAKIKKMYRKPKSLCKKLFPWSYDWHREESSVDEKILEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMETAENNLDKNPELAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVSRIRAEHPDDSQAILNDRVKGNLKVTRAFGAGFLKRPSFNEALLEVFQVKYIGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG*