Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017730 | sp|Q8VY07|EPN1_ARATH | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017730 | Msa0093850 | 0.803568 | 3.276948e-49 | -8.615850e-47 |
| Msa0017730 | Msa0098240 | 0.883810 | 3.273217e-71 | -8.615850e-47 |
| Msa0017730 | Msa0138360 | 0.803586 | 3.247516e-49 | -8.615850e-47 |
| Msa0017730 | Msa0145960 | 0.823628 | 1.250246e-53 | -8.615850e-47 |
| Msa0017730 | Msa0147980 | 0.821735 | 3.446987e-53 | -8.615850e-47 |
| Msa0017730 | Msa0163510 | 0.802711 | 4.927782e-49 | -8.615850e-47 |
| Msa0017730 | Msa0185280 | 0.828058 | 1.110325e-54 | -8.615850e-47 |
| Msa0017730 | Msa0190870 | 0.823492 | 1.345302e-53 | -8.615850e-47 |
| Msa0017730 | Msa0202490 | 0.820143 | 8.013547e-53 | -8.615850e-47 |
| Msa0017730 | Msa0241830 | 0.803367 | 3.605596e-49 | -8.615850e-47 |
| Msa0017730 | Msa0245580 | 0.831063 | 2.064319e-55 | -8.615850e-47 |
| Msa0017730 | Msa0261010 | 0.804518 | 2.078347e-49 | -8.615850e-47 |
| Msa0017730 | Msa0284180 | 0.821599 | 3.705844e-53 | -8.615850e-47 |
| Msa0017730 | Msa0295250 | 0.803947 | 2.733764e-49 | -8.615850e-47 |
| Msa0017730 | Msa0296250 | 0.820393 | 7.025415e-53 | -8.615850e-47 |
| Msa0017730 | Msa0300280 | 0.815608 | 8.474126e-52 | -8.615850e-47 |
| Msa0017730 | Msa0315520 | 0.801071 | 1.070247e-48 | -8.615850e-47 |
| Msa0017730 | Msa0320590 | 0.805557 | 1.260040e-49 | -8.615850e-47 |
| Msa0017730 | Msa0332640 | 0.814513 | 1.482519e-51 | -8.615850e-47 |
| Msa0017730 | Msa0336540 | 0.818073 | 2.371219e-52 | -8.615850e-47 |
| Msa0017730 | Msa0339020 | 0.800074 | 1.709388e-48 | -8.615850e-47 |
| Msa0017730 | Msa0363060 | 0.822414 | 2.399340e-53 | -8.615850e-47 |
| Msa0017730 | Msa0377820 | 0.863540 | 2.313944e-64 | -8.615850e-47 |
| Msa0017730 | Msa0426580 | 0.844014 | 9.827507e-59 | -8.615850e-47 |
| Msa0017730 | Msa0434570 | 0.810530 | 1.101209e-50 | -8.615850e-47 |
| Msa0017730 | Msa0434770 | 0.809714 | 1.650979e-50 | -8.615850e-47 |
| Msa0017730 | Msa0439960 | 0.819641 | 1.044066e-52 | -8.615850e-47 |
| Msa0017730 | Msa0456430 | 0.802735 | 4.872060e-49 | -8.615850e-47 |
| Msa0017730 | Msa0472930 | 0.865950 | 4.071468e-65 | -8.615850e-47 |
| Msa0017730 | Msa0517590 | 0.830604 | 2.674075e-55 | -8.615850e-47 |
| Msa0017730 | Msa0531250 | 0.814381 | 1.585791e-51 | -8.615850e-47 |
| Msa0017730 | Msa0534980 | 0.811182 | 7.955480e-51 | -8.615850e-47 |
| Msa0017730 | Msa0593700 | 0.811775 | 5.912859e-51 | -8.615850e-47 |
| Msa0017730 | Msa0610550 | 0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0017730 | Msa0622790 | 0.812435 | 4.245116e-51 | -8.615850e-47 |
| Msa0017730 | Msa0628420 | 0.821068 | 4.914840e-53 | -8.615850e-47 |
| Msa0017730 | Msa0633570 | 0.811297 | 7.512832e-51 | -8.615850e-47 |
| Msa0017730 | Msa0690310 | 0.813741 | 2.194875e-51 | -8.615850e-47 |
| Msa0017730 | Msa0693330 | 0.830898 | 2.265491e-55 | -8.615850e-47 |
| Msa0017730 | Msa0706500 | 0.806136 | 9.525735e-50 | -8.615850e-47 |
| Msa0017730 | Msa0752700 | 0.820718 | 5.916528e-53 | -8.615850e-47 |
| Msa0017730 | Msa0794970 | 0.807076 | 6.029882e-50 | -8.615850e-47 |
| Msa0017730 | Msa0830660 | 0.803463 | 3.444633e-49 | -8.615850e-47 |
| Msa0017730 | Msa0831100 | 0.813966 | 1.958885e-51 | -8.615850e-47 |
| Msa0017730 | Msa0959520 | 0.825156 | 5.466062e-54 | -8.615850e-47 |
| Msa0017730 | Msa0995370 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0017730 | Msa1083700 | 0.863390 | 2.575232e-64 | -8.615850e-47 |
| Msa0017730 | Msa1123350 | 0.834972 | 2.199758e-56 | -8.615850e-47 |
| Msa0017730 | Msa1127590 | 0.826001 | 3.446694e-54 | -8.615850e-47 |
| Msa0017730 | Msa1175350 | 0.814631 | 1.396618e-51 | -8.615850e-47 |
| Msa0017730 | Msa1206650 | 0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0017730 | Msa1260220 | 0.828014 | 1.137792e-54 | -8.615850e-47 |
| Msa0017730 | Msa1267830 | 0.811876 | 5.621647e-51 | -8.615850e-47 |
| Msa0017730 | Msa1292020 | 0.842300 | 2.813700e-58 | -8.615850e-47 |
| Msa0017730 | Msa1373820 | 0.817894 | 2.602466e-52 | -8.615850e-47 |
| Msa0017730 | Msa1381260 | 0.844612 | 6.787430e-59 | -8.615850e-47 |
| Msa0017730 | Msa1411950 | 0.831951 | 1.247730e-55 | -8.615850e-47 |
| Msa0017730 | Msa1433870 | 0.810418 | 1.164393e-50 | -8.615850e-47 |
| Msa0017730 | Msa1434740 | 0.811724 | 6.068553e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017730 | MtrunA17_Chr1g0151921 | 96.727 | 550 | 15 | 2 | 1 | 549 | 1 | 548 | 0.0 | 1071 |
| Msa0017730 | MtrunA17_Chr7g0214661 | 52.995 | 217 | 86 | 3 | 5 | 221 | 3 | 203 | 3.45e-71 | 245 |
| Msa0017730 | MtrunA17_Chr7g0214661 | 46.753 | 77 | 36 | 1 | 450 | 521 | 790 | 866 | 1.24e-12 | 70.9 |
| Msa0017730 | MtrunA17_Chr7g0214591 | 52.857 | 140 | 54 | 1 | 31 | 170 | 17 | 144 | 6.48e-48 | 163 |
| Msa0017730 | MtrunA17_Chr4g0031511 | 30.137 | 146 | 101 | 1 | 11 | 155 | 16 | 161 | 1.78e-17 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017730 | AT5G11710.2 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 544 |
| Msa0017730 | AT5G11710.1 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 544 |
| Msa0017730 | AT5G11710.3 | 56.559 | 587 | 190 | 19 | 1 | 549 | 1 | 560 | 0.0 | 544 |
| Msa0017730 | AT2G43160.4 | 46.488 | 299 | 121 | 8 | 5 | 269 | 3 | 296 | 4.60e-72 | 243 |
| Msa0017730 | AT2G43160.3 | 46.488 | 299 | 121 | 8 | 5 | 269 | 3 | 296 | 7.42e-71 | 244 |
| Msa0017730 | AT2G43160.2 | 46.488 | 299 | 121 | 8 | 5 | 269 | 3 | 296 | 7.42e-71 | 244 |
| Msa0017730 | AT2G43160.5 | 46.488 | 299 | 121 | 8 | 5 | 269 | 3 | 296 | 7.42e-71 | 244 |
| Msa0017730 | AT2G43160.1 | 46.488 | 299 | 121 | 8 | 5 | 269 | 3 | 296 | 7.42e-71 | 244 |
| Msa0017730 | AT3G59290.1 | 49.393 | 247 | 103 | 6 | 5 | 241 | 3 | 237 | 5.28e-66 | 232 |
| Msa0017730 | AT3G23350.1 | 33.577 | 137 | 82 | 2 | 25 | 155 | 31 | 164 | 6.33e-14 | 72.8 |
| Msa0017730 | AT3G23350.2 | 33.577 | 137 | 82 | 2 | 25 | 155 | 32 | 165 | 6.60e-14 | 72.8 |
| Msa0017730 | AT3G46540.1 | 32.031 | 128 | 86 | 1 | 12 | 138 | 30 | 157 | 4.33e-13 | 70.9 |
| Msa0017730 | AT3G46540.3 | 35.849 | 106 | 67 | 1 | 34 | 138 | 4 | 109 | 4.73e-13 | 69.7 |
| Msa0017730 | AT3G46540.2 | 32.031 | 128 | 86 | 1 | 12 | 138 | 18 | 145 | 4.85e-13 | 70.5 |
Find 141 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCTTCTGTTCGATTTC+AGG | 0.151663 | 1_1:+29621691 | None:intergenic |
| ATTAGCTGTTATAGAGTATT+TGG | 0.202159 | 1_1:-29620084 | Msa0017730:CDS |
| AGTAACAAATATGGAGGTTT+TGG | 0.263690 | 1_1:-29619565 | Msa0017730:CDS |
| CTTGCTATTCCTACCTTTCT+TGG | 0.264866 | 1_1:+29615879 | None:intergenic |
| TTCAGGTGAAGTCTGGCATT+TGG | 0.264950 | 1_1:-29616737 | Msa0017730:CDS |
| CTCTAATGTTTCGTCTAAAA+AGG | 0.280664 | 1_1:-29616766 | Msa0017730:CDS |
| GGCAGCCAAAACTATCAATT+TGG | 0.281481 | 1_1:-29616046 | Msa0017730:CDS |
| TCAAACCAGGTTGATCTCTT+TGG | 0.293931 | 1_1:-29617943 | Msa0017730:CDS |
| GCCTTGACCTTCCTTTGTTC+CGG | 0.305544 | 1_1:-29615719 | Msa0017730:three_prime_UTR |
| TCAGGTGAAGTCTGGCATTT+GGG | 0.306109 | 1_1:-29616736 | Msa0017730:CDS |
| TGGACAAGATTGGTTGAAAC+TGG | 0.327690 | 1_1:-29620248 | Msa0017730:CDS |
| ACCCACCAAATTGATAGTTT+TGG | 0.328870 | 1_1:+29616041 | None:intergenic |
| TTTGAATATGTTGAGCCTAA+TGG | 0.332003 | 1_1:-29619876 | Msa0017730:CDS |
| AGCTGGTTATGAATGTTCTT+TGG | 0.350077 | 1_1:-29620268 | Msa0017730:CDS |
| TTGCTATTCCTACCTTTCTT+GGG | 0.353844 | 1_1:+29615880 | None:intergenic |
| TTGAATATGTTGAGCCTAAT+GGG | 0.363331 | 1_1:-29619875 | Msa0017730:CDS |
| ATTTGAGTACTGCAGTTTGC+TGG | 0.366194 | 1_1:+29615780 | None:intergenic |
| TTGCTGTCAGGCTGCACAGC+TGG | 0.369928 | 1_1:+29616969 | None:intergenic |
| AGTGGGAGCAGTAACAAATA+TGG | 0.392500 | 1_1:-29619574 | Msa0017730:CDS |
| AGAGCTATGGGTACAGGATC+TGG | 0.399817 | 1_1:-29616133 | Msa0017730:CDS |
| AGATTTGCTCGGTGACTTCA+TGG | 0.401461 | 1_1:-29617917 | Msa0017730:CDS |
| TTCACTCATTCTTTGTGTGT+CGG | 0.414467 | 1_1:-29615971 | Msa0017730:three_prime_UTR |
| TGTGCTTAATTTAGGTATGT+TGG | 0.422310 | 1_1:-29619646 | Msa0017730:intron |
| AGGCTCAACATATTCAAAAC+TGG | 0.430008 | 1_1:+29619881 | None:intergenic |
| AATATAATCACAATAGTGAT+AGG | 0.433057 | 1_1:+29615854 | None:intergenic |
| TGCAACTGATGATGAACCTT+GGG | 0.433222 | 1_1:-29620545 | Msa0017730:CDS |
| GGTGAATCTGAAGGTGCTTA+AGG | 0.434179 | 1_1:-29621716 | Msa0017730:CDS |
| TCAGGCTGCACAGCTGGTGC+AGG | 0.438377 | 1_1:+29616975 | None:intergenic |
| AAGGTTCTGCACGGTCTGTC+AGG | 0.441213 | 1_1:-29619411 | Msa0017730:intron |
| CCCTCCAACTACATTATACA+TGG | 0.448211 | 1_1:-29616158 | Msa0017730:CDS |
| GAATGTTCTTTGGACAAGAT+TGG | 0.451236 | 1_1:-29620258 | Msa0017730:CDS |
| ATTATACATGGGGAGAGCTA+TGG | 0.454996 | 1_1:-29616146 | Msa0017730:CDS |
| CTCTTTGGACAAGATTTGCT+CGG | 0.461867 | 1_1:-29617928 | Msa0017730:CDS |
| GATCCCTCAAAATTATTAAG+TGG | 0.467363 | 1_1:+29616891 | None:intergenic |
| AAAGTATCCCTTGTCGATGT+TGG | 0.469042 | 1_1:-29616226 | Msa0017730:CDS |
| CTTGTCGATGTTGGAATTGT+GGG | 0.472687 | 1_1:-29616217 | Msa0017730:CDS |
| CTCCCCATGTATAATGTAGT+TGG | 0.476200 | 1_1:+29616154 | None:intergenic |
| TCTTCCTTGCAGCAAAAGTC+AGG | 0.478751 | 1_1:-29618381 | Msa0017730:intron |
| AGTCCCACATCCTTCCCATT+AGG | 0.482355 | 1_1:+29619861 | None:intergenic |
| GGGTCCTCATGGTACTGTGC+TGG | 0.484662 | 1_1:-29620524 | Msa0017730:CDS |
| GGATCTGGTCTTGGTATGTA+TGG | 0.487460 | 1_1:-29616118 | Msa0017730:CDS |
| GTCAGAGGTTGATCTCTTTG+CGG | 0.488917 | 1_1:-29617848 | Msa0017730:CDS |
| AGTGGAATCACATACAAATC+CGG | 0.492190 | 1_1:-29619613 | Msa0017730:CDS |
| ATGTAGCGTTGTGTTAATTG+AGG | 0.501918 | 1_1:+29621951 | None:intergenic |
| ATGGGTACAGGATCTGGTCT+TGG | 0.504365 | 1_1:-29616127 | Msa0017730:CDS |
| CCTTGTCGATGTTGGAATTG+TGG | 0.508418 | 1_1:-29616218 | Msa0017730:CDS |
| AGCCAAAACTATCAATTTGG+TGG | 0.514743 | 1_1:-29616043 | Msa0017730:CDS |
| CTTCAAACAGAGACTTCAGC+TGG | 0.522456 | 1_1:-29617970 | Msa0017730:intron |
| TTAATTGAGGCAAAATTCGA+TGG | 0.523250 | 1_1:+29621964 | None:intergenic |
| CAAATTTGACCTACTTGTCA+CGG | 0.524222 | 1_1:+29619751 | None:intergenic |
| TCTGACGCATCACTAGTTGC+TGG | 0.528495 | 1_1:+29617865 | None:intergenic |
| ATGGGGAGAGCTATGGGTAC+AGG | 0.530659 | 1_1:-29616139 | Msa0017730:CDS |
| TATGTTGGTGTTTCATCTAG+TGG | 0.532003 | 1_1:-29619631 | Msa0017730:CDS |
| TTTCAGTACTGAATGTCAGC+TGG | 0.535749 | 1_1:-29620285 | Msa0017730:intron |
| GGATTAGATGAAAGAGAGAA+AGG | 0.535777 | 1_1:-29616181 | Msa0017730:CDS |
| CCCATGTATAATGTAGTTGG+AGG | 0.538487 | 1_1:+29616157 | None:intergenic |
| GCGCTATGATGAAGCAAAAG+TGG | 0.543758 | 1_1:-29619500 | Msa0017730:CDS |
| GATTGATAACAGAAAGAGAG+AGG | 0.544590 | 1_1:-29621737 | Msa0017730:intron |
| AGGATGTGGGACTCAATGTA+AGG | 0.551356 | 1_1:-29619851 | Msa0017730:CDS |
| TTATACATGGGGAGAGCTAT+GGG | 0.558608 | 1_1:-29616145 | Msa0017730:CDS |
| TCAAAAGTGCTGTTATTCAC+AGG | 0.558665 | 1_1:+29616930 | None:intergenic |
| TGTTGGTGTAACTGAAGGAA+TGG | 0.559111 | 1_1:+29617016 | None:intergenic |
| ATTGAAAACAAGTCAACTGT+TGG | 0.563012 | 1_1:+29616999 | None:intergenic |
| TCGGTGGCAGCATTAGTTGA+GGG | 0.563296 | 1_1:+29616819 | None:intergenic |
| GTAACATTACATTTCTCGAA+CGG | 0.564681 | 1_1:+29621859 | None:intergenic |
| AAGATTGGTTGAAACTGGAA+AGG | 0.564709 | 1_1:-29620243 | Msa0017730:CDS |
| TTAAGTGGAACAGAAGCAAA+GGG | 0.564718 | 1_1:+29616906 | None:intergenic |
| GGTTCCTGAAATCGAACAGA+AGG | 0.566856 | 1_1:-29621695 | Msa0017730:intron |
| ATTAAGTGGAACAGAAGCAA+AGG | 0.569259 | 1_1:+29616905 | None:intergenic |
| TCTCCAGCTGTTGACTGTGA+AGG | 0.569619 | 1_1:+29616088 | None:intergenic |
| ACTACTAAATGAGGTTGTCC+CGG | 0.571326 | 1_1:+29619594 | None:intergenic |
| AATAAGACCGGAACAAAGGA+AGG | 0.571371 | 1_1:+29615712 | None:intergenic |
| ACTCCTTCACAGTCAACAGC+TGG | 0.572617 | 1_1:-29616091 | Msa0017730:CDS |
| GCCAAAACTATCAATTTGGT+GGG | 0.572703 | 1_1:-29616042 | Msa0017730:CDS |
| GGTACACTTGCACTTTGAGA+AGG | 0.573687 | 1_1:+29618308 | None:intergenic |
| GTGGAATCACATACAAATCC+GGG | 0.577208 | 1_1:-29619612 | Msa0017730:CDS |
| ACTTACGAGCAGATATATTG+AGG | 0.577768 | 1_1:+29616685 | None:intergenic |
| ATCGGTGGCAGCATTAGTTG+AGG | 0.578958 | 1_1:+29616818 | None:intergenic |
| ATTCCATGCTCAGGATGAAG+TGG | 0.579767 | 1_1:-29617057 | Msa0017730:intron |
| TCAACTGTTGGTGTAACTGA+AGG | 0.580371 | 1_1:+29617011 | None:intergenic |
| GATGAACCTTGGGGTCCTCA+TGG | 0.580644 | 1_1:-29620535 | Msa0017730:CDS |
| ACATAAAGAATGAATAAGAC+CGG | 0.581344 | 1_1:+29615700 | None:intergenic |
| TAGTGATAGCTACGGAGACA+AGG | 0.581504 | 1_1:-29619524 | Msa0017730:CDS |
| TCAACTAATGCTGCCACCGA+TGG | 0.582272 | 1_1:-29616816 | Msa0017730:CDS |
| GGGACTCAATGTAAGGAAGA+AGG | 0.582398 | 1_1:-29619844 | Msa0017730:CDS |
| AGCAACTAGTGATGCGTCAG+AGG | 0.584280 | 1_1:-29617863 | Msa0017730:CDS |
| TCTACACAGATCAATCATCA+TGG | 0.584709 | 1_1:-29621906 | Msa0017730:exon |
| AAGAATGAGTGAAAATGTGA+TGG | 0.585843 | 1_1:+29615981 | None:intergenic |
| ACTGCTCCCACTACTAAATG+AGG | 0.585899 | 1_1:+29619585 | None:intergenic |
| AGGAGCTAGTTCTCAACCAC+AGG | 0.588172 | 1_1:-29617788 | Msa0017730:intron |
| TAATTGAGGCAAAATTCGAT+GGG | 0.591731 | 1_1:+29621965 | None:intergenic |
| TCATCAAAGTCGTCCTCAGT+AGG | 0.591925 | 1_1:+29618287 | None:intergenic |
| TTTACCACTTGTACTACCAT+CGG | 0.597131 | 1_1:+29616800 | None:intergenic |
| AAAGAGAGAGGTGAATCTGA+AGG | 0.598297 | 1_1:-29621725 | Msa0017730:CDS |
| GGACAACCTCATTTAGTAGT+GGG | 0.598565 | 1_1:-29619591 | Msa0017730:CDS |
| AATGAATAAGACCGGAACAA+AGG | 0.601282 | 1_1:+29615708 | None:intergenic |
| AGATCTGATCTGAAGGGGAA+AGG | 0.604749 | 1_1:+29621926 | None:intergenic |
| TGGGCTGATTCGCTAAGCCG+TGG | 0.607031 | 1_1:-29616717 | Msa0017730:CDS |
| CTAGCTCCTTTGTCCGCATG+TGG | 0.609894 | 1_1:+29617802 | None:intergenic |
| TGAGCCTAATGGGAAGGATG+TGG | 0.610430 | 1_1:-29619865 | Msa0017730:CDS |
| CCACAATTCCAACATCGACA+AGG | 0.611361 | 1_1:+29616218 | None:intergenic |
| ATGCAACTGATGATGAACCT+TGG | 0.611657 | 1_1:-29620546 | Msa0017730:CDS |
| TCTGTGTAGATCTGATCTGA+AGG | 0.612067 | 1_1:+29621919 | None:intergenic |
| TTCAGCTGGAATCTCAAACC+AGG | 0.612206 | 1_1:-29617956 | Msa0017730:CDS |
| CTGTGTAGATCTGATCTGAA+GGG | 0.616464 | 1_1:+29621920 | None:intergenic |
| GTCGATGTTGGAATTGTGGG+TGG | 0.616546 | 1_1:-29616214 | Msa0017730:CDS |
| ATAGAGTATTTGGTATCACA+TGG | 0.617992 | 1_1:-29620074 | Msa0017730:CDS |
| GGGACAACCTCATTTAGTAG+TGG | 0.619718 | 1_1:-29619592 | Msa0017730:CDS |
| GATAGGTTTAGTGATAGCTA+CGG | 0.620987 | 1_1:-29619532 | Msa0017730:CDS |
| CACAATTCCAACATCGACAA+GGG | 0.621760 | 1_1:+29616219 | None:intergenic |
| TGTGTAGATCTGATCTGAAG+GGG | 0.623085 | 1_1:+29621921 | None:intergenic |
| CTTGTCCAAAGAGATCAACC+TGG | 0.623812 | 1_1:+29617938 | None:intergenic |
| ACCGGAACAAAGGAAGGTCA+AGG | 0.625567 | 1_1:+29615718 | None:intergenic |
| TGGTTGAAACTGGAAAGGAT+TGG | 0.625908 | 1_1:-29620238 | Msa0017730:CDS |
| GTTGGTGTAACTGAAGGAAT+GGG | 0.627816 | 1_1:+29617017 | None:intergenic |
| TACTCAGGAAAATCACGCCA+TGG | 0.632757 | 1_1:-29619469 | Msa0017730:CDS |
| TTACTAGTAGATGTTCCTCT+CGG | 0.634177 | 1_1:+29618257 | None:intergenic |
| AGTGATAGCTACGGAGACAA+GGG | 0.634809 | 1_1:-29619523 | Msa0017730:CDS |
| CCTCCAACTACATTATACAT+GGG | 0.635166 | 1_1:-29616157 | Msa0017730:CDS |
| GCCACCGATGGTAGTACAAG+TGG | 0.636003 | 1_1:-29616804 | Msa0017730:CDS |
| GGATTGGCGATATGTATACA+AGG | 0.637371 | 1_1:-29620222 | Msa0017730:intron |
| TATTGAGGTCAATCAATCCA+CGG | 0.637570 | 1_1:+29616700 | None:intergenic |
| CCATGTATAATGTAGTTGGA+GGG | 0.640533 | 1_1:+29616158 | None:intergenic |
| TCTGGTCTTGGTATGTATGG+TGG | 0.648533 | 1_1:-29616115 | Msa0017730:CDS |
| ACCACTTGTACTACCATCGG+TGG | 0.649891 | 1_1:+29616803 | None:intergenic |
| GAGCCTAATGGGAAGGATGT+GGG | 0.656107 | 1_1:-29619864 | Msa0017730:CDS |
| GGGAGCAGTAACAAATATGG+AGG | 0.659082 | 1_1:-29619571 | Msa0017730:CDS |
| GCAGCACCACATGCGGACAA+AGG | 0.659400 | 1_1:-29617808 | Msa0017730:CDS |
| ACAGTACCATGAGGACCCCA+AGG | 0.661607 | 1_1:+29620529 | None:intergenic |
| AAGTGCAAGTGTACCTACTG+AGG | 0.672364 | 1_1:-29618300 | Msa0017730:CDS |
| GTGATAGCTACGGAGACAAG+GGG | 0.672418 | 1_1:-29619522 | Msa0017730:CDS |
| CTCCAACTACATTATACATG+GGG | 0.675489 | 1_1:-29616156 | Msa0017730:CDS |
| AAAGTGGACAAAGATTACTC+AGG | 0.681481 | 1_1:-29619484 | Msa0017730:CDS |
| TGTGCAGCCTGACAGCAAGT+CGG | 0.682310 | 1_1:-29616964 | Msa0017730:CDS |
| ATATGTTGAGCCTAATGGGA+AGG | 0.688159 | 1_1:-29619871 | Msa0017730:CDS |
| ATTGTGGGTGGACTAAGCGA+TGG | 0.688579 | 1_1:-29616202 | Msa0017730:CDS |
| GCTTAATGTTGTATAATGTG+TGG | 0.689763 | 1_1:-29615744 | Msa0017730:three_prime_UTR |
| TGTGCTGGCAGAGATTGCAA+CGG | 0.693145 | 1_1:-29620509 | Msa0017730:CDS |
| TGTATCAGCAGCACCACATG+CGG | 0.718450 | 1_1:-29617815 | Msa0017730:CDS |
| GCAACTGATGATGAACCTTG+GGG | 0.746004 | 1_1:-29620544 | Msa0017730:CDS |
| TCTGCCAGCACAGTACCATG+AGG | 0.764740 | 1_1:+29620520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCAAAAAAAAAAAAAAAA+AGG | + | chr1_1:29615905-29615924 | None:intergenic | 10.0% |
| !!! | TAAATATATTTTTCTCAATA+AGG | - | chr1_1:29616123-29616142 | Msa0017730:CDS | 10.0% |
| !!! | TTTAATTTTTGAATTTCTTT+TGG | - | chr1_1:29617290-29617309 | Msa0017730:intron | 10.0% |
| !! | TGAAATTTAATATATTTGTT+AGG | + | chr1_1:29618709-29618728 | None:intergenic | 10.0% |
| !! | AAATTAAAAAGCAATATAAC+AGG | + | chr1_1:29617278-29617297 | None:intergenic | 15.0% |
| !!! | TAATTTTCTTGTTTTTCTTT+TGG | - | chr1_1:29618056-29618075 | Msa0017730:intron | 15.0% |
| !! | ATTACATTGAAACATATTTA+GGG | - | chr1_1:29621214-29621233 | Msa0017730:intron | 15.0% |
| !! | ACATAAGTAACTAAAATAAT+TGG | + | chr1_1:29621451-29621470 | None:intergenic | 15.0% |
| !!! | GTACAATTTCAATTTGATTT+CGG | + | chr1_1:29616163-29616182 | None:intergenic | 20.0% |
| !!! | TTAGATTTTGTAATAAAGAG+AGG | - | chr1_1:29616492-29616511 | Msa0017730:intron | 20.0% |
| !! | AGATATATGATAGAACAATA+TGG | - | chr1_1:29616603-29616622 | Msa0017730:intron | 20.0% |
| !!! | ATGATACATTTTATGTTTTC+TGG | - | chr1_1:29616809-29616828 | Msa0017730:CDS | 20.0% |
| !! | ATATCAGTAATGCTTAATAA+AGG | - | chr1_1:29616886-29616905 | Msa0017730:CDS | 20.0% |
| !! | TATCAGTAATGCTTAATAAA+GGG | - | chr1_1:29616887-29616906 | Msa0017730:CDS | 20.0% |
| !! | ACATTCTCAATAAATAGAAA+AGG | + | chr1_1:29616988-29617007 | None:intergenic | 20.0% |
| !! | TGTAACTTAAAGTAATAACA+TGG | + | chr1_1:29617546-29617565 | None:intergenic | 20.0% |
| !!! | TGTTATTACTTTAAGTTACA+AGG | - | chr1_1:29617546-29617565 | Msa0017730:intron | 20.0% |
| !! | TTAGTTTACCTAATCATTAT+GGG | + | chr1_1:29618013-29618032 | None:intergenic | 20.0% |
| !!! | AAGTGTAATTTTTCTCTAAT+AGG | - | chr1_1:29618847-29618866 | Msa0017730:intron | 20.0% |
| !!! | TTTTTCTCTAATAGGTTTTA+TGG | - | chr1_1:29618855-29618874 | Msa0017730:intron | 20.0% |
| !! | AACTGTTACTATTAAAATGT+AGG | - | chr1_1:29618945-29618964 | Msa0017730:intron | 20.0% |
| !! | ACTGTTACTATTAAAATGTA+GGG | - | chr1_1:29618946-29618965 | Msa0017730:intron | 20.0% |
| !! | CAATTAGAAATCTTTCTTAT+GGG | + | chr1_1:29618977-29618996 | None:intergenic | 20.0% |
| !!! | GGAAAAAATTTATTTTGACT+TGG | - | chr1_1:29619153-29619172 | Msa0017730:intron | 20.0% |
| !! | AGCTAACATTAAAAAAACAA+CGG | + | chr1_1:29619992-29620011 | None:intergenic | 20.0% |
| !!! | TAAATCTGTTTTATTGGTTT+GGG | + | chr1_1:29620469-29620488 | None:intergenic | 20.0% |
| !!! | TCATTCTAAATCTGTTTTAT+TGG | + | chr1_1:29620475-29620494 | None:intergenic | 20.0% |
| !! | AATATGTTTCAATGTAATCA+TGG | + | chr1_1:29621212-29621231 | None:intergenic | 20.0% |
| !! | GATTACATTGAAACATATTT+AGG | - | chr1_1:29621213-29621232 | Msa0017730:intron | 20.0% |
| !! | TAAGATTAAGTACATGAATT+TGG | - | chr1_1:29621312-29621331 | Msa0017730:intron | 20.0% |
| !!! | TTTGTGATATTTTTTACTTC+TGG | + | chr1_1:29621711-29621730 | None:intergenic | 20.0% |
| !! | AATATAATCACAATAGTGAT+AGG | + | chr1_1:29621874-29621893 | None:intergenic | 20.0% |
| ! | AATTGAAATTGTACGAGAAT+TGG | - | chr1_1:29616169-29616188 | Msa0017730:CDS | 25.0% |
| ! | AAATGACAATATTAGAGAGT+TGG | - | chr1_1:29616399-29616418 | Msa0017730:intron | 25.0% |
| ! | AATGACAATATTAGAGAGTT+GGG | - | chr1_1:29616400-29616419 | Msa0017730:intron | 25.0% |
| !!! | TGGTTTCAATTTGTTTTACA+TGG | - | chr1_1:29616934-29616953 | Msa0017730:CDS | 25.0% |
| ! | AAAAATCAAAACAATACCGA+TGG | + | chr1_1:29617130-29617149 | None:intergenic | 25.0% |
| ! | AACACCTAAATTATAAAGAG+TGG | + | chr1_1:29617157-29617176 | None:intergenic | 25.0% |
| ! | ACTCTTTATAATTTAGGTGT+TGG | - | chr1_1:29617156-29617175 | Msa0017730:intron | 25.0% |
| !!! | GATGGCTATTTACAATTTTT+TGG | + | chr1_1:29617245-29617264 | None:intergenic | 25.0% |
| !!! | TGAATTTCTTTTGGTTTTCA+TGG | - | chr1_1:29617299-29617318 | Msa0017730:intron | 25.0% |
| !! | ATTAGCTGTTATAGAGTATT+TGG | - | chr1_1:29617641-29617660 | Msa0017730:intron | 25.0% |
| !! | TAAACACCATATGCTTTTAT+TGG | - | chr1_1:29617809-29617828 | Msa0017730:CDS | 25.0% |
| !! | CTTTTCTCTATCATTCAAAA+GGG | + | chr1_1:29617922-29617941 | None:intergenic | 25.0% |
| !! | TCTTTTCTCTATCATTCAAA+AGG | + | chr1_1:29617923-29617942 | None:intergenic | 25.0% |
| ! | ATTTCAATCCCATAATGATT+AGG | - | chr1_1:29618002-29618021 | Msa0017730:intron | 25.0% |
| ! | CTTAGTTTACCTAATCATTA+TGG | + | chr1_1:29618014-29618033 | None:intergenic | 25.0% |
| ! | AAAACAATCCAACTATAGTA+TGG | + | chr1_1:29618388-29618407 | None:intergenic | 25.0% |
| !! | TTCACTAGTTTAAAAACTTG+GGG | + | chr1_1:29618527-29618546 | None:intergenic | 25.0% |
| !! | CTTCACTAGTTTAAAAACTT+GGG | + | chr1_1:29618528-29618547 | None:intergenic | 25.0% |
| ! | TAACAATTTCATAAACTCCT+TGG | + | chr1_1:29618558-29618577 | None:intergenic | 25.0% |
| ! | AGCTAATGTACAAAAAAGAA+AGG | + | chr1_1:29618612-29618631 | None:intergenic | 25.0% |
| !!! | TTTCTTTTTTGTACATTAGC+TGG | - | chr1_1:29618611-29618630 | Msa0017730:intron | 25.0% |
| !! | CTTTTTATCTTTCTTTACCT+TGG | - | chr1_1:29618745-29618764 | Msa0017730:intron | 25.0% |
| ! | CTAATGTTTGTTCTTCATAA+AGG | - | chr1_1:29618806-29618825 | Msa0017730:intron | 25.0% |
| !! | ATTGACACATTTTCTTCTAA+AGG | + | chr1_1:29618889-29618908 | None:intergenic | 25.0% |
| ! | GCAATTAGAAATCTTTCTTA+TGG | + | chr1_1:29618978-29618997 | None:intergenic | 25.0% |
| !! | AAAAAATTAAGCAGGAGTTT+TGG | - | chr1_1:29619176-29619195 | Msa0017730:intron | 25.0% |
| !!! | GACTATGTATTTTGATTTTG+AGG | - | chr1_1:29619693-29619712 | Msa0017730:intron | 25.0% |
| !! | TTTAAGATAGAACCTAATGA+CGG | + | chr1_1:29620048-29620067 | None:intergenic | 25.0% |
| ! | CAAACAATCTCATTCAATAT+TGG | + | chr1_1:29620117-29620136 | None:intergenic | 25.0% |
| !!! | GTGTTGATAAATTTTCACAT+GGG | - | chr1_1:29620251-29620270 | Msa0017730:CDS | 25.0% |
| !! | ATTTGAGATAATAACGAGTT+TGG | - | chr1_1:29620334-29620353 | Msa0017730:intron | 25.0% |
| !!! | ACGTTTTTTAGACTTTAGAA+GGG | - | chr1_1:29620357-29620376 | Msa0017730:intron | 25.0% |
| !!! | CTAAATCTGTTTTATTGGTT+TGG | + | chr1_1:29620470-29620489 | None:intergenic | 25.0% |
| ! | TTATGAATTAAGTCCAATGA+TGG | + | chr1_1:29620503-29620522 | None:intergenic | 25.0% |
| !! | TGTTCCACTTAATAATTTTG+AGG | - | chr1_1:29620830-29620849 | Msa0017730:intron | 25.0% |
| !! | GTTCCACTTAATAATTTTGA+GGG | - | chr1_1:29620831-29620850 | Msa0017730:intron | 25.0% |
| !!! | GTTTTAAATATGTAGTTGCA+TGG | - | chr1_1:29621176-29621195 | Msa0017730:intron | 25.0% |
| !!! | TTGAAACATATTTAGGGTTT+TGG | - | chr1_1:29621220-29621239 | Msa0017730:intron | 25.0% |
| ! | ATTAAGTACATGAATTTGGT+AGG | - | chr1_1:29621316-29621335 | Msa0017730:intron | 25.0% |
| !! | GATGACATATTTTCAAACTT+CGG | - | chr1_1:29621658-29621677 | Msa0017730:intron | 25.0% |
| ! | ACATAAAGAATGAATAAGAC+CGG | + | chr1_1:29622028-29622047 | None:intergenic | 25.0% |
| TAATTGAGGCAAAATTCGAT+GGG | + | chr1_1:29615763-29615782 | None:intergenic | 30.0% | |
| TTAATTGAGGCAAAATTCGA+TGG | + | chr1_1:29615764-29615783 | None:intergenic | 30.0% | |
| GTAACATTACATTTCTCGAA+CGG | + | chr1_1:29615869-29615888 | None:intergenic | 30.0% | |
| TGGAATGCTTATTAAAGATG+AGG | - | chr1_1:29616332-29616351 | Msa0017730:intron | 30.0% | |
| ATGACAATATTAGAGAGTTG+GGG | - | chr1_1:29616401-29616420 | Msa0017730:intron | 30.0% | |
| AATAAAGAGAGGAGATTAGA+TGG | - | chr1_1:29616503-29616522 | Msa0017730:intron | 30.0% | |
| ! | TAGTTTTCCTATGTCTCTTT+CGG | + | chr1_1:29616551-29616570 | None:intergenic | 30.0% |
| ! | TTTGTTGAGTCTGAAATTGA+TGG | - | chr1_1:29616676-29616695 | Msa0017730:intron | 30.0% |
| ! | AGCATATGATCACGTAATTT+TGG | - | chr1_1:29616703-29616722 | Msa0017730:CDS | 30.0% |
| !! | ATAATTTGTTGATGCAAGAC+AGG | - | chr1_1:29616727-29616746 | Msa0017730:CDS | 30.0% |
| TGTATCATCAAACTCAACAA+AGG | + | chr1_1:29616797-29616816 | None:intergenic | 30.0% | |
| ! | GCACATCTTAACAATGTTTT+TGG | - | chr1_1:29616914-29616933 | Msa0017730:CDS | 30.0% |
| AATAAATAGAAAAGGAGCCT+TGG | + | chr1_1:29616980-29616999 | None:intergenic | 30.0% | |
| TCTGCCACTCTTTATAATTT+AGG | - | chr1_1:29617150-29617169 | Msa0017730:intron | 30.0% | |
| ! | ATAGAGTATTTGGTATCACA+TGG | - | chr1_1:29617651-29617670 | Msa0017730:intron | 30.0% |
| ! | ATACTTTTCAGATCTCTGTA+AGG | - | chr1_1:29617706-29617725 | Msa0017730:intron | 30.0% |
| ! | TACTTTTCAGATCTCTGTAA+GGG | - | chr1_1:29617707-29617726 | Msa0017730:intron | 30.0% |
| ! | CCTTTACCAATAAAAGCATA+TGG | + | chr1_1:29617818-29617837 | None:intergenic | 30.0% |
| ! | CCATATGCTTTTATTGGTAA+AGG | - | chr1_1:29617815-29617834 | Msa0017730:CDS | 30.0% |
| TTTGAATATGTTGAGCCTAA+TGG | - | chr1_1:29617849-29617868 | Msa0017730:CDS | 30.0% | |
| TTGAATATGTTGAGCCTAAT+GGG | - | chr1_1:29617850-29617869 | Msa0017730:CDS | 30.0% | |
| !! | TCTTTTGGTGTGCTTAATTT+AGG | - | chr1_1:29618071-29618090 | Msa0017730:intron | 30.0% |
| TGTGCTTAATTTAGGTATGT+TGG | - | chr1_1:29618079-29618098 | Msa0017730:intron | 30.0% | |
| ! | AGTAACAAATATGGAGGTTT+TGG | - | chr1_1:29618160-29618179 | Msa0017730:intron | 30.0% |
| ! | GCTTCACTAGTTTAAAAACT+TGG | + | chr1_1:29618529-29618548 | None:intergenic | 30.0% |
| TTCATAAACTCCTTGGTAAA+CGG | + | chr1_1:29618551-29618570 | None:intergenic | 30.0% | |
| CACCATTGGAAAAAAAATGA+AGG | - | chr1_1:29618769-29618788 | Msa0017730:intron | 30.0% | |
| !!! | AGCCTTCATTTTTTTTCCAA+TGG | + | chr1_1:29618774-29618793 | None:intergenic | 30.0% |
| !! | CAAAATAAGCTTGTTGAACT+AGG | + | chr1_1:29619129-29619148 | None:intergenic | 30.0% |
| !!! | TCAACAAGCTTATTTTGACT+TGG | - | chr1_1:29619132-29619151 | Msa0017730:intron | 30.0% |
| ! | TGACTTGGAAAAAATTAAGC+AGG | - | chr1_1:29619168-29619187 | Msa0017730:intron | 30.0% |
| !!! | TTTGGTTTTTATGCACAGAA+AGG | - | chr1_1:29619255-29619274 | Msa0017730:intron | 30.0% |
| AGAATAGAATCATTGCAGTA+TGG | + | chr1_1:29619298-29619317 | None:intergenic | 30.0% | |
| !!! | TTTTTCTTCCGTTTTTTTGG+CGG | + | chr1_1:29619658-29619677 | None:intergenic | 30.0% |
| !!! | TGGTTTTTCTTCCGTTTTTT+TGG | + | chr1_1:29619661-29619680 | None:intergenic | 30.0% |
| !!! | TGTATTTTGATTTTGAGGAC+AGG | - | chr1_1:29619698-29619717 | Msa0017730:intron | 30.0% |
| ! | TTTTCTACAGAAACAGATGT+TGG | + | chr1_1:29619839-29619858 | None:intergenic | 30.0% |
| ! | ATTGGCAACATTCATACTTT+TGG | + | chr1_1:29620099-29620118 | None:intergenic | 30.0% |
| TCCATCGATGTGAATATTAT+TGG | - | chr1_1:29620149-29620168 | Msa0017730:intron | 30.0% | |
| ACCAATAATATTCACATCGA+TGG | + | chr1_1:29620153-29620172 | None:intergenic | 30.0% | |
| GAGGAGAACATTAGAAATAT+TGG | - | chr1_1:29620229-29620248 | Msa0017730:CDS | 30.0% | |
| !!! | GGTGTTGATAAATTTTCACA+TGG | - | chr1_1:29620250-29620269 | Msa0017730:CDS | 30.0% |
| !!! | GACGTTTTTTAGACTTTAGA+AGG | - | chr1_1:29620356-29620375 | Msa0017730:intron | 30.0% |
| AATACAAAGACTAGACTAGA+TGG | - | chr1_1:29620387-29620406 | Msa0017730:intron | 30.0% | |
| TAGAATGAATGATCCATCAT+TGG | - | chr1_1:29620487-29620506 | Msa0017730:intron | 30.0% | |
| GGGAAAATTTGGTTGTATTA+TGG | - | chr1_1:29620572-29620591 | Msa0017730:intron | 30.0% | |
| ATTGAAAACAAGTCAACTGT+TGG | + | chr1_1:29620729-29620748 | None:intergenic | 30.0% | |
| GATCCCTCAAAATTATTAAG+TGG | + | chr1_1:29620837-29620856 | None:intergenic | 30.0% | |
| CTCTAATGTTTCGTCTAAAA+AGG | - | chr1_1:29620959-29620978 | Msa0017730:intron | 30.0% | |
| !!! | ATGCAGTTACATGCTTTTTT+CGG | + | chr1_1:29621156-29621175 | None:intergenic | 30.0% |
| CAATGTAATCATGGAAGAAA+AGG | + | chr1_1:29621203-29621222 | None:intergenic | 30.0% | |
| ATATAATGCATTAATCACCC+TGG | + | chr1_1:29621270-29621289 | None:intergenic | 30.0% | |
| CATGTACTTAATCTTAAGCA+AGG | + | chr1_1:29621308-29621327 | None:intergenic | 30.0% | |
| AAGAATGAGTGAAAATGTGA+TGG | + | chr1_1:29621747-29621766 | None:intergenic | 30.0% | |
| GCTTAATGTTGTATAATGTG+TGG | - | chr1_1:29621981-29622000 | Msa0017730:five_prime_UTR | 30.0% | |
| ATGTAGCGTTGTGTTAATTG+AGG | + | chr1_1:29615777-29615796 | None:intergenic | 35.0% | |
| TCTACACAGATCAATCATCA+TGG | - | chr1_1:29615819-29615838 | Msa0017730:three_prime_UTR | 35.0% | |
| ! | GATTGATAACAGAAAGAGAG+AGG | - | chr1_1:29615988-29616007 | Msa0017730:three_prime_UTR | 35.0% |
| AATTGTACGAGAATTGGTTG+AGG | - | chr1_1:29616175-29616194 | Msa0017730:CDS | 35.0% | |
| TTCCACAGTTTACATTTGCA+GGG | + | chr1_1:29616317-29616336 | None:intergenic | 35.0% | |
| ATTCCACAGTTTACATTTGC+AGG | + | chr1_1:29616318-29616337 | None:intergenic | 35.0% | |
| TTCTCTCCAAATGTAAACTG+TGG | - | chr1_1:29616840-29616859 | Msa0017730:CDS | 35.0% | |
| TGCATTCCACAGTTTACATT+TGG | + | chr1_1:29616849-29616868 | None:intergenic | 35.0% | |
| !! | ATAACAGGAAAAGCATCAGA+TGG | + | chr1_1:29617263-29617282 | None:intergenic | 35.0% |
| !!! | TGTACCTCTTTTGGTTTTCA+TGG | - | chr1_1:29617367-29617386 | Msa0017730:intron | 35.0% |
| TTCTCCATGAAAACCAAAAG+AGG | + | chr1_1:29617306-29617325 | None:intergenic | 35.0% | |
| AGCTGGTTATGAATGTTCTT+TGG | - | chr1_1:29617457-29617476 | Msa0017730:intron | 35.0% | |
| GAATGTTCTTTGGACAAGAT+TGG | - | chr1_1:29617467-29617486 | Msa0017730:intron | 35.0% | |
| ! | AAGATTGGTTGAAACTGGAA+AGG | - | chr1_1:29617482-29617501 | Msa0017730:intron | 35.0% |
| AGGCTCAACATATTCAAAAC+TGG | + | chr1_1:29617847-29617866 | None:intergenic | 35.0% | |
| CAAATTTGACCTACTTGTCA+CGG | + | chr1_1:29617977-29617996 | None:intergenic | 35.0% | |
| GGTAAACTAAGCCACTATTA+TGG | - | chr1_1:29618023-29618042 | Msa0017730:intron | 35.0% | |
| ! | ATTTGCTGAGACCATAATAG+TGG | + | chr1_1:29618037-29618056 | None:intergenic | 35.0% |
| ! | TATGTTGGTGTTTCATCTAG+TGG | - | chr1_1:29618094-29618113 | Msa0017730:intron | 35.0% |
| AGTGGAATCACATACAAATC+CGG | - | chr1_1:29618112-29618131 | Msa0017730:intron | 35.0% | |
| GATAGGTTTAGTGATAGCTA+CGG | - | chr1_1:29618193-29618212 | Msa0017730:intron | 35.0% | |
| AAAGTGGACAAAGATTACTC+AGG | - | chr1_1:29618241-29618260 | Msa0017730:intron | 35.0% | |
| GAAGAGAACTCCTTCAAAAA+AGG | - | chr1_1:29618295-29618314 | Msa0017730:CDS | 35.0% | |
| CAGTAGTTCCATACTATAGT+TGG | - | chr1_1:29618377-29618396 | Msa0017730:intron | 35.0% | |
| ! | TTTTGCCATACCTAATCCTT+CGG | - | chr1_1:29618404-29618423 | Msa0017730:intron | 35.0% |
| ATTCAAACTTCCGAAGGATT+AGG | + | chr1_1:29618417-29618436 | None:intergenic | 35.0% | |
| TAGACATACAGTAGCGAATA+AGG | + | chr1_1:29618498-29618517 | None:intergenic | 35.0% | |
| !!! | TTTTTTTCCAATGGTGTCCA+AGG | + | chr1_1:29618765-29618784 | None:intergenic | 35.0% |
| CATATAGTTGTATCATGCAC+AGG | + | chr1_1:29619053-29619072 | None:intergenic | 35.0% | |
| TACAACTATATGCTCATCAC+TGG | - | chr1_1:29619061-29619080 | Msa0017730:intron | 35.0% | |
| !! | TAAGCAGGAGTTTTGGTAAA+TGG | - | chr1_1:29619183-29619202 | Msa0017730:intron | 35.0% |
| !! | TTTGATGATTTTGATCCGAG+AGG | - | chr1_1:29619453-29619472 | Msa0017730:CDS | 35.0% |
| TTACTAGTAGATGTTCCTCT+CGG | + | chr1_1:29619471-29619490 | None:intergenic | 35.0% | |
| ! | TCTTTTTACTGTTTTGTGCG+TGG | - | chr1_1:29619555-29619574 | Msa0017730:CDS | 35.0% |
| TGCTAATGAAGTTTAACCTG+TGG | + | chr1_1:29619956-29619975 | None:intergenic | 35.0% | |
| CCATTAAACAGGTGAGTAAT+TGG | + | chr1_1:29620016-29620035 | None:intergenic | 35.0% | |
| CCAATTACTCACCTGTTTAA+TGG | - | chr1_1:29620013-29620032 | Msa0017730:intron | 35.0% | |
| CCAATGAAGGTGGAAATTTA+AGG | + | chr1_1:29620072-29620091 | None:intergenic | 35.0% | |
| CCTTAAATTTCCACCTTCAT+TGG | - | chr1_1:29620069-29620088 | Msa0017730:CDS | 35.0% | |
| !!! | CTGAACTAGTATTTTGAGAC+TGG | - | chr1_1:29620196-29620215 | Msa0017730:intron | 35.0% |
| !!! | TTTTGAGACTGGAATTGTCT+TGG | - | chr1_1:29620207-29620226 | Msa0017730:intron | 35.0% |
| ACAAGATATTACGTCGTTGT+TGG | - | chr1_1:29620522-29620541 | Msa0017730:CDS | 35.0% | |
| GTGGAGAAAGAAGATTAAAC+AGG | + | chr1_1:29620603-29620622 | None:intergenic | 35.0% | |
| TAGCACTGTGAATGAAAATG+TGG | + | chr1_1:29620622-29620641 | None:intergenic | 35.0% | |
| !! | TCAAAAGTGCTGTTATTCAC+AGG | + | chr1_1:29620798-29620817 | None:intergenic | 35.0% |
| TTAAGTGGAACAGAAGCAAA+GGG | + | chr1_1:29620822-29620841 | None:intergenic | 35.0% | |
| ATTAAGTGGAACAGAAGCAA+AGG | + | chr1_1:29620823-29620842 | None:intergenic | 35.0% | |
| ! | TTTGAGGGATCTGATGTTTT+TGG | - | chr1_1:29620846-29620865 | Msa0017730:intron | 35.0% |
| TTTACCACTTGTACTACCAT+CGG | + | chr1_1:29620928-29620947 | None:intergenic | 35.0% | |
| TATTGAGGTCAATCAATCCA+CGG | + | chr1_1:29621028-29621047 | None:intergenic | 35.0% | |
| ACTTACGAGCAGATATATTG+AGG | + | chr1_1:29621043-29621062 | None:intergenic | 35.0% | |
| !!! | TTTTTCGGGTGAAAACATAC+AGG | + | chr1_1:29621141-29621160 | None:intergenic | 35.0% |
| !!! | TGCAGTTACATGCTTTTTTC+GGG | + | chr1_1:29621155-29621174 | None:intergenic | 35.0% |
| !! | TATTTAGGGTTTTGGCCTTT+TGG | - | chr1_1:29621228-29621247 | Msa0017730:intron | 35.0% |
| !! | ATTTAGGGTTTTGGCCTTTT+GGG | - | chr1_1:29621229-29621248 | Msa0017730:intron | 35.0% |
| ACACAAGATTGAATCCCAAA+AGG | + | chr1_1:29621246-29621265 | None:intergenic | 35.0% | |
| AAGTACATGAATTTGGTAGG+AGG | - | chr1_1:29621319-29621338 | Msa0017730:intron | 35.0% | |
| !!! | ATCGACAAGGGATACTTTTT+TGG | + | chr1_1:29621497-29621516 | None:intergenic | 35.0% |
| GGATTAGATGAAAGAGAGAA+AGG | - | chr1_1:29621544-29621563 | Msa0017730:intron | 35.0% | |
| CCATGTATAATGTAGTTGGA+GGG | + | chr1_1:29621570-29621589 | None:intergenic | 35.0% | |
| CCTCCAACTACATTATACAT+GGG | - | chr1_1:29621568-29621587 | Msa0017730:intron | 35.0% | |
| CTCCAACTACATTATACATG+GGG | - | chr1_1:29621569-29621588 | Msa0017730:intron | 35.0% | |
| AGCCAAAACTATCAATTTGG+TGG | - | chr1_1:29621682-29621701 | Msa0017730:intron | 35.0% | |
| GCCAAAACTATCAATTTGGT+GGG | - | chr1_1:29621683-29621702 | Msa0017730:intron | 35.0% | |
| !! | ACCCACCAAATTGATAGTTT+TGG | + | chr1_1:29621687-29621706 | None:intergenic | 35.0% |
| TTCACTCATTCTTTGTGTGT+CGG | - | chr1_1:29621754-29621773 | Msa0017730:intron | 35.0% | |
| ! | ATCAAGATTGCTGAGCTTTT+TGG | - | chr1_1:29621781-29621800 | Msa0017730:intron | 35.0% |
| ! | CACTATTTTGTACCCAAGAA+AGG | - | chr1_1:29621833-29621852 | Msa0017730:intron | 35.0% |
| ! | ATTTTGTACCCAAGAAAGGT+AGG | - | chr1_1:29621837-29621856 | Msa0017730:intron | 35.0% |
| ! | TTGCTATTCCTACCTTTCTT+GGG | + | chr1_1:29621848-29621867 | None:intergenic | 35.0% |
| AATGAATAAGACCGGAACAA+AGG | + | chr1_1:29622020-29622039 | None:intergenic | 35.0% | |
| TGTGTAGATCTGATCTGAAG+GGG | + | chr1_1:29615807-29615826 | None:intergenic | 40.0% | |
| CTGTGTAGATCTGATCTGAA+GGG | + | chr1_1:29615808-29615827 | None:intergenic | 40.0% | |
| TCTGTGTAGATCTGATCTGA+AGG | + | chr1_1:29615809-29615828 | None:intergenic | 40.0% | |
| AAAGAGAGAGGTGAATCTGA+AGG | - | chr1_1:29616000-29616019 | Msa0017730:three_prime_UTR | 40.0% | |
| TTCACCTTCTGTTCGATTTC+AGG | + | chr1_1:29616037-29616056 | None:intergenic | 40.0% | |
| ACAGTTTACATTTGCAGGGA+AGG | + | chr1_1:29616313-29616332 | None:intergenic | 40.0% | |
| TTCCCTGCAAATGTAAACTG+TGG | - | chr1_1:29616312-29616331 | Msa0017730:intron | 40.0% | |
| AGCATCCATCGTAGAAAAGA+TGG | - | chr1_1:29616425-29616444 | Msa0017730:intron | 40.0% | |
| ATCCATCGTAGAAAAGATGG+TGG | - | chr1_1:29616428-29616447 | Msa0017730:intron | 40.0% | |
| ! | TTCCACCATCTTTTCTACGA+TGG | + | chr1_1:29616433-29616452 | None:intergenic | 40.0% |
| !! | GATGGTGGAAACTCAACTTA+CGG | - | chr1_1:29616443-29616462 | Msa0017730:intron | 40.0% |
| ! | ATGGTGGAAACTCAACTTAC+GGG | - | chr1_1:29616444-29616463 | Msa0017730:intron | 40.0% |
| AAAGAGAGGAGATTAGATGG+AGG | - | chr1_1:29616506-29616525 | Msa0017730:intron | 40.0% | |
| AAGAGAGGAGATTAGATGGA+GGG | - | chr1_1:29616507-29616526 | Msa0017730:intron | 40.0% | |
| AACTCCTCTTAGTGGGATTA+GGG | - | chr1_1:29616647-29616666 | Msa0017730:intron | 40.0% | |
| ! | ATGCAACTGATGATGAACCT+TGG | - | chr1_1:29617179-29617198 | Msa0017730:intron | 40.0% |
| ! | TGCAACTGATGATGAACCTT+GGG | - | chr1_1:29617180-29617199 | Msa0017730:intron | 40.0% |
| ! | TGCTTCTTCTGTACCTCTTT+TGG | - | chr1_1:29617358-29617377 | Msa0017730:intron | 40.0% |
| ! | AGCTGACATTCAGTACTGAA+AGG | + | chr1_1:29617441-29617460 | None:intergenic | 40.0% |
| ! | TTTCAGTACTGAATGTCAGC+TGG | - | chr1_1:29617440-29617459 | Msa0017730:intron | 40.0% |
| ! | TGGACAAGATTGGTTGAAAC+TGG | - | chr1_1:29617477-29617496 | Msa0017730:intron | 40.0% |
| TGGTTGAAACTGGAAAGGAT+TGG | - | chr1_1:29617487-29617506 | Msa0017730:intron | 40.0% | |
| ! | GGATTGGCGATATGTATACA+AGG | - | chr1_1:29617503-29617522 | Msa0017730:intron | 40.0% |
| TGCCTGACGTCAAATAGAAA+GGG | + | chr1_1:29617622-29617641 | None:intergenic | 40.0% | |
| ATGCCTGACGTCAAATAGAA+AGG | + | chr1_1:29617623-29617642 | None:intergenic | 40.0% | |
| ATATGTTGAGCCTAATGGGA+AGG | - | chr1_1:29617854-29617873 | Msa0017730:CDS | 40.0% | |
| GTGGAATCACATACAAATCC+GGG | - | chr1_1:29618113-29618132 | Msa0017730:intron | 40.0% | |
| ACTACTAAATGAGGTTGTCC+CGG | + | chr1_1:29618134-29618153 | None:intergenic | 40.0% | |
| GGACAACCTCATTTAGTAGT+GGG | - | chr1_1:29618134-29618153 | Msa0017730:intron | 40.0% | |
| AGTGGGAGCAGTAACAAATA+TGG | - | chr1_1:29618151-29618170 | Msa0017730:intron | 40.0% | |
| !!! | TATGGAGGTTTTGGTTCAAG+TGG | - | chr1_1:29618169-29618188 | Msa0017730:intron | 40.0% |
| !!! | GTTTTGGTTCAAGTGGTGAT+AGG | - | chr1_1:29618176-29618195 | Msa0017730:intron | 40.0% |
| ! | CAGTTTTACTTGAGACACCA+TGG | + | chr1_1:29618276-29618295 | None:intergenic | 40.0% |
| CCTTCAAAAAAGGTTCTGCA+CGG | - | chr1_1:29618305-29618324 | Msa0017730:CDS | 40.0% | |
| AACTTCCGAAGGATTAGGTA+TGG | + | chr1_1:29618412-29618431 | None:intergenic | 40.0% | |
| CTTCAGATTCAAACTTCCGA+AGG | + | chr1_1:29618423-29618442 | None:intergenic | 40.0% | |
| CAAGAGACTGCATGGAAATA+TGG | + | chr1_1:29618677-29618696 | None:intergenic | 40.0% | |
| TTCTTTACCTTGGACACCAT+TGG | - | chr1_1:29618755-29618774 | Msa0017730:intron | 40.0% | |
| GCCTTTAACTAGTCAAAGAC+AGG | - | chr1_1:29619024-29619043 | Msa0017730:intron | 40.0% | |
| ! | GCCTGTCTTTGACTAGTTAA+AGG | + | chr1_1:29619028-29619047 | None:intergenic | 40.0% |
| AAGGATCAAAGGTTTGAGTC+TGG | + | chr1_1:29619095-29619114 | None:intergenic | 40.0% | |
| CAATGAGGATCAAGGATCAA+AGG | + | chr1_1:29619106-29619125 | None:intergenic | 40.0% | |
| ! | CTTTTTACTTGCACCTGCTT+TGG | - | chr1_1:29619237-29619256 | Msa0017730:intron | 40.0% |
| CTGTGCATAAAAACCAAAGC+AGG | + | chr1_1:29619253-29619272 | None:intergenic | 40.0% | |
| AGAATCATTGCAGTATGGAG+AGG | + | chr1_1:29619293-29619312 | None:intergenic | 40.0% | |
| CCTTGGAGTTGTAATACTCA+AGG | + | chr1_1:29619635-29619654 | None:intergenic | 40.0% | |
| CCTTGAGTATTACAACTCCA+AGG | - | chr1_1:29619632-29619651 | Msa0017730:CDS | 40.0% | |
| !! | TCAAACCAGGTTGATCTCTT+TGG | - | chr1_1:29619782-29619801 | Msa0017730:CDS | 40.0% |
| ! | CTCTTTGGACAAGATTTGCT+CGG | - | chr1_1:29619797-29619816 | Msa0017730:CDS | 40.0% |
| GGAGATTCATGCCATTAAAC+AGG | + | chr1_1:29620027-29620046 | None:intergenic | 40.0% | |
| !!! | TACTTTTGGAGCACCAATGA+AGG | + | chr1_1:29620085-29620104 | None:intergenic | 40.0% |
| GGGTGTATTAATTGCATGTG+AGG | - | chr1_1:29620271-29620290 | Msa0017730:CDS | 40.0% | |
| ACAAAGACTAGACTAGATGG+AGG | - | chr1_1:29620390-29620409 | Msa0017730:intron | 40.0% | |
| AGTCCAGTAGTTGAAGATAG+AGG | - | chr1_1:29620422-29620441 | Msa0017730:intron | 40.0% | |
| TCTCCTCTATCTTCAACTAC+TGG | + | chr1_1:29620428-29620447 | None:intergenic | 40.0% | |
| ACGTCGTTGTTGGATTTATG+CGG | - | chr1_1:29620532-29620551 | Msa0017730:CDS | 40.0% | |
| !! | ATCTTGTTGATTCCATGCTC+AGG | - | chr1_1:29620659-29620678 | Msa0017730:intron | 40.0% |
| GTTGGTGTAACTGAAGGAAT+GGG | + | chr1_1:29620711-29620730 | None:intergenic | 40.0% | |
| TGTTGGTGTAACTGAAGGAA+TGG | + | chr1_1:29620712-29620731 | None:intergenic | 40.0% | |
| TCAACTGTTGGTGTAACTGA+AGG | + | chr1_1:29620717-29620736 | None:intergenic | 40.0% | |
| ! | GTCTAAAAAGGACGCTTTTC+AGG | - | chr1_1:29620971-29620990 | Msa0017730:intron | 40.0% |
| ACACAGAACGTATTATGCAG+TGG | + | chr1_1:29621094-29621113 | None:intergenic | 40.0% | |
| GGATTCAATCTTGTGTTCCA+GGG | - | chr1_1:29621250-29621269 | Msa0017730:intron | 40.0% | |
| TGAATTTGGTAGGAGGTTCT+TGG | - | chr1_1:29621326-29621345 | Msa0017730:intron | 40.0% | |
| ! | AAAGTATCCCTTGTCGATGT+TGG | - | chr1_1:29621499-29621518 | Msa0017730:intron | 40.0% |
| CACAATTCCAACATCGACAA+GGG | + | chr1_1:29621509-29621528 | None:intergenic | 40.0% | |
| CTTGTCGATGTTGGAATTGT+GGG | - | chr1_1:29621508-29621527 | Msa0017730:intron | 40.0% | |
| CCCTCCAACTACATTATACA+TGG | - | chr1_1:29621567-29621586 | Msa0017730:intron | 40.0% | |
| CCCATGTATAATGTAGTTGG+AGG | + | chr1_1:29621571-29621590 | None:intergenic | 40.0% | |
| CTCCCCATGTATAATGTAGT+TGG | + | chr1_1:29621574-29621593 | None:intergenic | 40.0% | |
| ATTATACATGGGGAGAGCTA+TGG | - | chr1_1:29621579-29621598 | Msa0017730:intron | 40.0% | |
| TTATACATGGGGAGAGCTAT+GGG | - | chr1_1:29621580-29621599 | Msa0017730:intron | 40.0% | |
| GGCAGCCAAAACTATCAATT+TGG | - | chr1_1:29621679-29621698 | Msa0017730:intron | 40.0% | |
| !! | CTTGCTATTCCTACCTTTCT+TGG | + | chr1_1:29621849-29621868 | None:intergenic | 40.0% |
| ! | ATTTGAGTACTGCAGTTTGC+TGG | + | chr1_1:29621948-29621967 | None:intergenic | 40.0% |
| AATAAGACCGGAACAAAGGA+AGG | + | chr1_1:29622016-29622035 | None:intergenic | 40.0% | |
| AGATCTGATCTGAAGGGGAA+AGG | + | chr1_1:29615802-29615821 | None:intergenic | 45.0% | |
| !! | GGTGAATCTGAAGGTGCTTA+AGG | - | chr1_1:29616009-29616028 | Msa0017730:three_prime_UTR | 45.0% |
| GGTTCCTGAAATCGAACAGA+AGG | - | chr1_1:29616030-29616049 | Msa0017730:CDS | 45.0% | |
| AGGATGTTGCGTTGAATGTG+TGG | - | chr1_1:29616352-29616371 | Msa0017730:intron | 45.0% | |
| GTGGTGATACTAGACGAGAT+AGG | - | chr1_1:29616371-29616390 | Msa0017730:intron | 45.0% | |
| TGGTGGAAACTCAACTTACG+GGG | - | chr1_1:29616445-29616464 | Msa0017730:intron | 45.0% | |
| CTATACGCCGAAAGAGACAT+AGG | - | chr1_1:29616541-29616560 | Msa0017730:intron | 45.0% | |
| ACTAAGAGGAGTTGGCAACA+TGG | + | chr1_1:29616640-29616659 | None:intergenic | 45.0% | |
| ATGTTGCCAACTCCTCTTAG+TGG | - | chr1_1:29616639-29616658 | Msa0017730:intron | 45.0% | |
| TGTTGCCAACTCCTCTTAGT+GGG | - | chr1_1:29616640-29616659 | Msa0017730:intron | 45.0% | |
| CTAATCCCACTAAGAGGAGT+TGG | + | chr1_1:29616648-29616667 | None:intergenic | 45.0% | |
| CAACTCCTCTTAGTGGGATT+AGG | - | chr1_1:29616646-29616665 | Msa0017730:intron | 45.0% | |
| CAAATCCAACCACTTTGCCA+AGG | - | chr1_1:29616960-29616979 | Msa0017730:CDS | 45.0% | |
| ! | CAGATTGTGAGGTACTAGCA+TGG | + | chr1_1:29617103-29617122 | None:intergenic | 45.0% |
| CCTCACAATCTGCAATCCAT+CGG | - | chr1_1:29617111-29617130 | Msa0017730:intron | 45.0% | |
| ! | GCAACTGATGATGAACCTTG+GGG | - | chr1_1:29617181-29617200 | Msa0017730:intron | 45.0% |
| CTGACGTCAAATAGAAAGGG+AGG | + | chr1_1:29617619-29617638 | None:intergenic | 45.0% | |
| CTCCCTTTCTATTTGACGTC+AGG | - | chr1_1:29617617-29617636 | Msa0017730:intron | 45.0% | |
| AGGATGTGGGACTCAATGTA+AGG | - | chr1_1:29617874-29617893 | Msa0017730:CDS | 45.0% | |
| GGGACTCAATGTAAGGAAGA+AGG | - | chr1_1:29617881-29617900 | Msa0017730:CDS | 45.0% | |
| GGGACAACCTCATTTAGTAG+TGG | - | chr1_1:29618133-29618152 | Msa0017730:intron | 45.0% | |
| ACTGCTCCCACTACTAAATG+AGG | + | chr1_1:29618143-29618162 | None:intergenic | 45.0% | |
| GGGAGCAGTAACAAATATGG+AGG | - | chr1_1:29618154-29618173 | Msa0017730:intron | 45.0% | |
| TAGTGATAGCTACGGAGACA+AGG | - | chr1_1:29618201-29618220 | Msa0017730:intron | 45.0% | |
| AGTGATAGCTACGGAGACAA+GGG | - | chr1_1:29618202-29618221 | Msa0017730:intron | 45.0% | |
| GCGCTATGATGAAGCAAAAG+TGG | - | chr1_1:29618225-29618244 | Msa0017730:intron | 45.0% | |
| TACTCAGGAAAATCACGCCA+TGG | - | chr1_1:29618256-29618275 | Msa0017730:intron | 45.0% | |
| !!! | CCGTGCAGAACCTTTTTTGA+AGG | + | chr1_1:29618308-29618327 | None:intergenic | 45.0% |
| CAGGTATGGCGTGCAAATAA+TGG | - | chr1_1:29618333-29618352 | Msa0017730:CDS | 45.0% | |
| ACTAGTGAAGCCGTTTACCA+AGG | - | chr1_1:29618538-29618557 | Msa0017730:intron | 45.0% | |
| TATGCAGACAAGAGACTGCA+TGG | + | chr1_1:29618685-29618704 | None:intergenic | 45.0% | |
| GAACTAGGCAATGAGGATCA+AGG | + | chr1_1:29619114-29619133 | None:intergenic | 45.0% | |
| ! | GCTTGTTGAACTAGGCAATG+AGG | + | chr1_1:29619121-29619140 | None:intergenic | 45.0% |
| TCTTCCTTGCAGCAAAAGTC+AGG | - | chr1_1:29619344-29619363 | Msa0017730:intron | 45.0% | |
| ! | TTCTCCTGACTTTTGCTGCA+AGG | + | chr1_1:29619351-29619370 | None:intergenic | 45.0% |
| ! | GGTACACTTGCACTTTGAGA+AGG | + | chr1_1:29619420-29619439 | None:intergenic | 45.0% |
| AAGTGCAAGTGTACCTACTG+AGG | - | chr1_1:29619425-29619444 | Msa0017730:CDS | 45.0% | |
| TCATCAAAGTCGTCCTCAGT+AGG | + | chr1_1:29619441-29619460 | None:intergenic | 45.0% | |
| CTTCAAACAGAGACTTCAGC+TGG | - | chr1_1:29619755-29619774 | Msa0017730:intron | 45.0% | |
| TTCAGCTGGAATCTCAAACC+AGG | - | chr1_1:29619769-29619788 | Msa0017730:CDS | 45.0% | |
| CTTGTCCAAAGAGATCAACC+TGG | + | chr1_1:29619790-29619809 | None:intergenic | 45.0% | |
| ! | AGATTTGCTCGGTGACTTCA+TGG | - | chr1_1:29619808-29619827 | Msa0017730:CDS | 45.0% |
| ! | GTCAGAGGTTGATCTCTTTG+CGG | - | chr1_1:29619877-29619896 | Msa0017730:CDS | 45.0% |
| TGGCATGAATCTCCGTCATT+AGG | - | chr1_1:29620033-29620052 | Msa0017730:CDS | 45.0% | |
| !!! | TTTTGGAGCACCAATGAAGG+TGG | + | chr1_1:29620082-29620101 | None:intergenic | 45.0% |
| TGAGACTGGAATTGTCTTGG+AGG | - | chr1_1:29620210-29620229 | Msa0017730:intron | 45.0% | |
| AGACTAGACTAGATGGAGGA+TGG | - | chr1_1:29620394-29620413 | Msa0017730:intron | 45.0% | |
| ! | CAAATTTTCCCCCACTAGGT+GGG | + | chr1_1:29620563-29620582 | None:intergenic | 45.0% |
| ! | CAACCAAATTTTCCCCCACT+AGG | + | chr1_1:29620567-29620586 | None:intergenic | 45.0% |
| ATTCCATGCTCAGGATGAAG+TGG | - | chr1_1:29620668-29620687 | Msa0017730:intron | 45.0% | |
| TTCAGGTGAAGTCTGGCATT+TGG | - | chr1_1:29620988-29621007 | Msa0017730:intron | 45.0% | |
| TCAGGTGAAGTCTGGCATTT+GGG | - | chr1_1:29620989-29621008 | Msa0017730:intron | 45.0% | |
| GGGTGAAAACATACAGGTAC+AGG | + | chr1_1:29621135-29621154 | None:intergenic | 45.0% | |
| GGGATTCAATCTTGTGTTCC+AGG | - | chr1_1:29621249-29621268 | Msa0017730:intron | 45.0% | |
| ACATACAGGAGGAAACAACG+GGG | + | chr1_1:29621375-29621394 | None:intergenic | 45.0% | |
| CACATACAGGAGGAAACAAC+GGG | + | chr1_1:29621376-29621395 | None:intergenic | 45.0% | |
| GCACATACAGGAGGAAACAA+CGG | + | chr1_1:29621377-29621396 | None:intergenic | 45.0% | |
| ! | ACTCGTGATAGTGCACATAC+AGG | + | chr1_1:29621389-29621408 | None:intergenic | 45.0% |
| CCACAATTCCAACATCGACA+AGG | + | chr1_1:29621510-29621529 | None:intergenic | 45.0% | |
| CCTTGTCGATGTTGGAATTG+TGG | - | chr1_1:29621507-29621526 | Msa0017730:intron | 45.0% | |
| !! | GGATCTGGTCTTGGTATGTA+TGG | - | chr1_1:29621607-29621626 | Msa0017730:intron | 45.0% |
| !! | TCTGGTCTTGGTATGTATGG+TGG | - | chr1_1:29621610-29621629 | Msa0017730:intron | 45.0% |
| !! | GATTGCTGAGCTTTTTGGCA+TGG | - | chr1_1:29621786-29621805 | Msa0017730:intron | 45.0% |
| !! | AAAAAAAAATTACAATTAAT+AGG | + | chr1_1:29619731-29619750 | None:intergenic | 5.0% |
| CCAACCCTAATCCCACTAAG+AGG | + | chr1_1:29616654-29616673 | None:intergenic | 50.0% | |
| CCTCTTAGTGGGATTAGGGT+TGG | - | chr1_1:29616651-29616670 | Msa0017730:intron | 50.0% | |
| GAAAAGGAGCCTTGGCAAAG+TGG | + | chr1_1:29616972-29616991 | None:intergenic | 50.0% | |
| !! | CCGATGGATTGCAGATTGTG+AGG | + | chr1_1:29617114-29617133 | None:intergenic | 50.0% |
| ! | TGTGCTGGCAGAGATTGCAA+CGG | - | chr1_1:29617216-29617235 | Msa0017730:intron | 50.0% |
| TGAGCCTAATGGGAAGGATG+TGG | - | chr1_1:29617860-29617879 | Msa0017730:CDS | 50.0% | |
| GAGCCTAATGGGAAGGATGT+GGG | - | chr1_1:29617861-29617880 | Msa0017730:CDS | 50.0% | |
| AGTCCCACATCCTTCCCATT+AGG | + | chr1_1:29617867-29617886 | None:intergenic | 50.0% | |
| TGCTGCAAACCGTGACAAGT+AGG | - | chr1_1:29617965-29617984 | Msa0017730:intron | 50.0% | |
| GTGATAGCTACGGAGACAAG+GGG | - | chr1_1:29618203-29618222 | Msa0017730:intron | 50.0% | |
| TTGCTGCAAGGAAGACACTC+TGG | + | chr1_1:29619339-29619358 | None:intergenic | 50.0% | |
| CTCCAAGGCCGCCAAAAAAA+CGG | - | chr1_1:29619647-29619666 | Msa0017730:intron | 50.0% | |
| !!! | TTCCGTTTTTTTGGCGGCCT+TGG | + | chr1_1:29619652-29619671 | None:intergenic | 50.0% |
| TCTGACGCATCACTAGTTGC+TGG | + | chr1_1:29619863-29619882 | None:intergenic | 50.0% | |
| AGCAACTAGTGATGCGTCAG+AGG | - | chr1_1:29619862-29619881 | Msa0017730:CDS | 50.0% | |
| TGTATCAGCAGCACCACATG+CGG | - | chr1_1:29619910-29619929 | Msa0017730:intron | 50.0% | |
| ! | AGGAGCTAGTTCTCAACCAC+AGG | - | chr1_1:29619937-29619956 | Msa0017730:intron | 50.0% |
| CTAGACTAGATGGAGGATGG+TGG | - | chr1_1:29620397-29620416 | Msa0017730:intron | 50.0% | |
| ! | CCAAATTTTCCCCCACTAGG+TGG | + | chr1_1:29620564-29620583 | None:intergenic | 50.0% |
| CCACCTAGTGGGGGAAAATT+TGG | - | chr1_1:29620561-29620580 | Msa0017730:intron | 50.0% | |
| GATCCACTTCATCCTGAGCA+TGG | + | chr1_1:29620674-29620693 | None:intergenic | 50.0% | |
| !!! | GAGTTTTCCGACTTGCTGTC+AGG | + | chr1_1:29620771-29620790 | None:intergenic | 50.0% |
| TCGGTGGCAGCATTAGTTGA+GGG | + | chr1_1:29620909-29620928 | None:intergenic | 50.0% | |
| ATCGGTGGCAGCATTAGTTG+AGG | + | chr1_1:29620910-29620929 | None:intergenic | 50.0% | |
| TCAACTAATGCTGCCACCGA+TGG | - | chr1_1:29620909-29620928 | Msa0017730:intron | 50.0% | |
| ACCACTTGTACTACCATCGG+TGG | + | chr1_1:29620925-29620944 | None:intergenic | 50.0% | |
| !!! | GACGCTTTTCAGGTGAAGTC+TGG | - | chr1_1:29620981-29621000 | Msa0017730:intron | 50.0% |
| ! | CGTGATAGTGCACATACAGG+AGG | + | chr1_1:29621386-29621405 | None:intergenic | 50.0% |
| GTCGATGTTGGAATTGTGGG+TGG | - | chr1_1:29621511-29621530 | Msa0017730:intron | 50.0% | |
| !! | ATTGTGGGTGGACTAAGCGA+TGG | - | chr1_1:29621523-29621542 | Msa0017730:intron | 50.0% |
| AGAGCTATGGGTACAGGATC+TGG | - | chr1_1:29621592-29621611 | Msa0017730:intron | 50.0% | |
| ATGGGTACAGGATCTGGTCT+TGG | - | chr1_1:29621598-29621617 | Msa0017730:intron | 50.0% | |
| ACTCCTTCACAGTCAACAGC+TGG | - | chr1_1:29621634-29621653 | Msa0017730:intron | 50.0% | |
| ! | TCTCCAGCTGTTGACTGTGA+AGG | + | chr1_1:29621640-29621659 | None:intergenic | 50.0% |
| !! | TGCTGAGCTTTTTGGCATGG+TGG | - | chr1_1:29621789-29621808 | Msa0017730:intron | 50.0% |
| GCCTTGACCTTCCTTTGTTC+CGG | - | chr1_1:29622006-29622025 | Msa0017730:five_prime_UTR | 50.0% | |
| ACCGGAACAAAGGAAGGTCA+AGG | + | chr1_1:29622010-29622029 | None:intergenic | 50.0% | |
| AGGAGCCTTGGCAAAGTGGT+TGG | + | chr1_1:29616968-29616987 | None:intergenic | 55.0% | |
| GATGAACCTTGGGGTCCTCA+TGG | - | chr1_1:29617190-29617209 | Msa0017730:intron | 55.0% | |
| ACAGTACCATGAGGACCCCA+AGG | + | chr1_1:29617199-29617218 | None:intergenic | 55.0% | |
| TCTGCCAGCACAGTACCATG+AGG | + | chr1_1:29617208-29617227 | None:intergenic | 55.0% | |
| AAGGTTCTGCACGGTCTGTC+AGG | - | chr1_1:29618314-29618333 | Msa0017730:CDS | 55.0% | |
| TCTGCACGGTCTGTCAGGTA+TGG | - | chr1_1:29618319-29618338 | Msa0017730:CDS | 55.0% | |
| CTAGCTCCTTTGTCCGCATG+TGG | + | chr1_1:29619926-29619945 | None:intergenic | 55.0% | |
| TGTGCAGCCTGACAGCAAGT+CGG | - | chr1_1:29620761-29620780 | Msa0017730:intron | 55.0% | |
| GCCACCGATGGTAGTACAAG+TGG | - | chr1_1:29620921-29620940 | Msa0017730:intron | 55.0% | |
| TACAGGAGGAAACAACGGGG+AGG | + | chr1_1:29621372-29621391 | None:intergenic | 55.0% | |
| ATGGGGAGAGCTATGGGTAC+AGG | - | chr1_1:29621586-29621605 | Msa0017730:intron | 55.0% | |
| GGGTCCTCATGGTACTGTGC+TGG | - | chr1_1:29617201-29617220 | Msa0017730:intron | 60.0% | |
| GCAGCACCACATGCGGACAA+AGG | - | chr1_1:29619917-29619936 | Msa0017730:intron | 60.0% | |
| ATGCGGTCGAACCCACCTAG+TGG | - | chr1_1:29620549-29620568 | Msa0017730:CDS | 60.0% | |
| TGCGGTCGAACCCACCTAGT+GGG | - | chr1_1:29620550-29620569 | Msa0017730:CDS | 60.0% | |
| TTGCTGTCAGGCTGCACAGC+TGG | + | chr1_1:29620759-29620778 | None:intergenic | 60.0% | |
| !! | TGGGCTGATTCGCTAAGCCG+TGG | - | chr1_1:29621008-29621027 | Msa0017730:intron | 60.0% |
| AGGAGGAAACAACGGGGAGG+TGG | + | chr1_1:29621369-29621388 | None:intergenic | 60.0% | |
| GCGGTCGAACCCACCTAGTG+GGG | - | chr1_1:29620551-29620570 | Msa0017730:CDS | 65.0% | |
| CGGTCGAACCCACCTAGTGG+GGG | - | chr1_1:29620552-29620571 | Msa0017730:CDS | 65.0% | |
| TCAGGCTGCACAGCTGGTGC+AGG | + | chr1_1:29620753-29620772 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29615693 | 29622054 | 29615693 | ID=Msa0017730;Name=Msa0017730 |
| chr1_1 | mRNA | 29615693 | 29622054 | 29615693 | ID=Msa0017730-mRNA-1;Parent=Msa0017730;Name=Msa0017730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=145|1|1|1|1|1|11|337|549 |
| chr1_1 | exon | 29615693 | 29616253 | 29615693 | ID=Msa0017730-mRNA-1:exon:9891;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29616691 | 29617066 | 29616691 | ID=Msa0017730-mRNA-1:exon:9890;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29617789 | 29617982 | 29617789 | ID=Msa0017730-mRNA-1:exon:9889;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29618261 | 29618391 | 29618261 | ID=Msa0017730-mRNA-1:exon:9888;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29619412 | 29619654 | 29619412 | ID=Msa0017730-mRNA-1:exon:9887;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29619765 | 29619910 | 29619765 | ID=Msa0017730-mRNA-1:exon:9886;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29620025 | 29620108 | 29620025 | ID=Msa0017730-mRNA-1:exon:9885;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29620223 | 29620301 | 29620223 | ID=Msa0017730-mRNA-1:exon:9884;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29620496 | 29620575 | 29620496 | ID=Msa0017730-mRNA-1:exon:9883;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29621696 | 29621747 | 29621696 | ID=Msa0017730-mRNA-1:exon:9882;Parent=Msa0017730-mRNA-1 |
| chr1_1 | exon | 29621869 | 29622054 | 29621869 | ID=Msa0017730-mRNA-1:exon:9881;Parent=Msa0017730-mRNA-1 |
| chr1_1 | five_prime_UTR | 29621910 | 29622054 | 29621910 | ID=Msa0017730-mRNA-1:five_prime_utr;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29621869 | 29621909 | 29621869 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29621696 | 29621747 | 29621696 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29620496 | 29620575 | 29620496 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29620223 | 29620301 | 29620223 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29620025 | 29620108 | 29620025 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29619765 | 29619910 | 29619765 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29619412 | 29619654 | 29619412 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29618261 | 29618391 | 29618261 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29617789 | 29617982 | 29617789 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29616691 | 29617066 | 29616691 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | CDS | 29616030 | 29616253 | 29616030 | ID=Msa0017730-mRNA-1:cds;Parent=Msa0017730-mRNA-1 |
| chr1_1 | three_prime_UTR | 29615693 | 29616029 | 29615693 | ID=Msa0017730-mRNA-1:three_prime_utr;Parent=Msa0017730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
