AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000910 MtrunA17_Chr7g0260601 97.009 702 20 1 1 702 1 701 0.0 1413
Msa0000910 MtrunA17_Chr4g0031821 72.429 700 141 7 2 689 107 766 0.0 984
Msa0000910 MtrunA17_Chr7g0248361 70.546 696 144 9 1 689 1 642 0.0 945
Msa0000910 MtrunA17_Chr6g0476861 70.864 683 140 7 14 689 16 646 0.0 936
Msa0000910 MtrunA17_Chr3g0094871 81.081 444 68 3 241 683 11 439 0.0 728
Msa0000910 MtrunA17_Chr1g0168321 70.968 465 95 2 157 621 83 507 0.0 662
Msa0000910 MtrunA17_Chr1g0168321 50.000 110 39 3 1 107 1 97 3.28e-18 88.6
Msa0000910 MtrunA17_Chr3g0143721 50.000 452 210 6 241 680 249 696 6.56e-147 444
Msa0000910 MtrunA17_Chr2g0297281 48.330 449 217 9 241 680 286 728 2.96e-135 416
Msa0000910 MtrunA17_Chr4g0052411 48.222 450 217 9 241 680 229 672 5.99e-134 410
Msa0000910 MtrunA17_Chr7g0217421 53.022 364 163 6 232 592 30 388 4.05e-126 380
Msa0000910 MtrunA17_Chr5g0429571 43.579 475 247 8 192 651 269 737 7.90e-115 363
Msa0000910 MtrunA17_Chr1g0158881 43.043 460 234 8 238 691 326 763 9.18e-112 355
Msa0000910 MtrunA17_Chr3g0135721 43.274 446 233 8 232 671 215 646 1.29e-110 350
Msa0000910 MtrunA17_Chr3g0104211 48.549 379 186 4 241 611 304 681 3.98e-110 351
Msa0000910 MtrunA17_Chr3g0135761 43.807 436 223 9 243 671 224 644 1.80e-108 344
Msa0000910 MtrunA17_Chr8g0362771 40.347 461 252 8 220 671 214 660 3.61e-107 342
Msa0000910 MtrunA17_Chr5g0432631 41.741 448 240 8 231 671 219 652 2.87e-105 340
Msa0000910 MtrunA17_Chr5g0432641 39.588 437 241 9 243 671 193 614 1.30e-91 298
Msa0000910 MtrunA17_Chr6g0456351 46.178 314 153 4 191 503 277 575 1.23e-83 276
Msa0000910 MtrunA17_Chr2g0331161 38.427 445 254 7 241 680 415 844 4.38e-80 273
Msa0000910 MtrunA17_Chr8g0388371 41.257 366 189 6 236 582 399 757 6.53e-76 262
Msa0000910 MtrunA17_Chr3g0129971 31.652 575 329 17 166 700 198 748 1.01e-66 235
Msa0000910 MtrunA17_Chr4g0050561 40.684 263 141 3 246 501 161 415 8.70e-58 201
Msa0000910 MtrunA17_Chr8g0392981 79.832 119 24 0 563 681 1 119 4.18e-57 189
Msa0000910 MtrunA17_Chr8g0345461 40.520 269 152 4 228 493 152 415 7.65e-57 199
Msa0000910 MtrunA17_Chr8g0392971 85.294 102 15 0 453 554 51 152 4.36e-55 185
Msa0000910 MtrunA17_Chr3g0135781 53.488 172 76 2 232 403 46 213 1.56e-54 186
Msa0000910 MtrunA17_Chr1g0200081 40.149 269 152 5 228 493 162 424 1.79e-54 193
Msa0000910 MtrunA17_Chr1g0182711 42.972 249 134 4 243 488 190 433 1.22e-52 188
Msa0000910 MtrunA17_Chr7g0262801 42.972 249 134 4 243 488 189 432 4.31e-52 187
Msa0000910 MtrunA17_Chr3g0145011 41.129 248 142 3 241 487 139 383 1.08e-51 184
Msa0000910 MtrunA17_Chr1g0192151 39.286 252 145 4 236 484 162 408 2.59e-51 184
Msa0000910 MtrunA17_Chr4g0014731 39.592 245 140 4 243 484 170 409 3.08e-51 184
Msa0000910 MtrunA17_Chr3g0141901 40.726 248 143 3 241 487 136 380 4.30e-51 182
Msa0000910 MtrunA17_Chr8g0357301 30.022 453 266 12 258 668 487 930 7.26e-51 191
Msa0000910 MtrunA17_Chr7g0255721 39.114 271 151 6 240 503 684 947 2.00e-49 186
Msa0000910 MtrunA17_Chr7g0255721 41.206 199 110 4 272 469 416 608 2.79e-30 127
Msa0000910 MtrunA17_Chr2g0327121 42.000 250 135 5 222 469 189 430 4.79e-49 184
Msa0000910 MtrunA17_Chr2g0327121 41.739 230 130 3 241 469 480 706 5.73e-47 178
Msa0000910 MtrunA17_Chr1g0180791 42.609 230 128 3 241 469 478 704 5.05e-49 184
Msa0000910 MtrunA17_Chr1g0180791 39.716 282 143 7 222 484 187 460 3.26e-48 182
Msa0000910 MtrunA17_Chr7g0264521 42.544 228 127 3 243 469 481 705 2.06e-48 182
Msa0000910 MtrunA17_Chr7g0264521 41.365 249 138 5 222 469 188 429 9.13e-47 177
Msa0000910 MtrunA17_Chr7g0255641 37.545 277 159 6 240 509 657 926 5.50e-48 182
Msa0000910 MtrunA17_Chr7g0255641 40.000 195 108 6 279 472 432 618 2.12e-28 122
Msa0000910 MtrunA17_Chr5g0432391 33.154 371 217 10 312 671 72 422 6.39e-47 172
Msa0000910 MtrunA17_Chr7g0255651 40.948 232 131 4 240 469 281 508 1.43e-46 174
Msa0000910 MtrunA17_Chr7g0255651 30.317 221 143 4 254 469 27 241 1.34e-18 90.1
Msa0000910 MtrunA17_Chr3g0108321 45.876 194 99 3 238 428 156 346 2.98e-46 168
Msa0000910 MtrunA17_Chr2g0277831 41.991 231 124 3 243 469 245 469 5.27e-43 166
Msa0000910 MtrunA17_Chr2g0277831 39.474 228 133 2 241 467 533 756 2.52e-42 164
Msa0000910 MtrunA17_Chr7g0255691 39.344 244 139 5 240 479 285 523 5.34e-43 164
Msa0000910 MtrunA17_Chr7g0255691 36.100 241 131 8 246 474 22 251 5.71e-26 112
Msa0000910 MtrunA17_Chr7g0255901 35.498 231 144 4 241 469 639 866 7.52e-39 154
Msa0000910 MtrunA17_Chr2g0321241 41.850 227 118 8 238 460 129 345 8.43e-38 146
Msa0000910 MtrunA17_Chr4g0026631 41.410 227 119 8 238 460 124 340 8.50e-38 146
Msa0000910 MtrunA17_Chr3g0086411 35.165 273 147 6 241 487 215 483 9.33e-37 144
Msa0000910 MtrunA17_Chr3g0086411 35.333 150 80 3 328 467 7 149 7.71e-17 84.0
Msa0000910 MtrunA17_Chr8g0387641 36.638 232 137 5 241 469 521 745 2.79e-36 146
Msa0000910 MtrunA17_Chr4g0038101 37.281 228 132 6 241 464 721 941 2.91e-36 146
Msa0000910 MtrunA17_Chr4g0033451 36.719 256 147 6 241 487 380 629 8.01e-36 145
Msa0000910 MtrunA17_Chr2g0327231 43.827 162 89 2 241 401 346 506 1.86e-35 140
Msa0000910 MtrunA17_Chr2g0327231 36.111 108 65 2 222 329 135 238 1.59e-12 70.5
Msa0000910 MtrunA17_Chr1g0190401 40.000 200 116 3 227 424 663 860 3.05e-35 144
Msa0000910 MtrunA17_Chr4g0004121 38.431 255 132 8 241 482 242 484 4.21e-35 140
Msa0000910 MtrunA17_Chr3g0086401 34.564 298 153 7 241 510 385 668 6.56e-35 141
Msa0000910 MtrunA17_Chr3g0086401 37.339 233 129 6 234 456 84 309 1.25e-32 134
Msa0000910 MtrunA17_Chr4g0043381 34.513 226 141 3 243 467 839 1058 9.78e-35 142
Msa0000910 MtrunA17_Chr6g0462581 37.069 232 135 6 241 469 500 723 2.13e-34 140
Msa0000910 MtrunA17_Chr3g0127401 37.395 238 127 8 241 469 81 305 1.47e-33 132
Msa0000910 MtrunA17_Chr1g0202381 36.245 229 134 6 240 464 467 687 2.01e-33 137
Msa0000910 MtrunA17_Chr1g0202371 36.842 228 131 7 241 464 397 615 2.96e-33 136
Msa0000910 MtrunA17_Chr5g0397121 35.345 232 140 6 241 469 513 737 4.92e-33 136
Msa0000910 MtrunA17_Chr2g0316851 34.766 256 154 6 222 469 573 823 5.80e-33 137
Msa0000910 MtrunA17_Chr3g0127431 35.983 239 129 8 241 469 84 308 6.65e-33 131
Msa0000910 MtrunA17_Chr1g0204031 36.325 234 137 7 240 469 556 781 7.32e-33 135
Msa0000910 MtrunA17_Chr4g0052271 38.528 231 133 7 241 469 119 342 1.14e-32 130
Msa0000910 MtrunA17_Chr1g0195731 36.481 233 137 6 241 469 934 1159 8.34e-32 133
Msa0000910 MtrunA17_Chr3g0135791 32.599 227 145 4 448 671 19 240 1.02e-31 125
Msa0000910 MtrunA17_Chr1g0195741 36.481 233 137 6 241 469 938 1163 1.67e-31 132
Msa0000910 MtrunA17_Chr3g0116131 35.965 228 135 6 241 464 902 1122 1.95e-30 128
Msa0000910 MtrunA17_Chr6g0459561 36.864 236 137 8 233 465 376 602 2.57e-29 124
Msa0000910 MtrunA17_Chr7g0246111 35.146 239 140 7 236 469 207 435 4.51e-29 122
Msa0000910 MtrunA17_Chr4g0047411 37.915 211 116 5 266 464 202 409 1.34e-28 122
Msa0000910 MtrunA17_Chr6g0459541 31.071 280 157 8 216 465 14 287 5.55e-27 112
Msa0000910 MtrunA17_Chr2g0289231 32.083 240 136 7 237 463 293 518 1.06e-22 102
Msa0000910 MtrunA17_Chr6g0459551 36.082 194 104 7 236 423 97 276 1.68e-21 97.8
Msa0000910 MtrunA17_Chr3g0135741 35.714 126 79 2 444 568 13 137 7.99e-17 77.8
Msa0000910 MtrunA17_Chr5g0432671 44.231 104 51 4 444 546 3 100 1.40e-15 73.2
Msa0000910 MtrunA17_Chr6g0459531 26.962 293 165 12 187 465 3 260 1.46e-14 75.5
Msa0000910 MtrunA17_Chr8g0372701 34.010 197 112 9 243 432 224 409 5.58e-13 72.0
Msa0000910 MtrunA17_Chr4g0062081 42.308 78 43 2 244 319 10 87 5.58e-13 65.5
Msa0000910 MtrunA17_Chr2g0315911 29.843 191 121 5 243 428 206 388 5.98e-13 71.6
Msa0000910 MtrunA17_Chr2g0315971 30.994 171 106 5 262 428 217 379 2.20e-12 70.5
Msa0000910 MtrunA17_Chr5g0404651 32.474 194 112 8 243 428 216 398 9.51e-12 68.2
Msa0000910 MtrunA17_Chr2g0315991 27.749 191 125 5 243 428 199 381 1.56e-11 67.4
Msa0000910 MtrunA17_Chr6g0452361 32.121 165 97 6 253 410 6 162 6.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000910 AT1G07510.1 73.556 658 135 4 46 690 140 771 0.0 964
Msa0000910 AT2G29080.1 69.900 701 160 6 7 689 99 766 0.0 945
Msa0000910 AT1G50250.1 49.558 452 212 6 241 680 259 706 1.65e-145 441
Msa0000910 AT5G42270.1 49.779 452 211 6 241 680 247 694 1.34e-144 439
Msa0000910 AT5G15250.1 48.626 473 226 11 218 680 199 664 8.18e-137 418
Msa0000910 AT2G30950.4 48.998 449 214 9 241 680 228 670 3.04e-135 414
Msa0000910 AT2G30950.1 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa0000910 AT2G30950.2 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa0000910 AT2G30950.3 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa0000910 AT1G06430.1 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa0000910 AT1G06430.3 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa0000910 AT1G06430.2 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa0000910 AT5G53170.1 44.843 446 226 6 238 680 356 784 1.17e-116 369
Msa0000910 AT2G26140.1 44.907 432 224 6 243 671 226 646 1.21e-116 367
Msa0000910 AT5G58870.1 48.662 411 195 6 241 638 326 733 1.09e-113 361
Msa0000910 AT3G47060.1 47.017 419 209 6 226 633 308 724 3.25e-113 360
Msa0000910 AT5G15250.2 50.779 321 130 5 218 515 199 514 1.67e-99 315
Msa0000910 AT3G02450.1 46.057 317 153 4 184 494 276 580 3.54e-83 276
Msa0000910 AT4G23940.1 41.689 367 192 5 236 585 422 783 1.87e-76 265
Msa0000910 AT3G16290.1 36.364 451 255 9 241 680 407 836 2.57e-75 260
Msa0000910 AT5G64580.1 43.421 304 164 4 224 520 296 598 3.15e-64 229
Msa0000910 AT5G19990.2 40.377 265 143 3 246 503 105 361 1.12e-57 200
Msa0000910 AT5G19990.1 40.684 263 141 3 246 501 163 417 3.25e-57 200
Msa0000910 AT5G19990.3 40.684 263 141 3 246 501 163 417 3.25e-57 200
Msa0000910 AT5G20000.1 40.684 263 141 3 246 501 163 417 4.89e-57 200
Msa0000910 AT1G53750.1 40.520 269 152 4 228 493 152 415 1.46e-56 199
Msa0000910 AT1G53780.1 39.326 267 158 3 228 493 324 587 1.89e-54 197
Msa0000910 AT1G53780.4 39.326 267 158 3 228 493 324 587 1.89e-54 197
Msa0000910 AT1G53780.3 39.326 267 158 3 228 493 323 586 2.07e-54 197
Msa0000910 AT1G53780.2 39.326 267 158 3 228 493 345 608 2.38e-54 197
Msa0000910 AT1G79560.1 28.433 517 305 16 237 701 486 989 1.35e-52 197
Msa0000910 AT4G29040.1 42.570 249 135 4 243 488 187 430 3.08e-52 187
Msa0000910 AT2G20140.1 42.570 249 135 4 243 488 187 430 6.16e-52 186
Msa0000910 AT1G79560.3 31.311 412 242 11 237 616 486 888 9.40e-52 194
Msa0000910 AT1G79560.2 31.311 412 242 11 237 616 486 888 9.49e-52 194
Msa0000910 AT3G05530.1 39.286 252 145 4 236 484 163 409 2.57e-51 184
Msa0000910 AT5G43010.1 40.323 248 144 3 241 487 136 380 2.82e-51 183
Msa0000910 AT1G45000.1 40.323 248 144 3 241 487 136 380 4.39e-51 183
Msa0000910 AT3G56690.1 40.551 254 138 5 240 487 720 966 8.69e-51 191
Msa0000910 AT3G56690.1 42.714 199 107 4 272 469 413 605 2.59e-37 150
Msa0000910 AT5G58290.1 41.200 250 133 5 238 481 149 390 1.19e-50 182
Msa0000910 AT1G09100.1 38.095 252 148 4 236 484 162 408 1.85e-49 179
Msa0000910 AT3G53230.1 41.739 230 130 3 241 469 478 704 1.42e-47 181
Msa0000910 AT3G53230.1 38.078 281 149 6 222 484 187 460 2.09e-46 177
Msa0000910 AT5G03340.1 40.870 230 132 3 241 469 477 703 3.26e-47 179
Msa0000910 AT5G03340.1 39.700 267 149 6 222 484 186 444 6.05e-47 179
Msa0000910 AT3G09840.1 39.700 267 149 6 222 484 186 444 6.99e-47 178
Msa0000910 AT3G09840.1 40.000 230 135 2 241 469 477 704 2.57e-44 171
Msa0000910 AT2G03670.1 36.032 247 153 3 240 483 282 526 4.73e-40 156
Msa0000910 AT2G03670.1 34.940 249 145 7 245 483 23 264 3.15e-30 127
Msa0000910 AT3G01610.2 40.517 232 115 6 243 460 232 454 8.97e-40 157
Msa0000910 AT3G01610.2 35.897 273 151 7 241 496 525 790 5.04e-34 139
Msa0000910 AT3G01610.1 40.517 232 115 6 243 460 232 454 9.74e-40 157
Msa0000910 AT3G01610.1 35.897 273 151 7 241 496 525 790 5.01e-34 139
Msa0000910 AT1G03000.1 35.776 232 142 5 241 469 655 882 1.80e-37 150
Msa0000910 AT1G05910.1 35.985 264 156 5 241 497 378 635 4.93e-37 149
Msa0000910 AT1G64110.1 37.500 232 135 6 241 469 513 737 1.82e-36 147
Msa0000910 AT1G64110.5 37.500 232 135 5 241 469 516 740 1.96e-36 147
Msa0000910 AT1G64110.3 37.500 232 135 5 241 469 516 740 1.96e-36 147
Msa0000910 AT1G64110.2 37.500 232 135 5 241 469 518 742 2.04e-36 147
Msa0000910 AT1G64110.4 37.500 232 135 5 241 469 518 742 2.04e-36 147
Msa0000910 AT2G27600.1 39.474 228 122 9 238 460 126 342 3.10e-35 139
Msa0000910 AT3G04340.1 39.801 201 117 3 227 425 767 965 4.35e-35 144
Msa0000910 AT1G80350.1 37.838 259 136 8 236 481 231 477 7.57e-35 139
Msa0000910 AT4G28000.3 35.776 232 138 5 241 469 517 740 1.87e-34 140
Msa0000910 AT4G28000.1 35.776 232 138 5 241 469 515 738 2.47e-34 140
Msa0000910 AT4G28000.2 35.776 232 138 5 241 469 517 740 2.81e-34 140
Msa0000910 AT5G08470.1 36.052 233 128 5 243 467 843 1062 2.87e-34 141
Msa0000910 AT5G08470.3 36.052 233 128 5 243 467 834 1053 2.92e-34 140
Msa0000910 AT3G15120.2 39.224 232 128 6 243 467 728 953 4.21e-34 140
Msa0000910 AT3G15120.1 39.224 232 128 6 243 467 718 943 4.39e-34 140
Msa0000910 AT5G52882.1 36.638 232 136 5 241 469 514 737 5.02e-34 139
Msa0000910 AT1G50140.2 37.281 228 132 6 241 464 689 909 1.06e-33 139
Msa0000910 AT1G50140.5 37.281 228 132 6 241 464 689 909 1.06e-33 139
Msa0000910 AT1G50140.3 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa0000910 AT1G50140.1 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa0000910 AT1G50140.4 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa0000910 AT4G02480.1 31.457 302 170 7 241 512 960 1254 7.09e-33 137
Msa0000910 AT5G53540.1 36.864 236 131 8 241 469 84 308 1.22e-32 131
Msa0000910 AT3G19740.1 36.842 228 133 6 241 464 701 921 2.92e-32 134
Msa0000910 AT4G27680.1 37.712 236 129 8 241 469 81 305 2.24e-31 127
Msa0000910 AT2G45500.4 34.137 249 141 8 236 475 75 309 2.33e-31 126
Msa0000910 AT2G45500.3 34.137 249 141 8 236 475 75 309 2.33e-31 126
Msa0000910 AT2G34560.1 38.362 232 133 8 241 469 100 324 2.86e-31 126
Msa0000910 AT2G34560.2 38.362 232 133 8 241 469 109 333 3.24e-31 126
Msa0000910 AT2G03670.2 34.940 249 145 7 245 483 23 264 8.42e-31 126
Msa0000910 AT2G03670.2 36.429 140 88 1 240 378 282 421 2.41e-18 88.6
Msa0000910 AT1G02890.1 30.132 302 174 7 241 512 941 1235 1.18e-30 129
Msa0000910 AT2G45500.2 34.137 249 141 8 236 475 208 442 1.29e-30 126
Msa0000910 AT2G45500.1 34.137 249 141 8 236 475 212 446 1.58e-30 126
Msa0000910 AT2G45500.5 34.137 249 141 8 236 475 218 452 1.72e-30 126
Msa0000910 AT4G24860.1 35.965 228 135 6 241 464 817 1037 2.67e-30 128
Msa0000910 AT4G24860.3 35.965 228 135 6 241 464 815 1035 3.18e-30 128
Msa0000910 AT4G24860.4 35.965 228 135 6 241 464 790 1010 3.78e-30 128
Msa0000910 AT4G24860.2 35.965 228 135 6 241 464 813 1033 3.99e-30 128
Msa0000910 AT3G27120.1 35.391 243 141 7 229 465 388 620 2.19e-28 121
Msa0000910 AT4G04910.1 38.498 213 110 6 266 463 239 445 5.65e-28 120
Msa0000910 AT4G04180.2 30.952 252 149 8 222 463 296 532 7.37e-26 113
Msa0000910 AT4G04180.1 30.952 252 149 8 222 463 301 537 9.44e-26 113
Msa0000910 AT1G62130.1 33.333 231 125 7 241 464 750 958 3.37e-25 112
Msa0000910 AT1G62130.2 33.333 231 125 7 241 464 743 951 3.72e-25 112
Msa0000910 AT1G45000.2 40.288 139 81 2 241 378 136 273 4.74e-23 101
Msa0000910 AT1G02890.2 26.159 302 158 8 241 512 941 1207 6.01e-19 92.4
Msa0000910 AT5G08470.2 34.211 152 89 3 243 390 843 987 1.30e-18 91.3
Msa0000910 AT3G50930.1 33.696 184 93 8 243 410 264 434 3.39e-12 70.1
Msa0000910 AT3G28610.1 28.467 274 153 12 243 497 202 451 5.26e-12 69.3
Msa0000910 AT5G40000.1 26.966 267 163 9 243 496 206 453 1.12e-11 68.2

Find 203 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATATTATTTCAATAT+TGG 0.141331 1_1:-2299330 Msa0000910:CDS
TTCAAATAAGTCATATATTA+TGG 0.151888 1_1:+2297492 None:intergenic
TAGAGTGAGAAACTTGTTTA+AGG 0.174086 1_1:-2298662 Msa0000910:CDS
GTTACCTATTCTTCTGAAAT+TGG 0.199385 1_1:-2299231 Msa0000910:CDS
GCAGCAGCAGATTAGCTTTC+AGG 0.211301 1_1:-2299589 Msa0000910:CDS
TTGGAATTCTTCTCAAATAT+TGG 0.229345 1_1:-2297347 Msa0000910:three_prime_UTR
CCAAGCTCTTGGTATTTCTT+AGG 0.233058 1_1:+2298835 None:intergenic
ATAAATATTATTTCAATATT+GGG 0.236143 1_1:-2299329 Msa0000910:CDS
ATATTATTCTTCTCAAATAT+TGG 0.237904 1_1:-2297411 Msa0000910:three_prime_UTR
TGCTGTTGCAGGTTGGTTCT+TGG 0.252343 1_1:-2298092 Msa0000910:CDS
TTTGGCATTTCTCATCTATA+TGG 0.257662 1_1:-2299166 Msa0000910:CDS
CAGGTTTATCAATTGTTATT+TGG 0.261861 1_1:+2298407 None:intergenic
GAGAGTTCAAAACATATATC+TGG 0.273733 1_1:+2299499 None:intergenic
TTCCTTCACTTCATAAATTC+AGG 0.281074 1_1:-2300886 Msa0000910:intron
AGATGACTTGCTTCCAATCT+TGG 0.281284 1_1:-2297612 Msa0000910:CDS
ACCTCAGGCTCTATCATAAT+TGG 0.281315 1_1:+2297560 None:intergenic
ACCCTTCCTGCGAAGGGATA+TGG 0.294128 1_1:-2299360 Msa0000910:CDS
GGAGTTTATGAATAAGCTTT+TGG 0.304203 1_1:-2299568 Msa0000910:CDS
TGAGGCAAAACAAGAAATTA+TGG 0.336127 1_1:-2298881 Msa0000910:CDS
GCTCTTCTGGTGGGTCCTCC+AGG 0.336675 1_1:-2298793 Msa0000910:CDS
AATTCCAAAAGGTGCTCTTC+TGG 0.340894 1_1:-2298806 Msa0000910:CDS
TGGTGGTCGGGCTGCCGAGC+AGG 0.341124 1_1:-2297936 Msa0000910:CDS
TCCCTTACTCCAGGATTTGC+TGG 0.341796 1_1:-2298295 Msa0000910:CDS
TGATAGGATCATTGGTGGTT+TGG 0.342606 1_1:-2298179 Msa0000910:CDS
GCCGGTGGTAAGGGTCCTTT+TGG 0.346091 1_1:-2299141 Msa0000910:CDS
CCTCGCGGATCATCGGCTCT+TGG 0.353189 1_1:-2298034 Msa0000910:CDS
GATTTCTTAGAACTGTTTGT+TGG 0.356042 1_1:-2298697 Msa0000910:CDS
CATTCAACACCTGTTGCCTT+TGG 0.359012 1_1:-2299184 Msa0000910:CDS
ATTTGTTTGAGGAAACAGTA+TGG 0.369018 1_1:-2299799 Msa0000910:exon
AAATGCTCTACTAAACATTT+AGG 0.370536 1_1:+2297309 None:intergenic
AACAGTGATGCAAGATTGAT+TGG 0.371102 1_1:+2299829 None:intergenic
GGTTCTCATTCGGAACATAC+TGG 0.373559 1_1:+2298005 None:intergenic
TAGAGCATTTGAATTGGAAT+TGG 0.373744 1_1:-2297296 None:intergenic
CTCGCGGATCATCGGCTCTT+GGG 0.376272 1_1:-2298033 Msa0000910:CDS
TCGCCATCGCCGCCGACAAT+GGG 0.376809 1_1:+2299667 None:intergenic
GATGACTTGCTTCCAATCTT+GGG 0.377308 1_1:-2297611 Msa0000910:CDS
CAACAGCATGACCTGCTTCA+TGG 0.377810 1_1:+2298107 None:intergenic
AAAGCAACTGCAGGGGAATC+TGG 0.378044 1_1:-2298748 Msa0000910:CDS
CTATATGGTTGCCGGTGGTA+AGG 0.395182 1_1:-2299151 Msa0000910:CDS
GTTTAGTAGAGCATTTGAAT+TGG 0.395638 1_1:-2297302 Msa0000910:three_prime_UTR
TTTCTCATCTATATGGTTGC+CGG 0.396422 1_1:-2299159 Msa0000910:CDS
CACCCCATTGTCGGCGGCGA+TGG 0.397410 1_1:-2299670 Msa0000910:CDS
TCAAGTAAATCTGAAATATC+TGG 0.398278 1_1:+2298368 None:intergenic
TTAGAACTGTTTGTTGGTGT+TGG 0.399000 1_1:-2298691 Msa0000910:CDS
ATTTCGAGGCAGCTATTGAT+AGG 0.405057 1_1:-2298195 Msa0000910:CDS
AAAAGGGTCTTCCCTGTGCC+TGG 0.405205 1_1:+2298775 None:intergenic
CTGGTGGGTCCTCCAGGCAC+AGG 0.412352 1_1:-2298787 Msa0000910:CDS
TTGTATGACCCTTGGTGGTC+GGG 0.412979 1_1:-2297948 Msa0000910:CDS
GTTTAGTAGAGCATTTGAAT+TGG 0.413524 1_1:-2297366 Msa0000910:three_prime_UTR
CCCACCAGAAGAGCACCTTT+TGG 0.413587 1_1:+2298802 None:intergenic
TTCTGAAATTGGCTGGCACC+TGG 0.417740 1_1:-2299220 Msa0000910:CDS
TATGCTCAAGTAGCCGTCTA+TGG 0.420332 1_1:-2297851 Msa0000910:CDS
ATTTCAGAAGAATAGGTAAC+AGG 0.420734 1_1:+2299234 None:intergenic
CGCCTCGCCGTCGCCGTCAC+CGG 0.429111 1_1:+2301041 None:intergenic
GAAGCAGGTCATGCTGTTGC+AGG 0.430567 1_1:-2298103 Msa0000910:CDS
ATTGATGAAATTGATGCAAT+TGG 0.431450 1_1:-2298607 Msa0000910:CDS
GTCATATATTATGGGATGAA+TGG 0.434709 1_1:+2297501 None:intergenic
GATGGCTTTGGAACCACTGC+TGG 0.435918 1_1:-2298505 Msa0000910:CDS
TATTTCAGATTTACTTGAAA+GGG 0.438357 1_1:-2298363 Msa0000910:CDS
TGGTCACGACCTTTGATGTC+AGG 0.443122 1_1:+2298388 None:intergenic
TGGTGATTCAGTACTCTTGA+AGG 0.444257 1_1:+2297580 None:intergenic
CCAGCCAATTTCAGAAGAAT+AGG 0.446134 1_1:+2299227 None:intergenic
AAACCATACAGCAACAAAAC+TGG 0.446545 1_1:-2297767 Msa0000910:CDS
CCTATTCTTCTGAAATTGGC+TGG 0.447841 1_1:-2299227 Msa0000910:CDS
GTGCCATTTCTCTCAATATC+CGG 0.449729 1_1:-2298724 Msa0000910:CDS
CAATAGTTACTTTCAACAAT+GGG 0.453504 1_1:+2298059 None:intergenic
GAACCGGATATTGAGAGAAA+TGG 0.454858 1_1:+2298721 None:intergenic
AAGTACTTTAAATCAATTGT+TGG 0.458092 1_1:-2298536 Msa0000910:CDS
TCAAATAAGTCATATATTAT+GGG 0.459122 1_1:+2297493 None:intergenic
GTCATGAGAAGGTTCTCATT+CGG 0.459278 1_1:+2297995 None:intergenic
CTCCAGCAAATCCTGGAGTA+AGG 0.460210 1_1:+2298293 None:intergenic
AAGGGTCGCACACCCAAGAT+TGG 0.464532 1_1:+2297599 None:intergenic
TATTGTTCCTCGCGGATCAT+CGG 0.464947 1_1:-2298041 Msa0000910:CDS
TGAGAAATGCCAAAGGCAAC+AGG 0.465291 1_1:+2299175 None:intergenic
AGGGCTTTGTCTAATACATC+AGG 0.465840 1_1:+2298454 None:intergenic
AAATCAATTGTTGGTGGAGA+TGG 0.466589 1_1:-2298527 Msa0000910:CDS
TCGCTCACGCGTCGCCGCAC+CGG 0.473168 1_1:+2300996 None:intergenic
ATCGCCATCGCCGCCGACAA+TGG 0.473751 1_1:+2299666 None:intergenic
TTGGTGGAGATGGATGGCTT+TGG 0.474835 1_1:-2298517 Msa0000910:CDS
CCGATGTTAAAGACTCCAAA+AGG 0.480457 1_1:+2299126 None:intergenic
GTTTATCAATTGTTATTTGG+CGG 0.482713 1_1:+2298410 None:intergenic
AAATGCTCTACTAAACGTTT+AGG 0.483932 1_1:+2297373 None:intergenic
GCTGCCGAGCAGGTTCTCAT+TGG 0.485652 1_1:-2297926 Msa0000910:CDS
AGAATTTCGCACCCCATTGT+CGG 0.486791 1_1:-2299679 Msa0000910:CDS
CACTGCTGGAGTTGTTGTGC+TGG 0.487338 1_1:-2298491 Msa0000910:CDS
ATATCCGCTCCAGCAAATCC+TGG 0.487859 1_1:+2298286 None:intergenic
TACTTGAGCATATGTCATCT+TGG 0.491081 1_1:+2297862 None:intergenic
GCAGCTATTGATAGGATCAT+TGG 0.491525 1_1:-2298187 Msa0000910:CDS
TCATCAATAAATACTATACT+AGG 0.493104 1_1:+2298622 None:intergenic
TATATGGTTGCCGGTGGTAA+GGG 0.494089 1_1:-2299150 Msa0000910:CDS
CTTGTATGACCCTTGGTGGT+CGG 0.495286 1_1:-2297949 Msa0000910:CDS
CTCATTGGAACAATCTCTAC+AGG 0.497010 1_1:-2297911 Msa0000910:CDS
CAAAACGCCCTGGTCTAAGT+AGG 0.497564 1_1:+2298434 None:intergenic
GCTGGAGTTGTTGTGCTGGC+AGG 0.497655 1_1:-2298487 Msa0000910:CDS
TTGATAATGAAGTGCGAGAA+TGG 0.499292 1_1:-2297736 Msa0000910:CDS
ACTGAGGTTAGAGAGGAGTA+AGG 0.499321 1_1:+2301066 None:intergenic
TTGATGCAATTGGTCGGGCA+AGG 0.500453 1_1:-2298597 Msa0000910:CDS
AGAGAGAGCTCAAATAGCAC+TGG 0.502174 1_1:-2299280 Msa0000910:CDS
GATAGGACTTGTATGACCCT+TGG 0.505375 1_1:-2297956 Msa0000910:CDS
TCCTCTCTAACCTCAGTCTC+CGG 0.510242 1_1:-2301060 Msa0000910:five_prime_UTR
TTTGTTTGAGGAAACAGTAT+GGG 0.515714 1_1:-2299798 Msa0000910:exon
GTTGTTCCTTTGTCATGAGA+AGG 0.516090 1_1:+2297984 None:intergenic
TACAGGAGCACAAGATGACT+TGG 0.518130 1_1:-2297894 Msa0000910:CDS
CAGTTCTAAGAAATCAGAAC+CGG 0.518886 1_1:+2298705 None:intergenic
TCCAAAAGGTGCTCTTCTGG+TGG 0.519532 1_1:-2298803 Msa0000910:CDS
ACAATATGATCTACCAATCC+TGG 0.522222 1_1:+2299543 None:intergenic
AGATTGGAAGCAAGTCATCT+TGG 0.522810 1_1:+2297615 None:intergenic
CAACTATGTGGAACAACCTC+AGG 0.525515 1_1:+2297545 None:intergenic
TACTTTAAATCAATTGTTGG+TGG 0.526387 1_1:-2298533 Msa0000910:CDS
CACCATATCCCTTCGCAGGA+AGG 0.526594 1_1:+2299358 None:intergenic
AAGCTTGCATCCCTTACTCC+AGG 0.530533 1_1:-2298304 Msa0000910:CDS
TTGTCTACTTTAGTAAAATG+TGG 0.531413 1_1:+2299099 None:intergenic
AGAGTTCAAAACATATATCT+GGG 0.532045 1_1:+2299500 None:intergenic
TGATGCAATTGGTCGGGCAA+GGG 0.533289 1_1:-2298596 Msa0000910:CDS
ACAATAGTTACTTTCAACAA+TGG 0.533587 1_1:+2298058 None:intergenic
TGGTGGGTCCTCCAGGCACA+GGG 0.536261 1_1:-2298786 Msa0000910:CDS
TGAAGTGAAGGAAATCAAGA+AGG 0.536432 1_1:+2300896 None:intergenic
CTCGGCAGCCCGACCACCAA+GGG 0.536999 1_1:+2297940 None:intergenic
TGAAATTGATGCAATTGGTC+GGG 0.538277 1_1:-2298602 Msa0000910:CDS
CTTAAACATACTCAACTATG+TGG 0.539986 1_1:+2297533 None:intergenic
CGTCACACATGATCATTTCG+AGG 0.540747 1_1:-2298209 Msa0000910:CDS
ACCATATCCCTTCGCAGGAA+GGG 0.541666 1_1:+2299359 None:intergenic
TGCCCACCATATCCCTTCGC+AGG 0.542347 1_1:+2299354 None:intergenic
ATATTTCAGATTTACTTGAA+AGG 0.542997 1_1:-2298364 Msa0000910:CDS
CAGGTCATGCTGTTGCAGGT+TGG 0.548618 1_1:-2298099 Msa0000910:CDS
TTCGTTTCTGTTTGATTACG+AGG 0.548639 1_1:+2299450 None:intergenic
TTCGTTTCTGTTTGATTACG+AGG 0.548639 1_1:+2299477 None:intergenic
CTTGGTGCCAAAATTCCAAA+AGG 0.552017 1_1:-2298817 Msa0000910:CDS
AACCTGAATTTATGAAGTGA+AGG 0.552716 1_1:+2300884 None:intergenic
AGAAGAAACCCTTCCTGCGA+AGG 0.555125 1_1:-2299367 Msa0000910:CDS
GAAACTTGTTTAAGGAAGCA+AGG 0.555548 1_1:-2298654 Msa0000910:CDS
CCTAAGAAATACCAAGAGCT+TGG 0.555551 1_1:-2298835 Msa0000910:CDS
GTTCTCATTCGGAACATACT+GGG 0.557136 1_1:+2298006 None:intergenic
TTCGTATCTGTTTGATTACG+AGG 0.557306 1_1:+2299423 None:intergenic
CTCCGGTGACGGCGACGGCG+AGG 0.557585 1_1:-2301043 Msa0000910:five_prime_UTR
AGCTTACGTGAATAATATGA+AGG 0.560744 1_1:+2298322 None:intergenic
ACCGTTGCTTACCATGAAGC+AGG 0.562002 1_1:-2298118 Msa0000910:CDS
GGTATTTCTTAGGACTCTTG+AGG 0.566392 1_1:+2298845 None:intergenic
GATGCAATTGGTCGGGCAAG+GGG 0.566686 1_1:-2298595 Msa0000910:CDS
GCTATTGATAGGATCATTGG+TGG 0.567101 1_1:-2298184 Msa0000910:CDS
ATTTGGCGGTCAAAACGCCC+TGG 0.570824 1_1:+2298424 None:intergenic
ATGAAATTGATGCAATTGGT+CGG 0.570840 1_1:-2298603 Msa0000910:CDS
GAAGAAACCCTTCCTGCGAA+GGG 0.573228 1_1:-2299366 Msa0000910:CDS
GATGGCGATGATACTGATGA+TGG 0.573875 1_1:-2299652 Msa0000910:CDS
TCAGTCTCCGGTGACGGCGA+CGG 0.575849 1_1:-2301048 Msa0000910:five_prime_UTR
GCTCGGCAGCCCGACCACCA+AGG 0.576079 1_1:+2297939 None:intergenic
AAGTCAAACACAGAAGATGA+AGG 0.576484 1_1:-2299739 Msa0000910:CDS
TCCAGCAAATCCTGGAGTAA+GGG 0.577389 1_1:+2298294 None:intergenic
TCTGTTGTCGCGACTGAGAG+AGG 0.577419 1_1:+2300969 None:intergenic
GAAGCTTATAGAGAAAGAGA+AGG 0.580722 1_1:-2297687 Msa0000910:CDS
CAAACACAGAAGATGAAGGA+AGG 0.581136 1_1:-2299735 Msa0000910:CDS
CCAAAAGGTGCTCTTCTGGT+GGG 0.582841 1_1:-2298802 Msa0000910:CDS
CGCCATCGCCGCCGACAATG+GGG 0.584073 1_1:+2299668 None:intergenic
AAAACGCCCTGGTCTAAGTA+GGG 0.589323 1_1:+2298435 None:intergenic
ATTGATAAACCTGACATCAA+AGG 0.590486 1_1:-2298397 Msa0000910:CDS
GAATGAATGTCAAGAACTCC+AGG 0.593301 1_1:+2299202 None:intergenic
GACAAAGCCCTACTTAGACC+AGG 0.594683 1_1:-2298442 Msa0000910:CDS
ACCAATTATGATAGAGCCTG+AGG 0.595840 1_1:-2297561 Msa0000910:CDS
ACCGGAGACTGAGGTTAGAG+AGG 0.596652 1_1:+2301059 None:intergenic
TGATAATGAAGTGCGAGAAT+GGG 0.597932 1_1:-2297735 Msa0000910:CDS
CTCATCTATATGGTTGCCGG+TGG 0.598370 1_1:-2299156 Msa0000910:CDS
CGGGCAAGGGGTAGTAGAGG+CGG 0.598922 1_1:-2298583 Msa0000910:CDS
GGTGATTCAGTACTCTTGAA+GGG 0.599010 1_1:+2297581 None:intergenic
ACGACATCGCACAGTCTCAC+CGG 0.600088 1_1:-2301015 Msa0000910:five_prime_UTR
CTTCCTGCGAAGGGATATGG+TGG 0.605558 1_1:-2299357 Msa0000910:CDS
TCTGTTTCTGTTTGATTACG+AGG 0.607446 1_1:+2299396 None:intergenic
TACTCCAGGATTTGCTGGAG+CGG 0.607722 1_1:-2298290 Msa0000910:CDS
TTCTGCAGTATCAAGAACAA+TGG 0.609024 1_1:+2299859 None:intergenic
CTAACCTCAGTCTCCGGTGA+CGG 0.609048 1_1:-2301054 Msa0000910:five_prime_UTR
ACCTGCTTCATGGTAAGCAA+CGG 0.609319 1_1:+2298117 None:intergenic
ATGGCGATGATACTGATGAT+GGG 0.613407 1_1:-2299651 Msa0000910:CDS
ATTTCGCACCCCATTGTCGG+CGG 0.615024 1_1:-2299676 Msa0000910:CDS
ACAGTGATGCAAGATTGATT+GGG 0.615868 1_1:+2299830 None:intergenic
TAACAGGTACAAAATCATGA+TGG 0.616641 1_1:+2299250 None:intergenic
GGTCGGGCAAGGGGTAGTAG+AGG 0.619478 1_1:-2298586 Msa0000910:CDS
AGGACTTGTATGACCCTTGG+TGG 0.619993 1_1:-2297953 Msa0000910:CDS
GAAGTGAAGGAAATCAAGAA+GGG 0.620928 1_1:+2300897 None:intergenic
TGTTCCAATGAGAACCTGCT+CGG 0.621791 1_1:+2297922 None:intergenic
GTCGCCGTCACCGGAGACTG+AGG 0.629614 1_1:+2301050 None:intergenic
CAGCACAACAACTCCAGCAG+TGG 0.631517 1_1:+2298492 None:intergenic
TCCAAAAGGACCCTTACCAC+CGG 0.633292 1_1:+2299140 None:intergenic
ACAAAGCCCTACTTAGACCA+GGG 0.635104 1_1:-2298441 Msa0000910:CDS
GTGAATAATATGAAGGCTCG+TGG 0.635461 1_1:+2298329 None:intergenic
AAGCTGCTCTGATTGCTGCA+AGG 0.638573 1_1:-2298246 Msa0000910:CDS
TGAGAACCTTCTCATGACAA+AGG 0.638697 1_1:-2297990 Msa0000910:CDS
CAATTGTTGGTGGAGATGGA+TGG 0.642273 1_1:-2298523 Msa0000910:CDS
GGTGAGACTGTGCGATGTCG+TGG 0.642413 1_1:+2301017 None:intergenic
TAATGAAGTGCGAGAATGGG+TGG 0.649940 1_1:-2297732 Msa0000910:CDS
GGAGAAAGTAGCTCAACTTG+CGG 0.651792 1_1:-2297666 Msa0000910:CDS
GAGAGAGCTCAAATAGCACT+GGG 0.653868 1_1:-2299279 Msa0000910:CDS
CAGTATCAAGAACAATGGAG+TGG 0.659087 1_1:+2299864 None:intergenic
TTTAGCAAAAGCAACTGCAG+GGG 0.659558 1_1:-2298755 Msa0000910:CDS
TGGTTTGGAGAAGAAGAACA+AGG 0.659827 1_1:-2298164 Msa0000910:CDS
AAAGTAACTATTGTTCCTCG+CGG 0.664079 1_1:-2298049 Msa0000910:CDS
AGGGTCTTCCCTGTGCCTGG+AGG 0.665486 1_1:+2298778 None:intergenic
CGTAATCAAACAGAAACAGA+CGG 0.675072 1_1:-2299393 Msa0000910:CDS
ATCGCACAGTCTCACCGGTG+CGG 0.681767 1_1:-2301010 Msa0000910:five_prime_UTR
AGATGTTGCTGGCTGTGATG+AGG 0.687105 1_1:-2298899 Msa0000910:CDS
TGGCGATGATACTGATGATG+GGG 0.688912 1_1:-2299650 Msa0000910:CDS
ATATAGATGAGAAATGCCAA+AGG 0.694545 1_1:+2299168 None:intergenic
TTCCTGCGAAGGGATATGGT+GGG 0.714800 1_1:-2299356 Msa0000910:CDS
TCGCATAGTTTCAGTTCACG+CGG 0.732567 1_1:-2301091 Msa0000910:five_prime_UTR
CCAAGAGCCGATGATCCGCG+AGG 0.755348 1_1:+2298034 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTGTAGTTAATATTT+TGG - chr1_1:2298451-2298470 Msa0000910:CDS 10.0%
!!! AATATTGTAGTTAATATTTT+GGG - chr1_1:2298452-2298471 Msa0000910:CDS 10.0%
!!! TTTATTCTTTTGTAAATAAA+TGG - chr1_1:2299341-2299360 Msa0000910:CDS 10.0%
!!! TTATATATTTTTCTTAATCT+AGG + chr1_1:2300927-2300946 None:intergenic 10.0%
!! AAATCTAAGTAAAAGAATTT+AGG + chr1_1:2297747-2297766 None:intergenic 15.0%
!!! TTTTTTTAAATCACATAAAG+AGG - chr1_1:2297775-2297794 Msa0000910:CDS 15.0%
!!! TTTTTTAAATCACATAAAGA+GGG - chr1_1:2297776-2297795 Msa0000910:CDS 15.0%
!!! TTATTTTGAATTCTGTTTAT+TGG - chr1_1:2297850-2297869 Msa0000910:CDS 15.0%
!! TCAAATAAGTCATATATTAT+GGG + chr1_1:2300896-2300915 None:intergenic 15.0%
!! TTCAAATAAGTCATATATTA+TGG + chr1_1:2300897-2300916 None:intergenic 15.0%
!! ATATTATTCTTCTCAAATAT+TGG - chr1_1:2300975-2300994 Msa0000910:five_prime_UTR 15.0%
!! AAATTGAATCAAACAACATA+GGG + chr1_1:2297638-2297657 None:intergenic 20.0%
!! AAAATTGAATCAAACAACAT+AGG + chr1_1:2297639-2297658 None:intergenic 20.0%
!!! ATTCTTTTACTTAGATTTTG+TGG - chr1_1:2297749-2297768 Msa0000910:CDS 20.0%
!!! TTCTTTTACTTAGATTTTGT+GGG - chr1_1:2297750-2297769 Msa0000910:CDS 20.0%
!! ATAAAAATCACATTAAGATC+AGG + chr1_1:2297823-2297842 None:intergenic 20.0%
!!! TTGTTTATGATTTGGTTAAT+TGG - chr1_1:2297961-2297980 Msa0000910:CDS 20.0%
!! TTGAAATTCTATTTATGACT+TGG - chr1_1:2298090-2298109 Msa0000910:CDS 20.0%
!!! TGTTCAAAAAAATTTGTTTG+AGG - chr1_1:2298576-2298595 Msa0000910:CDS 20.0%
!!! TCTATCTTATATTTTGATAC+TGG - chr1_1:2298768-2298787 Msa0000910:CDS 20.0%
!!! CTATCTTATATTTTGATACT+GGG - chr1_1:2298769-2298788 Msa0000910:CDS 20.0%
!! TCATCAATAAATACTATACT+AGG + chr1_1:2299767-2299786 None:intergenic 20.0%
!! AAGTACTTTAAATCAATTGT+TGG - chr1_1:2299850-2299869 Msa0000910:five_prime_UTR 20.0%
!! ATATTTCAGATTTACTTGAA+AGG - chr1_1:2300022-2300041 Msa0000910:intron 20.0%
!! TATTTCAGATTTACTTGAAA+GGG - chr1_1:2300023-2300042 Msa0000910:intron 20.0%
! AACCCTAGAAATCAAAAATT+GGG - chr1_1:2297592-2297611 Msa0000910:CDS 25.0%
!!! TTTTATCATTGTCGTTTGAT+TGG - chr1_1:2297664-2297683 Msa0000910:CDS 25.0%
! GAATTTAGGAAAACAATTAG+AGG + chr1_1:2297733-2297752 None:intergenic 25.0%
!!! GATGATGAATTATGTTTTGA+TGG - chr1_1:2297889-2297908 Msa0000910:CDS 25.0%
!!! CTGGAATTTTGTTTATGATT+TGG - chr1_1:2297953-2297972 Msa0000910:CDS 25.0%
! AATAGAATTTCAACTGGATT+TGG + chr1_1:2298083-2298102 None:intergenic 25.0%
! GTCATAAATAGAATTTCAAC+TGG + chr1_1:2298089-2298108 None:intergenic 25.0%
!!! CTATTTATGACTTGGTTAAT+TGG - chr1_1:2298098-2298117 Msa0000910:CDS 25.0%
! AATTGGAAAAGTTTATGACT+TGG - chr1_1:2298115-2298134 Msa0000910:CDS 25.0%
! GTTAGTTATAGTTTATGACT+TGG - chr1_1:2298190-2298209 Msa0000910:CDS 25.0%
! TAGCCTAATGTTATTAAAGT+TGG - chr1_1:2298234-2298253 Msa0000910:CDS 25.0%
! AGTCCAACTTTAATAACATT+AGG + chr1_1:2298240-2298259 None:intergenic 25.0%
! AGAGTTCAAAACATATATCT+GGG + chr1_1:2298889-2298908 None:intergenic 25.0%
! TTGTCTACTTTAGTAAAATG+TGG + chr1_1:2299290-2299309 None:intergenic 25.0%
!!! TGTCTGAATTATTTTTTGTC+AGG - chr1_1:2299454-2299473 Msa0000910:CDS 25.0%
! ATTGATGAAATTGATGCAAT+TGG - chr1_1:2299779-2299798 Msa0000910:CDS 25.0%
! TACTTTAAATCAATTGTTGG+TGG - chr1_1:2299853-2299872 Msa0000910:five_prime_UTR 25.0%
!!! GTTTATCAATTGTTATTTGG+CGG + chr1_1:2299979-2299998 None:intergenic 25.0%
!! CAGGTTTATCAATTGTTATT+TGG + chr1_1:2299982-2300001 None:intergenic 25.0%
!! TCAAGTAAATCTGAAATATC+TGG + chr1_1:2300021-2300040 None:intergenic 25.0%
!! CAATAGTTACTTTCAACAAT+GGG + chr1_1:2300330-2300349 None:intergenic 25.0%
!! ACAATAGTTACTTTCAACAA+TGG + chr1_1:2300331-2300350 None:intergenic 25.0%
! TTGGAATTCTTCTCAAATAT+TGG - chr1_1:2301039-2301058 Msa0000910:five_prime_UTR 25.0%
! AAATGCTCTACTAAACATTT+AGG + chr1_1:2301080-2301099 None:intergenic 25.0%
TTCCTTCACTTCATAAATTC+AGG - chr1_1:2297500-2297519 Msa0000910:three_prime_UTR 30.0%
AACCTGAATTTATGAAGTGA+AGG + chr1_1:2297505-2297524 None:intergenic 30.0%
CACTTGATTCAATTCAATGT+CGG - chr1_1:2297545-2297564 Msa0000910:CDS 30.0%
GAACCCTAGAAATCAAAAAT+TGG - chr1_1:2297591-2297610 Msa0000910:CDS 30.0%
ACCCTAGAAATCAAAAATTG+GGG - chr1_1:2297593-2297612 Msa0000910:CDS 30.0%
! TGATTGGAGATTTTCAATTG+AGG - chr1_1:2297680-2297699 Msa0000910:CDS 30.0%
! TTGATGGAGAGAAATTTTGT+TGG - chr1_1:2297905-2297924 Msa0000910:CDS 30.0%
GGAATGAATAGTTTATGACT+TGG - chr1_1:2297926-2297945 Msa0000910:CDS 30.0%
!! TAGTTTATGACTTGGTTAAC+TGG - chr1_1:2297934-2297953 Msa0000910:CDS 30.0%
!! GATGATGAATTTTGTTGTAG+TGG - chr1_1:2298152-2298171 Msa0000910:CDS 30.0%
!! TTTTGTTGTAGTGGCTTAAT+TGG - chr1_1:2298161-2298180 Msa0000910:CDS 30.0%
!!! GATTTTTTCTATTCTGCAAG+TGG - chr1_1:2298275-2298294 Msa0000910:CDS 30.0%
!! TAGTTGGTAGCTAGTATATT+TGG - chr1_1:2298350-2298369 Msa0000910:CDS 30.0%
ATTTGTTTGAGGAAACAGTA+TGG - chr1_1:2298587-2298606 Msa0000910:CDS 30.0%
TTTGTTTGAGGAAACAGTAT+GGG - chr1_1:2298588-2298607 Msa0000910:CDS 30.0%
! GGAGTTTATGAATAAGCTTT+TGG - chr1_1:2298818-2298837 Msa0000910:CDS 30.0%
GAGAGTTCAAAACATATATC+TGG + chr1_1:2298890-2298909 None:intergenic 30.0%
TAACAGGTACAAAATCATGA+TGG + chr1_1:2299139-2299158 None:intergenic 30.0%
ATTTCAGAAGAATAGGTAAC+AGG + chr1_1:2299155-2299174 None:intergenic 30.0%
!! GTTACCTATTCTTCTGAAAT+TGG - chr1_1:2299155-2299174 Msa0000910:CDS 30.0%
ATATAGATGAGAAATGCCAA+AGG + chr1_1:2299221-2299240 None:intergenic 30.0%
TTTGGCATTTCTCATCTATA+TGG - chr1_1:2299220-2299239 Msa0000910:CDS 30.0%
!! ATTTGTATTTTAGGGAGTTG+TGG - chr1_1:2299378-2299397 Msa0000910:CDS 30.0%
!! GTCTATTTTAAAGATGTTGC+TGG - chr1_1:2299476-2299495 Msa0000910:CDS 30.0%
TGAGGCAAAACAAGAAATTA+TGG - chr1_1:2299505-2299524 Msa0000910:CDS 30.0%
GATTTCTTAGAACTGTTTGT+TGG - chr1_1:2299689-2299708 Msa0000910:CDS 30.0%
! TAGAGTGAGAAACTTGTTTA+AGG - chr1_1:2299724-2299743 Msa0000910:CDS 30.0%
ATGAAATTGATGCAATTGGT+CGG - chr1_1:2299783-2299802 Msa0000910:CDS 30.0%
ATTGATAAACCTGACATCAA+AGG - chr1_1:2299989-2300008 Msa0000910:intron 30.0%
AGCTTACGTGAATAATATGA+AGG + chr1_1:2300067-2300086 None:intergenic 30.0%
CTTAAACATACTCAACTATG+TGG + chr1_1:2300856-2300875 None:intergenic 30.0%
GTCATATATTATGGGATGAA+TGG + chr1_1:2300888-2300907 None:intergenic 30.0%
AAATGCTCTACTAAACGTTT+AGG + chr1_1:2301016-2301035 None:intergenic 30.0%
! GTTTAGTAGAGCATTTGAAT+TGG - chr1_1:2301020-2301039 Msa0000910:five_prime_UTR 30.0%
! GTTTAGTAGAGCATTTGAAT+TGG - chr1_1:2301020-2301039 Msa0000910:five_prime_UTR 30.0%
GAAGTGAAGGAAATCAAGAA+GGG + chr1_1:2297492-2297511 None:intergenic 35.0%
TGAAGTGAAGGAAATCAAGA+AGG + chr1_1:2297493-2297512 None:intergenic 35.0%
!!! CCCCCAATTTTTGATTTCTA+GGG + chr1_1:2297597-2297616 None:intergenic 35.0%
CCCTAGAAATCAAAAATTGG+GGG - chr1_1:2297594-2297613 Msa0000910:CDS 35.0%
!!! TCCCCCAATTTTTGATTTCT+AGG + chr1_1:2297598-2297617 None:intergenic 35.0%
CAAACAACATAGGGAATCAA+TGG + chr1_1:2297629-2297648 None:intergenic 35.0%
TTCACTCGTTGAATTCTGTA+AGG - chr1_1:2298005-2298024 Msa0000910:CDS 35.0%
! CTGGATTTGGAACAATTCTT+GGG + chr1_1:2298070-2298089 None:intergenic 35.0%
! ACTGGATTTGGAACAATTCT+TGG + chr1_1:2298071-2298090 None:intergenic 35.0%
!! TTGGAGCTTTAGATTTGTGT+TGG - chr1_1:2298369-2298388 Msa0000910:CDS 35.0%
TTCTGCAGTATCAAGAACAA+TGG + chr1_1:2298530-2298549 None:intergenic 35.0%
ACAGTGATGCAAGATTGATT+GGG + chr1_1:2298559-2298578 None:intergenic 35.0%
AACAGTGATGCAAGATTGAT+TGG + chr1_1:2298560-2298579 None:intergenic 35.0%
AAGTCAAACACAGAAGATGA+AGG - chr1_1:2298647-2298666 Msa0000910:CDS 35.0%
!!! ATGAATAAGCTTTTGGAACC+AGG - chr1_1:2298825-2298844 Msa0000910:CDS 35.0%
ACAATATGATCTACCAATCC+TGG + chr1_1:2298846-2298865 None:intergenic 35.0%
! TATCTGGGCAACATTTTTGT+CGG + chr1_1:2298874-2298893 None:intergenic 35.0%
TTCGTTTCTGTTTGATTACG+AGG + chr1_1:2298912-2298931 None:intergenic 35.0%
TTCGTTTCTGTTTGATTACG+AGG + chr1_1:2298912-2298931 None:intergenic 35.0%
TTCGTATCTGTTTGATTACG+AGG + chr1_1:2298966-2298985 None:intergenic 35.0%
!! TCTGTTTCTGTTTGATTACG+AGG + chr1_1:2298993-2299012 None:intergenic 35.0%
CGTAATCAAACAGAAACAGA+CGG - chr1_1:2298993-2299012 Msa0000910:intron 35.0%
!! TGGGAATGTCTTTACTTTTG+AGG - chr1_1:2299076-2299095 Msa0000910:intron 35.0%
TTTCTCATCTATATGGTTGC+CGG - chr1_1:2299227-2299246 Msa0000910:CDS 35.0%
!!! CCTTTTGGAGTCTTTAACAT+CGG - chr1_1:2299260-2299279 Msa0000910:CDS 35.0%
!!! AAGAGCACCTTTTGGAATTT+TGG + chr1_1:2299579-2299598 None:intergenic 35.0%
!!! TGCAGTTGCTTTTGCTAAAA+GGG + chr1_1:2299630-2299649 None:intergenic 35.0%
! TTTTAGCAAAAGCAACTGCA+GGG - chr1_1:2299630-2299649 Msa0000910:CDS 35.0%
!! CAGTTCTAAGAAATCAGAAC+CGG + chr1_1:2299684-2299703 None:intergenic 35.0%
! TTAGAACTGTTTGTTGGTGT+TGG - chr1_1:2299695-2299714 Msa0000910:CDS 35.0%
! GAAACTTGTTTAAGGAAGCA+AGG - chr1_1:2299732-2299751 Msa0000910:CDS 35.0%
TGAAATTGATGCAATTGGTC+GGG - chr1_1:2299784-2299803 Msa0000910:exon 35.0%
! AAATCAATTGTTGGTGGAGA+TGG - chr1_1:2299859-2299878 Msa0000910:five_prime_UTR 35.0%
AAAGTAACTATTGTTCCTCG+CGG - chr1_1:2300337-2300356 Msa0000910:intron 35.0%
! CAAAGGAACAACTTTTCGAT+AGG - chr1_1:2300413-2300432 Msa0000910:intron 35.0%
TACTTGAGCATATGTCATCT+TGG + chr1_1:2300527-2300546 None:intergenic 35.0%
! TTTTTCGCTGAAACCATAGA+CGG + chr1_1:2300551-2300570 None:intergenic 35.0%
TATGGTTTCAGCGAAAAAGT+GGG - chr1_1:2300553-2300572 Msa0000910:intron 35.0%
AAACCATACAGCAACAAAAC+TGG - chr1_1:2300619-2300638 Msa0000910:intron 35.0%
!! TTGATAATGAAGTGCGAGAA+TGG - chr1_1:2300650-2300669 Msa0000910:intron 35.0%
! TGATAATGAAGTGCGAGAAT+GGG - chr1_1:2300651-2300670 Msa0000910:intron 35.0%
GAAGCTTATAGAGAAAGAGA+AGG - chr1_1:2300699-2300718 Msa0000910:intron 35.0%
TTGGGCAGACATTATTTACC+CGG + chr1_1:2298052-2298071 None:intergenic 40.0%
GTAGTGGCTTAATTGGAATG+AGG - chr1_1:2298168-2298187 Msa0000910:CDS 40.0%
!! TGGCAAGCATTTTAGTAAGC+TGG - chr1_1:2298295-2298314 Msa0000910:CDS 40.0%
! AAGCTGGTTTCGATTCTCTA+AGG - chr1_1:2298311-2298330 Msa0000910:CDS 40.0%
!! GATTCTCTAAGGCTAGGATA+GGG - chr1_1:2298322-2298341 Msa0000910:CDS 40.0%
GATTTGTGTTGGAGTTGTTG+CGG - chr1_1:2298380-2298399 Msa0000910:CDS 40.0%
CAGTATCAAGAACAATGGAG+TGG + chr1_1:2298525-2298544 None:intergenic 40.0%
CAAACACAGAAGATGAAGGA+AGG - chr1_1:2298651-2298670 Msa0000910:CDS 40.0%
ATGGCGATGATACTGATGAT+GGG - chr1_1:2298735-2298754 Msa0000910:CDS 40.0%
!!! TAAGCTTTTGGAACCAGGAT+TGG - chr1_1:2298830-2298849 Msa0000910:CDS 40.0%
CCAGCCAATTTCAGAAGAAT+AGG + chr1_1:2299162-2299181 None:intergenic 40.0%
!! CCTATTCTTCTGAAATTGGC+TGG - chr1_1:2299159-2299178 Msa0000910:CDS 40.0%
GAATGAATGTCAAGAACTCC+AGG + chr1_1:2299187-2299206 None:intergenic 40.0%
CCGATGTTAAAGACTCCAAA+AGG + chr1_1:2299263-2299282 None:intergenic 40.0%
AGACAAAGACGCCAAAAACA+AGG - chr1_1:2299304-2299323 Msa0000910:CDS 40.0%
!! TATTTTAGGGAGTTGTGGTG+TGG - chr1_1:2299383-2299402 Msa0000910:CDS 40.0%
GGTATTTCTTAGGACTCTTG+AGG + chr1_1:2299544-2299563 None:intergenic 40.0%
CCAAGCTCTTGGTATTTCTT+AGG + chr1_1:2299554-2299573 None:intergenic 40.0%
CCTAAGAAATACCAAGAGCT+TGG - chr1_1:2299551-2299570 Msa0000910:CDS 40.0%
!! CTTGGTGCCAAAATTCCAAA+AGG - chr1_1:2299569-2299588 Msa0000910:CDS 40.0%
!! AATTCCAAAAGGTGCTCTTC+TGG - chr1_1:2299580-2299599 Msa0000910:CDS 40.0%
!!! CTGCAGTTGCTTTTGCTAAA+AGG + chr1_1:2299631-2299650 None:intergenic 40.0%
! CTTTTAGCAAAAGCAACTGC+AGG - chr1_1:2299629-2299648 Msa0000910:CDS 40.0%
TTTAGCAAAAGCAACTGCAG+GGG - chr1_1:2299631-2299650 Msa0000910:CDS 40.0%
!! GTGCCATTTCTCTCAATATC+CGG - chr1_1:2299662-2299681 Msa0000910:CDS 40.0%
GAACCGGATATTGAGAGAAA+TGG + chr1_1:2299668-2299687 None:intergenic 40.0%
! AGGGCTTTGTCTAATACATC+AGG + chr1_1:2299935-2299954 None:intergenic 40.0%
GTGAATAATATGAAGGCTCG+TGG + chr1_1:2300060-2300079 None:intergenic 40.0%
ATTTCGAGGCAGCTATTGAT+AGG - chr1_1:2300191-2300210 Msa0000910:intron 40.0%
GCAGCTATTGATAGGATCAT+TGG - chr1_1:2300199-2300218 Msa0000910:intron 40.0%
GCTATTGATAGGATCATTGG+TGG - chr1_1:2300202-2300221 Msa0000910:intron 40.0%
! TGATAGGATCATTGGTGGTT+TGG - chr1_1:2300207-2300226 Msa0000910:intron 40.0%
! TGGTTTGGAGAAGAAGAACA+AGG - chr1_1:2300222-2300241 Msa0000910:intron 40.0%
GTTCTCATTCGGAACATACT+GGG + chr1_1:2300383-2300402 None:intergenic 40.0%
GTCATGAGAAGGTTCTCATT+CGG + chr1_1:2300394-2300413 None:intergenic 40.0%
TGAGAACCTTCTCATGACAA+AGG - chr1_1:2300396-2300415 Msa0000910:intron 40.0%
GTTGTTCCTTTGTCATGAGA+AGG + chr1_1:2300405-2300424 None:intergenic 40.0%
CTCATTGGAACAATCTCTAC+AGG - chr1_1:2300475-2300494 Msa0000910:intron 40.0%
CTATGGTTTCAGCGAAAAAG+TGG - chr1_1:2300552-2300571 Msa0000910:intron 40.0%
! CTAACGAGTCCTCTTTTTGA+GGG + chr1_1:2300591-2300610 None:intergenic 40.0%
! TCTAACGAGTCCTCTTTTTG+AGG + chr1_1:2300592-2300611 None:intergenic 40.0%
AGATTGGAAGCAAGTCATCT+TGG + chr1_1:2300774-2300793 None:intergenic 40.0%
!! AGATGACTTGCTTCCAATCT+TGG - chr1_1:2300774-2300793 Msa0000910:intron 40.0%
!! GATGACTTGCTTCCAATCTT+GGG - chr1_1:2300775-2300794 Msa0000910:intron 40.0%
GGTGATTCAGTACTCTTGAA+GGG + chr1_1:2300808-2300827 None:intergenic 40.0%
TGGTGATTCAGTACTCTTGA+AGG + chr1_1:2300809-2300828 None:intergenic 40.0%
ACCAATTATGATAGAGCCTG+AGG - chr1_1:2300825-2300844 Msa0000910:intron 40.0%
ACCTCAGGCTCTATCATAAT+TGG + chr1_1:2300829-2300848 None:intergenic 40.0%
ACTGAGGTTAGAGAGGAGTA+AGG + chr1_1:2297323-2297342 None:intergenic 45.0%
GGGTGAAAACAGCAGAATTG+AGG - chr1_1:2297796-2297815 Msa0000910:CDS 45.0%
GGCCAAACTCAGGATTAAGA+GGG + chr1_1:2298031-2298050 None:intergenic 45.0%
CTCTTAATCCTGAGTTTGGC+CGG - chr1_1:2298030-2298049 Msa0000910:CDS 45.0%
TCTTAATCCTGAGTTTGGCC+GGG - chr1_1:2298031-2298050 Msa0000910:CDS 45.0%
TTATTTACCCGGCCAAACTC+AGG + chr1_1:2298041-2298060 None:intergenic 45.0%
!! GGTTTCGATTCTCTAAGGCT+AGG - chr1_1:2298316-2298335 Msa0000910:CDS 45.0%
!! CGATTCTCTAAGGCTAGGAT+AGG - chr1_1:2298321-2298340 Msa0000910:CDS 45.0%
CTAGGATAGGGCTATCTAGT+TGG - chr1_1:2298334-2298353 Msa0000910:CDS 45.0%
GAAGAAAGGGAGATTAGCAG+TGG + chr1_1:2298487-2298506 None:intergenic 45.0%
CTGTGGAAGGAAGGAAGAAA+GGG + chr1_1:2298500-2298519 None:intergenic 45.0%
ACTGTGGAAGGAAGGAAGAA+AGG + chr1_1:2298501-2298520 None:intergenic 45.0%
AGAACAATGGAGTGGAACTG+TGG + chr1_1:2298517-2298536 None:intergenic 45.0%
AGAATTTCGCACCCCATTGT+CGG - chr1_1:2298707-2298726 Msa0000910:CDS 45.0%
GATGGCGATGATACTGATGA+TGG - chr1_1:2298734-2298753 Msa0000910:CDS 45.0%
! TGGCGATGATACTGATGATG+GGG - chr1_1:2298736-2298755 Msa0000910:CDS 45.0%
AGAGAGAGCTCAAATAGCAC+TGG - chr1_1:2299106-2299125 Msa0000910:CDS 45.0%
GAGAGAGCTCAAATAGCACT+GGG - chr1_1:2299107-2299126 Msa0000910:CDS 45.0%
CATTCAACACCTGTTGCCTT+TGG - chr1_1:2299202-2299221 Msa0000910:CDS 45.0%
TGAGAAATGCCAAAGGCAAC+AGG + chr1_1:2299214-2299233 None:intergenic 45.0%
TATATGGTTGCCGGTGGTAA+GGG - chr1_1:2299236-2299255 Msa0000910:CDS 45.0%
ACGCCAAAAACAAGGTTCGT+TGG - chr1_1:2299312-2299331 Msa0000910:CDS 45.0%
CGCCAAAAACAAGGTTCGTT+GGG - chr1_1:2299313-2299332 Msa0000910:CDS 45.0%
GCCAAAAACAAGGTTCGTTG+GGG - chr1_1:2299314-2299333 Msa0000910:CDS 45.0%
!! GAATTTTGGCACCAAGCTCT+TGG + chr1_1:2299565-2299584 None:intergenic 45.0%
! CAATTGTTGGTGGAGATGGA+TGG - chr1_1:2299863-2299882 Msa0000910:five_prime_UTR 45.0%
ACAAAGCCCTACTTAGACCA+GGG - chr1_1:2299945-2299964 Msa0000910:intron 45.0%
AAAACGCCCTGGTCTAAGTA+GGG + chr1_1:2299954-2299973 None:intergenic 45.0%
TCCAGCAAATCCTGGAGTAA+GGG + chr1_1:2300095-2300114 None:intergenic 45.0%
CGTCACACATGATCATTTCG+AGG - chr1_1:2300177-2300196 Msa0000910:intron 45.0%
ACCTGCTTCATGGTAAGCAA+CGG + chr1_1:2300272-2300291 None:intergenic 45.0%
TATTGTTCCTCGCGGATCAT+CGG - chr1_1:2300345-2300364 Msa0000910:intron 45.0%
GGTTCTCATTCGGAACATAC+TGG + chr1_1:2300384-2300403 None:intergenic 45.0%
GATAGGACTTGTATGACCCT+TGG - chr1_1:2300430-2300449 Msa0000910:intron 45.0%
TGTTCCAATGAGAACCTGCT+CGG + chr1_1:2300467-2300486 None:intergenic 45.0%
! TACAGGAGCACAAGATGACT+TGG - chr1_1:2300492-2300511 Msa0000910:intron 45.0%
TATGCTCAAGTAGCCGTCTA+TGG - chr1_1:2300535-2300554 Msa0000910:intron 45.0%
!! CTTTTTGAGGGAAAGAGAGG+AGG + chr1_1:2300579-2300598 None:intergenic 45.0%
!! CCTCTTTTTGAGGGAAAGAG+AGG + chr1_1:2300582-2300601 None:intergenic 45.0%
CCTCTCTTTCCCTCAAAAAG+AGG - chr1_1:2300579-2300598 Msa0000910:intron 45.0%
!!! GCACCAGTTTTGTTGCTGTA+TGG + chr1_1:2300625-2300644 None:intergenic 45.0%
TAATGAAGTGCGAGAATGGG+TGG - chr1_1:2300654-2300673 Msa0000910:intron 45.0%
GGAGAAAGTAGCTCAACTTG+CGG - chr1_1:2300720-2300739 Msa0000910:intron 45.0%
CAACTATGTGGAACAACCTC+AGG + chr1_1:2300844-2300863 None:intergenic 45.0%
!! TATAAATATTATTTCAATAT+TGG - chr1_1:2299056-2299075 Msa0000910:intron 5.0%
!! ATAAATATTATTTCAATATT+GGG - chr1_1:2299057-2299076 Msa0000910:intron 5.0%
!!! ATTTTTTATATTTGTATTTT+AGG - chr1_1:2299369-2299388 Msa0000910:CDS 5.0%
!!! TTTTTTATATTTGTATTTTA+GGG - chr1_1:2299370-2299389 Msa0000910:CDS 5.0%
TCCTCTCTAACCTCAGTCTC+CGG - chr1_1:2297326-2297345 Msa0000910:three_prime_UTR 50.0%
GGCCCTCTTAATCCTGAGTT+TGG - chr1_1:2298026-2298045 Msa0000910:CDS 50.0%
CGGCCAAACTCAGGATTAAG+AGG + chr1_1:2298032-2298051 None:intergenic 50.0%
GAAAGGGAGATTAGCAGTGG+CGG + chr1_1:2298484-2298503 None:intergenic 50.0%
CAATGGAGTGGAACTGTGGA+AGG + chr1_1:2298513-2298532 None:intergenic 50.0%
!! GCAGCAGCAGATTAGCTTTC+AGG - chr1_1:2298797-2298816 Msa0000910:CDS 50.0%
AGAAGAAACCCTTCCTGCGA+AGG - chr1_1:2299019-2299038 Msa0000910:intron 50.0%
GAAGAAACCCTTCCTGCGAA+GGG - chr1_1:2299020-2299039 Msa0000910:intron 50.0%
ACCATATCCCTTCGCAGGAA+GGG + chr1_1:2299030-2299049 None:intergenic 50.0%
TTCCTGCGAAGGGATATGGT+GGG - chr1_1:2299030-2299049 Msa0000910:intron 50.0%
!! TTCTGAAATTGGCTGGCACC+TGG - chr1_1:2299166-2299185 Msa0000910:CDS 50.0%
CTCATCTATATGGTTGCCGG+TGG - chr1_1:2299230-2299249 Msa0000910:CDS 50.0%
CTATATGGTTGCCGGTGGTA+AGG - chr1_1:2299235-2299254 Msa0000910:CDS 50.0%
TCCAAAAGGACCCTTACCAC+CGG + chr1_1:2299249-2299268 None:intergenic 50.0%
!!! GCCCCAACGAACCTTGTTTT+TGG + chr1_1:2299318-2299337 None:intergenic 50.0%
! AGATGTTGCTGGCTGTGATG+AGG - chr1_1:2299487-2299506 Msa0000910:CDS 50.0%
!! TCCAAAAGGTGCTCTTCTGG+TGG - chr1_1:2299583-2299602 Msa0000910:CDS 50.0%
!! CCAAAAGGTGCTCTTCTGGT+GGG - chr1_1:2299584-2299603 Msa0000910:CDS 50.0%
AAAGCAACTGCAGGGGAATC+TGG - chr1_1:2299638-2299657 Msa0000910:CDS 50.0%
TTGATGCAATTGGTCGGGCA+AGG - chr1_1:2299789-2299808 Msa0000910:exon 50.0%
TGATGCAATTGGTCGGGCAA+GGG - chr1_1:2299790-2299809 Msa0000910:exon 50.0%
TTGGTGGAGATGGATGGCTT+TGG - chr1_1:2299869-2299888 Msa0000910:five_prime_UTR 50.0%
GACAAAGCCCTACTTAGACC+AGG - chr1_1:2299944-2299963 Msa0000910:intron 50.0%
CAAAACGCCCTGGTCTAAGT+AGG + chr1_1:2299955-2299974 None:intergenic 50.0%
TGGTCACGACCTTTGATGTC+AGG + chr1_1:2300001-2300020 None:intergenic 50.0%
AAGCTTGCATCCCTTACTCC+AGG - chr1_1:2300082-2300101 Msa0000910:intron 50.0%
TCCCTTACTCCAGGATTTGC+TGG - chr1_1:2300091-2300110 Msa0000910:intron 50.0%
CTCCAGCAAATCCTGGAGTA+AGG + chr1_1:2300096-2300115 None:intergenic 50.0%
!! TACTCCAGGATTTGCTGGAG+CGG - chr1_1:2300096-2300115 Msa0000910:intron 50.0%
ATATCCGCTCCAGCAAATCC+TGG + chr1_1:2300103-2300122 None:intergenic 50.0%
AAGCTGCTCTGATTGCTGCA+AGG - chr1_1:2300140-2300159 Msa0000910:intron 50.0%
ACCGTTGCTTACCATGAAGC+AGG - chr1_1:2300268-2300287 Msa0000910:intron 50.0%
CAACAGCATGACCTGCTTCA+TGG + chr1_1:2300282-2300301 None:intergenic 50.0%
!! TGCTGTTGCAGGTTGGTTCT+TGG - chr1_1:2300294-2300313 Msa0000910:intron 50.0%
AGGACTTGTATGACCCTTGG+TGG - chr1_1:2300433-2300452 Msa0000910:intron 50.0%
! CTTGTATGACCCTTGGTGGT+CGG - chr1_1:2300437-2300456 Msa0000910:intron 50.0%
! TTGTATGACCCTTGGTGGTC+GGG - chr1_1:2300438-2300457 Msa0000910:intron 50.0%
ACCGGAGACTGAGGTTAGAG+AGG + chr1_1:2297330-2297349 None:intergenic 55.0%
CTAACCTCAGTCTCCGGTGA+CGG - chr1_1:2297332-2297351 Msa0000910:three_prime_UTR 55.0%
ACGACATCGCACAGTCTCAC+CGG - chr1_1:2297371-2297390 Msa0000910:three_prime_UTR 55.0%
TCTGTTGTCGCGACTGAGAG+AGG + chr1_1:2297420-2297439 None:intergenic 55.0%
GGAGTGGAACTGTGGAAGGA+AGG + chr1_1:2298509-2298528 None:intergenic 55.0%
ATTTCGCACCCCATTGTCGG+CGG - chr1_1:2298710-2298729 Msa0000910:CDS 55.0%
ACCCTTCCTGCGAAGGGATA+TGG - chr1_1:2299026-2299045 Msa0000910:intron 55.0%
CACCATATCCCTTCGCAGGA+AGG + chr1_1:2299031-2299050 None:intergenic 55.0%
CTTCCTGCGAAGGGATATGG+TGG - chr1_1:2299029-2299048 Msa0000910:intron 55.0%
!!! CCCACCAGAAGAGCACCTTT+TGG + chr1_1:2299587-2299606 None:intergenic 55.0%
AAAAGGGTCTTCCCTGTGCC+TGG + chr1_1:2299614-2299633 None:intergenic 55.0%
GATGCAATTGGTCGGGCAAG+GGG - chr1_1:2299791-2299810 Msa0000910:exon 55.0%
!! GATGGCTTTGGAACCACTGC+TGG - chr1_1:2299881-2299900 Msa0000910:intron 55.0%
CAGCACAACAACTCCAGCAG+TGG + chr1_1:2299897-2299916 None:intergenic 55.0%
CACTGCTGGAGTTGTTGTGC+TGG - chr1_1:2299895-2299914 Msa0000910:intron 55.0%
ATTTGGCGGTCAAAACGCCC+TGG + chr1_1:2299965-2299984 None:intergenic 55.0%
GAAGCAGGTCATGCTGTTGC+AGG - chr1_1:2300283-2300302 Msa0000910:intron 55.0%
CAGGTCATGCTGTTGCAGGT+TGG - chr1_1:2300287-2300306 Msa0000910:intron 55.0%
AAGGGTCGCACACCCAAGAT+TGG + chr1_1:2300790-2300809 None:intergenic 55.0%
GGTGAGACTGTGCGATGTCG+TGG + chr1_1:2297372-2297391 None:intergenic 60.0%
ATCGCACAGTCTCACCGGTG+CGG - chr1_1:2297376-2297395 Msa0000910:three_prime_UTR 60.0%
TGCCCACCATATCCCTTCGC+AGG + chr1_1:2299035-2299054 None:intergenic 60.0%
! GCCGGTGGTAAGGGTCCTTT+TGG - chr1_1:2299245-2299264 Msa0000910:CDS 60.0%
! GCTGGAGTTGTTGTGCTGGC+AGG - chr1_1:2299899-2299918 Msa0000910:intron 60.0%
!! CTCGCGGATCATCGGCTCTT+GGG - chr1_1:2300353-2300372 Msa0000910:intron 60.0%
GCTGCCGAGCAGGTTCTCAT+TGG - chr1_1:2300460-2300479 Msa0000910:intron 60.0%
! TCAGTCTCCGGTGACGGCGA+CGG - chr1_1:2297338-2297357 Msa0000910:three_prime_UTR 65.0%
TCGCCATCGCCGCCGACAAT+GGG + chr1_1:2298722-2298741 None:intergenic 65.0%
ATCGCCATCGCCGCCGACAA+TGG + chr1_1:2298723-2298742 None:intergenic 65.0%
! GCTCTTCTGGTGGGTCCTCC+AGG - chr1_1:2299593-2299612 Msa0000910:CDS 65.0%
! TGGTGGGTCCTCCAGGCACA+GGG - chr1_1:2299600-2299619 Msa0000910:CDS 65.0%
AGGGTCTTCCCTGTGCCTGG+AGG + chr1_1:2299611-2299630 None:intergenic 65.0%
GGTCGGGCAAGGGGTAGTAG+AGG - chr1_1:2299800-2299819 Msa0000910:exon 65.0%
CGGGCAAGGGGTAGTAGAGG+CGG - chr1_1:2299803-2299822 Msa0000910:five_prime_UTR 65.0%
CCAAGAGCCGATGATCCGCG+AGG + chr1_1:2300355-2300374 None:intergenic 65.0%
!! CCTCGCGGATCATCGGCTCT+TGG - chr1_1:2300352-2300371 Msa0000910:intron 65.0%
GTCGCCGTCACCGGAGACTG+AGG + chr1_1:2297339-2297358 None:intergenic 70.0%
CACCCCATTGTCGGCGGCGA+TGG - chr1_1:2298716-2298735 Msa0000910:CDS 70.0%
CGCCATCGCCGCCGACAATG+GGG + chr1_1:2298721-2298740 None:intergenic 70.0%
! CTGGTGGGTCCTCCAGGCAC+AGG - chr1_1:2299599-2299618 Msa0000910:CDS 70.0%
CTCGGCAGCCCGACCACCAA+GGG + chr1_1:2300449-2300468 None:intergenic 70.0%
TCGCTCACGCGTCGCCGCAC+CGG + chr1_1:2297393-2297412 None:intergenic 75.0%
GCTCGGCAGCCCGACCACCA+AGG + chr1_1:2300450-2300469 None:intergenic 75.0%
TGGTGGTCGGGCTGCCGAGC+AGG - chr1_1:2300450-2300469 Msa0000910:intron 75.0%
!! CTCCGGTGACGGCGACGGCG+AGG - chr1_1:2297343-2297362 Msa0000910:three_prime_UTR 80.0%
! CGCCTCGCCGTCGCCGTCAC+CGG + chr1_1:2297348-2297367 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 2297298 2301110 2297298 ID=Msa0000910;Name=Msa0000910
chr1_1 mRNA 2297298 2301110 2297298 ID=Msa0000910-mRNA-1;Parent=Msa0000910;Name=Msa0000910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=310|1|1|1|0.5|0.33|3|246|702
chr1_1 exon 2297298 2298932 2297298 ID=Msa0000910-mRNA-1:exon:512;Parent=Msa0000910-mRNA-1
chr1_1 exon 2299083 2299888 2299083 ID=Msa0000910-mRNA-1:exon:511;Parent=Msa0000910-mRNA-1
chr1_1 exon 2300887 2301110 2300887 ID=Msa0000910-mRNA-1:exon:510;Parent=Msa0000910-mRNA-1
chr1_1 five_prime_UTR 2300887 2301110 2300887 ID=Msa0000910-mRNA-1:five_prime_utr;Parent=Msa0000910-mRNA-1
chr1_1 five_prime_UTR 2299803 2299888 2299803 ID=Msa0000910-mRNA-1:five_prime_utr;Parent=Msa0000910-mRNA-1
chr1_1 CDS 2299083 2299802 2299083 ID=Msa0000910-mRNA-1:cds;Parent=Msa0000910-mRNA-1
chr1_1 CDS 2297544 2298932 2297544 ID=Msa0000910-mRNA-1:cds;Parent=Msa0000910-mRNA-1
chr1_1 three_prime_UTR 2297298 2297543 2297298 ID=Msa0000910-mRNA-1:three_prime_utr;Parent=Msa0000910-mRNA-1
Gene Sequence

>Msa0000910

ATGGGAAACGATAAGAAAAAAACGAATCGAAAGAAGAAACAAAGTCAAACACAGAAGATGAAGGAAGGAAGCTTTCAAGAAGCATTGATGAAACAAATTCAAGAATTTCGCACCCCATTGTCGGCGGCGATGGCGATGATACTGATGATGGGGATAACTCTTTCTATCTTATATTTTGATACTGGGAAGCAGCAGCAGCAGATTAGCTTTCAGGAGTTTATGAATAAGCTTTTGGAACCAGGATTGGTAGATCATATTGTTGTCTCCGACAAAAATGTTGCCCAGATATATGTTTTGAACTCTCCTCGTAATCAAACAGAAACGAACTCTCCTCGTAATCAAACAGAAACGAACTCTCCTCGTAATCAAACAGATACGAACTCTCCTCGTAATCAAACAGAAACAGACGGTGAAGAAGAAACCCTTCCTGCGAAGGGATATGGTGGGCAATATAAATATTATTTCAATATTGGGAATGTCTTTACTTTTGAGGAGAAATTAGAGAGAGCTCAAATAGCACTGGGTGTTGACCATCATGATTTTGTACCTGTTACCTATTCTTCTGAAATTGGCTGGCACCTGGAGTTCTTGACATTCATTCAACACCTGTTGCCTTTGGCATTTCTCATCTATATGGTTGCCGGTGGTAAGGGTCCTTTTGGAGTCTTTAACATCGGAAAACCACATTTTACTAAAGTAGACAAAGACGCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAGTCCTAAGAAATACCAAGAGCTTGGTGCCAAAATTCCAAAAGGTGCTCTTCTGGTGGGTCCTCCAGGCACAGGGAAGACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTGCCATTTCTCTCAATATCCGGTTCTGATTTCTTAGAACTGTTTGTTGGTGTTGGATCATCTAGAGTGAGAAACTTGTTTAAGGAAGCAAGGAAGTGTGCTCCTAGTATAGTATTTATTGATGAAATTGATGCAATTGGTCGGGCAAGGGGTAGTAGAGGCGGAGATCGTGCAAATGATGAACGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGCTTTGGAACCACTGCTGGAGTTGTTGTGCTGGCAGGTACAAATAGACCTGATGTATTAGACAAAGCCCTACTTAGACCAGGGCGTTTTGACCGCCAAATAACAATTGATAAACCTGACATCAAAGGTCGTGACCAGATATTTCAGATTTACTTGAAAGGGATCAAACTTGACCACGAGCCTTCATATTATTCACGTAAGCTTGCATCCCTTACTCCAGGATTTGCTGGAGCGGATATTGCTAATGTTTGCAATGAAGCTGCTCTGATTGCTGCAAGGACTGATGAAGCACACGTCACACATGATCATTTCGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGTAAGCTGCAAAGACGCACCGTTGCTTACCATGAAGCAGGTCATGCTGTTGCAGGTTGGTTCTTGGAACATACTGACCCATTGTTGAAAGTAACTATTGTTCCTCGCGGATCATCGGCTCTTGGGTTTGCCCAGTATGTTCCGAATGAGAACCTTCTCATGACAAAGGAACAACTTTTCGATAGGACTTGTATGACCCTTGGTGGTCGGGCTGCCGAGCAGGTTCTCATTGGAACAATCTCTACAGGAGCACAAGATGACTTGGAGAAAGTTACCAAGATGACATATGCTCAAGTAGCCGTCTATGGTTTCAGCGAAAAAGTGGGCCTCCTCTCTTTCCCTCAAAAAGAGGACTCGTTAGAGATGTCTAAACCATACAGCAACAAAACTGGTGCAATCATTGATAATGAAGTGCGAGAATGGGTGGACAAAGCATATGAACGTACTGTGAAGCTTATAGAGAAAGAGAAGGAGAAAGTAGCTCAACTTGCGGAGTTGCTGCTTGAAAAAGAAGTTCTTCACCAAGATGACTTGCTTCCAATCTTGGGTGTGCGACCCTTCAAGAGTACTGAATCACCAATTATGATAGAGCCTGAGGTTGTTCCACATAGTTGA
Protein sequence

>Msa0000910

MGNDKKKTNRKKKQSQTQKMKEGSFQEALMKQIQEFRTPLSAAMAMILMMGITLSILYFDTGKQQQQISFQEFMNKLLEPGLVDHIVVSDKNVAQIYVLNSPRNQTETNSPRNQTETNSPRNQTDTNSPRNQTETDGEEETLPAKGYGGQYKYYFNIGNVFTFEEKLERAQIALGVDHHDFVPVTYSSEIGWHLEFLTFIQHLLPLAFLIYMVAGGKGPFGVFNIGKPHFTKVDKDAKNKVYFKDVAGCDEAKQEIMEFVHFLKSPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFLELFVGVGSSRVRNLFKEARKCAPSIVFIDEIDAIGRARGSRGGDRANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDVLDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKGIKLDHEPSYYSRKLASLTPGFAGADIANVCNEAALIAARTDEAHVTHDHFEAAIDRIIGGLEKKNKVISKLQRRTVAYHEAGHAVAGWFLEHTDPLLKVTIVPRGSSALGFAQYVPNENLLMTKEQLFDRTCMTLGGRAAEQVLIGTISTGAQDDLEKVTKMTYAQVAVYGFSEKVGLLSFPQKEDSLEMSKPYSNKTGAIIDNEVREWVDKAYERTVKLIEKEKEKVAQLAELLLEKEVLHQDDLLPILGVRPFKSTESPIMIEPEVVPHS*