AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001450 MtrunA17_Chr3g0145771 100.000 151 0 0 1 151 66 216 3.73e-111 314
Msa0001450 MtrunA17_Chr3g0139231 72.143 140 33 2 1 137 1 137 6.88e-71 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001450 AT1G02140.1 88.591 149 17 0 3 151 2 150 8.19e-99 281

Find 65 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTGCTTCCATTGT+TGG 0.189002 1_1:+3154549 Msa0001450:three_prime_UTR
TAGTTTCGAGTTTGTCTTCT+TGG 0.210632 1_1:+3154381 Msa0001450:three_prime_UTR
GGTGGAACCAGGTTAATATT+AGG 0.283202 1_1:-3154649 None:intergenic
TTCAAACTTCATTAGCTAAA+GGG 0.324358 1_1:-3154430 None:intergenic
AAACTCTGGTGGTTGCTTGC+TGG 0.326575 1_1:+3153232 Msa0001450:five_prime_UTR
TCCTTTACTACTTCCAAGAT+TGG 0.348725 1_1:+3153700 Msa0001450:CDS
TAAAAGATGCGAAGGCCTTC+AGG 0.353524 1_1:-3153754 None:intergenic
AAAGGTTATCCATTCAAATC+AGG 0.354030 1_1:-3154479 None:intergenic
CAGGAACTTGAGATTGTTAT+GGG 0.355218 1_1:+3153664 Msa0001450:CDS
TCAGGAACTTGAGATTGTTA+TGG 0.374992 1_1:+3153663 Msa0001450:CDS
GGCGGTTATTGTTGATCATC+AGG 0.409643 1_1:+3153268 Msa0001450:five_prime_UTR
TTTCAAACTTCATTAGCTAA+AGG 0.412577 1_1:-3154431 None:intergenic
CGACCAACACGGTCTGGTTC+AGG 0.414314 1_1:-3153640 None:intergenic
GAGATACTACGTTGGTCATA+AGG 0.416637 1_1:+3153335 Msa0001450:CDS
GTGGAACCAGGTTAATATTA+GGG 0.417421 1_1:-3154648 None:intergenic
TATCATACAACACTAAATAC+TGG 0.420013 1_1:-3154602 None:intergenic
ATCAACAAGAGAACCAATCT+TGG 0.427300 1_1:-3153713 None:intergenic
TAATAGTGAACATCTTATAT+AGG 0.432174 1_1:-3154360 None:intergenic
ACCAGACCGTGTTGGTCGTC+AGG 0.432239 1_1:+3153645 Msa0001450:CDS
GTTGGTCATAAGGGTAAATT+CGG 0.435065 1_1:+3153345 Msa0001450:CDS
AATATGTATCGGTGATGAAC+AGG 0.447090 1_1:+3154452 Msa0001450:three_prime_UTR
TCGAGTTGGGCCTTTCCACC+AGG 0.453183 1_1:-3153158 None:intergenic
TCCTGACGACCAACACGGTC+TGG 0.460919 1_1:-3153646 None:intergenic
CAGACAGCATGCTCCAACAA+TGG 0.471628 1_1:-3154562 None:intergenic
ATAAACCTCCTTACGAATGA+TGG 0.480860 1_1:-3153445 None:intergenic
GGCTACAAAAGAAGCGGGCC+TGG 0.482296 1_1:+3153140 None:intergenic
ACCAATCTTGGAAGTAGTAA+AGG 0.483775 1_1:-3153701 None:intergenic
ATCAATCATGTGGTGGAACC+AGG 0.493929 1_1:-3154660 None:intergenic
AGATACTACGTTGGTCATAA+GGG 0.498454 1_1:+3153336 Msa0001450:CDS
TGAAGGAGGATGATAACAAC+TGG 0.499238 1_1:+3153617 Msa0001450:CDS
CCACCACATGATTGATGACA+TGG 0.502437 1_1:+3154667 Msa0001450:three_prime_UTR
AAGAAGCGGGCCTGGTGGAA+AGG 0.505575 1_1:+3153148 Msa0001450:five_prime_UTR
TCAAACTTCATTAGCTAAAG+GGG 0.509998 1_1:-3154429 None:intergenic
ACAGGAAAACCTGATTTGAA+TGG 0.511064 1_1:+3154470 Msa0001450:three_prime_UTR
GTTGGAGCATGCTGTCTGTA+TGG 0.513636 1_1:+3154567 Msa0001450:three_prime_UTR
TGTTGATCATCAGGATCAGT+AGG 0.531236 1_1:+3153277 Msa0001450:five_prime_UTR
GATCATCAGGATCAGTAGGA+TGG 0.543475 1_1:+3153281 Msa0001450:exon
AGTAAGGGCTACAAAAGAAG+CGG 0.544722 1_1:+3153134 None:intergenic
TCTACTCCCTAATATTAACC+TGG 0.548482 1_1:+3154642 Msa0001450:three_prime_UTR
TTTGGAGTTTGAGTTCCGTC+CGG 0.556662 1_1:+3153377 Msa0001450:CDS
CGACACTCACGAAGAACAGC+AGG 0.558457 1_1:-3153474 None:intergenic
TCAACAACAACAGATTATGA+AGG 0.558662 1_1:+3153600 Msa0001450:intron
CAAGATAGTAAAAGATGCGA+AGG 0.565769 1_1:-3153762 None:intergenic
ATCATCAGGATCAGTAGGAT+GGG 0.566097 1_1:+3153282 Msa0001450:exon
CGATACCATCATTCGTAAGG+AGG 0.567991 1_1:+3153440 Msa0001450:CDS
GAGTTTGAGTTCCGTCCGGA+TGG 0.569248 1_1:+3153381 Msa0001450:CDS
ATGAAGTTTGAAATATGTAT+CGG 0.572232 1_1:+3154441 Msa0001450:three_prime_UTR
AAAGCAAAGATCTGGTACAA+AGG 0.574547 1_1:-3154497 None:intergenic
AAACGATACCATCATTCGTA+AGG 0.579284 1_1:+3153437 Msa0001450:CDS
CTCGCAGTCATATTAAACTC+TGG 0.583050 1_1:+3153218 Msa0001450:five_prime_UTR
GTAAGGGCTACAAAAGAAGC+GGG 0.590136 1_1:+3153135 None:intergenic
CAAAGCAGTGCTGATCCTGA+AGG 0.593679 1_1:+3153739 Msa0001450:CDS
CTTGCTGGTTGAGAATCGAT+CGG 0.600812 1_1:+3153247 Msa0001450:five_prime_UTR
CCATGTCATCAATCATGTGG+TGG 0.605732 1_1:-3154667 None:intergenic
GCATAACGAAGCTTACCATC+CGG 0.616562 1_1:-3153396 None:intergenic
AATCCATGTCATCAATCATG+TGG 0.640325 1_1:-3154670 None:intergenic
ACAACAACAGATTATGAAGG+AGG 0.642882 1_1:+3153603 Msa0001450:intron
CAAGTTCCTGACGACCAACA+CGG 0.649649 1_1:-3153651 None:intergenic
AACGAAGCTTACCATCCGGA+CGG 0.661487 1_1:-3153392 None:intergenic
TACAAAAGAAGCGGGCCTGG+TGG 0.662815 1_1:+3153143 None:intergenic
GCAGTCATATTAAACTCTGG+TGG 0.677409 1_1:+3153221 Msa0001450:five_prime_UTR
TGGCCTGAACCAGACCGTGT+TGG 0.677826 1_1:+3153637 Msa0001450:CDS
GCTGGTTGAGAATCGATCGG+CGG 0.697178 1_1:+3153250 Msa0001450:five_prime_UTR
TCGTATTATTTCTGACAGCG+AGG 0.703758 1_1:+3153497 Msa0001450:CDS
AGGAACTTGAGATTGTTATG+GGG 0.708397 1_1:+3153665 Msa0001450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAAGCAATAATAAAAA+AGG - chr1_1:3153575-3153594 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr1_1:3154286-3154305 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr1_1:3154287-3154306 Msa0001450:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr1_1:3154509-3154528 Msa0001450:three_prime_UTR 15.0%
!! GTTATAAGCAATAATAAAAA+AGG - chr1_1:3153575-3153594 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr1_1:3154286-3154305 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr1_1:3154287-3154306 Msa0001450:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr1_1:3154509-3154528 Msa0001450:three_prime_UTR 15.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr1_1:3153566-3153585 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr1_1:3153567-3153586 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr1_1:3153568-3153587 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr1_1:3153569-3153588 None:intergenic 20.0%
!! TCAAGTATATTTGTGAATTT+AGG - chr1_1:3153918-3153937 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr1_1:3154162-3154181 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr1_1:3154163-3154182 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr1_1:3154363-3154382 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr1_1:3154441-3154460 Msa0001450:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr1_1:3154508-3154527 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr1_1:3154515-3154534 Msa0001450:three_prime_UTR 20.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr1_1:3153566-3153585 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr1_1:3153567-3153586 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr1_1:3153568-3153587 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr1_1:3153569-3153588 None:intergenic 20.0%
!! TCAAGTATATTTGTGAATTT+AGG - chr1_1:3153918-3153937 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr1_1:3154162-3154181 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr1_1:3154163-3154182 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr1_1:3154363-3154382 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr1_1:3154441-3154460 Msa0001450:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr1_1:3154508-3154527 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr1_1:3154515-3154534 Msa0001450:three_prime_UTR 20.0%
!! TAAATTCGGACATGAATTTT+TGG + chr1_1:3153359-3153378 Msa0001450:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr1_1:3153565-3153584 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr1_1:3153808-3153827 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr1_1:3153853-3153872 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr1_1:3153913-3153932 None:intergenic 25.0%
! TCATATATTGATACTTTAGC+TGG + chr1_1:3153948-3153967 Msa0001450:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr1_1:3153949-3153968 Msa0001450:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + chr1_1:3153973-3153992 Msa0001450:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr1_1:3154029-3154048 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr1_1:3154161-3154180 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr1_1:3154240-3154259 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr1_1:3154241-3154260 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr1_1:3154433-3154452 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr1_1:3154434-3154453 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr1_1:3154605-3154624 None:intergenic 25.0%
!! TAAATTCGGACATGAATTTT+TGG + chr1_1:3153359-3153378 Msa0001450:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr1_1:3153565-3153584 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr1_1:3153808-3153827 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr1_1:3153853-3153872 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr1_1:3153913-3153932 None:intergenic 25.0%
! TCATATATTGATACTTTAGC+TGG + chr1_1:3153948-3153967 Msa0001450:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr1_1:3153949-3153968 Msa0001450:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + chr1_1:3153973-3153992 Msa0001450:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr1_1:3154029-3154048 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr1_1:3154161-3154180 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr1_1:3154240-3154259 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr1_1:3154241-3154260 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr1_1:3154433-3154452 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr1_1:3154434-3154453 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr1_1:3154605-3154624 None:intergenic 25.0%
! TTTTACTTGAGATACTACGT+TGG + chr1_1:3153327-3153346 Msa0001450:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - chr1_1:3153430-3153449 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + chr1_1:3153600-3153619 Msa0001450:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr1_1:3153768-3153787 Msa0001450:CDS 30.0%
AAGTTCATGAAGGCAATTAT+CGG - chr1_1:3153843-3153862 None:intergenic 30.0%
TAACTCAAATTAAACTGACC+TGG + chr1_1:3153862-3153881 Msa0001450:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr1_1:3153883-3153902 None:intergenic 30.0%
CACAAATATACTTGAGACAA+TGG + chr1_1:3153923-3153942 Msa0001450:intron 30.0%
!! GCAAAGGAATTCTAAAGTAT+GGG - chr1_1:3154013-3154032 None:intergenic 30.0%
!! AGCAAAGGAATTCTAAAGTA+TGG - chr1_1:3154014-3154033 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr1_1:3154072-3154091 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr1_1:3154073-3154092 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr1_1:3154094-3154113 Msa0001450:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr1_1:3154095-3154114 Msa0001450:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr1_1:3154432-3154451 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr1_1:3154482-3154501 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr1_1:3154688-3154707 Msa0001450:three_prime_UTR 30.0%
! TTTTACTTGAGATACTACGT+TGG + chr1_1:3153327-3153346 Msa0001450:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - chr1_1:3153430-3153449 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + chr1_1:3153600-3153619 Msa0001450:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr1_1:3153768-3153787 Msa0001450:CDS 30.0%
AAGTTCATGAAGGCAATTAT+CGG - chr1_1:3153843-3153862 None:intergenic 30.0%
TAACTCAAATTAAACTGACC+TGG + chr1_1:3153862-3153881 Msa0001450:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr1_1:3153883-3153902 None:intergenic 30.0%
CACAAATATACTTGAGACAA+TGG + chr1_1:3153923-3153942 Msa0001450:intron 30.0%
!! GCAAAGGAATTCTAAAGTAT+GGG - chr1_1:3154013-3154032 None:intergenic 30.0%
!! AGCAAAGGAATTCTAAAGTA+TGG - chr1_1:3154014-3154033 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr1_1:3154072-3154091 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr1_1:3154073-3154092 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr1_1:3154094-3154113 Msa0001450:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr1_1:3154095-3154114 Msa0001450:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr1_1:3154432-3154451 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr1_1:3154482-3154501 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr1_1:3154688-3154707 Msa0001450:three_prime_UTR 30.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr1_1:3153174-3153193 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr1_1:3153175-3153194 None:intergenic 35.0%
AGATACTACGTTGGTCATAA+GGG + chr1_1:3153336-3153355 Msa0001450:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr1_1:3153345-3153364 Msa0001450:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + chr1_1:3153437-3153456 Msa0001450:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - chr1_1:3153448-3153467 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + chr1_1:3153603-3153622 Msa0001450:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr1_1:3153663-3153682 Msa0001450:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr1_1:3153664-3153683 Msa0001450:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr1_1:3153665-3153684 Msa0001450:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr1_1:3153700-3153719 Msa0001450:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr1_1:3153704-3153723 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr1_1:3153716-3153735 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr1_1:3153765-3153784 None:intergenic 35.0%
AAAATGACAACACATCATGG+GGG - chr1_1:3154070-3154089 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr1_1:3154071-3154090 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr1_1:3154102-3154121 Msa0001450:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr1_1:3154130-3154149 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr1_1:3154148-3154167 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr1_1:3154229-3154248 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr1_1:3154230-3154249 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr1_1:3154273-3154292 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr1_1:3154381-3154400 Msa0001450:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr1_1:3154452-3154471 Msa0001450:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr1_1:3154470-3154489 Msa0001450:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr1_1:3154500-3154519 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr1_1:3154642-3154661 Msa0001450:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr1_1:3154651-3154670 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr1_1:3154673-3154692 None:intergenic 35.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr1_1:3153174-3153193 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr1_1:3153175-3153194 None:intergenic 35.0%
AGATACTACGTTGGTCATAA+GGG + chr1_1:3153336-3153355 Msa0001450:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr1_1:3153345-3153364 Msa0001450:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + chr1_1:3153437-3153456 Msa0001450:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - chr1_1:3153448-3153467 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + chr1_1:3153603-3153622 Msa0001450:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr1_1:3153663-3153682 Msa0001450:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr1_1:3153664-3153683 Msa0001450:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr1_1:3153665-3153684 Msa0001450:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr1_1:3153700-3153719 Msa0001450:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr1_1:3153704-3153723 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr1_1:3153716-3153735 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr1_1:3153765-3153784 None:intergenic 35.0%
AAAATGACAACACATCATGG+GGG - chr1_1:3154070-3154089 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr1_1:3154071-3154090 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr1_1:3154102-3154121 Msa0001450:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr1_1:3154130-3154149 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr1_1:3154148-3154167 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr1_1:3154229-3154248 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr1_1:3154230-3154249 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr1_1:3154273-3154292 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr1_1:3154381-3154400 Msa0001450:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr1_1:3154452-3154471 Msa0001450:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr1_1:3154470-3154489 Msa0001450:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr1_1:3154500-3154519 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr1_1:3154642-3154661 Msa0001450:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr1_1:3154651-3154670 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr1_1:3154673-3154692 None:intergenic 35.0%
CTCGCAGTCATATTAAACTC+TGG + chr1_1:3153218-3153237 Msa0001450:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + chr1_1:3153221-3153240 Msa0001450:five_prime_UTR 40.0%
TGTTGATCATCAGGATCAGT+AGG + chr1_1:3153277-3153296 Msa0001450:five_prime_UTR 40.0%
ATCATCAGGATCAGTAGGAT+GGG + chr1_1:3153282-3153301 Msa0001450:exon 40.0%
GAGATACTACGTTGGTCATA+AGG + chr1_1:3153335-3153354 Msa0001450:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr1_1:3153497-3153516 Msa0001450:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr1_1:3153617-3153636 Msa0001450:CDS 40.0%
!! TATCGGTGCTTAAGCAGTTT+TGG - chr1_1:3153826-3153845 None:intergenic 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr1_1:3153907-3153926 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr1_1:3154254-3154273 Msa0001450:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr1_1:3154549-3154568 Msa0001450:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr1_1:3154652-3154671 None:intergenic 40.0%
CTCGCAGTCATATTAAACTC+TGG + chr1_1:3153218-3153237 Msa0001450:five_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG + chr1_1:3153221-3153240 Msa0001450:five_prime_UTR 40.0%
TGTTGATCATCAGGATCAGT+AGG + chr1_1:3153277-3153296 Msa0001450:five_prime_UTR 40.0%
ATCATCAGGATCAGTAGGAT+GGG + chr1_1:3153282-3153301 Msa0001450:exon 40.0%
GAGATACTACGTTGGTCATA+AGG + chr1_1:3153335-3153354 Msa0001450:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr1_1:3153497-3153516 Msa0001450:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr1_1:3153617-3153636 Msa0001450:CDS 40.0%
!! TATCGGTGCTTAAGCAGTTT+TGG - chr1_1:3153826-3153845 None:intergenic 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr1_1:3153907-3153926 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr1_1:3154254-3154273 Msa0001450:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr1_1:3154549-3154568 Msa0001450:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr1_1:3154652-3154671 None:intergenic 40.0%
! CTTGCTGGTTGAGAATCGAT+CGG + chr1_1:3153247-3153266 Msa0001450:five_prime_UTR 45.0%
GGCGGTTATTGTTGATCATC+AGG + chr1_1:3153268-3153287 Msa0001450:five_prime_UTR 45.0%
GATCATCAGGATCAGTAGGA+TGG + chr1_1:3153281-3153300 Msa0001450:exon 45.0%
! TTTGGAGTTTGAGTTCCGTC+CGG + chr1_1:3153377-3153396 Msa0001450:CDS 45.0%
GCATAACGAAGCTTACCATC+CGG - chr1_1:3153399-3153418 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + chr1_1:3153440-3153459 Msa0001450:CDS 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr1_1:3153554-3153573 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr1_1:3153555-3153574 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr1_1:3153757-3153776 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr1_1:3154113-3154132 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr1_1:3154663-3154682 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr1_1:3154670-3154689 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr1_1:3154667-3154686 Msa0001450:three_prime_UTR 45.0%
! CTTGCTGGTTGAGAATCGAT+CGG + chr1_1:3153247-3153266 Msa0001450:five_prime_UTR 45.0%
GGCGGTTATTGTTGATCATC+AGG + chr1_1:3153268-3153287 Msa0001450:five_prime_UTR 45.0%
GATCATCAGGATCAGTAGGA+TGG + chr1_1:3153281-3153300 Msa0001450:exon 45.0%
! TTTGGAGTTTGAGTTCCGTC+CGG + chr1_1:3153377-3153396 Msa0001450:CDS 45.0%
GCATAACGAAGCTTACCATC+CGG - chr1_1:3153399-3153418 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + chr1_1:3153440-3153459 Msa0001450:CDS 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr1_1:3153554-3153573 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr1_1:3153555-3153574 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr1_1:3153757-3153776 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr1_1:3154113-3154132 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr1_1:3154663-3154682 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr1_1:3154670-3154689 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr1_1:3154667-3154686 Msa0001450:three_prime_UTR 45.0%
AAACTCTGGTGGTTGCTTGC+TGG + chr1_1:3153232-3153251 Msa0001450:five_prime_UTR 50.0%
AACGAAGCTTACCATCCGGA+CGG - chr1_1:3153395-3153414 None:intergenic 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr1_1:3153548-3153567 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr1_1:3153549-3153568 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr1_1:3153654-3153673 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr1_1:3153739-3153758 Msa0001450:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr1_1:3154225-3154244 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr1_1:3154565-3154584 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr1_1:3154567-3154586 Msa0001450:three_prime_UTR 50.0%
AAACTCTGGTGGTTGCTTGC+TGG + chr1_1:3153232-3153251 Msa0001450:five_prime_UTR 50.0%
AACGAAGCTTACCATCCGGA+CGG - chr1_1:3153395-3153414 None:intergenic 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr1_1:3153548-3153567 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr1_1:3153549-3153568 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr1_1:3153654-3153673 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr1_1:3153739-3153758 Msa0001450:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr1_1:3154225-3154244 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr1_1:3154565-3154584 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr1_1:3154567-3154586 Msa0001450:three_prime_UTR 50.0%
GCTGGTTGAGAATCGATCGG+CGG + chr1_1:3153250-3153269 Msa0001450:five_prime_UTR 55.0%
! GAGTTTGAGTTCCGTCCGGA+TGG + chr1_1:3153381-3153400 Msa0001450:CDS 55.0%
CGACACTCACGAAGAACAGC+AGG - chr1_1:3153477-3153496 None:intergenic 55.0%
GCTGGTTGAGAATCGATCGG+CGG + chr1_1:3153250-3153269 Msa0001450:five_prime_UTR 55.0%
! GAGTTTGAGTTCCGTCCGGA+TGG + chr1_1:3153381-3153400 Msa0001450:CDS 55.0%
CGACACTCACGAAGAACAGC+AGG - chr1_1:3153477-3153496 None:intergenic 55.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr1_1:3153148-3153167 Msa0001450:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr1_1:3153161-3153180 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr1_1:3153637-3153656 Msa0001450:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr1_1:3153643-3153662 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr1_1:3153645-3153664 Msa0001450:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr1_1:3153649-3153668 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr1_1:3154221-3154240 None:intergenic 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr1_1:3153148-3153167 Msa0001450:five_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr1_1:3153161-3153180 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr1_1:3153637-3153656 Msa0001450:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr1_1:3153643-3153662 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr1_1:3153645-3153664 Msa0001450:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr1_1:3153649-3153668 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr1_1:3154221-3154240 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3153145 3154714 3153145 ID=Msa0001450;Name=Msa0001450
chr1_1 mRNA 3153145 3154714 3153145 ID=Msa0001450-mRNA-1;Parent=Msa0001450;Name=Msa0001450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=155|1|1|1|1|1|3|346|151
chr1_1 exon 3153145 3153518 3153145 ID=Msa0001450-mRNA-1:exon:729;Parent=Msa0001450-mRNA-1
chr1_1 exon 3153613 3153789 3153613 ID=Msa0001450-mRNA-1:exon:730;Parent=Msa0001450-mRNA-1
chr1_1 exon 3154309 3154714 3154309 ID=Msa0001450-mRNA-1:exon:731;Parent=Msa0001450-mRNA-1
chr1_1 five_prime_UTR 3153145 3153299 3153145 ID=Msa0001450-mRNA-1:five_prime_utr;Parent=Msa0001450-mRNA-1
chr1_1 CDS 3153300 3153518 3153300 ID=Msa0001450-mRNA-1:cds;Parent=Msa0001450-mRNA-1
chr1_1 CDS 3153613 3153789 3153613 ID=Msa0001450-mRNA-1:cds;Parent=Msa0001450-mRNA-1
chr1_1 CDS 3154309 3154368 3154309 ID=Msa0001450-mRNA-1:cds;Parent=Msa0001450-mRNA-1
chr1_1 three_prime_UTR 3154369 3154714 3154369 ID=Msa0001450-mRNA-1:three_prime_utr;Parent=Msa0001450-mRNA-1
Gene Sequence

>Msa0001450

ATGGGAAGCGAAGAAGAGAATGCAGAGTTTTACTTGAGATACTACGTTGGTCATAAGGGTAAATTCGGACATGAATTTTTGGAGTTTGAGTTCCGTCCGGATGGTAAGCTTCGTTATGCTAACAATTCCAATTACAAAAACGATACCATCATTCGTAAGGAGGTTTATCTTACTCCTGCTGTTCTTCGTGAGTGTCGTCGTATTATTTCTGACAGCGAGATTATGAAGGAGGATGATAACAACTGGCCTGAACCAGACCGTGTTGGTCGTCAGGAACTTGAGATTGTTATGGGGAATGAGCATATCTCCTTTACTACTTCCAAGATTGGTTCTCTTGTTGATGTTCAAAGCAGTGCTGATCCTGAAGGCCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA

Protein sequence

>Msa0001450

MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*