Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521140 | XP_003603332.1 | 93.930 | 313 | 19 | 0 | 1 | 313 | 1 | 313 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521140 | sp|D2XNQ9|FLOT2_MEDTR | 93.930 | 313 | 19 | 0 | 1 | 313 | 1 | 313 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521140 | G7JAE4 | 93.930 | 313 | 19 | 0 | 1 | 313 | 1 | 313 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092960 | Msa0521140 | 0.950400 | 1.781402e-108 | -8.615850e-47 |
| Msa0435010 | Msa0521140 | 0.813850 | 2.077108e-51 | -8.615850e-47 |
| Msa0476780 | Msa0521140 | 0.911488 | 5.746548e-83 | -8.615850e-47 |
| Msa0479030 | Msa0521140 | 0.822165 | 2.740408e-53 | -8.615850e-47 |
| Msa0479100 | Msa0521140 | 0.824823 | 6.550124e-54 | -8.615850e-47 |
| Msa0521140 | Msa0709660 | 0.826784 | 2.243075e-54 | -8.615850e-47 |
| Msa0521140 | Msa0829060 | 0.961705 | 5.175987e-120 | -8.615850e-47 |
| Msa0521140 | Msa1252070 | 0.801643 | 8.175179e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521140 | MtrunA17_Chr3g0137261 | 93.930 | 313 | 19 | 0 | 1 | 313 | 1 | 313 | 0.0 | 578 |
| Msa0521140 | MtrunA17_Chr1g0192071 | 94.569 | 313 | 17 | 0 | 1 | 313 | 1 | 313 | 0.0 | 577 |
| Msa0521140 | MtrunA17_Chr3g0137321 | 90.032 | 311 | 31 | 0 | 3 | 313 | 1 | 311 | 0.0 | 575 |
| Msa0521140 | MtrunA17_Chr3g0137341 | 92.605 | 311 | 23 | 0 | 3 | 313 | 1 | 311 | 0.0 | 564 |
| Msa0521140 | MtrunA17_Chr3g0137271 | 92.926 | 311 | 22 | 0 | 3 | 313 | 1 | 311 | 0.0 | 540 |
| Msa0521140 | MtrunA17_Chr1g0186201 | 89.711 | 311 | 32 | 0 | 3 | 313 | 1 | 311 | 0.0 | 528 |
| Msa0521140 | MtrunA17_Chr1g0212211 | 78.354 | 328 | 61 | 3 | 3 | 327 | 1 | 321 | 1.42e-174 | 494 |
| Msa0521140 | MtrunA17_Chr1g0184991 | 89.474 | 247 | 26 | 0 | 3 | 249 | 1 | 247 | 8.87e-168 | 466 |
| Msa0521140 | MtrunA17_Chr8g0364981 | 83.137 | 255 | 24 | 2 | 54 | 307 | 1 | 237 | 6.44e-125 | 363 |
| Msa0521140 | MtrunA17_Chr3g0137311 | 94.161 | 137 | 8 | 0 | 1 | 137 | 17 | 153 | 2.42e-91 | 269 |
| Msa0521140 | MtrunA17_Chr3g0110461 | 80.952 | 42 | 8 | 0 | 115 | 156 | 1 | 42 | 5.50e-16 | 71.2 |
| Msa0521140 | MtrunA17_Chr8g0364991 | 71.795 | 39 | 11 | 0 | 3 | 41 | 1 | 39 | 7.61e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0521140 | AT5G25250.1 | 80.707 | 311 | 60 | 0 | 3 | 313 | 1 | 311 | 0.0 | 526 |
| Msa0521140 | AT5G25260.1 | 80.386 | 311 | 61 | 0 | 3 | 313 | 1 | 311 | 0.0 | 521 |
| Msa0521140 | AT5G64870.1 | 78.387 | 310 | 67 | 0 | 4 | 313 | 3 | 312 | 2.16e-169 | 479 |
Find 78 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAGTATTTCTCATATT+TGG | 0.044243 | 3_4:-73789677 | Msa0521140:CDS |
| CAACTTGAGTTGAATCAATT+TGG | 0.187809 | 3_4:-73789748 | Msa0521140:CDS |
| CATGAGTATTTCTCATATTT+GGG | 0.283314 | 3_4:-73789676 | Msa0521140:CDS |
| CGAAGAAGGCCGTGGCTCTA+AGG | 0.294288 | 3_4:-73789348 | Msa0521140:CDS |
| AACAAGTTCATTAACATGAT+TGG | 0.311801 | 3_4:+73789876 | None:intergenic |
| GCTAAGATGAAAGGTGAAAT+TGG | 0.319472 | 3_4:-73789601 | Msa0521140:CDS |
| CTCCCCGCTGTCTTCACAAT+TGG | 0.348065 | 3_4:-73789967 | Msa0521140:CDS |
| ACTTCGAAGGTGTAGTTTAC+CGG | 0.380695 | 3_4:+73790024 | None:intergenic |
| GTTATTTCGCTGCAGAGAAC+TGG | 0.390936 | 3_4:-73789517 | Msa0521140:CDS |
| GTGAAATTGGTTCGAAATTG+AGG | 0.404543 | 3_4:-73789588 | Msa0521140:CDS |
| TCAGAATACCTTGTGATAAC+AGG | 0.405430 | 3_4:-73790126 | Msa0521140:CDS |
| TGGTCCTCGTGTTGACGATC+AGG | 0.407219 | 3_4:-73789947 | Msa0521140:CDS |
| AGCTTGGACTAAGGCGGCTC+AGG | 0.418423 | 3_4:-73789386 | Msa0521140:CDS |
| GAAGAAGGCAGCTTGGACTA+AGG | 0.419386 | 3_4:-73789395 | Msa0521140:CDS |
| CATGTTAATGAACTTGTTCA+AGG | 0.419850 | 3_4:-73789871 | Msa0521140:CDS |
| CGGTCAATCCTGCTCCGTCT+TGG | 0.421815 | 3_4:-73790055 | Msa0521140:CDS |
| ATCATGCGGTGAAATAAGTT+TGG | 0.453058 | 3_4:+73789906 | None:intergenic |
| CAATGCGAATGTTAAGCAAC+TGG | 0.456641 | 3_4:-73789713 | Msa0521140:CDS |
| CAAGACGGAGCAGGATTGAC+CGG | 0.473034 | 3_4:+73790056 | None:intergenic |
| AAGAAAGCATGGATTATTCC+CGG | 0.476347 | 3_4:-73790075 | Msa0521140:CDS |
| GGCTGAAGTAGAGGCGAAGA+AGG | 0.482630 | 3_4:-73789362 | Msa0521140:CDS |
| GGACCAATTGTGAAGACAGC+GGG | 0.501529 | 3_4:+73789964 | None:intergenic |
| TTGGACTAAGGCGGCTCAGG+TGG | 0.505461 | 3_4:-73789383 | Msa0521140:CDS |
| TGGAAGCAGCGAATCAAGCT+AGG | 0.506083 | 3_4:-73789639 | Msa0521140:CDS |
| CAGTGTTCAATATGAAACTA+AGG | 0.509433 | 3_4:-73789242 | Msa0521140:CDS |
| TGCTTCCATGACGATGGAGG+AGG | 0.512100 | 3_4:-73789818 | Msa0521140:CDS |
| CTCCGTCTTGGACCTCTCAC+CGG | 0.514067 | 3_4:-73790043 | Msa0521140:CDS |
| TTCTGAGTTGGCTAAGAAGA+AGG | 0.515574 | 3_4:-73789410 | Msa0521140:CDS |
| CTAAGGGATGCTGAGTTACA+AGG | 0.517627 | 3_4:-73789331 | Msa0521140:CDS |
| AAGACAGCGGGGAGAACAAA+AGG | 0.520506 | 3_4:+73789976 | None:intergenic |
| AAGCAACTGGTGGATGTGCC+TGG | 0.524212 | 3_4:-73789700 | Msa0521140:CDS |
| GAAGAAGGCCGTGGCTCTAA+GGG | 0.526932 | 3_4:-73789347 | Msa0521140:CDS |
| GAGAACAAAAGGAAGTTTCT+CGG | 0.527868 | 3_4:+73789987 | None:intergenic |
| TAAGTTTGGCGTATTTGAGA+AGG | 0.534048 | 3_4:+73789920 | None:intergenic |
| TGGCTAAGAAGAAGGCAGCT+TGG | 0.534710 | 3_4:-73789402 | Msa0521140:CDS |
| TGAGAGGTCCAAGACGGAGC+AGG | 0.535402 | 3_4:+73790047 | None:intergenic |
| GAGAGAGGCTGAAGTGGCGG+AGG | 0.538584 | 3_4:-73789437 | Msa0521140:CDS |
| GGCTCAGGTGGCTGAAGTAG+AGG | 0.543694 | 3_4:-73789371 | Msa0521140:CDS |
| ATTGAACACTGGCTTTGCTA+AGG | 0.543911 | 3_4:+73789254 | None:intergenic |
| GAGAACTGGAGAGGGTGACA+AGG | 0.548225 | 3_4:-73789503 | Msa0521140:CDS |
| GAATCAGAGAGAGGCTGAAG+TGG | 0.550154 | 3_4:-73789443 | Msa0521140:CDS |
| CTTAGTTTCATATTGAACAC+TGG | 0.552173 | 3_4:+73789243 | None:intergenic |
| GGCGGAGGCTAATTCTGAGT+TGG | 0.552406 | 3_4:-73789422 | Msa0521140:CDS |
| TAAAGTGAGGACTGAAGTGA+AGG | 0.556664 | 3_4:-73789473 | Msa0521140:CDS |
| TCAGAGAGAGGCTGAAGTGG+CGG | 0.571247 | 3_4:-73789440 | Msa0521140:CDS |
| TAAAACTCGCAAAGAAAGCA+TGG | 0.572673 | 3_4:-73790086 | Msa0521140:CDS |
| GAAAACCTCCTCCATCGTCA+TGG | 0.573319 | 3_4:+73789813 | None:intergenic |
| AGTAGAGGCGAAGAAGGCCG+TGG | 0.579775 | 3_4:-73789356 | Msa0521140:CDS |
| AACTGGAGAGGGTGACAAGG+AGG | 0.588193 | 3_4:-73789500 | Msa0521140:CDS |
| AAGACGGAGCAGGATTGACC+GGG | 0.589066 | 3_4:+73790057 | None:intergenic |
| ACTCATAGCTTGAACTTCGA+AGG | 0.602674 | 3_4:+73790011 | None:intergenic |
| CTTGTTCAAGGAATCATCGA+AGG | 0.603463 | 3_4:-73789859 | Msa0521140:CDS |
| ATTGGTTCGAAATTGAGGCA+AGG | 0.608694 | 3_4:-73789583 | Msa0521140:CDS |
| AGTTACAAGGTGAAGTTGAG+AGG | 0.609202 | 3_4:-73789318 | Msa0521140:CDS |
| GTGGCAGAAGCTAAGATGAA+AGG | 0.614706 | 3_4:-73789610 | Msa0521140:CDS |
| AGGTGTAGTTTACCGGTGAG+AGG | 0.619207 | 3_4:+73790031 | None:intergenic |
| TGCTGCTTCCATGACGATGG+AGG | 0.620084 | 3_4:-73789821 | Msa0521140:CDS |
| TTCGCTGCAGAGAACTGGAG+AGG | 0.620124 | 3_4:-73789512 | Msa0521140:CDS |
| TTTGGGACAAAAGACGCAGA+TGG | 0.620243 | 3_4:-73789659 | Msa0521140:CDS |
| TTGTTCAAGGAATCATCGAA+GGG | 0.626113 | 3_4:-73789858 | Msa0521140:CDS |
| GGGACTTTATCGTGTAGCAA+AGG | 0.633548 | 3_4:-73790151 | Msa0521140:CDS |
| ACTGGAGAGGGTGACAAGGA+GGG | 0.634623 | 3_4:-73789499 | Msa0521140:CDS |
| TATGAGAAATACTCATGACC+AGG | 0.635081 | 3_4:+73789682 | None:intergenic |
| GGAAGCAGCGAATCAAGCTA+GGG | 0.637623 | 3_4:-73789638 | Msa0521140:CDS |
| CTCAGCATCCCTTAGAGCCA+CGG | 0.641954 | 3_4:+73789339 | None:intergenic |
| ACTTGCTGCTTCCATGACGA+TGG | 0.648427 | 3_4:-73789824 | Msa0521140:CDS |
| TCGCTGCAGAGAACTGGAGA+GGG | 0.653793 | 3_4:-73789511 | Msa0521140:CDS |
| TACCGGTGAGAGGTCCAAGA+CGG | 0.656829 | 3_4:+73790041 | None:intergenic |
| TGCGAATGTTAAGCAACTGG+TGG | 0.658886 | 3_4:-73789710 | Msa0521140:CDS |
| GAATCAAGCTAGGGTTGACG+TGG | 0.682564 | 3_4:-73789629 | Msa0521140:CDS |
| CTTTCCTGATCGTCAACACG+AGG | 0.689163 | 3_4:+73789943 | None:intergenic |
| ACAAGGAGGGAATTAAAGTG+AGG | 0.693697 | 3_4:-73789486 | Msa0521140:CDS |
| TTAGAATACCTGTTATCACA+AGG | 0.699616 | 3_4:+73790118 | None:intergenic |
| TGTTCAAGGAATCATCGAAG+GGG | 0.712596 | 3_4:-73789857 | Msa0521140:CDS |
| GAAGGCAGCTTGGACTAAGG+CGG | 0.713400 | 3_4:-73789392 | Msa0521140:CDS |
| GACCAATTGTGAAGACAGCG+GGG | 0.714278 | 3_4:+73789965 | None:intergenic |
| AGGACCAATTGTGAAGACAG+CGG | 0.726189 | 3_4:+73789963 | None:intergenic |
| TGATTGGAGTGTCTATCATG+CGG | 0.778717 | 3_4:+73789892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3_4:73789469-73789488 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3_4:73789665-73789684 | Msa0521140:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3_4:73789666-73789685 | Msa0521140:CDS | 25.0% |
| ! | AACAAGTTCATTAACATGAT+TGG | + | chr3_4:73789469-73789488 | None:intergenic | 25.0% |
| ! | TCATGAGTATTTCTCATATT+TGG | - | chr3_4:73789665-73789684 | Msa0521140:CDS | 25.0% |
| ! | CATGAGTATTTCTCATATTT+GGG | - | chr3_4:73789666-73789685 | Msa0521140:CDS | 25.0% |
| TTAGAATACCTGTTATCACA+AGG | + | chr3_4:73789227-73789246 | None:intergenic | 30.0% | |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3_4:73789471-73789490 | Msa0521140:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | - | chr3_4:73789594-73789613 | Msa0521140:CDS | 30.0% |
| CTTAGTTTCATATTGAACAC+TGG | + | chr3_4:73790102-73790121 | None:intergenic | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | - | chr3_4:73790100-73790119 | Msa0521140:CDS | 30.0% | |
| TTAGAATACCTGTTATCACA+AGG | + | chr3_4:73789227-73789246 | None:intergenic | 30.0% | |
| ! | CATGTTAATGAACTTGTTCA+AGG | - | chr3_4:73789471-73789490 | Msa0521140:CDS | 30.0% |
| !! | CAACTTGAGTTGAATCAATT+TGG | - | chr3_4:73789594-73789613 | Msa0521140:CDS | 30.0% |
| CTTAGTTTCATATTGAACAC+TGG | + | chr3_4:73790102-73790121 | None:intergenic | 30.0% | |
| CAGTGTTCAATATGAAACTA+AGG | - | chr3_4:73790100-73790119 | Msa0521140:CDS | 30.0% | |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3_4:73789216-73789235 | Msa0521140:CDS | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr3_4:73789256-73789275 | Msa0521140:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr3_4:73789267-73789286 | Msa0521140:CDS | 35.0% |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3_4:73789358-73789377 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3_4:73789425-73789444 | None:intergenic | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3_4:73789439-73789458 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3_4:73789484-73789503 | Msa0521140:CDS | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr3_4:73789663-73789682 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3_4:73789741-73789760 | Msa0521140:CDS | 35.0% | |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3_4:73789754-73789773 | Msa0521140:CDS | 35.0% |
| TCAGAATACCTTGTGATAAC+AGG | - | chr3_4:73789216-73789235 | Msa0521140:CDS | 35.0% | |
| TAAAACTCGCAAAGAAAGCA+TGG | - | chr3_4:73789256-73789275 | Msa0521140:CDS | 35.0% | |
| ! | AAGAAAGCATGGATTATTCC+CGG | - | chr3_4:73789267-73789286 | Msa0521140:CDS | 35.0% |
| GAGAACAAAAGGAAGTTTCT+CGG | + | chr3_4:73789358-73789377 | None:intergenic | 35.0% | |
| TAAGTTTGGCGTATTTGAGA+AGG | + | chr3_4:73789425-73789444 | None:intergenic | 35.0% | |
| ATCATGCGGTGAAATAAGTT+TGG | + | chr3_4:73789439-73789458 | None:intergenic | 35.0% | |
| TTGTTCAAGGAATCATCGAA+GGG | - | chr3_4:73789484-73789503 | Msa0521140:CDS | 35.0% | |
| TATGAGAAATACTCATGACC+AGG | + | chr3_4:73789663-73789682 | None:intergenic | 35.0% | |
| GCTAAGATGAAAGGTGAAAT+TGG | - | chr3_4:73789741-73789760 | Msa0521140:CDS | 35.0% | |
| !! | GTGAAATTGGTTCGAAATTG+AGG | - | chr3_4:73789754-73789773 | Msa0521140:CDS | 35.0% |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr3_4:73789321-73789340 | None:intergenic | 40.0% |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr3_4:73789334-73789353 | None:intergenic | 40.0% | |
| ! | TGATTGGAGTGTCTATCATG+CGG | + | chr3_4:73789453-73789472 | None:intergenic | 40.0% |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3_4:73789483-73789502 | Msa0521140:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3_4:73789485-73789504 | Msa0521140:CDS | 40.0% | |
| CAATGCGAATGTTAAGCAAC+TGG | - | chr3_4:73789629-73789648 | Msa0521140:CDS | 40.0% | |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | - | chr3_4:73789759-73789778 | Msa0521140:CDS | 40.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3_4:73789856-73789875 | Msa0521140:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3_4:73789869-73789888 | Msa0521140:CDS | 40.0% | |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | - | chr3_4:73789890-73789909 | Msa0521140:CDS | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3_4:73789932-73789951 | Msa0521140:CDS | 40.0% |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3_4:73790024-73790043 | Msa0521140:CDS | 40.0% | |
| !! | ATTGAACACTGGCTTTGCTA+AGG | + | chr3_4:73790091-73790110 | None:intergenic | 40.0% |
| ! | ACTTCGAAGGTGTAGTTTAC+CGG | + | chr3_4:73789321-73789340 | None:intergenic | 40.0% |
| ACTCATAGCTTGAACTTCGA+AGG | + | chr3_4:73789334-73789353 | None:intergenic | 40.0% | |
| ! | TGATTGGAGTGTCTATCATG+CGG | + | chr3_4:73789453-73789472 | None:intergenic | 40.0% |
| CTTGTTCAAGGAATCATCGA+AGG | - | chr3_4:73789483-73789502 | Msa0521140:CDS | 40.0% | |
| TGTTCAAGGAATCATCGAAG+GGG | - | chr3_4:73789485-73789504 | Msa0521140:CDS | 40.0% | |
| CAATGCGAATGTTAAGCAAC+TGG | - | chr3_4:73789629-73789648 | Msa0521140:CDS | 40.0% | |
| !! | ATTGGTTCGAAATTGAGGCA+AGG | - | chr3_4:73789759-73789778 | Msa0521140:CDS | 40.0% |
| ACAAGGAGGGAATTAAAGTG+AGG | - | chr3_4:73789856-73789875 | Msa0521140:CDS | 40.0% | |
| TAAAGTGAGGACTGAAGTGA+AGG | - | chr3_4:73789869-73789888 | Msa0521140:CDS | 40.0% | |
| !! | GGTTTTTGAGAATCAGAGAG+AGG | - | chr3_4:73789890-73789909 | Msa0521140:CDS | 40.0% |
| ! | TTCTGAGTTGGCTAAGAAGA+AGG | - | chr3_4:73789932-73789951 | Msa0521140:CDS | 40.0% |
| AGTTACAAGGTGAAGTTGAG+AGG | - | chr3_4:73790024-73790043 | Msa0521140:CDS | 40.0% | |
| !! | ATTGAACACTGGCTTTGCTA+AGG | + | chr3_4:73790091-73790110 | None:intergenic | 40.0% |
| GGGACTTTATCGTGTAGCAA+AGG | - | chr3_4:73789191-73789210 | Msa0521140:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3_4:73789382-73789401 | None:intergenic | 45.0% | |
| TGCGAATGTTAAGCAACTGG+TGG | - | chr3_4:73789632-73789651 | Msa0521140:CDS | 45.0% | |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3_4:73789683-73789702 | Msa0521140:CDS | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3_4:73789732-73789751 | Msa0521140:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | - | chr3_4:73789825-73789844 | Msa0521140:CDS | 45.0% |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3_4:73790011-73790030 | Msa0521140:CDS | 45.0% | |
| GGGACTTTATCGTGTAGCAA+AGG | - | chr3_4:73789191-73789210 | Msa0521140:CDS | 45.0% | |
| AGGACCAATTGTGAAGACAG+CGG | + | chr3_4:73789382-73789401 | None:intergenic | 45.0% | |
| TGCGAATGTTAAGCAACTGG+TGG | - | chr3_4:73789632-73789651 | Msa0521140:CDS | 45.0% | |
| ! | TTTGGGACAAAAGACGCAGA+TGG | - | chr3_4:73789683-73789702 | Msa0521140:CDS | 45.0% |
| GTGGCAGAAGCTAAGATGAA+AGG | - | chr3_4:73789732-73789751 | Msa0521140:CDS | 45.0% | |
| ! | GTTATTTCGCTGCAGAGAAC+TGG | - | chr3_4:73789825-73789844 | Msa0521140:CDS | 45.0% |
| CTAAGGGATGCTGAGTTACA+AGG | - | chr3_4:73790011-73790030 | Msa0521140:CDS | 45.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr3_4:73789314-73789333 | None:intergenic | 50.0% | |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3_4:73789369-73789388 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3_4:73789380-73789399 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3_4:73789381-73789400 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3_4:73789402-73789421 | None:intergenic | 50.0% | |
| ! | ACTTGCTGCTTCCATGACGA+TGG | - | chr3_4:73789518-73789537 | Msa0521140:CDS | 50.0% |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3_4:73789532-73789551 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3_4:73789534-73789553 | Msa0521140:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3_4:73789703-73789722 | Msa0521140:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3_4:73789704-73789723 | Msa0521140:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3_4:73789713-73789732 | Msa0521140:CDS | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | - | chr3_4:73789899-73789918 | Msa0521140:CDS | 50.0% | |
| TGGCTAAGAAGAAGGCAGCT+TGG | - | chr3_4:73789940-73789959 | Msa0521140:CDS | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | - | chr3_4:73789947-73789966 | Msa0521140:CDS | 50.0% | |
| AGGTGTAGTTTACCGGTGAG+AGG | + | chr3_4:73789314-73789333 | None:intergenic | 50.0% | |
| AAGACAGCGGGGAGAACAAA+AGG | + | chr3_4:73789369-73789388 | None:intergenic | 50.0% | |
| GACCAATTGTGAAGACAGCG+GGG | + | chr3_4:73789380-73789399 | None:intergenic | 50.0% | |
| GGACCAATTGTGAAGACAGC+GGG | + | chr3_4:73789381-73789400 | None:intergenic | 50.0% | |
| CTTTCCTGATCGTCAACACG+AGG | + | chr3_4:73789402-73789421 | None:intergenic | 50.0% | |
| ! | ACTTGCTGCTTCCATGACGA+TGG | - | chr3_4:73789518-73789537 | Msa0521140:CDS | 50.0% |
| GAAAACCTCCTCCATCGTCA+TGG | + | chr3_4:73789532-73789551 | None:intergenic | 50.0% | |
| ! | ACGATGGAGGAGGTTTTCAG+AGG | - | chr3_4:73789534-73789553 | Msa0521140:CDS | 50.0% |
| TGGAAGCAGCGAATCAAGCT+AGG | - | chr3_4:73789703-73789722 | Msa0521140:CDS | 50.0% | |
| GGAAGCAGCGAATCAAGCTA+GGG | - | chr3_4:73789704-73789723 | Msa0521140:CDS | 50.0% | |
| GAATCAAGCTAGGGTTGACG+TGG | - | chr3_4:73789713-73789732 | Msa0521140:CDS | 50.0% | |
| GAATCAGAGAGAGGCTGAAG+TGG | - | chr3_4:73789899-73789918 | Msa0521140:CDS | 50.0% | |
| TGGCTAAGAAGAAGGCAGCT+TGG | - | chr3_4:73789940-73789959 | Msa0521140:CDS | 50.0% | |
| GAAGAAGGCAGCTTGGACTA+AGG | - | chr3_4:73789947-73789966 | Msa0521140:CDS | 50.0% | |
| AAGACGGAGCAGGATTGACC+GGG | + | chr3_4:73789288-73789307 | None:intergenic | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | + | chr3_4:73789289-73789308 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3_4:73789304-73789323 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3_4:73789375-73789394 | Msa0521140:CDS | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3_4:73789395-73789414 | Msa0521140:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr3_4:73789521-73789540 | Msa0521140:CDS | 55.0% |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3_4:73789524-73789543 | Msa0521140:CDS | 55.0% | |
| ! | AAGCAACTGGTGGATGTGCC+TGG | - | chr3_4:73789642-73789661 | Msa0521140:CDS | 55.0% |
| TTCGCTGCAGAGAACTGGAG+AGG | - | chr3_4:73789830-73789849 | Msa0521140:CDS | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | - | chr3_4:73789831-73789850 | Msa0521140:CDS | 55.0% | |
| GAGAACTGGAGAGGGTGACA+AGG | - | chr3_4:73789839-73789858 | Msa0521140:CDS | 55.0% | |
| AACTGGAGAGGGTGACAAGG+AGG | - | chr3_4:73789842-73789861 | Msa0521140:CDS | 55.0% | |
| ACTGGAGAGGGTGACAAGGA+GGG | - | chr3_4:73789843-73789862 | Msa0521140:CDS | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | - | chr3_4:73789902-73789921 | Msa0521140:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+TGG | - | chr3_4:73789920-73789939 | Msa0521140:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | - | chr3_4:73789950-73789969 | Msa0521140:CDS | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | - | chr3_4:73789980-73789999 | Msa0521140:CDS | 55.0% | |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3_4:73789995-73790014 | Msa0521140:CDS | 55.0% |
| CTCAGCATCCCTTAGAGCCA+CGG | + | chr3_4:73790006-73790025 | None:intergenic | 55.0% | |
| AAGACGGAGCAGGATTGACC+GGG | + | chr3_4:73789288-73789307 | None:intergenic | 55.0% | |
| CAAGACGGAGCAGGATTGAC+CGG | + | chr3_4:73789289-73789308 | None:intergenic | 55.0% | |
| TACCGGTGAGAGGTCCAAGA+CGG | + | chr3_4:73789304-73789323 | None:intergenic | 55.0% | |
| CTCCCCGCTGTCTTCACAAT+TGG | - | chr3_4:73789375-73789394 | Msa0521140:CDS | 55.0% | |
| ! | TGGTCCTCGTGTTGACGATC+AGG | - | chr3_4:73789395-73789414 | Msa0521140:CDS | 55.0% |
| ! | TGCTGCTTCCATGACGATGG+AGG | - | chr3_4:73789521-73789540 | Msa0521140:CDS | 55.0% |
| TGCTTCCATGACGATGGAGG+AGG | - | chr3_4:73789524-73789543 | Msa0521140:CDS | 55.0% | |
| ! | AAGCAACTGGTGGATGTGCC+TGG | - | chr3_4:73789642-73789661 | Msa0521140:CDS | 55.0% |
| TTCGCTGCAGAGAACTGGAG+AGG | - | chr3_4:73789830-73789849 | Msa0521140:CDS | 55.0% | |
| TCGCTGCAGAGAACTGGAGA+GGG | - | chr3_4:73789831-73789850 | Msa0521140:CDS | 55.0% | |
| GAGAACTGGAGAGGGTGACA+AGG | - | chr3_4:73789839-73789858 | Msa0521140:CDS | 55.0% | |
| AACTGGAGAGGGTGACAAGG+AGG | - | chr3_4:73789842-73789861 | Msa0521140:CDS | 55.0% | |
| ACTGGAGAGGGTGACAAGGA+GGG | - | chr3_4:73789843-73789862 | Msa0521140:CDS | 55.0% | |
| TCAGAGAGAGGCTGAAGTGG+CGG | - | chr3_4:73789902-73789921 | Msa0521140:CDS | 55.0% | |
| GGCGGAGGCTAATTCTGAGT+TGG | - | chr3_4:73789920-73789939 | Msa0521140:CDS | 55.0% | |
| GAAGGCAGCTTGGACTAAGG+CGG | - | chr3_4:73789950-73789969 | Msa0521140:CDS | 55.0% | |
| GGCTGAAGTAGAGGCGAAGA+AGG | - | chr3_4:73789980-73789999 | Msa0521140:CDS | 55.0% | |
| !! | GAAGAAGGCCGTGGCTCTAA+GGG | - | chr3_4:73789995-73790014 | Msa0521140:CDS | 55.0% |
| CTCAGCATCCCTTAGAGCCA+CGG | + | chr3_4:73790006-73790025 | None:intergenic | 55.0% | |
| CGGTCAATCCTGCTCCGTCT+TGG | - | chr3_4:73789287-73789306 | Msa0521140:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | + | chr3_4:73789298-73789317 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | - | chr3_4:73789299-73789318 | Msa0521140:CDS | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | - | chr3_4:73789956-73789975 | Msa0521140:CDS | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3_4:73789959-73789978 | Msa0521140:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | - | chr3_4:73789971-73789990 | Msa0521140:CDS | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | - | chr3_4:73789986-73790005 | Msa0521140:CDS | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3_4:73789994-73790013 | Msa0521140:CDS | 60.0% |
| CGGTCAATCCTGCTCCGTCT+TGG | - | chr3_4:73789287-73789306 | Msa0521140:CDS | 60.0% | |
| TGAGAGGTCCAAGACGGAGC+AGG | + | chr3_4:73789298-73789317 | None:intergenic | 60.0% | |
| CTCCGTCTTGGACCTCTCAC+CGG | - | chr3_4:73789299-73789318 | Msa0521140:CDS | 60.0% | |
| AGCTTGGACTAAGGCGGCTC+AGG | - | chr3_4:73789956-73789975 | Msa0521140:CDS | 60.0% | |
| TTGGACTAAGGCGGCTCAGG+TGG | - | chr3_4:73789959-73789978 | Msa0521140:CDS | 60.0% | |
| GGCTCAGGTGGCTGAAGTAG+AGG | - | chr3_4:73789971-73789990 | Msa0521140:CDS | 60.0% | |
| AGTAGAGGCGAAGAAGGCCG+TGG | - | chr3_4:73789986-73790005 | Msa0521140:CDS | 60.0% | |
| ! | CGAAGAAGGCCGTGGCTCTA+AGG | - | chr3_4:73789994-73790013 | Msa0521140:CDS | 60.0% |
| GAGAGAGGCTGAAGTGGCGG+AGG | - | chr3_4:73789905-73789924 | Msa0521140:CDS | 65.0% | |
| GAGAGAGGCTGAAGTGGCGG+AGG | - | chr3_4:73789905-73789924 | Msa0521140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 73789189 | 73790175 | 73789189 | ID=Msa0521140;Name=Msa0521140 |
| chr3_4 | mRNA | 73789189 | 73790175 | 73789189 | ID=Msa0521140-mRNA-1;Parent=Msa0521140;Name=Msa0521140-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|328 |
| chr3_4 | exon | 73789189 | 73790175 | 73789189 | ID=Msa0521140-mRNA-1:exon:20843;Parent=Msa0521140-mRNA-1 |
| chr3_4 | CDS | 73789189 | 73790175 | 73789189 | ID=Msa0521140-mRNA-1:cds;Parent=Msa0521140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
