Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709660 | XP_013462149.1 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709660 | sp|Q9FWS6|BBD1_ARATH | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 8.30e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709660 | B7FJ72 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0709660 | 0.849260 | 3.623801e-60 | -8.615850e-47 |
| Msa0035400 | Msa0709660 | 0.813587 | 2.374145e-51 | -8.615850e-47 |
| Msa0044180 | Msa0709660 | 0.805153 | 1.531375e-49 | -8.615850e-47 |
| Msa0064550 | Msa0709660 | 0.869661 | 2.618750e-66 | -8.615850e-47 |
| Msa0092960 | Msa0709660 | 0.850619 | 1.510701e-60 | -8.615850e-47 |
| Msa0104360 | Msa0709660 | 0.811137 | 8.136669e-51 | -8.615850e-47 |
| Msa0108070 | Msa0709660 | 0.834237 | 3.366379e-56 | -8.615850e-47 |
| Msa0109490 | Msa0709660 | 0.879762 | 9.564589e-70 | -8.615850e-47 |
| Msa0604880 | Msa0709660 | 0.819200 | 1.316160e-52 | -8.615850e-47 |
| Msa0605250 | Msa0709660 | 0.819977 | 8.749432e-53 | -8.615850e-47 |
| Msa0627050 | Msa0709660 | 0.828818 | 7.277464e-55 | -8.615850e-47 |
| Msa0629440 | Msa0709660 | -0.804283 | 2.327013e-49 | -8.615850e-47 |
| Msa0646190 | Msa0709660 | 0.800378 | 1.482392e-48 | -8.615850e-47 |
| Msa0649310 | Msa0709660 | 0.814876 | 1.232091e-51 | -8.615850e-47 |
| Msa0651400 | Msa0709660 | 0.817578 | 3.065814e-52 | -8.615850e-47 |
| Msa0662120 | Msa0709660 | 0.807985 | 3.867969e-50 | -8.615850e-47 |
| Msa0667070 | Msa0709660 | -0.801113 | 1.049507e-48 | -8.615850e-47 |
| Msa0675010 | Msa0709660 | 0.836071 | 1.159771e-56 | -8.615850e-47 |
| Msa0688800 | Msa0709660 | 0.819982 | 8.723604e-53 | -8.615850e-47 |
| Msa0693400 | Msa0709660 | 0.824361 | 8.413777e-54 | -8.615850e-47 |
| Msa0709660 | Msa0740210 | 0.826280 | 2.957922e-54 | -8.615850e-47 |
| Msa0709660 | Msa0749150 | 0.844558 | 7.017990e-59 | -8.615850e-47 |
| Msa0709660 | Msa0772500 | 0.802449 | 5.580516e-49 | -8.615850e-47 |
| Msa0709660 | Msa0775580 | 0.814449 | 1.531861e-51 | -8.615850e-47 |
| Msa0709660 | Msa0781390 | 0.833219 | 6.048727e-56 | -8.615850e-47 |
| Msa0709660 | Msa0788360 | 0.820060 | 8.374535e-53 | -8.615850e-47 |
| Msa0709660 | Msa0792880 | 0.852699 | 3.889327e-61 | -8.615850e-47 |
| Msa0709660 | Msa0798460 | 0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0709660 | Msa0801360 | 0.811050 | 8.500075e-51 | -8.615850e-47 |
| Msa0709660 | Msa0820520 | 0.818566 | 1.833432e-52 | -8.615850e-47 |
| Msa0709660 | Msa0826650 | 0.813841 | 2.086750e-51 | -8.615850e-47 |
| Msa0709660 | Msa0828570 | 0.810385 | 1.183433e-50 | -8.615850e-47 |
| Msa0709660 | Msa0828900 | 0.850854 | 1.297237e-60 | -8.615850e-47 |
| Msa0709660 | Msa0829060 | 0.815117 | 1.089280e-51 | -8.615850e-47 |
| Msa0709660 | Msa0839830 | 0.808907 | 2.458503e-50 | -8.615850e-47 |
| Msa0709660 | Msa0853500 | 0.802043 | 6.764764e-49 | -8.615850e-47 |
| Msa0709660 | Msa0860920 | 0.844213 | 8.687972e-59 | -8.615850e-47 |
| Msa0709660 | Msa0864690 | 0.814297 | 1.655259e-51 | -8.615850e-47 |
| Msa0709660 | Msa0899700 | 0.806553 | 7.779636e-50 | -8.615850e-47 |
| Msa0709660 | Msa0903490 | 0.815418 | 9.339818e-52 | -8.615850e-47 |
| Msa0709660 | Msa0935970 | 0.819839 | 9.407674e-53 | -8.615850e-47 |
| Msa0709660 | Msa0938420 | 0.817809 | 2.720032e-52 | -8.615850e-47 |
| Msa0709660 | Msa0964680 | 0.814387 | 1.581292e-51 | -8.615850e-47 |
| Msa0709660 | Msa0968780 | 0.818629 | 1.773750e-52 | -8.615850e-47 |
| Msa0709660 | Msa0979250 | 0.800076 | 1.707734e-48 | -8.615850e-47 |
| Msa0709660 | Msa0984000 | 0.862047 | 6.682024e-64 | -8.615850e-47 |
| Msa0709660 | Msa1041080 | 0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0709660 | Msa1108540 | -0.804709 | 1.896869e-49 | -8.615850e-47 |
| Msa0709660 | Msa1137940 | 0.812824 | 3.490153e-51 | -8.615850e-47 |
| Msa0709660 | Msa1141250 | -0.807134 | 5.861975e-50 | -8.615850e-47 |
| Msa0709660 | Msa1144730 | 0.813516 | 2.460217e-51 | -8.615850e-47 |
| Msa0709660 | Msa1152290 | -0.802789 | 4.748241e-49 | -8.615850e-47 |
| Msa0709660 | Msa1173380 | 0.825452 | 4.650605e-54 | -8.615850e-47 |
| Msa0709660 | Msa1180050 | 0.845682 | 3.488483e-59 | -8.615850e-47 |
| Msa0709660 | Msa1182800 | 0.821567 | 3.769905e-53 | -8.615850e-47 |
| Msa0709660 | Msa1182830 | 0.817301 | 3.539842e-52 | -8.615850e-47 |
| Msa0709660 | Msa1198720 | 0.809020 | 2.326054e-50 | -8.615850e-47 |
| Msa0709660 | Msa1232270 | 0.852408 | 4.708293e-61 | -8.615850e-47 |
| Msa0709660 | Msa1241820 | 0.808585 | 2.880896e-50 | -8.615850e-47 |
| Msa0709660 | Msa1252070 | 0.815442 | 9.223846e-52 | -8.615850e-47 |
| Msa0709660 | Msa1252300 | 0.847715 | 9.701953e-60 | -8.615850e-47 |
| Msa0709660 | Msa1270770 | 0.839751 | 1.313976e-57 | -8.615850e-47 |
| Msa0709660 | Msa1313050 | 0.856072 | 4.119417e-62 | -8.615850e-47 |
| Msa0709660 | Msa1326400 | 0.807322 | 5.347862e-50 | -8.615850e-47 |
| Msa0709660 | Msa1349810 | 0.814489 | 1.500983e-51 | -8.615850e-47 |
| Msa0709660 | Msa1354090 | 0.848164 | 7.298564e-60 | -8.615850e-47 |
| Msa0709660 | Msa1358340 | 0.810765 | 9.793953e-51 | -8.615850e-47 |
| Msa0709660 | Msa1394900 | 0.818757 | 1.659670e-52 | -8.615850e-47 |
| Msa0709660 | Msa1434660 | 0.836978 | 6.813823e-57 | -8.615850e-47 |
| Msa0709660 | Msa1463560 | -0.808333 | 3.260456e-50 | -8.615850e-47 |
| Msa0146680 | Msa0709660 | 0.813500 | 2.480968e-51 | -8.615850e-47 |
| Msa0154240 | Msa0709660 | 0.830414 | 2.976228e-55 | -8.615850e-47 |
| Msa0154270 | Msa0709660 | 0.876322 | 1.530970e-68 | -8.615850e-47 |
| Msa0155610 | Msa0709660 | 0.820925 | 5.301637e-53 | -8.615850e-47 |
| Msa0178350 | Msa0709660 | 0.812828 | 3.482590e-51 | -8.615850e-47 |
| Msa0183560 | Msa0709660 | 0.802865 | 4.579478e-49 | -8.615850e-47 |
| Msa0198440 | Msa0709660 | 0.834325 | 3.199980e-56 | -8.615850e-47 |
| Msa0225880 | Msa0709660 | 0.800358 | 1.495993e-48 | -8.615850e-47 |
| Msa0226620 | Msa0709660 | -0.801020 | 1.096578e-48 | -8.615850e-47 |
| Msa0377280 | Msa0709660 | 0.816508 | 5.332726e-52 | -8.615850e-47 |
| Msa0379340 | Msa0709660 | -0.805423 | 1.344763e-49 | -8.615850e-47 |
| Msa0380650 | Msa0709660 | 0.802301 | 5.988057e-49 | -8.615850e-47 |
| Msa0384530 | Msa0709660 | 0.922385 | 1.053760e-88 | -8.615850e-47 |
| Msa0387970 | Msa0709660 | 0.800072 | 1.710698e-48 | -8.615850e-47 |
| Msa0392050 | Msa0709660 | 0.813005 | 3.185860e-51 | -8.615850e-47 |
| Msa0401340 | Msa0709660 | 0.804454 | 2.143271e-49 | -8.615850e-47 |
| Msa0404690 | Msa0709660 | 0.821010 | 5.068170e-53 | -8.615850e-47 |
| Msa0412190 | Msa0709660 | 0.818005 | 2.456662e-52 | -8.615850e-47 |
| Msa0428850 | Msa0709660 | -0.813550 | 2.418477e-51 | -8.615850e-47 |
| Msa0430290 | Msa0709660 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0435010 | Msa0709660 | 0.982331 | 8.100941e-155 | -8.615850e-47 |
| Msa0448120 | Msa0709660 | 0.814852 | 1.247165e-51 | -8.615850e-47 |
| Msa0462590 | Msa0709660 | 0.804812 | 1.804972e-49 | -8.615850e-47 |
| Msa0469950 | Msa0709660 | 0.812555 | 3.996678e-51 | -8.615850e-47 |
| Msa0476780 | Msa0709660 | 0.808533 | 2.955955e-50 | -8.615850e-47 |
| Msa0479030 | Msa0709660 | 0.964577 | 1.677450e-123 | -8.615850e-47 |
| Msa0479100 | Msa0709660 | 0.977764 | 1.943886e-144 | -8.615850e-47 |
| Msa0479950 | Msa0709660 | 0.896810 | 2.579258e-76 | -8.615850e-47 |
| Msa0245870 | Msa0709660 | 0.815865 | 7.425453e-52 | -8.615850e-47 |
| Msa0260470 | Msa0709660 | 0.810044 | 1.401959e-50 | -8.615850e-47 |
| Msa0278670 | Msa0709660 | 0.831368 | 1.737257e-55 | -8.615850e-47 |
| Msa0304110 | Msa0709660 | 0.810108 | 1.357993e-50 | -8.615850e-47 |
| Msa0318070 | Msa0709660 | 0.830870 | 2.301768e-55 | -8.615850e-47 |
| Msa0341190 | Msa0709660 | 0.808546 | 2.936731e-50 | -8.615850e-47 |
| Msa0344680 | Msa0709660 | 0.815646 | 8.309360e-52 | -8.615850e-47 |
| Msa0358290 | Msa0709660 | 0.803991 | 2.676363e-49 | -8.615850e-47 |
| Msa0521140 | Msa0709660 | 0.826784 | 2.243075e-54 | -8.615850e-47 |
| Msa0530340 | Msa0709660 | 0.817322 | 3.501120e-52 | -8.615850e-47 |
| Msa0549540 | Msa0709660 | 0.832928 | 7.145268e-56 | -8.615850e-47 |
| Msa0556070 | Msa0709660 | 0.825649 | 4.176942e-54 | -8.615850e-47 |
| Msa0600820 | Msa0709660 | 0.804498 | 2.099139e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709660 | MtrunA17_Chr3g0141831 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Msa0709660 | MtrunA17_Chr1g0155531 | 69.903 | 309 | 81 | 2 | 4 | 303 | 1 | 306 | 1.69e-158 | 447 |
| Msa0709660 | MtrunA17_Chr5g0406211 | 36.000 | 175 | 105 | 4 | 131 | 303 | 141 | 310 | 1.86e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0709660 | AT1G75380.3 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 8.43e-153 | 433 |
| Msa0709660 | AT1G75380.1 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 8.43e-153 | 433 |
| Msa0709660 | AT1G75380.4 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 8.43e-153 | 433 |
| Msa0709660 | AT1G75380.2 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 8.43e-153 | 433 |
| Msa0709660 | AT1G19660.3 | 69.625 | 293 | 87 | 2 | 29 | 320 | 36 | 327 | 4.24e-150 | 426 |
| Msa0709660 | AT1G19660.2 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.51e-149 | 425 |
| Msa0709660 | AT1G19660.1 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.51e-149 | 425 |
| Msa0709660 | AT5G66050.2 | 36.364 | 176 | 104 | 4 | 130 | 303 | 49 | 218 | 3.13e-22 | 94.7 |
| Msa0709660 | AT5G66050.3 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 6.45e-22 | 95.1 |
| Msa0709660 | AT5G66050.1 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 6.46e-22 | 95.5 |
| Msa0709660 | AT5G66050.4 | 35.294 | 170 | 102 | 4 | 130 | 297 | 143 | 306 | 3.48e-19 | 87.4 |
Find 97 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 5_1:+835649 | Msa0709660:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 5_1:+835003 | Msa0709660:CDS |
| AAAAGACATACAAACGATTA+TGG | 0.245394 | 5_1:-834020 | None:intergenic |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 5_1:-832870 | None:intergenic |
| ATTTAATTTAATTTAACTAT+TGG | 0.308594 | 5_1:-832601 | None:intergenic |
| ACTCCAACTCAACCTTCTTC+TGG | 0.311094 | 5_1:+835767 | Msa0709660:three_prime_UTR |
| CTTACCTGTGTGTTTACTCT+TGG | 0.326629 | 5_1:+835436 | Msa0709660:CDS |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 5_1:+832734 | Msa0709660:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 5_1:-835094 | None:intergenic |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 5_1:-833974 | None:intergenic |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 5_1:+835650 | Msa0709660:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 5_1:-833928 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 5_1:+833937 | Msa0709660:CDS |
| TTCAAATGGTAGTGGAAGTA+TGG | 0.371169 | 5_1:+832941 | Msa0709660:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 5_1:+835090 | Msa0709660:CDS |
| ACCTGTGTGTTTACTCTTGG+AGG | 0.375683 | 5_1:+835439 | Msa0709660:CDS |
| GAGGTGAAGAGTGGAGGAGA+TGG | 0.376747 | 5_1:+833863 | Msa0709660:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 5_1:-832878 | None:intergenic |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 5_1:+832725 | Msa0709660:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 5_1:+835673 | Msa0709660:CDS |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 5_1:-835314 | None:intergenic |
| AAAGACATACAAACGATTAT+GGG | 0.408082 | 5_1:-834019 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 5_1:-835001 | None:intergenic |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 5_1:+834548 | Msa0709660:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 5_1:-832795 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 5_1:+834189 | Msa0709660:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 5_1:-832807 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 5_1:+835037 | Msa0709660:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 5_1:-835653 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 5_1:-835093 | None:intergenic |
| TTCTTGTTTGTGTAATGTAA+AGG | 0.455596 | 5_1:-832476 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 5_1:-833956 | None:intergenic |
| AGGTGAAGAGTGGAGGAGAT+GGG | 0.465253 | 5_1:+833864 | Msa0709660:CDS |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 5_1:+835299 | Msa0709660:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 5_1:+834386 | Msa0709660:CDS |
| AACTCATCTTCAAATGGTAG+TGG | 0.476288 | 5_1:+832933 | Msa0709660:CDS |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 5_1:-832582 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 5_1:-832877 | None:intergenic |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 5_1:-832887 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 5_1:+832999 | Msa0709660:CDS |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 5_1:-832544 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 5_1:+833854 | Msa0709660:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 5_1:+833986 | Msa0709660:CDS |
| AGACCAGAAGAAGGTTGAGT+TGG | 0.494507 | 5_1:-835770 | None:intergenic |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 5_1:+832747 | Msa0709660:CDS |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 5_1:+835070 | Msa0709660:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 5_1:+835016 | Msa0709660:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 5_1:+834195 | Msa0709660:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 5_1:+833923 | Msa0709660:CDS |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 5_1:-835079 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 5_1:-835339 | None:intergenic |
| AAAGAAAAGAGACCAGAAGA+AGG | 0.530876 | 5_1:-835779 | None:intergenic |
| AGTTTCAACTCATCTTCAAA+TGG | 0.531934 | 5_1:+832927 | Msa0709660:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 5_1:-835394 | None:intergenic |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 5_1:-835326 | None:intergenic |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 5_1:+832783 | Msa0709660:CDS |
| TTTACATTACACAAACAAGA+AGG | 0.551341 | 5_1:+832478 | Msa0709660:five_prime_UTR |
| ATGGGTTCATAGTCAAAATG+AGG | 0.552865 | 5_1:+833882 | Msa0709660:CDS |
| AAATTAAATTAAAACGAGAT+CGG | 0.553672 | 5_1:+832620 | Msa0709660:five_prime_UTR |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 5_1:+834581 | Msa0709660:CDS |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 5_1:+833973 | Msa0709660:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 5_1:-834750 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 5_1:-833968 | None:intergenic |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 5_1:+834387 | Msa0709660:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 5_1:+832637 | Msa0709660:five_prime_UTR |
| AAATGAAGAGAAGAAAGAAG+AGG | 0.566491 | 5_1:-832511 | None:intergenic |
| CAAGAGTAAACACACAGGTA+AGG | 0.578430 | 5_1:-835435 | None:intergenic |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 5_1:+835061 | Msa0709660:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 5_1:+832821 | Msa0709660:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 5_1:-834366 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 5_1:+832820 | Msa0709660:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 5_1:+834368 | Msa0709660:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 5_1:+835095 | Msa0709660:CDS |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 5_1:+834742 | Msa0709660:CDS |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 5_1:+835628 | Msa0709660:intron |
| TTCATAGTCAAAATGAGGGA+TGG | 0.606214 | 5_1:+833887 | Msa0709660:CDS |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 5_1:-833937 | None:intergenic |
| AAGACATACAAACGATTATG+GGG | 0.611378 | 5_1:-834018 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 5_1:+834551 | Msa0709660:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 5_1:-834193 | None:intergenic |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 5_1:+833857 | Msa0709660:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 5_1:-834721 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 5_1:+833980 | Msa0709660:CDS |
| TGGGTTCATAGTCAAAATGA+GGG | 0.648695 | 5_1:+833883 | Msa0709660:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 5_1:+835625 | Msa0709660:intron |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 5_1:+835322 | Msa0709660:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 5_1:+835383 | Msa0709660:CDS |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 5_1:+832798 | Msa0709660:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 5_1:+835629 | Msa0709660:intron |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 5_1:-835077 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 5_1:-834728 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 5_1:+832822 | Msa0709660:CDS |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 5_1:-835078 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 5_1:+833976 | Msa0709660:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 5_1:-833938 | None:intergenic |
| ACCTCCAAGAGTAAACACAC+AGG | 0.724337 | 5_1:-835440 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 5_1:+833926 | Msa0709660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAATAATT+GGG | - | chr5_1:833379-833398 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAATAAT+TGG | - | chr5_1:833380-833399 | None:intergenic | 0.0% |
| !! | TCATAAAAATTGAATTAATT+AGG | - | chr5_1:832676-832695 | None:intergenic | 10.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | + | chr5_1:832697-832716 | Msa0709660:intron | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | - | chr5_1:833169-833188 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | - | chr5_1:833170-833189 | None:intergenic | 10.0% |
| !! | AAATTAAATTAAAACGAGAT+CGG | + | chr5_1:832620-832639 | Msa0709660:five_prime_UTR | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | + | chr5_1:832707-832726 | Msa0709660:intron | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | + | chr5_1:833057-833076 | Msa0709660:intron | 15.0% |
| !!! | ACAGTTACTTTAAAAAAAAA+TGG | - | chr5_1:833744-833763 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | - | chr5_1:832547-832566 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | - | chr5_1:832585-832604 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | - | chr5_1:833527-833546 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | + | chr5_1:833562-833581 | Msa0709660:intron | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | - | chr5_1:833797-833816 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | + | chr5_1:833799-833818 | Msa0709660:intron | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | + | chr5_1:834088-834107 | Msa0709660:intron | 20.0% |
| !!! | TCCTATCCTATATATTATTT+TGG | + | chr5_1:834112-834131 | Msa0709660:intron | 20.0% |
| !! | ACCAAAATAATATATAGGAT+AGG | - | chr5_1:834116-834135 | None:intergenic | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | - | chr5_1:834121-834140 | None:intergenic | 20.0% |
| !! | ACTACAATACAATTAAGATT+AGG | - | chr5_1:834455-834474 | None:intergenic | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | + | chr5_1:834959-834978 | Msa0709660:intron | 20.0% |
| !! | TTCTTGTTTGTGTAATGTAA+AGG | - | chr5_1:832479-832498 | None:intergenic | 25.0% |
| ! | TTTACATTACACAAACAAGA+AGG | + | chr5_1:832478-832497 | Msa0709660:five_prime_UTR | 25.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | + | chr5_1:832821-832840 | Msa0709660:CDS | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | + | chr5_1:833035-833054 | Msa0709660:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | + | chr5_1:833435-833454 | Msa0709660:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | - | chr5_1:833519-833538 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | - | chr5_1:833665-833684 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | - | chr5_1:833725-833744 | None:intergenic | 25.0% |
| !!! | GTGAAAATAAATTTGTTGTG+TGG | + | chr5_1:833825-833844 | Msa0709660:intron | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | - | chr5_1:834022-834041 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | - | chr5_1:834023-834042 | None:intergenic | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | - | chr5_1:834264-834283 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | + | chr5_1:834264-834283 | Msa0709660:intron | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | - | chr5_1:834303-834322 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | - | chr5_1:834369-834388 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | + | chr5_1:834368-834387 | Msa0709660:CDS | 25.0% |
| !!! | GTATTACTTGTTTTTGGTAT+AGG | + | chr5_1:834667-834686 | Msa0709660:intron | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | - | chr5_1:835004-835023 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | + | chr5_1:835003-835022 | Msa0709660:CDS | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | - | chr5_1:835533-835552 | None:intergenic | 25.0% |
| AAATGAAGAGAAGAAAGAAG+AGG | - | chr5_1:832514-832533 | None:intergenic | 30.0% | |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | + | chr5_1:832716-832735 | Msa0709660:intron | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | + | chr5_1:832734-832753 | Msa0709660:intron | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | + | chr5_1:832747-832766 | Msa0709660:CDS | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | + | chr5_1:832820-832839 | Msa0709660:CDS | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | + | chr5_1:832822-832841 | Msa0709660:CDS | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | - | chr5_1:832880-832899 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | - | chr5_1:832881-832900 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | - | chr5_1:832890-832909 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | + | chr5_1:832927-832946 | Msa0709660:CDS | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | + | chr5_1:832999-833018 | Msa0709660:CDS | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | - | chr5_1:833102-833121 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | - | chr5_1:833369-833388 | None:intergenic | 30.0% | |
| !! | ATACTATTGGATTTTAGGTC+AGG | - | chr5_1:833493-833512 | None:intergenic | 30.0% |
| ! | GGTACATACTATTGGATTTT+AGG | - | chr5_1:833498-833517 | None:intergenic | 30.0% |
| ATATAGTTCAAATTCCACCT+GGG | + | chr5_1:833671-833690 | Msa0709660:intron | 30.0% | |
| ! | TTTTATAAGACTAGAAGCCT+TGG | + | chr5_1:833777-833796 | Msa0709660:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | - | chr5_1:834021-834040 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | - | chr5_1:834049-834068 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | - | chr5_1:834050-834069 | None:intergenic | 30.0% | |
| ! | TCTCTTCCAATGTAATTTTG+TGG | + | chr5_1:834145-834164 | Msa0709660:intron | 30.0% |
| GATGAACCACAAAATTACAT+TGG | - | chr5_1:834154-834173 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | + | chr5_1:834165-834184 | Msa0709660:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | - | chr5_1:834292-834311 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | + | chr5_1:834325-834344 | Msa0709660:intron | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | - | chr5_1:834331-834350 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | + | chr5_1:834338-834357 | Msa0709660:intron | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | - | chr5_1:834639-834658 | None:intergenic | 30.0% |
| !! | CTGACAGTATTACTTGTTTT+TGG | + | chr5_1:834661-834680 | Msa0709660:intron | 30.0% |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | + | chr5_1:834671-834690 | Msa0709660:intron | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | - | chr5_1:834896-834915 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | + | chr5_1:834895-834914 | Msa0709660:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | - | chr5_1:834907-834926 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | - | chr5_1:835096-835115 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | + | chr5_1:835095-835114 | Msa0709660:CDS | 30.0% | |
| !!! | GTTTTGGAAGATACATTTCA+AGG | + | chr5_1:835121-835140 | Msa0709660:intron | 30.0% |
| AGTATTCATAATCTCTGTTC+TGG | + | chr5_1:835165-835184 | Msa0709660:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | + | chr5_1:835551-835570 | Msa0709660:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | + | chr5_1:835650-835669 | Msa0709660:CDS | 30.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | + | chr5_1:832725-832744 | Msa0709660:intron | 35.0% | |
| AACTCATCTTCAAATGGTAG+TGG | + | chr5_1:832933-832952 | Msa0709660:CDS | 35.0% | |
| !! | TTCAAATGGTAGTGGAAGTA+TGG | + | chr5_1:832941-832960 | Msa0709660:CDS | 35.0% |
| GGTATAGTGGTACATACTAT+TGG | - | chr5_1:833506-833525 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+TGG | + | chr5_1:833670-833689 | Msa0709660:intron | 35.0% | |
| TATAGTTCAAATTCCACCTG+GGG | + | chr5_1:833672-833691 | Msa0709660:intron | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | + | chr5_1:833844-833863 | Msa0709660:intron | 35.0% |
| ATGGGTTCATAGTCAAAATG+AGG | + | chr5_1:833882-833901 | Msa0709660:CDS | 35.0% | |
| TGGGTTCATAGTCAAAATGA+GGG | + | chr5_1:833883-833902 | Msa0709660:CDS | 35.0% | |
| TTCATAGTCAAAATGAGGGA+TGG | + | chr5_1:833887-833906 | Msa0709660:CDS | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | + | chr5_1:834055-834074 | Msa0709660:intron | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | + | chr5_1:834387-834406 | Msa0709660:CDS | 35.0% | |
| TAGGAATATGCAACAGCAAA+GGG | - | chr5_1:834436-834455 | None:intergenic | 35.0% | |
| TTAGGAATATGCAACAGCAA+AGG | - | chr5_1:834437-834456 | None:intergenic | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | + | chr5_1:834515-834534 | Msa0709660:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | + | chr5_1:834548-834567 | Msa0709660:CDS | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | - | chr5_1:834601-834620 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | - | chr5_1:834634-834653 | None:intergenic | 35.0% |
| GTAATACTGTCAGACAAATC+TGG | - | chr5_1:834654-834673 | None:intergenic | 35.0% | |
| ATGAATTACCTTGCATCTGA+CGG | - | chr5_1:834753-834772 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | - | chr5_1:834845-834864 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | + | chr5_1:834861-834880 | Msa0709660:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | + | chr5_1:834879-834898 | Msa0709660:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | + | chr5_1:835016-835035 | Msa0709660:CDS | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | + | chr5_1:835037-835056 | Msa0709660:CDS | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | - | chr5_1:835097-835116 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | - | chr5_1:835214-835233 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | + | chr5_1:835221-835240 | Msa0709660:intron | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | + | chr5_1:835299-835318 | Msa0709660:intron | 35.0% | |
| GGGACCAACTTAATCAATTT+AGG | + | chr5_1:835649-835668 | Msa0709660:CDS | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | - | chr5_1:835656-835675 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | + | chr5_1:835673-835692 | Msa0709660:CDS | 35.0% | |
| GATCGGTGATTCATCTTACA+AGG | + | chr5_1:832637-832656 | Msa0709660:five_prime_UTR | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | + | chr5_1:832783-832802 | Msa0709660:CDS | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | - | chr5_1:832873-832892 | None:intergenic | 40.0% | |
| ATGCTGCCAAAGTTAGCAAT+CGG | + | chr5_1:833241-833260 | Msa0709660:intron | 40.0% | |
| ! | ATCACACCGATTGCTAACTT+TGG | - | chr5_1:833250-833269 | None:intergenic | 40.0% |
| ATCGAACTAACTGTAGTGTG+TGG | + | chr5_1:833268-833287 | Msa0709660:intron | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | + | chr5_1:833269-833288 | Msa0709660:intron | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | - | chr5_1:833590-833609 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | - | chr5_1:833594-833613 | None:intergenic | 40.0% |
| AAAATCAAGTTATCGCCCAG+GGG | - | chr5_1:833638-833657 | None:intergenic | 40.0% | |
| CAAAATCAAGTTATCGCCCA+GGG | - | chr5_1:833639-833658 | None:intergenic | 40.0% | |
| ACAAAATCAAGTTATCGCCC+AGG | - | chr5_1:833640-833659 | None:intergenic | 40.0% | |
| ATAGTTCAAATTCCACCTGG+GGG | + | chr5_1:833673-833692 | Msa0709660:intron | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+AGG | - | chr5_1:833691-833710 | None:intergenic | 40.0% |
| TTCAACACAATTGCAGGATG+TGG | - | chr5_1:833971-833990 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | + | chr5_1:833973-833992 | Msa0709660:CDS | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | - | chr5_1:833977-833996 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | + | chr5_1:833976-833995 | Msa0709660:CDS | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | + | chr5_1:833980-833999 | Msa0709660:CDS | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | + | chr5_1:834189-834208 | Msa0709660:CDS | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | + | chr5_1:834195-834214 | Msa0709660:CDS | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | + | chr5_1:834386-834405 | Msa0709660:CDS | 40.0% | |
| AGTTACTAAGAGAGTTCAGG+AGG | + | chr5_1:834551-834570 | Msa0709660:CDS | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | + | chr5_1:834581-834600 | Msa0709660:CDS | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | - | chr5_1:834627-834646 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | - | chr5_1:834628-834647 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | - | chr5_1:834629-834648 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | - | chr5_1:834731-834750 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | - | chr5_1:834809-834828 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | + | chr5_1:834848-834867 | Msa0709660:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | - | chr5_1:834859-834878 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | + | chr5_1:835090-835109 | Msa0709660:CDS | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | + | chr5_1:835099-835118 | Msa0709660:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | - | chr5_1:835317-835336 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | + | chr5_1:835322-835341 | Msa0709660:CDS | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | - | chr5_1:835329-835348 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | - | chr5_1:835342-835361 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | - | chr5_1:835397-835416 | None:intergenic | 40.0% | |
| CAAGAGTAAACACACAGGTA+AGG | - | chr5_1:835438-835457 | None:intergenic | 40.0% | |
| CTTACCTGTGTGTTTACTCT+TGG | + | chr5_1:835436-835455 | Msa0709660:CDS | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | - | chr5_1:832798-832817 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | + | chr5_1:832798-832817 | Msa0709660:CDS | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | - | chr5_1:832810-832829 | None:intergenic | 45.0% |
| TCAGCTTAGTGGCGAGAATA+GGG | + | chr5_1:833301-833320 | Msa0709660:intron | 45.0% | |
| ! | TAATTGGGTCTGTACTGGTG+TGG | - | chr5_1:833364-833383 | None:intergenic | 45.0% |
| ATGTGTATGGTGTACTCCAG+TGG | + | chr5_1:833448-833467 | Msa0709660:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | + | chr5_1:833454-833473 | Msa0709660:intron | 45.0% | |
| !! | GATTTTAGGTCAGGTACTCC+GGG | - | chr5_1:833484-833503 | None:intergenic | 45.0% |
| !! | GGATTTTAGGTCAGGTACTC+CGG | - | chr5_1:833485-833504 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | + | chr5_1:833603-833622 | Msa0709660:intron | 45.0% |
| ! | ATTTTACAATAGCCCCCAGG+TGG | - | chr5_1:833688-833707 | None:intergenic | 45.0% |
| TGTGTAGTTGAGGTGAAGAG+TGG | + | chr5_1:833854-833873 | Msa0709660:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | + | chr5_1:833986-834005 | Msa0709660:CDS | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | - | chr5_1:834196-834215 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | - | chr5_1:834626-834645 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | - | chr5_1:834724-834743 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | + | chr5_1:834803-834822 | Msa0709660:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | + | chr5_1:834839-834858 | Msa0709660:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | - | chr5_1:834989-835008 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | - | chr5_1:835081-835100 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | - | chr5_1:835082-835101 | None:intergenic | 45.0% |
| ! | TGAACTGGATCGGTAGGTTT+TGG | + | chr5_1:835105-835124 | Msa0709660:intron | 45.0% |
| ACCTGTGTGTTTACTCTTGG+AGG | + | chr5_1:835439-835458 | Msa0709660:CDS | 45.0% | |
| ACCTCCAAGAGTAAACACAC+AGG | - | chr5_1:835443-835462 | None:intergenic | 45.0% | |
| ACTCCAACTCAACCTTCTTC+TGG | + | chr5_1:835767-835786 | Msa0709660:three_prime_UTR | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | - | chr5_1:835773-835792 | None:intergenic | 45.0% | |
| !!! | ATTTAATTTAATTTAACTAT+TGG | - | chr5_1:832604-832623 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | + | chr5_1:833276-833295 | Msa0709660:intron | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | + | chr5_1:833300-833319 | Msa0709660:intron | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | + | chr5_1:833302-833321 | Msa0709660:intron | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | - | chr5_1:833610-833629 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | + | chr5_1:833608-833627 | Msa0709660:intron | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | + | chr5_1:833857-833876 | Msa0709660:intron | 50.0% | |
| AGGTGAAGAGTGGAGGAGAT+GGG | + | chr5_1:833864-833883 | Msa0709660:CDS | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | - | chr5_1:833959-833978 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | + | chr5_1:834742-834761 | Msa0709660:CDS | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | + | chr5_1:834976-834995 | Msa0709660:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | - | chr5_1:834986-835005 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | + | chr5_1:835061-835080 | Msa0709660:CDS | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | - | chr5_1:835080-835099 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | + | chr5_1:835625-835644 | Msa0709660:intron | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | + | chr5_1:835628-835647 | Msa0709660:intron | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | + | chr5_1:835629-835648 | Msa0709660:intron | 50.0% |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | + | chr5_1:833290-833309 | Msa0709660:intron | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | + | chr5_1:833305-833324 | Msa0709660:intron | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | + | chr5_1:833317-833336 | Msa0709660:intron | 55.0% | |
| TGGCACTTGCCACACCAGTA+CGG | - | chr5_1:833344-833363 | None:intergenic | 55.0% | |
| ATCAAGTTATCGCCCAGGGG+CGG | - | chr5_1:833635-833654 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+TGG | + | chr5_1:833863-833882 | Msa0709660:CDS | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | + | chr5_1:833923-833942 | Msa0709660:CDS | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | + | chr5_1:833926-833945 | Msa0709660:CDS | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | - | chr5_1:833931-833950 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | - | chr5_1:833940-833959 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | + | chr5_1:833937-833956 | Msa0709660:CDS | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | - | chr5_1:833941-833960 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | + | chr5_1:835070-835089 | Msa0709660:CDS | 55.0% | |
| GACCTAGACTAGGCCCGTAC+TGG | + | chr5_1:833327-833346 | Msa0709660:intron | 60.0% | |
| CACCAGTACGGGCCTAGTCT+AGG | - | chr5_1:833332-833351 | None:intergenic | 60.0% | |
| ! | AGACTAGGCCCGTACTGGTG+TGG | + | chr5_1:833332-833351 | Msa0709660:intron | 60.0% |
| GGCACTTGCCACACCAGTAC+GGG | - | chr5_1:833343-833362 | None:intergenic | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | + | chr5_1:833463-833482 | Msa0709660:intron | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | - | chr5_1:834622-834641 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | + | chr5_1:835383-835402 | Msa0709660:CDS | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | - | chr5_1:833467-833486 | None:intergenic | 65.0% | |
| TTATCGCCCAGGGGCGGACC+TGG | - | chr5_1:833629-833648 | None:intergenic | 70.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | + | chr5_1:833619-833638 | Msa0709660:intron | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | + | chr5_1:833620-833639 | Msa0709660:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 832434 | 835793 | 832434 | ID=Msa0709660;Name=Msa0709660 |
| chr5_1 | mRNA | 832434 | 835793 | 832434 | ID=Msa0709660-mRNA-1;Parent=Msa0709660;Name=Msa0709660-mRNA-1;_AED=0.23;_eAED=0.23;_QI=231|0.88|0.9|1|0.77|0.6|10|49|355 |
| chr5_1 | exon | 832434 | 832658 | 832434 | ID=Msa0709660-mRNA-1:exon:394;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 832738 | 833020 | 832738 | ID=Msa0709660-mRNA-1:exon:395;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 833861 | 834031 | 833861 | ID=Msa0709660-mRNA-1:exon:396;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 834185 | 834234 | 834185 | ID=Msa0709660-mRNA-1:exon:397;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 834360 | 834416 | 834360 | ID=Msa0709660-mRNA-1:exon:398;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 834537 | 834602 | 834537 | ID=Msa0709660-mRNA-1:exon:399;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 834689 | 834763 | 834689 | ID=Msa0709660-mRNA-1:exon:400;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 834998 | 835116 | 834998 | ID=Msa0709660-mRNA-1:exon:401;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 835313 | 835460 | 835313 | ID=Msa0709660-mRNA-1:exon:402;Parent=Msa0709660-mRNA-1 |
| chr5_1 | exon | 835640 | 835793 | 835640 | ID=Msa0709660-mRNA-1:exon:403;Parent=Msa0709660-mRNA-1 |
| chr5_1 | five_prime_UTR | 832434 | 832658 | 832434 | ID=Msa0709660-mRNA-1:five_prime_utr;Parent=Msa0709660-mRNA-1 |
| chr5_1 | five_prime_UTR | 832738 | 832743 | 832738 | ID=Msa0709660-mRNA-1:five_prime_utr;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 832744 | 833020 | 832744 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 833861 | 834031 | 833861 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 834185 | 834234 | 834185 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 834360 | 834416 | 834360 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 834537 | 834602 | 834537 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 834689 | 834763 | 834689 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 834998 | 835116 | 834998 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 835313 | 835460 | 835313 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | CDS | 835640 | 835744 | 835640 | ID=Msa0709660-mRNA-1:cds;Parent=Msa0709660-mRNA-1 |
| chr5_1 | three_prime_UTR | 835745 | 835793 | 835745 | ID=Msa0709660-mRNA-1:three_prime_utr;Parent=Msa0709660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
