Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479100 | XP_013462149.1 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479100 | sp|Q9FWS6|BBD1_ARATH | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.28e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479100 | B7FJ72 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0479100 | 0.850078 | 2.142016e-60 | -8.615850e-47 |
| Msa0035400 | Msa0479100 | 0.808573 | 2.898792e-50 | -8.615850e-47 |
| Msa0044180 | Msa0479100 | 0.811544 | 6.640238e-51 | -8.615850e-47 |
| Msa0064550 | Msa0479100 | 0.877189 | 7.668182e-69 | -8.615850e-47 |
| Msa0090860 | Msa0479100 | 0.802876 | 4.556191e-49 | -8.615850e-47 |
| Msa0092960 | Msa0479100 | 0.847822 | 9.069676e-60 | -8.615850e-47 |
| Msa0104360 | Msa0479100 | 0.808287 | 3.335923e-50 | -8.615850e-47 |
| Msa0108070 | Msa0479100 | 0.820095 | 8.218863e-53 | -8.615850e-47 |
| Msa0109490 | Msa0479100 | 0.873634 | 1.262623e-67 | -8.615850e-47 |
| Msa0146680 | Msa0479100 | 0.810699 | 1.012499e-50 | -8.615850e-47 |
| Msa0154220 | Msa0479100 | 0.805804 | 1.118745e-49 | -8.615850e-47 |
| Msa0154240 | Msa0479100 | 0.836803 | 7.555173e-57 | -8.615850e-47 |
| Msa0154270 | Msa0479100 | 0.881785 | 1.798555e-70 | -8.615850e-47 |
| Msa0155610 | Msa0479100 | 0.832494 | 9.157542e-56 | -8.615850e-47 |
| Msa0178350 | Msa0479100 | 0.801983 | 6.961413e-49 | -8.615850e-47 |
| Msa0183560 | Msa0479100 | 0.802662 | 5.044568e-49 | -8.615850e-47 |
| Msa0198440 | Msa0479100 | 0.833920 | 4.040588e-56 | -8.615850e-47 |
| Msa0225880 | Msa0479100 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa0377280 | Msa0479100 | 0.808049 | 3.749047e-50 | -8.615850e-47 |
| Msa0380650 | Msa0479100 | 0.824024 | 1.009984e-53 | -8.615850e-47 |
| Msa0384530 | Msa0479100 | 0.898822 | 3.641183e-77 | -8.615850e-47 |
| Msa0387970 | Msa0479100 | 0.816454 | 5.484771e-52 | -8.615850e-47 |
| Msa0392050 | Msa0479100 | 0.818302 | 2.103809e-52 | -8.615850e-47 |
| Msa0401340 | Msa0479100 | 0.820987 | 5.129452e-53 | -8.615850e-47 |
| Msa0404690 | Msa0479100 | 0.813318 | 2.719437e-51 | -8.615850e-47 |
| Msa0412190 | Msa0479100 | 0.805818 | 1.110829e-49 | -8.615850e-47 |
| Msa0430290 | Msa0479100 | 0.825730 | 3.996602e-54 | -8.615850e-47 |
| Msa0432720 | Msa0479100 | 0.804010 | 2.651769e-49 | -8.615850e-47 |
| Msa0435010 | Msa0479100 | 0.970793 | 3.682987e-132 | -8.615850e-47 |
| Msa0448120 | Msa0479100 | 0.819269 | 1.269338e-52 | -8.615850e-47 |
| Msa0469950 | Msa0479100 | 0.818582 | 1.818588e-52 | -8.615850e-47 |
| Msa0476780 | Msa0479100 | 0.813270 | 2.787300e-51 | -8.615850e-47 |
| Msa0479030 | Msa0479100 | 0.973370 | 2.586531e-136 | -8.615850e-47 |
| Msa0479100 | Msa0479950 | 0.904368 | 1.320128e-79 | -8.615850e-47 |
| Msa0479100 | Msa0521140 | 0.824823 | 6.550124e-54 | -8.615850e-47 |
| Msa0479100 | Msa0525270 | 0.814263 | 1.684227e-51 | -8.615850e-47 |
| Msa0479100 | Msa0525280 | 0.816104 | 6.568987e-52 | -8.615850e-47 |
| Msa0479100 | Msa0530340 | 0.821109 | 4.807431e-53 | -8.615850e-47 |
| Msa0479100 | Msa0530950 | 0.803278 | 3.761942e-49 | -8.615850e-47 |
| Msa0479100 | Msa0548210 | 0.801607 | 8.314384e-49 | -8.615850e-47 |
| Msa0479100 | Msa0549540 | 0.836103 | 1.138419e-56 | -8.615850e-47 |
| Msa0479100 | Msa0556070 | 0.832602 | 8.610145e-56 | -8.615850e-47 |
| Msa0479100 | Msa0593810 | 0.814350 | 1.611409e-51 | -8.615850e-47 |
| Msa0479100 | Msa0600820 | 0.804266 | 2.346009e-49 | -8.615850e-47 |
| Msa0479100 | Msa0604880 | 0.820749 | 5.820297e-53 | -8.615850e-47 |
| Msa0479100 | Msa0605250 | 0.829805 | 4.191841e-55 | -8.615850e-47 |
| Msa0479100 | Msa0622250 | 0.804424 | 2.174758e-49 | -8.615850e-47 |
| Msa0479100 | Msa0627050 | 0.839458 | 1.565548e-57 | -8.615850e-47 |
| Msa0479100 | Msa0629440 | -0.801729 | 7.849098e-49 | -8.615850e-47 |
| Msa0479100 | Msa0646190 | 0.820173 | 7.888218e-53 | -8.615850e-47 |
| Msa0479100 | Msa0649310 | 0.833558 | 4.977870e-56 | -8.615850e-47 |
| Msa0479100 | Msa0651400 | 0.808168 | 3.536703e-50 | -8.615850e-47 |
| Msa0479100 | Msa0662120 | 0.811303 | 7.491290e-51 | -8.615850e-47 |
| Msa0479100 | Msa0667070 | -0.801989 | 6.938702e-49 | -8.615850e-47 |
| Msa0479100 | Msa0675010 | 0.839982 | 1.143985e-57 | -8.615850e-47 |
| Msa0479100 | Msa0688800 | 0.805271 | 1.447110e-49 | -8.615850e-47 |
| Msa0479100 | Msa0693400 | 0.842888 | 1.963675e-58 | -8.615850e-47 |
| Msa0479100 | Msa0709660 | 0.977764 | 1.943886e-144 | -8.615850e-47 |
| Msa0479100 | Msa0740210 | 0.840132 | 1.045549e-57 | -8.615850e-47 |
| Msa0479100 | Msa0749150 | 0.845703 | 3.442131e-59 | -8.615850e-47 |
| Msa0479100 | Msa0772500 | 0.822690 | 2.069990e-53 | -8.615850e-47 |
| Msa0479100 | Msa0775580 | 0.821302 | 4.338972e-53 | -8.615850e-47 |
| Msa0479100 | Msa0781390 | 0.843381 | 1.451153e-58 | -8.615850e-47 |
| Msa0479100 | Msa0788360 | 0.817527 | 3.148314e-52 | -8.615850e-47 |
| Msa0479100 | Msa0792880 | 0.852510 | 4.403181e-61 | -8.615850e-47 |
| Msa0479100 | Msa0798460 | 0.817584 | 3.056976e-52 | -8.615850e-47 |
| Msa0479100 | Msa0801360 | 0.806706 | 7.219940e-50 | -8.615850e-47 |
| Msa0479100 | Msa0812970 | 0.817126 | 3.876767e-52 | -8.615850e-47 |
| Msa0479100 | Msa0820520 | 0.829119 | 6.151419e-55 | -8.615850e-47 |
| Msa0479100 | Msa0826650 | 0.813078 | 3.070028e-51 | -8.615850e-47 |
| Msa0479100 | Msa0828900 | 0.849311 | 3.508025e-60 | -8.615850e-47 |
| Msa0479100 | Msa0829060 | 0.813243 | 2.824931e-51 | -8.615850e-47 |
| Msa0479100 | Msa0839830 | 0.804418 | 2.181517e-49 | -8.615850e-47 |
| Msa0479100 | Msa0853480 | 0.802992 | 4.311965e-49 | -8.615850e-47 |
| Msa0479100 | Msa0853500 | 0.822520 | 2.266837e-53 | -8.615850e-47 |
| Msa0479100 | Msa0860920 | 0.853031 | 3.126117e-61 | -8.615850e-47 |
| Msa0479100 | Msa0864690 | 0.811148 | 8.092626e-51 | -8.615850e-47 |
| Msa0479100 | Msa0899700 | 0.810180 | 1.310184e-50 | -8.615850e-47 |
| Msa0479100 | Msa0903490 | 0.802091 | 6.614536e-49 | -8.615850e-47 |
| Msa0479100 | Msa0964680 | 0.820431 | 6.883788e-53 | -8.615850e-47 |
| Msa0479100 | Msa0968780 | 0.836282 | 1.025325e-56 | -8.615850e-47 |
| Msa0479100 | Msa0984000 | 0.865597 | 5.261183e-65 | -8.615850e-47 |
| Msa0479100 | Msa1079480 | 0.804746 | 1.862724e-49 | -8.615850e-47 |
| Msa0479100 | Msa1108540 | -0.807724 | 4.395680e-50 | -8.615850e-47 |
| Msa0479100 | Msa1144730 | 0.818796 | 1.625848e-52 | -8.615850e-47 |
| Msa0479100 | Msa1152290 | -0.803649 | 3.151282e-49 | -8.615850e-47 |
| Msa0479100 | Msa1173380 | 0.829874 | 4.032288e-55 | -8.615850e-47 |
| Msa0479100 | Msa1180050 | 0.836873 | 7.249950e-57 | -8.615850e-47 |
| Msa0479100 | Msa1182800 | 0.819340 | 1.222747e-52 | -8.615850e-47 |
| Msa0479100 | Msa1182830 | 0.828118 | 1.073921e-54 | -8.615850e-47 |
| Msa0479100 | Msa1198720 | 0.827194 | 1.790214e-54 | -8.615850e-47 |
| Msa0479100 | Msa1232270 | 0.848526 | 5.793786e-60 | -8.615850e-47 |
| Msa0479100 | Msa1252070 | 0.803406 | 3.539044e-49 | -8.615850e-47 |
| Msa0479100 | Msa1252300 | 0.818702 | 1.707324e-52 | -8.615850e-47 |
| Msa0479100 | Msa1270770 | 0.832623 | 8.503192e-56 | -8.615850e-47 |
| Msa0479100 | Msa1313050 | 0.845661 | 3.533259e-59 | -8.615850e-47 |
| Msa0479100 | Msa1326400 | 0.807266 | 5.497845e-50 | -8.615850e-47 |
| Msa0479100 | Msa1349810 | 0.819369 | 1.204400e-52 | -8.615850e-47 |
| Msa0479100 | Msa1354090 | 0.852874 | 3.466308e-61 | -8.615850e-47 |
| Msa0479100 | Msa1358340 | 0.823716 | 1.192214e-53 | -8.615850e-47 |
| Msa0479100 | Msa1359890 | 0.821029 | 5.015945e-53 | -8.615850e-47 |
| Msa0479100 | Msa1394900 | 0.832834 | 7.541070e-56 | -8.615850e-47 |
| Msa0479100 | Msa1406020 | 0.810346 | 1.206842e-50 | -8.615850e-47 |
| Msa0479100 | Msa1434660 | 0.841141 | 5.688600e-58 | -8.615850e-47 |
| Msa0245870 | Msa0479100 | 0.805272 | 1.446489e-49 | -8.615850e-47 |
| Msa0260470 | Msa0479100 | 0.814835 | 1.258571e-51 | -8.615850e-47 |
| Msa0278670 | Msa0479100 | 0.831156 | 1.958328e-55 | -8.615850e-47 |
| Msa0281940 | Msa0479100 | 0.807362 | 5.246917e-50 | -8.615850e-47 |
| Msa0304110 | Msa0479100 | 0.816637 | 4.990796e-52 | -8.615850e-47 |
| Msa0318070 | Msa0479100 | 0.832428 | 9.507016e-56 | -8.615850e-47 |
| Msa0341190 | Msa0479100 | 0.813748 | 2.187877e-51 | -8.615850e-47 |
| Msa0344680 | Msa0479100 | 0.821781 | 3.363349e-53 | -8.615850e-47 |
| Msa0354390 | Msa0479100 | 0.809359 | 1.967349e-50 | -8.615850e-47 |
| Msa0358290 | Msa0479100 | 0.820956 | 5.215057e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479100 | MtrunA17_Chr3g0141831 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Msa0479100 | MtrunA17_Chr1g0155531 | 69.903 | 309 | 81 | 2 | 4 | 303 | 1 | 306 | 1.64e-158 | 447 |
| Msa0479100 | MtrunA17_Chr5g0406211 | 36.000 | 175 | 105 | 4 | 131 | 303 | 141 | 310 | 1.81e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479100 | AT1G75380.3 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479100 | AT1G75380.1 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479100 | AT1G75380.4 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479100 | AT1G75380.2 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479100 | AT1G19660.3 | 69.625 | 293 | 87 | 2 | 29 | 320 | 36 | 327 | 2.71e-150 | 427 |
| Msa0479100 | AT1G19660.2 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0479100 | AT1G19660.1 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0479100 | AT5G66050.2 | 36.364 | 176 | 104 | 4 | 130 | 303 | 49 | 218 | 2.75e-22 | 94.7 |
| Msa0479100 | AT5G66050.3 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.45e-22 | 95.5 |
| Msa0479100 | AT5G66050.1 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.98e-22 | 95.5 |
| Msa0479100 | AT5G66050.4 | 35.294 | 170 | 102 | 4 | 130 | 297 | 143 | 306 | 3.10e-19 | 87.8 |
Find 93 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 3_3:-83925577 | Msa0479100:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 3_3:-83926217 | Msa0479100:CDS |
| AAAAGACATACAAACGATTA+TGG | 0.245394 | 3_3:+83927195 | None:intergenic |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 3_3:+83928344 | None:intergenic |
| ATTTAATTTAATTTAACTAT+TGG | 0.308594 | 3_3:+83928613 | None:intergenic |
| ACTCCAACTCAACCTTCTTC+TGG | 0.311094 | 3_3:-83925459 | Msa0479100:three_prime_UTR |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 3_3:-83928480 | Msa0479100:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 3_3:+83926126 | None:intergenic |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 3_3:+83927241 | None:intergenic |
| TTCAAATGGCAGTGGAAGTA+TGG | 0.360002 | 3_3:-83928273 | Msa0479100:CDS |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 3_3:-83925576 | Msa0479100:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 3_3:+83927287 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 3_3:-83927278 | Msa0479100:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 3_3:-83926130 | Msa0479100:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 3_3:+83928336 | None:intergenic |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 3_3:-83928489 | Msa0479100:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 3_3:-83925553 | Msa0479100:CDS |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 3_3:+83925912 | None:intergenic |
| AAAGACATACAAACGATTAT+GGG | 0.408082 | 3_3:+83927196 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 3_3:+83926219 | None:intergenic |
| GAGGTGAAGAGTGGAGGAGA+CGG | 0.411094 | 3_3:-83927352 | Msa0479100:CDS |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 3_3:-83926672 | Msa0479100:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 3_3:+83928419 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 3_3:-83927031 | Msa0479100:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 3_3:+83928407 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 3_3:-83926183 | Msa0479100:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 3_3:+83925573 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 3_3:+83926127 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 3_3:+83927259 | None:intergenic |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 3_3:-83925927 | Msa0479100:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 3_3:-83926834 | Msa0479100:CDS |
| ATTCCTTCTTGTTTGTGTAA+AGG | 0.469180 | 3_3:+83928738 | None:intergenic |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 3_3:+83928632 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 3_3:+83928337 | None:intergenic |
| AACTCATCTTCAAATGGCAG+TGG | 0.487751 | 3_3:-83928281 | Msa0479100:CDS |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 3_3:+83928327 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 3_3:-83928215 | Msa0479100:intron |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 3_3:+83928670 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 3_3:-83927361 | Msa0479100:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 3_3:-83927229 | Msa0479100:CDS |
| AGACCAGAAGAAGGTTGAGT+TGG | 0.494507 | 3_3:+83925456 | None:intergenic |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 3_3:-83928467 | Msa0479100:CDS |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 3_3:-83926150 | Msa0479100:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 3_3:-83926204 | Msa0479100:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 3_3:-83927025 | Msa0479100:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 3_3:-83927292 | Msa0479100:CDS |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 3_3:+83926141 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 3_3:+83925887 | None:intergenic |
| AAAGAAAAGAGACCAGAAGA+AGG | 0.530876 | 3_3:+83925447 | None:intergenic |
| AGTTTCAACTCATCTTCAAA+TGG | 0.535944 | 3_3:-83928287 | Msa0479100:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 3_3:+83925832 | None:intergenic |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 3_3:+83925900 | None:intergenic |
| TCACCTTTACACAAACAAGA+AGG | 0.542812 | 3_3:-83928741 | Msa0479100:five_prime_UTR |
| AGGTGAAGAGTGGAGGAGAC+GGG | 0.545299 | 3_3:-83927351 | Msa0479100:CDS |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 3_3:-83928431 | Msa0479100:CDS |
| AAATTAAATTAAAACGAGAT+CGG | 0.553672 | 3_3:-83928599 | Msa0479100:five_prime_UTR |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 3_3:-83926639 | Msa0479100:intron |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 3_3:-83927242 | Msa0479100:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 3_3:+83926470 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 3_3:+83927247 | None:intergenic |
| ACGGGTTCATAGTCAAAATG+AGG | 0.561200 | 3_3:-83927333 | Msa0479100:CDS |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 3_3:-83926833 | Msa0479100:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 3_3:-83928582 | Msa0479100:intron |
| AAATGAAGAGAAGAAAGAAG+AGG | 0.566491 | 3_3:+83928708 | None:intergenic |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 3_3:-83926159 | Msa0479100:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 3_3:-83928393 | Msa0479100:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 3_3:+83926854 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 3_3:-83928394 | Msa0479100:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 3_3:-83926852 | Msa0479100:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 3_3:-83926125 | Msa0479100:intron |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 3_3:-83926478 | Msa0479100:intron |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 3_3:-83925598 | Msa0479100:intron |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 3_3:+83927278 | None:intergenic |
| AAGACATACAAACGATTATG+GGG | 0.611378 | 3_3:+83927197 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 3_3:-83926669 | Msa0479100:CDS |
| TTCATAGTCAAAATGAGGGA+TGG | 0.616988 | 3_3:-83927328 | Msa0479100:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 3_3:+83927027 | None:intergenic |
| CGGGTTCATAGTCAAAATGA+GGG | 0.637653 | 3_3:-83927332 | Msa0479100:CDS |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 3_3:-83927358 | Msa0479100:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 3_3:+83926499 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 3_3:-83927235 | Msa0479100:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 3_3:-83925601 | Msa0479100:intron |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 3_3:-83925904 | Msa0479100:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 3_3:-83925843 | Msa0479100:CDS |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 3_3:-83928416 | Msa0479100:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 3_3:-83925597 | Msa0479100:intron |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 3_3:+83926143 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 3_3:+83926492 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 3_3:-83928392 | Msa0479100:CDS |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 3_3:+83926142 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 3_3:-83927239 | Msa0479100:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 3_3:+83927277 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 3_3:-83927289 | Msa0479100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAATAATT+GGG | + | chr3_3:83926398-83926417 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAATAAT+TGG | + | chr3_3:83926399-83926418 | None:intergenic | 0.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | - | chr3_3:83925718-83925737 | Msa0479100:intron | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | + | chr3_3:83926188-83926207 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | + | chr3_3:83926189-83926208 | None:intergenic | 10.0% |
| !! | AAATTAAATTAAAACGAGAT+CGG | - | chr3_3:83925636-83925655 | Msa0479100:intron | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | - | chr3_3:83925728-83925747 | Msa0479100:intron | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | - | chr3_3:83926078-83926097 | Msa0479100:intron | 15.0% |
| !!! | CAGTTACTTTAAAAAAAAAA+TGG | + | chr3_3:83926763-83926782 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | + | chr3_3:83925568-83925587 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | + | chr3_3:83925606-83925625 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | + | chr3_3:83926546-83926565 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | - | chr3_3:83926581-83926600 | Msa0479100:intron | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | + | chr3_3:83926817-83926836 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | - | chr3_3:83926819-83926838 | Msa0479100:intron | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | - | chr3_3:83927108-83927127 | Msa0479100:intron | 20.0% |
| !!! | TTGGATCCTATATATTATTT+TGG | - | chr3_3:83927127-83927146 | Msa0479100:intron | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | + | chr3_3:83927136-83927155 | None:intergenic | 20.0% |
| !!! | ATATTACTTGTTTTTGGTAT+AGG | - | chr3_3:83927682-83927701 | Msa0479100:intron | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | - | chr3_3:83927974-83927993 | Msa0479100:intron | 20.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | - | chr3_3:83925842-83925861 | Msa0479100:CDS | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | - | chr3_3:83926056-83926075 | Msa0479100:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | - | chr3_3:83926454-83926473 | Msa0479100:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | + | chr3_3:83926538-83926557 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | + | chr3_3:83926684-83926703 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | + | chr3_3:83926744-83926763 | None:intergenic | 25.0% |
| !!! | GTGAAAATAAATTTGTTGTG+TGG | - | chr3_3:83926845-83926864 | Msa0479100:CDS | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | + | chr3_3:83927042-83927061 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | + | chr3_3:83927043-83927062 | None:intergenic | 25.0% |
| !! | TATCTTCCAATGTAATTTTG+TGG | - | chr3_3:83927160-83927179 | Msa0479100:intron | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | + | chr3_3:83927279-83927298 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | - | chr3_3:83927279-83927298 | Msa0479100:CDS | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | + | chr3_3:83927318-83927337 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | + | chr3_3:83927384-83927403 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | - | chr3_3:83927383-83927402 | Msa0479100:intron | 25.0% |
| ! | ACTACAATACAGTTAAGATT+AGG | + | chr3_3:83927470-83927489 | None:intergenic | 25.0% |
| !!! | CTGACAATATTACTTGTTTT+TGG | - | chr3_3:83927676-83927695 | Msa0479100:intron | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | + | chr3_3:83928019-83928038 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | - | chr3_3:83928018-83928037 | Msa0479100:intron | 25.0% |
| !!! | GTTTTTGAAGATACATTTCA+AGG | - | chr3_3:83928136-83928155 | Msa0479100:intron | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | + | chr3_3:83928542-83928561 | None:intergenic | 25.0% |
| ! | ATTCCTTCTTGTTTGTGTAA+AGG | + | chr3_3:83925500-83925519 | None:intergenic | 30.0% |
| AAATGAAGAGAAGAAAGAAG+AGG | + | chr3_3:83925530-83925549 | None:intergenic | 30.0% | |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | - | chr3_3:83925737-83925756 | Msa0479100:intron | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | - | chr3_3:83925755-83925774 | Msa0479100:intron | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | - | chr3_3:83925768-83925787 | Msa0479100:intron | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | - | chr3_3:83925841-83925860 | Msa0479100:CDS | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | - | chr3_3:83925843-83925862 | Msa0479100:CDS | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | + | chr3_3:83925901-83925920 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | + | chr3_3:83925902-83925921 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | + | chr3_3:83925911-83925930 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | - | chr3_3:83925948-83925967 | Msa0479100:intron | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | - | chr3_3:83926020-83926039 | Msa0479100:intron | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | + | chr3_3:83926123-83926142 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | + | chr3_3:83926388-83926407 | None:intergenic | 30.0% | |
| ! | ATACTATTGGATTTTACGTC+AGG | + | chr3_3:83926512-83926531 | None:intergenic | 30.0% |
| ! | TTTTATAAGACTAGAAGCCT+TGG | - | chr3_3:83926797-83926816 | Msa0479100:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | + | chr3_3:83927041-83927060 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | + | chr3_3:83927069-83927088 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | + | chr3_3:83927070-83927089 | None:intergenic | 30.0% | |
| GATGAACCACAAAATTACAT+TGG | + | chr3_3:83927169-83927188 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | - | chr3_3:83927180-83927199 | Msa0479100:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | + | chr3_3:83927307-83927326 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | - | chr3_3:83927340-83927359 | Msa0479100:CDS | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | + | chr3_3:83927346-83927365 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | - | chr3_3:83927353-83927372 | Msa0479100:CDS | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | + | chr3_3:83927654-83927673 | None:intergenic | 30.0% |
| GTAATATTGTCAGACAAATC+TGG | + | chr3_3:83927669-83927688 | None:intergenic | 30.0% | |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | - | chr3_3:83927686-83927705 | Msa0479100:intron | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | + | chr3_3:83927911-83927930 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | - | chr3_3:83927910-83927929 | Msa0479100:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | + | chr3_3:83927922-83927941 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | + | chr3_3:83928111-83928130 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | - | chr3_3:83928110-83928129 | Msa0479100:intron | 30.0% | |
| AGTATTCATAATCTCTGTTC+TGG | - | chr3_3:83928180-83928199 | Msa0479100:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | - | chr3_3:83928560-83928579 | Msa0479100:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | - | chr3_3:83928659-83928678 | Msa0479100:five_prime_UTR | 30.0% | |
| TCACCTTTACACAAACAAGA+AGG | - | chr3_3:83925494-83925513 | Msa0479100:exon | 35.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | - | chr3_3:83925746-83925765 | Msa0479100:intron | 35.0% | |
| GGTATAGTGGTACATACTAT+TGG | + | chr3_3:83926525-83926544 | None:intergenic | 35.0% | |
| AAAATCAAGTTATTGCCCAG+GGG | + | chr3_3:83926657-83926676 | None:intergenic | 35.0% | |
| CAAAATCAAGTTATTGCCCA+GGG | + | chr3_3:83926658-83926677 | None:intergenic | 35.0% | |
| ACAAAATCAAGTTATTGCCC+AGG | + | chr3_3:83926659-83926678 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+CGG | - | chr3_3:83926689-83926708 | Msa0479100:intron | 35.0% | |
| ATATAGTTCAAATTCCACCC+GGG | - | chr3_3:83926690-83926709 | Msa0479100:intron | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | - | chr3_3:83926864-83926883 | Msa0479100:intron | 35.0% |
| TTCATAGTCAAAATGAGGGA+TGG | - | chr3_3:83926907-83926926 | Msa0479100:intron | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | - | chr3_3:83927075-83927094 | Msa0479100:intron | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | - | chr3_3:83927402-83927421 | Msa0479100:intron | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | - | chr3_3:83927530-83927549 | Msa0479100:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | - | chr3_3:83927563-83927582 | Msa0479100:intron | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | + | chr3_3:83927616-83927635 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | + | chr3_3:83927649-83927668 | None:intergenic | 35.0% |
| ATGAATTACCTTGCATCTGA+CGG | + | chr3_3:83927768-83927787 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | + | chr3_3:83927860-83927879 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | - | chr3_3:83927876-83927895 | Msa0479100:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | - | chr3_3:83927894-83927913 | Msa0479100:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | - | chr3_3:83928031-83928050 | Msa0479100:intron | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | - | chr3_3:83928052-83928071 | Msa0479100:intron | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | + | chr3_3:83928112-83928131 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | + | chr3_3:83928229-83928248 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | - | chr3_3:83928236-83928255 | Msa0479100:CDS | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | - | chr3_3:83928308-83928327 | Msa0479100:CDS | 35.0% | |
| CAAGAGTAAAAACACAGGTA+AGG | + | chr3_3:83928447-83928466 | None:intergenic | 35.0% | |
| !! | CTTACCTGTGTTTTTACTCT+TGG | - | chr3_3:83928445-83928464 | Msa0479100:CDS | 35.0% |
| GGGACCAACTTAATCAATTT+AGG | - | chr3_3:83928658-83928677 | Msa0479100:five_prime_UTR | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | + | chr3_3:83928665-83928684 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | - | chr3_3:83928682-83928701 | Msa0479100:five_prime_UTR | 35.0% | |
| GATCGGTGATTCATCTTACA+AGG | - | chr3_3:83925653-83925672 | Msa0479100:intron | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | - | chr3_3:83925804-83925823 | Msa0479100:CDS | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | + | chr3_3:83925894-83925913 | None:intergenic | 40.0% | |
| AACTCATCTTCAAATGGCAG+TGG | - | chr3_3:83925954-83925973 | Msa0479100:intron | 40.0% | |
| TTCAAATGGCAGTGGAAGTA+TGG | - | chr3_3:83925962-83925981 | Msa0479100:intron | 40.0% | |
| ATCGAACTAACTGTAGTGTG+TGG | - | chr3_3:83926287-83926306 | Msa0479100:intron | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | - | chr3_3:83926288-83926307 | Msa0479100:intron | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | + | chr3_3:83926609-83926628 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | + | chr3_3:83926613-83926632 | None:intergenic | 40.0% |
| TATAGTTCAAATTCCACCCG+GGG | - | chr3_3:83926691-83926710 | Msa0479100:intron | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+GGG | + | chr3_3:83926710-83926729 | None:intergenic | 40.0% |
| ! | GATCATTTTACAATAGCCCC+CGG | + | chr3_3:83926711-83926730 | None:intergenic | 40.0% |
| ACGGGTTCATAGTCAAAATG+AGG | - | chr3_3:83926902-83926921 | Msa0479100:intron | 40.0% | |
| CGGGTTCATAGTCAAAATGA+GGG | - | chr3_3:83926903-83926922 | Msa0479100:intron | 40.0% | |
| TTCAACACAATTGCAGGATG+TGG | + | chr3_3:83926991-83927010 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | - | chr3_3:83926993-83927012 | Msa0479100:intron | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | + | chr3_3:83926997-83927016 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | - | chr3_3:83926996-83927015 | Msa0479100:intron | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | - | chr3_3:83927000-83927019 | Msa0479100:intron | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | - | chr3_3:83927204-83927223 | Msa0479100:intron | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | - | chr3_3:83927210-83927229 | Msa0479100:CDS | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | - | chr3_3:83927401-83927420 | Msa0479100:intron | 40.0% | |
| ! | TAGGAGTATGCAACAGCAAA+GGG | + | chr3_3:83927451-83927470 | None:intergenic | 40.0% |
| ! | TTAGGAGTATGCAACAGCAA+AGG | + | chr3_3:83927452-83927471 | None:intergenic | 40.0% |
| AGTTACTAAGAGAGTTCAGG+AGG | - | chr3_3:83927566-83927585 | Msa0479100:intron | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | - | chr3_3:83927596-83927615 | Msa0479100:intron | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | + | chr3_3:83927642-83927661 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | + | chr3_3:83927643-83927662 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | + | chr3_3:83927644-83927663 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | + | chr3_3:83927746-83927765 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | + | chr3_3:83927824-83927843 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | - | chr3_3:83927863-83927882 | Msa0479100:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | + | chr3_3:83927874-83927893 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | - | chr3_3:83928105-83928124 | Msa0479100:intron | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | - | chr3_3:83928114-83928133 | Msa0479100:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | + | chr3_3:83928326-83928345 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | - | chr3_3:83928331-83928350 | Msa0479100:CDS | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | + | chr3_3:83928338-83928357 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | + | chr3_3:83928351-83928370 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | + | chr3_3:83928406-83928425 | None:intergenic | 40.0% | |
| !! | ACCTGTGTTTTTACTCTTGG+AGG | - | chr3_3:83928448-83928467 | Msa0479100:CDS | 40.0% |
| ACCTCCAAGAGTAAAAACAC+AGG | + | chr3_3:83928452-83928471 | None:intergenic | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | + | chr3_3:83925819-83925838 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | - | chr3_3:83925819-83925838 | Msa0479100:CDS | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | + | chr3_3:83925831-83925850 | None:intergenic | 45.0% |
| ATGCTGCCAAAGTTAGCACT+CGG | - | chr3_3:83926260-83926279 | Msa0479100:intron | 45.0% | |
| ATCACACCGAGTGCTAACTT+TGG | + | chr3_3:83926269-83926288 | None:intergenic | 45.0% | |
| TCAGCTTAGTGGCGAGAATA+GGG | - | chr3_3:83926320-83926339 | Msa0479100:intron | 45.0% | |
| ATGTGTATGGTGTACTCCAG+TGG | - | chr3_3:83926467-83926486 | Msa0479100:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | - | chr3_3:83926473-83926492 | Msa0479100:intron | 45.0% | |
| ! | GATTTTACGTCAGGTACTCC+GGG | + | chr3_3:83926503-83926522 | None:intergenic | 45.0% |
| ! | GGATTTTACGTCAGGTACTC+CGG | + | chr3_3:83926504-83926523 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | - | chr3_3:83926622-83926641 | Msa0479100:intron | 45.0% |
| ATAGTTCAAATTCCACCCGG+GGG | - | chr3_3:83926692-83926711 | Msa0479100:intron | 45.0% | |
| TGTGTAGTTGAGGTGAAGAG+TGG | - | chr3_3:83926874-83926893 | Msa0479100:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | - | chr3_3:83927006-83927025 | Msa0479100:intron | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | + | chr3_3:83927211-83927230 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | + | chr3_3:83927641-83927660 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | + | chr3_3:83927739-83927758 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | - | chr3_3:83927818-83927837 | Msa0479100:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | - | chr3_3:83927854-83927873 | Msa0479100:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | + | chr3_3:83928004-83928023 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | + | chr3_3:83928096-83928115 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | + | chr3_3:83928097-83928116 | None:intergenic | 45.0% |
| ACTCCAACTCAACCTTCTTC+TGG | - | chr3_3:83928776-83928795 | Msa0479100:five_prime_UTR | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | + | chr3_3:83928782-83928801 | None:intergenic | 45.0% | |
| !!! | ATTTAATTTAATTTAACTAT+TGG | + | chr3_3:83925625-83925644 | None:intergenic | 5.0% |
| !! | AAAATTGAATTAAATTAATT+AGG | + | chr3_3:83925692-83925711 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | - | chr3_3:83926295-83926314 | Msa0479100:intron | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | - | chr3_3:83926319-83926338 | Msa0479100:intron | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | - | chr3_3:83926321-83926340 | Msa0479100:intron | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | + | chr3_3:83926629-83926648 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | - | chr3_3:83926627-83926646 | Msa0479100:intron | 50.0% |
| ATCAAGTTATTGCCCAGGGG+CGG | + | chr3_3:83926654-83926673 | None:intergenic | 50.0% | |
| ! | ATTTTACAATAGCCCCCGGG+TGG | + | chr3_3:83926707-83926726 | None:intergenic | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | - | chr3_3:83926877-83926896 | Msa0479100:intron | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | + | chr3_3:83926979-83926998 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | - | chr3_3:83927757-83927776 | Msa0479100:intron | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | - | chr3_3:83927991-83928010 | Msa0479100:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | + | chr3_3:83928001-83928020 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | - | chr3_3:83928076-83928095 | Msa0479100:intron | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | + | chr3_3:83928095-83928114 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | - | chr3_3:83928634-83928653 | Msa0479100:five_prime_UTR | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | - | chr3_3:83928637-83928656 | Msa0479100:five_prime_UTR | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | - | chr3_3:83928638-83928657 | Msa0479100:five_prime_UTR | 50.0% |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | - | chr3_3:83926309-83926328 | Msa0479100:intron | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | - | chr3_3:83926324-83926343 | Msa0479100:intron | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | - | chr3_3:83926336-83926355 | Msa0479100:intron | 55.0% | |
| GACCTAGACTAGGCCCATAC+CGG | - | chr3_3:83926346-83926365 | Msa0479100:intron | 55.0% | |
| AGCACTTGCCACACCGGTAT+GGG | + | chr3_3:83926362-83926381 | None:intergenic | 55.0% | |
| TAGCACTTGCCACACCGGTA+TGG | + | chr3_3:83926363-83926382 | None:intergenic | 55.0% | |
| TGGTGTAGCACTTGCCACAC+CGG | + | chr3_3:83926368-83926387 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+CGG | - | chr3_3:83926883-83926902 | Msa0479100:intron | 55.0% | |
| AGGTGAAGAGTGGAGGAGAC+GGG | - | chr3_3:83926884-83926903 | Msa0479100:intron | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | - | chr3_3:83926943-83926962 | Msa0479100:intron | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | - | chr3_3:83926946-83926965 | Msa0479100:intron | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | + | chr3_3:83926951-83926970 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | + | chr3_3:83926960-83926979 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | - | chr3_3:83926957-83926976 | Msa0479100:intron | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | + | chr3_3:83926961-83926980 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | - | chr3_3:83928085-83928104 | Msa0479100:intron | 55.0% | |
| CACCGGTATGGGCCTAGTCT+AGG | + | chr3_3:83926351-83926370 | None:intergenic | 60.0% | |
| AGACTAGGCCCATACCGGTG+TGG | - | chr3_3:83926351-83926370 | Msa0479100:intron | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | - | chr3_3:83926482-83926501 | Msa0479100:CDS | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | + | chr3_3:83927637-83927656 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | - | chr3_3:83928392-83928411 | Msa0479100:CDS | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | + | chr3_3:83926486-83926505 | None:intergenic | 65.0% | |
| TTATTGCCCAGGGGCGGACC+TGG | + | chr3_3:83926648-83926667 | None:intergenic | 65.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | - | chr3_3:83926638-83926657 | Msa0479100:intron | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | - | chr3_3:83926639-83926658 | Msa0479100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83925455 | 83928802 | 83925455 | ID=Msa0479100;Name=Msa0479100 |
| chr3_3 | mRNA | 83925455 | 83928802 | 83925455 | ID=Msa0479100-mRNA-1;Parent=Msa0479100;Name=Msa0479100-mRNA-1;_AED=0.21;_eAED=0.21;_QI=226|0.88|0.9|1|0.77|0.6|10|49|355 |
| chr3_3 | exon | 83925455 | 83925608 | 83925455 | ID=Msa0479100-mRNA-1:exon:23773;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83925788 | 83925935 | 83925788 | ID=Msa0479100-mRNA-1:exon:23772;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83926126 | 83926244 | 83926126 | ID=Msa0479100-mRNA-1:exon:23771;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83926479 | 83926553 | 83926479 | ID=Msa0479100-mRNA-1:exon:23770;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83926640 | 83926705 | 83926640 | ID=Msa0479100-mRNA-1:exon:23769;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83926826 | 83926882 | 83926826 | ID=Msa0479100-mRNA-1:exon:23768;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83927008 | 83927057 | 83927008 | ID=Msa0479100-mRNA-1:exon:23767;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83927206 | 83927376 | 83927206 | ID=Msa0479100-mRNA-1:exon:23766;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83928216 | 83928498 | 83928216 | ID=Msa0479100-mRNA-1:exon:23765;Parent=Msa0479100-mRNA-1 |
| chr3_3 | exon | 83928583 | 83928802 | 83928583 | ID=Msa0479100-mRNA-1:exon:23764;Parent=Msa0479100-mRNA-1 |
| chr3_3 | five_prime_UTR | 83928583 | 83928802 | 83928583 | ID=Msa0479100-mRNA-1:five_prime_utr;Parent=Msa0479100-mRNA-1 |
| chr3_3 | five_prime_UTR | 83928493 | 83928498 | 83928493 | ID=Msa0479100-mRNA-1:five_prime_utr;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83928216 | 83928492 | 83928216 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83927206 | 83927376 | 83927206 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83927008 | 83927057 | 83927008 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83926826 | 83926882 | 83926826 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83926640 | 83926705 | 83926640 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83926479 | 83926553 | 83926479 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83926126 | 83926244 | 83926126 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83925788 | 83925935 | 83925788 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | CDS | 83925504 | 83925608 | 83925504 | ID=Msa0479100-mRNA-1:cds;Parent=Msa0479100-mRNA-1 |
| chr3_3 | three_prime_UTR | 83925455 | 83925503 | 83925455 | ID=Msa0479100-mRNA-1:three_prime_utr;Parent=Msa0479100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
