Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479030 | XP_013462149.1 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479030 | sp|Q9FWS6|BBD1_ARATH | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.28e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479030 | B7FJ72 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0479030 | 0.830338 | 3.106538e-55 | -8.615850e-47 |
| Msa0049330 | Msa0479030 | 0.802973 | 4.350058e-49 | -8.615850e-47 |
| Msa0064550 | Msa0479030 | 0.868669 | 5.499108e-66 | -8.615850e-47 |
| Msa0072860 | Msa0479030 | 0.800370 | 1.487976e-48 | -8.615850e-47 |
| Msa0092960 | Msa0479030 | 0.827919 | 1.198802e-54 | -8.615850e-47 |
| Msa0094940 | Msa0479030 | -0.807415 | 5.111252e-50 | -8.615850e-47 |
| Msa0104360 | Msa0479030 | 0.822501 | 2.290560e-53 | -8.615850e-47 |
| Msa0108070 | Msa0479030 | 0.820466 | 6.759685e-53 | -8.615850e-47 |
| Msa0109490 | Msa0479030 | 0.863390 | 2.575299e-64 | -8.615850e-47 |
| Msa0143280 | Msa0479030 | 0.835050 | 2.102293e-56 | -8.615850e-47 |
| Msa0146680 | Msa0479030 | 0.825709 | 4.043612e-54 | -8.615850e-47 |
| Msa0153440 | Msa0479030 | 0.811352 | 7.308367e-51 | -8.615850e-47 |
| Msa0154240 | Msa0479030 | 0.831844 | 1.325471e-55 | -8.615850e-47 |
| Msa0154270 | Msa0479030 | 0.855611 | 5.618533e-62 | -8.615850e-47 |
| Msa0198440 | Msa0479030 | 0.820197 | 7.787899e-53 | -8.615850e-47 |
| Msa0225880 | Msa0479030 | 0.812627 | 3.855128e-51 | -8.615850e-47 |
| Msa0226620 | Msa0479030 | -0.804874 | 1.752172e-49 | -8.615850e-47 |
| Msa0378670 | Msa0479030 | 0.827087 | 1.899021e-54 | -8.615850e-47 |
| Msa0378700 | Msa0479030 | 0.819084 | 1.398288e-52 | -8.615850e-47 |
| Msa0379340 | Msa0479030 | -0.827970 | 1.165929e-54 | -8.615850e-47 |
| Msa0380650 | Msa0479030 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0384530 | Msa0479030 | 0.912402 | 2.029067e-83 | -8.615850e-47 |
| Msa0387970 | Msa0479030 | 0.832130 | 1.126430e-55 | -8.615850e-47 |
| Msa0392050 | Msa0479030 | 0.806281 | 8.876296e-50 | -8.615850e-47 |
| Msa0404690 | Msa0479030 | 0.804588 | 2.010342e-49 | -8.615850e-47 |
| Msa0428850 | Msa0479030 | -0.831592 | 1.529915e-55 | -8.615850e-47 |
| Msa0430290 | Msa0479030 | 0.802609 | 5.172481e-49 | -8.615850e-47 |
| Msa0435010 | Msa0479030 | 0.940224 | 3.363840e-100 | -8.615850e-47 |
| Msa0469950 | Msa0479030 | 0.806917 | 6.517741e-50 | -8.615850e-47 |
| Msa0479030 | Msa0479100 | 0.973370 | 2.586531e-136 | -8.615850e-47 |
| Msa0479030 | Msa0479950 | 0.913281 | 7.377224e-84 | -8.615850e-47 |
| Msa0479030 | Msa0521140 | 0.822165 | 2.740408e-53 | -8.615850e-47 |
| Msa0479030 | Msa0530340 | 0.828043 | 1.119369e-54 | -8.615850e-47 |
| Msa0479030 | Msa0545230 | 0.800282 | 1.550848e-48 | -8.615850e-47 |
| Msa0479030 | Msa0548210 | 0.819478 | 1.137326e-52 | -8.615850e-47 |
| Msa0479030 | Msa0549540 | 0.827117 | 1.867015e-54 | -8.615850e-47 |
| Msa0479030 | Msa0556070 | 0.845340 | 4.317646e-59 | -8.615850e-47 |
| Msa0479030 | Msa0570680 | 0.802541 | 5.342184e-49 | -8.615850e-47 |
| Msa0479030 | Msa0600820 | 0.811367 | 7.254452e-51 | -8.615850e-47 |
| Msa0479030 | Msa0604880 | 0.814735 | 1.323996e-51 | -8.615850e-47 |
| Msa0479030 | Msa0605250 | 0.819579 | 1.078674e-52 | -8.615850e-47 |
| Msa0479030 | Msa0622250 | 0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0479030 | Msa0627050 | 0.837660 | 4.559978e-57 | -8.615850e-47 |
| Msa0479030 | Msa0646190 | 0.811350 | 7.315329e-51 | -8.615850e-47 |
| Msa0479030 | Msa0649310 | 0.806579 | 7.681510e-50 | -8.615850e-47 |
| Msa0479030 | Msa0675010 | 0.853656 | 2.068379e-61 | -8.615850e-47 |
| Msa0479030 | Msa0688800 | 0.806593 | 7.628419e-50 | -8.615850e-47 |
| Msa0479030 | Msa0693400 | 0.846382 | 2.249968e-59 | -8.615850e-47 |
| Msa0479030 | Msa0709660 | 0.964577 | 1.677450e-123 | -8.615850e-47 |
| Msa0479030 | Msa0719970 | 0.804201 | 2.420442e-49 | -8.615850e-47 |
| Msa0479030 | Msa0740210 | 0.805762 | 1.141195e-49 | -8.615850e-47 |
| Msa0479030 | Msa0744500 | 0.823658 | 1.230429e-53 | -8.615850e-47 |
| Msa0479030 | Msa0749150 | 0.882898 | 7.078523e-71 | -8.615850e-47 |
| Msa0479030 | Msa0775580 | 0.831775 | 1.378709e-55 | -8.615850e-47 |
| Msa0479030 | Msa0781390 | 0.817375 | 3.406638e-52 | -8.615850e-47 |
| Msa0479030 | Msa0788360 | 0.839873 | 1.221313e-57 | -8.615850e-47 |
| Msa0479030 | Msa0792880 | 0.892537 | 1.449046e-74 | -8.615850e-47 |
| Msa0479030 | Msa0803530 | 0.835530 | 1.590205e-56 | -8.615850e-47 |
| Msa0479030 | Msa0812970 | 0.814968 | 1.175856e-51 | -8.615850e-47 |
| Msa0479030 | Msa0813030 | 0.815040 | 1.132972e-51 | -8.615850e-47 |
| Msa0479030 | Msa0820520 | 0.811323 | 7.413860e-51 | -8.615850e-47 |
| Msa0479030 | Msa0826650 | 0.841445 | 4.732410e-58 | -8.615850e-47 |
| Msa0479030 | Msa0828900 | 0.891389 | 4.152141e-74 | -8.615850e-47 |
| Msa0479030 | Msa0853500 | 0.828056 | 1.111594e-54 | -8.615850e-47 |
| Msa0479030 | Msa0860920 | 0.824060 | 9.904487e-54 | -8.615850e-47 |
| Msa0479030 | Msa0864690 | 0.842772 | 2.108886e-58 | -8.615850e-47 |
| Msa0479030 | Msa0903000 | 0.809097 | 2.239587e-50 | -8.615850e-47 |
| Msa0479030 | Msa0903490 | 0.800388 | 1.475065e-48 | -8.615850e-47 |
| Msa0479030 | Msa0911910 | 0.801289 | 9.660829e-49 | -8.615850e-47 |
| Msa0479030 | Msa0935970 | 0.808364 | 3.211511e-50 | -8.615850e-47 |
| Msa0479030 | Msa0938420 | 0.809305 | 2.020548e-50 | -8.615850e-47 |
| Msa0479030 | Msa0968780 | 0.825435 | 4.693904e-54 | -8.615850e-47 |
| Msa0479030 | Msa0984000 | 0.855815 | 4.898074e-62 | -8.615850e-47 |
| Msa0479030 | Msa1041080 | 0.800743 | 1.249185e-48 | -8.615850e-47 |
| Msa0479030 | Msa1071640 | 0.807695 | 4.458412e-50 | -8.615850e-47 |
| Msa0479030 | Msa1082150 | 0.802122 | 6.517619e-49 | -8.615850e-47 |
| Msa0479030 | Msa1108540 | -0.821568 | 3.768451e-53 | -8.615850e-47 |
| Msa0479030 | Msa1125450 | 0.829769 | 4.275946e-55 | -8.615850e-47 |
| Msa0479030 | Msa1138450 | 0.822627 | 2.141272e-53 | -8.615850e-47 |
| Msa0479030 | Msa1144730 | 0.806590 | 7.638609e-50 | -8.615850e-47 |
| Msa0479030 | Msa1152290 | -0.818993 | 1.466297e-52 | -8.615850e-47 |
| Msa0479030 | Msa1161210 | 0.810877 | 9.261946e-51 | -8.615850e-47 |
| Msa0479030 | Msa1164570 | 0.828992 | 6.603176e-55 | -8.615850e-47 |
| Msa0479030 | Msa1173380 | 0.837219 | 5.914925e-57 | -8.615850e-47 |
| Msa0479030 | Msa1178120 | 0.811466 | 6.901912e-51 | -8.615850e-47 |
| Msa0479030 | Msa1180050 | 0.835943 | 1.249747e-56 | -8.615850e-47 |
| Msa0479030 | Msa1182800 | 0.821076 | 4.892155e-53 | -8.615850e-47 |
| Msa0479030 | Msa1182830 | 0.825128 | 5.548530e-54 | -8.615850e-47 |
| Msa0479030 | Msa1221360 | 0.806942 | 6.439049e-50 | -8.615850e-47 |
| Msa0479030 | Msa1232270 | 0.825238 | 5.226350e-54 | -8.615850e-47 |
| Msa0479030 | Msa1252300 | 0.842150 | 3.082917e-58 | -8.615850e-47 |
| Msa0479030 | Msa1270770 | 0.826792 | 2.233161e-54 | -8.615850e-47 |
| Msa0479030 | Msa1279330 | 0.800549 | 1.368310e-48 | -8.615850e-47 |
| Msa0479030 | Msa1313050 | 0.838135 | 3.442930e-57 | -8.615850e-47 |
| Msa0479030 | Msa1348240 | 0.804148 | 2.482290e-49 | -8.615850e-47 |
| Msa0479030 | Msa1349810 | 0.810297 | 1.236291e-50 | -8.615850e-47 |
| Msa0479030 | Msa1354090 | 0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0479030 | Msa1358340 | 0.807881 | 4.069690e-50 | -8.615850e-47 |
| Msa0479030 | Msa1359890 | 0.810965 | 8.866681e-51 | -8.615850e-47 |
| Msa0479030 | Msa1386250 | 0.845670 | 3.513855e-59 | -8.615850e-47 |
| Msa0479030 | Msa1394900 | 0.811439 | 6.996914e-51 | -8.615850e-47 |
| Msa0479030 | Msa1406020 | 0.830600 | 2.680332e-55 | -8.615850e-47 |
| Msa0479030 | Msa1416030 | 0.800272 | 1.558190e-48 | -8.615850e-47 |
| Msa0479030 | Msa1424510 | 0.800361 | 1.494051e-48 | -8.615850e-47 |
| Msa0479030 | Msa1434660 | 0.814961 | 1.180181e-51 | -8.615850e-47 |
| Msa0479030 | Msa1440980 | 0.806948 | 6.419332e-50 | -8.615850e-47 |
| Msa0479030 | Msa1463560 | -0.839980 | 1.145371e-57 | -8.615850e-47 |
| Msa0245870 | Msa0479030 | 0.829505 | 4.958934e-55 | -8.615850e-47 |
| Msa0260470 | Msa0479030 | 0.820063 | 8.361409e-53 | -8.615850e-47 |
| Msa0265980 | Msa0479030 | -0.802700 | 4.954396e-49 | -8.615850e-47 |
| Msa0278670 | Msa0479030 | 0.818763 | 1.654215e-52 | -8.615850e-47 |
| Msa0304110 | Msa0479030 | 0.818599 | 1.801978e-52 | -8.615850e-47 |
| Msa0318070 | Msa0479030 | 0.811335 | 7.372308e-51 | -8.615850e-47 |
| Msa0341190 | Msa0479030 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
| Msa0344680 | Msa0479030 | 0.809991 | 1.438775e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479030 | MtrunA17_Chr3g0141831 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Msa0479030 | MtrunA17_Chr1g0155531 | 69.903 | 309 | 81 | 2 | 4 | 303 | 1 | 306 | 1.64e-158 | 447 |
| Msa0479030 | MtrunA17_Chr5g0406211 | 36.000 | 175 | 105 | 4 | 131 | 303 | 141 | 310 | 1.81e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479030 | AT1G75380.3 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479030 | AT1G75380.1 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479030 | AT1G75380.4 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479030 | AT1G75380.2 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0479030 | AT1G19660.3 | 69.625 | 293 | 87 | 2 | 29 | 320 | 36 | 327 | 2.71e-150 | 427 |
| Msa0479030 | AT1G19660.2 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0479030 | AT1G19660.1 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0479030 | AT5G66050.2 | 36.364 | 176 | 104 | 4 | 130 | 303 | 49 | 218 | 2.75e-22 | 94.7 |
| Msa0479030 | AT5G66050.3 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.45e-22 | 95.5 |
| Msa0479030 | AT5G66050.1 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.98e-22 | 95.5 |
| Msa0479030 | AT5G66050.4 | 35.294 | 170 | 102 | 4 | 130 | 297 | 143 | 306 | 3.10e-19 | 87.8 |
Find 92 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 3_3:+83848052 | Msa0479030:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 3_3:+83847412 | Msa0479030:CDS |
| AAAAGACATACAAACGATTA+TGG | 0.245394 | 3_3:-83846434 | None:intergenic |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 3_3:-83845288 | None:intergenic |
| ACTCCAACTCAACCTTCTTC+TGG | 0.311094 | 3_3:+83848170 | Msa0479030:three_prime_UTR |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 3_3:+83845152 | Msa0479030:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 3_3:-83847503 | None:intergenic |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 3_3:-83846388 | None:intergenic |
| TTCAAATGGCAGTGGAAGTA+TGG | 0.360002 | 3_3:+83845359 | Msa0479030:CDS |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 3_3:+83848053 | Msa0479030:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 3_3:-83846342 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 3_3:+83846351 | Msa0479030:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 3_3:+83847499 | Msa0479030:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 3_3:-83845296 | None:intergenic |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 3_3:+83845143 | Msa0479030:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 3_3:+83848076 | Msa0479030:CDS |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 3_3:-83847717 | None:intergenic |
| AAAGACATACAAACGATTAT+GGG | 0.408082 | 3_3:-83846433 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 3_3:-83847410 | None:intergenic |
| GAGGTGAAGAGTGGAGGAGA+CGG | 0.411094 | 3_3:+83846277 | Msa0479030:CDS |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 3_3:+83846957 | Msa0479030:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 3_3:-83845213 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 3_3:+83846598 | Msa0479030:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 3_3:-83845225 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 3_3:+83847446 | Msa0479030:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 3_3:-83848056 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 3_3:-83847502 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 3_3:-83846370 | None:intergenic |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 3_3:+83847702 | Msa0479030:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 3_3:+83846795 | Msa0479030:CDS |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 3_3:-83845000 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 3_3:-83845295 | None:intergenic |
| AACTCATCTTCAAATGGCAG+TGG | 0.487751 | 3_3:+83845351 | Msa0479030:CDS |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 3_3:-83845305 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 3_3:+83845417 | Msa0479030:CDS |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 3_3:-83844962 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 3_3:+83846268 | Msa0479030:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 3_3:+83846400 | Msa0479030:CDS |
| AGACCAGAAGAAGGTTGAGT+TGG | 0.494507 | 3_3:-83848173 | None:intergenic |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 3_3:+83845165 | Msa0479030:CDS |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 3_3:+83847479 | Msa0479030:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 3_3:+83847425 | Msa0479030:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 3_3:+83846604 | Msa0479030:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 3_3:+83846337 | Msa0479030:CDS |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 3_3:-83847488 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 3_3:-83847742 | None:intergenic |
| AAAGAAAAGAGACCAGAAGA+AGG | 0.530876 | 3_3:-83848182 | None:intergenic |
| TCACCTTTACACACACAAGA+AGG | 0.533107 | 3_3:+83844892 | Msa0479030:five_prime_UTR |
| AATTAAAATTAAAACGAGAT+CGG | 0.534507 | 3_3:+83845034 | Msa0479030:five_prime_UTR |
| AGTTTCAACTCATCTTCAAA+TGG | 0.535944 | 3_3:+83845345 | Msa0479030:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 3_3:-83847797 | None:intergenic |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 3_3:-83847729 | None:intergenic |
| AGGTGAAGAGTGGAGGAGAC+GGG | 0.545299 | 3_3:+83846278 | Msa0479030:CDS |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 3_3:+83845201 | Msa0479030:CDS |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 3_3:+83846990 | Msa0479030:CDS |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 3_3:+83846387 | Msa0479030:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 3_3:-83847159 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 3_3:-83846382 | None:intergenic |
| ACGGGTTCATAGTCAAAATG+AGG | 0.561200 | 3_3:+83846296 | Msa0479030:CDS |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 3_3:+83846796 | Msa0479030:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 3_3:+83845051 | Msa0479030:five_prime_UTR |
| GAATGAAGAGAAGAAAGAAG+AGG | 0.566491 | 3_3:-83844925 | None:intergenic |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 3_3:+83847470 | Msa0479030:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 3_3:+83845239 | Msa0479030:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 3_3:-83846775 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 3_3:+83845238 | Msa0479030:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 3_3:+83846777 | Msa0479030:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 3_3:+83847504 | Msa0479030:CDS |
| ATTCCTTCTTGTGTGTGTAA+AGG | 0.594564 | 3_3:-83844895 | None:intergenic |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 3_3:+83847151 | Msa0479030:CDS |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 3_3:+83848031 | Msa0479030:intron |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 3_3:-83846351 | None:intergenic |
| AAGACATACAAACGATTATG+GGG | 0.611378 | 3_3:-83846432 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 3_3:+83846960 | Msa0479030:CDS |
| TTCATAGTCAAAATGAGGGA+TGG | 0.616988 | 3_3:+83846301 | Msa0479030:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 3_3:-83846602 | None:intergenic |
| CGGGTTCATAGTCAAAATGA+GGG | 0.637653 | 3_3:+83846297 | Msa0479030:CDS |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 3_3:+83846271 | Msa0479030:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 3_3:-83847130 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 3_3:+83846394 | Msa0479030:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 3_3:+83848028 | Msa0479030:intron |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 3_3:+83847725 | Msa0479030:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 3_3:+83847786 | Msa0479030:CDS |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 3_3:+83845216 | Msa0479030:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 3_3:+83848032 | Msa0479030:intron |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 3_3:-83847486 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 3_3:-83847137 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 3_3:+83845240 | Msa0479030:CDS |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 3_3:-83847487 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 3_3:+83846390 | Msa0479030:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 3_3:-83846352 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 3_3:+83846340 | Msa0479030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAATAATT+GGG | - | chr3_3:83845792-83845811 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAATAAT+TGG | - | chr3_3:83845793-83845812 | None:intergenic | 0.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | + | chr3_3:83845115-83845134 | Msa0479030:intron | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | - | chr3_3:83845585-83845604 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | - | chr3_3:83845586-83845605 | None:intergenic | 10.0% |
| !! | AATTAAAATTAAAACGAGAT+CGG | + | chr3_3:83845034-83845053 | Msa0479030:five_prime_UTR | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | + | chr3_3:83845125-83845144 | Msa0479030:intron | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | + | chr3_3:83845475-83845494 | Msa0479030:intron | 15.0% |
| !!! | CAGTTACTTTAAAAAAAAAA+TGG | - | chr3_3:83846157-83846176 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | - | chr3_3:83844965-83844984 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | - | chr3_3:83845003-83845022 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | - | chr3_3:83845940-83845959 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | + | chr3_3:83845975-83845994 | Msa0479030:intron | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | - | chr3_3:83846211-83846230 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | + | chr3_3:83846213-83846232 | Msa0479030:intron | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | + | chr3_3:83846502-83846521 | Msa0479030:intron | 20.0% |
| !!! | TTGGATCCTATATATTATTT+TGG | + | chr3_3:83846521-83846540 | Msa0479030:intron | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | - | chr3_3:83846530-83846549 | None:intergenic | 20.0% |
| !!! | ATATTACTTGTTTTTGGTAT+AGG | + | chr3_3:83847076-83847095 | Msa0479030:intron | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | + | chr3_3:83847368-83847387 | Msa0479030:intron | 20.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | + | chr3_3:83845239-83845258 | Msa0479030:CDS | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | + | chr3_3:83845453-83845472 | Msa0479030:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | + | chr3_3:83845848-83845867 | Msa0479030:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | - | chr3_3:83845932-83845951 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | - | chr3_3:83846078-83846097 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | - | chr3_3:83846138-83846157 | None:intergenic | 25.0% |
| !!! | GTGAAAATAAATTTGTTGTG+TGG | + | chr3_3:83846239-83846258 | Msa0479030:intron | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | - | chr3_3:83846436-83846455 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | - | chr3_3:83846437-83846456 | None:intergenic | 25.0% |
| !! | TATCTTCCAATGTAATTTTG+TGG | + | chr3_3:83846554-83846573 | Msa0479030:intron | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | - | chr3_3:83846673-83846692 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | + | chr3_3:83846673-83846692 | Msa0479030:intron | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | - | chr3_3:83846712-83846731 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | - | chr3_3:83846778-83846797 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | + | chr3_3:83846777-83846796 | Msa0479030:CDS | 25.0% |
| ! | ACTACAATACAGTTAAGATT+AGG | - | chr3_3:83846864-83846883 | None:intergenic | 25.0% |
| !!! | CTGACAATATTACTTGTTTT+TGG | + | chr3_3:83847070-83847089 | Msa0479030:intron | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | - | chr3_3:83847413-83847432 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | + | chr3_3:83847412-83847431 | Msa0479030:CDS | 25.0% |
| !!! | GTTTTTGAAGATACATTTCA+AGG | + | chr3_3:83847530-83847549 | Msa0479030:intron | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | - | chr3_3:83847936-83847955 | None:intergenic | 25.0% |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | + | chr3_3:83845134-83845153 | Msa0479030:intron | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | + | chr3_3:83845152-83845171 | Msa0479030:intron | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | + | chr3_3:83845165-83845184 | Msa0479030:CDS | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | + | chr3_3:83845238-83845257 | Msa0479030:CDS | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | + | chr3_3:83845240-83845259 | Msa0479030:CDS | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | - | chr3_3:83845298-83845317 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | - | chr3_3:83845299-83845318 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | - | chr3_3:83845308-83845327 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | + | chr3_3:83845345-83845364 | Msa0479030:CDS | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | + | chr3_3:83845417-83845436 | Msa0479030:CDS | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | - | chr3_3:83845520-83845539 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | - | chr3_3:83845782-83845801 | None:intergenic | 30.0% | |
| ! | ATACTATTGGATTTTACGTC+AGG | - | chr3_3:83845906-83845925 | None:intergenic | 30.0% |
| ! | TTTTATAAGACTAGAAGCCT+TGG | + | chr3_3:83846191-83846210 | Msa0479030:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | - | chr3_3:83846435-83846454 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | - | chr3_3:83846463-83846482 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | - | chr3_3:83846464-83846483 | None:intergenic | 30.0% | |
| GATGAACCACAAAATTACAT+TGG | - | chr3_3:83846563-83846582 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | + | chr3_3:83846574-83846593 | Msa0479030:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | - | chr3_3:83846701-83846720 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | + | chr3_3:83846734-83846753 | Msa0479030:intron | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | - | chr3_3:83846740-83846759 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | + | chr3_3:83846747-83846766 | Msa0479030:intron | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | - | chr3_3:83847048-83847067 | None:intergenic | 30.0% |
| GTAATATTGTCAGACAAATC+TGG | - | chr3_3:83847063-83847082 | None:intergenic | 30.0% | |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | + | chr3_3:83847080-83847099 | Msa0479030:intron | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | - | chr3_3:83847305-83847324 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | + | chr3_3:83847304-83847323 | Msa0479030:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | - | chr3_3:83847316-83847335 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | - | chr3_3:83847505-83847524 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | + | chr3_3:83847504-83847523 | Msa0479030:CDS | 30.0% | |
| AGTATTCATAATCTCTGTTC+TGG | + | chr3_3:83847574-83847593 | Msa0479030:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | + | chr3_3:83847954-83847973 | Msa0479030:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | + | chr3_3:83848053-83848072 | Msa0479030:CDS | 30.0% | |
| ATTCCTTCTTGTGTGTGTAA+AGG | - | chr3_3:83844898-83844917 | None:intergenic | 35.0% | |
| GAATGAAGAGAAGAAAGAAG+AGG | - | chr3_3:83844928-83844947 | None:intergenic | 35.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | + | chr3_3:83845143-83845162 | Msa0479030:intron | 35.0% | |
| GGTATAGTGGTACATACTAT+TGG | - | chr3_3:83845919-83845938 | None:intergenic | 35.0% | |
| AAAATCAAGTTATTGCCCAG+GGG | - | chr3_3:83846051-83846070 | None:intergenic | 35.0% | |
| CAAAATCAAGTTATTGCCCA+GGG | - | chr3_3:83846052-83846071 | None:intergenic | 35.0% | |
| ACAAAATCAAGTTATTGCCC+AGG | - | chr3_3:83846053-83846072 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+CGG | + | chr3_3:83846083-83846102 | Msa0479030:intron | 35.0% | |
| ATATAGTTCAAATTCCACCC+GGG | + | chr3_3:83846084-83846103 | Msa0479030:intron | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | + | chr3_3:83846258-83846277 | Msa0479030:intron | 35.0% |
| TTCATAGTCAAAATGAGGGA+TGG | + | chr3_3:83846301-83846320 | Msa0479030:CDS | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | + | chr3_3:83846469-83846488 | Msa0479030:intron | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | + | chr3_3:83846796-83846815 | Msa0479030:CDS | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | + | chr3_3:83846924-83846943 | Msa0479030:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | + | chr3_3:83846957-83846976 | Msa0479030:CDS | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | - | chr3_3:83847010-83847029 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | - | chr3_3:83847043-83847062 | None:intergenic | 35.0% |
| ATGAATTACCTTGCATCTGA+CGG | - | chr3_3:83847162-83847181 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | - | chr3_3:83847254-83847273 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | + | chr3_3:83847270-83847289 | Msa0479030:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | + | chr3_3:83847288-83847307 | Msa0479030:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | + | chr3_3:83847425-83847444 | Msa0479030:CDS | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | + | chr3_3:83847446-83847465 | Msa0479030:CDS | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | - | chr3_3:83847506-83847525 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | - | chr3_3:83847623-83847642 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | + | chr3_3:83847630-83847649 | Msa0479030:intron | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | + | chr3_3:83847702-83847721 | Msa0479030:intron | 35.0% | |
| CAAGAGTAAAAACACAGGTA+AGG | - | chr3_3:83847841-83847860 | None:intergenic | 35.0% | |
| !! | CTTACCTGTGTTTTTACTCT+TGG | + | chr3_3:83847839-83847858 | Msa0479030:CDS | 35.0% |
| GGGACCAACTTAATCAATTT+AGG | + | chr3_3:83848052-83848071 | Msa0479030:CDS | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | - | chr3_3:83848059-83848078 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | + | chr3_3:83848076-83848095 | Msa0479030:CDS | 35.0% | |
| TCACCTTTACACACACAAGA+AGG | + | chr3_3:83844892-83844911 | Msa0479030:five_prime_UTR | 40.0% | |
| GATCGGTGATTCATCTTACA+AGG | + | chr3_3:83845051-83845070 | Msa0479030:five_prime_UTR | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | + | chr3_3:83845201-83845220 | Msa0479030:CDS | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | - | chr3_3:83845291-83845310 | None:intergenic | 40.0% | |
| AACTCATCTTCAAATGGCAG+TGG | + | chr3_3:83845351-83845370 | Msa0479030:CDS | 40.0% | |
| TTCAAATGGCAGTGGAAGTA+TGG | + | chr3_3:83845359-83845378 | Msa0479030:CDS | 40.0% | |
| ATGCTGCCAAAGTTAGCAAT+CGG | + | chr3_3:83845654-83845673 | Msa0479030:intron | 40.0% | |
| ! | ATCACACCGATTGCTAACTT+TGG | - | chr3_3:83845663-83845682 | None:intergenic | 40.0% |
| ATCGAACTAACTGTAGTGTG+TGG | + | chr3_3:83845681-83845700 | Msa0479030:intron | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | + | chr3_3:83845682-83845701 | Msa0479030:intron | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | - | chr3_3:83846003-83846022 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | - | chr3_3:83846007-83846026 | None:intergenic | 40.0% |
| TATAGTTCAAATTCCACCCG+GGG | + | chr3_3:83846085-83846104 | Msa0479030:intron | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+GGG | - | chr3_3:83846104-83846123 | None:intergenic | 40.0% |
| ! | GATCATTTTACAATAGCCCC+CGG | - | chr3_3:83846105-83846124 | None:intergenic | 40.0% |
| ACGGGTTCATAGTCAAAATG+AGG | + | chr3_3:83846296-83846315 | Msa0479030:CDS | 40.0% | |
| CGGGTTCATAGTCAAAATGA+GGG | + | chr3_3:83846297-83846316 | Msa0479030:CDS | 40.0% | |
| TTCAACACAATTGCAGGATG+TGG | - | chr3_3:83846385-83846404 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | + | chr3_3:83846387-83846406 | Msa0479030:CDS | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | - | chr3_3:83846391-83846410 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | + | chr3_3:83846390-83846409 | Msa0479030:CDS | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | + | chr3_3:83846394-83846413 | Msa0479030:CDS | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | + | chr3_3:83846598-83846617 | Msa0479030:CDS | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | + | chr3_3:83846604-83846623 | Msa0479030:CDS | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | + | chr3_3:83846795-83846814 | Msa0479030:CDS | 40.0% | |
| ! | TAGGAGTATGCAACAGCAAA+GGG | - | chr3_3:83846845-83846864 | None:intergenic | 40.0% |
| ! | TTAGGAGTATGCAACAGCAA+AGG | - | chr3_3:83846846-83846865 | None:intergenic | 40.0% |
| AGTTACTAAGAGAGTTCAGG+AGG | + | chr3_3:83846960-83846979 | Msa0479030:CDS | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | + | chr3_3:83846990-83847009 | Msa0479030:CDS | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | - | chr3_3:83847036-83847055 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | - | chr3_3:83847037-83847056 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | - | chr3_3:83847038-83847057 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | - | chr3_3:83847140-83847159 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | - | chr3_3:83847218-83847237 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | + | chr3_3:83847257-83847276 | Msa0479030:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | - | chr3_3:83847268-83847287 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | + | chr3_3:83847499-83847518 | Msa0479030:CDS | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | + | chr3_3:83847508-83847527 | Msa0479030:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | - | chr3_3:83847720-83847739 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | + | chr3_3:83847725-83847744 | Msa0479030:CDS | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | - | chr3_3:83847732-83847751 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | - | chr3_3:83847745-83847764 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | - | chr3_3:83847800-83847819 | None:intergenic | 40.0% | |
| !! | ACCTGTGTTTTTACTCTTGG+AGG | + | chr3_3:83847842-83847861 | Msa0479030:CDS | 40.0% |
| ACCTCCAAGAGTAAAAACAC+AGG | - | chr3_3:83847846-83847865 | None:intergenic | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | - | chr3_3:83845216-83845235 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | + | chr3_3:83845216-83845235 | Msa0479030:CDS | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | - | chr3_3:83845228-83845247 | None:intergenic | 45.0% |
| TCAGCTTAGTGGCGAGAATA+GGG | + | chr3_3:83845714-83845733 | Msa0479030:intron | 45.0% | |
| ATGTGTATGGTGTACTCCAG+TGG | + | chr3_3:83845861-83845880 | Msa0479030:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | + | chr3_3:83845867-83845886 | Msa0479030:intron | 45.0% | |
| ! | GATTTTACGTCAGGTACTCC+GGG | - | chr3_3:83845897-83845916 | None:intergenic | 45.0% |
| ! | GGATTTTACGTCAGGTACTC+CGG | - | chr3_3:83845898-83845917 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | + | chr3_3:83846016-83846035 | Msa0479030:intron | 45.0% |
| ATAGTTCAAATTCCACCCGG+GGG | + | chr3_3:83846086-83846105 | Msa0479030:intron | 45.0% | |
| TGTGTAGTTGAGGTGAAGAG+TGG | + | chr3_3:83846268-83846287 | Msa0479030:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | + | chr3_3:83846400-83846419 | Msa0479030:CDS | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | - | chr3_3:83846605-83846624 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | - | chr3_3:83847035-83847054 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | - | chr3_3:83847133-83847152 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | + | chr3_3:83847212-83847231 | Msa0479030:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | + | chr3_3:83847248-83847267 | Msa0479030:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | - | chr3_3:83847398-83847417 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | - | chr3_3:83847490-83847509 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | - | chr3_3:83847491-83847510 | None:intergenic | 45.0% |
| ACTCCAACTCAACCTTCTTC+TGG | + | chr3_3:83848170-83848189 | Msa0479030:three_prime_UTR | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | - | chr3_3:83848176-83848195 | None:intergenic | 45.0% | |
| !!! | TTTTAATTTAATTTAACTAT+TGG | - | chr3_3:83845022-83845041 | None:intergenic | 5.0% |
| !! | AAAAATTGAATTAATTAATT+AGG | - | chr3_3:83845090-83845109 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | + | chr3_3:83845689-83845708 | Msa0479030:intron | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | + | chr3_3:83845713-83845732 | Msa0479030:intron | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | + | chr3_3:83845715-83845734 | Msa0479030:intron | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | - | chr3_3:83846023-83846042 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | + | chr3_3:83846021-83846040 | Msa0479030:intron | 50.0% |
| ATCAAGTTATTGCCCAGGGG+CGG | - | chr3_3:83846048-83846067 | None:intergenic | 50.0% | |
| ! | ATTTTACAATAGCCCCCGGG+TGG | - | chr3_3:83846101-83846120 | None:intergenic | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | + | chr3_3:83846271-83846290 | Msa0479030:intron | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | - | chr3_3:83846373-83846392 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | + | chr3_3:83847151-83847170 | Msa0479030:CDS | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | + | chr3_3:83847385-83847404 | Msa0479030:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | - | chr3_3:83847395-83847414 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | + | chr3_3:83847470-83847489 | Msa0479030:CDS | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | - | chr3_3:83847489-83847508 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | + | chr3_3:83848028-83848047 | Msa0479030:intron | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | + | chr3_3:83848031-83848050 | Msa0479030:intron | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | + | chr3_3:83848032-83848051 | Msa0479030:intron | 50.0% |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | + | chr3_3:83845703-83845722 | Msa0479030:intron | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | + | chr3_3:83845718-83845737 | Msa0479030:intron | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | + | chr3_3:83845730-83845749 | Msa0479030:intron | 55.0% | |
| GACCTAGACTAGGCCCATAC+CGG | + | chr3_3:83845740-83845759 | Msa0479030:intron | 55.0% | |
| AGCACTTGCCACACCGGTAT+GGG | - | chr3_3:83845756-83845775 | None:intergenic | 55.0% | |
| TAGCACTTGCCACACCGGTA+TGG | - | chr3_3:83845757-83845776 | None:intergenic | 55.0% | |
| TGGTGTAGCACTTGCCACAC+CGG | - | chr3_3:83845762-83845781 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+CGG | + | chr3_3:83846277-83846296 | Msa0479030:CDS | 55.0% | |
| AGGTGAAGAGTGGAGGAGAC+GGG | + | chr3_3:83846278-83846297 | Msa0479030:CDS | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | + | chr3_3:83846337-83846356 | Msa0479030:CDS | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | + | chr3_3:83846340-83846359 | Msa0479030:CDS | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | - | chr3_3:83846345-83846364 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | - | chr3_3:83846354-83846373 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | + | chr3_3:83846351-83846370 | Msa0479030:CDS | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | - | chr3_3:83846355-83846374 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | + | chr3_3:83847479-83847498 | Msa0479030:CDS | 55.0% | |
| CACCGGTATGGGCCTAGTCT+AGG | - | chr3_3:83845745-83845764 | None:intergenic | 60.0% | |
| AGACTAGGCCCATACCGGTG+TGG | + | chr3_3:83845745-83845764 | Msa0479030:intron | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | + | chr3_3:83845876-83845895 | Msa0479030:intron | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | - | chr3_3:83847031-83847050 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | + | chr3_3:83847786-83847805 | Msa0479030:CDS | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | - | chr3_3:83845880-83845899 | None:intergenic | 65.0% | |
| TTATTGCCCAGGGGCGGACC+TGG | - | chr3_3:83846042-83846061 | None:intergenic | 65.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | + | chr3_3:83846032-83846051 | Msa0479030:intron | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | + | chr3_3:83846033-83846052 | Msa0479030:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83844853 | 83848196 | 83844853 | ID=Msa0479030;Name=Msa0479030 |
| chr3_3 | mRNA | 83844853 | 83848196 | 83844853 | ID=Msa0479030-mRNA-1;Parent=Msa0479030;Name=Msa0479030-mRNA-1;_AED=0.22;_eAED=0.22;_QI=226|0.88|0.9|1|0.77|0.6|10|49|355 |
| chr3_3 | exon | 83844853 | 83845072 | 83844853 | ID=Msa0479030-mRNA-1:exon:23665;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83845156 | 83845438 | 83845156 | ID=Msa0479030-mRNA-1:exon:23666;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83846275 | 83846445 | 83846275 | ID=Msa0479030-mRNA-1:exon:23667;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83846594 | 83846643 | 83846594 | ID=Msa0479030-mRNA-1:exon:23668;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83846769 | 83846825 | 83846769 | ID=Msa0479030-mRNA-1:exon:23669;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83846946 | 83847011 | 83846946 | ID=Msa0479030-mRNA-1:exon:23670;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83847098 | 83847172 | 83847098 | ID=Msa0479030-mRNA-1:exon:23671;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83847407 | 83847525 | 83847407 | ID=Msa0479030-mRNA-1:exon:23672;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83847716 | 83847863 | 83847716 | ID=Msa0479030-mRNA-1:exon:23673;Parent=Msa0479030-mRNA-1 |
| chr3_3 | exon | 83848043 | 83848196 | 83848043 | ID=Msa0479030-mRNA-1:exon:23674;Parent=Msa0479030-mRNA-1 |
| chr3_3 | five_prime_UTR | 83844853 | 83845072 | 83844853 | ID=Msa0479030-mRNA-1:five_prime_utr;Parent=Msa0479030-mRNA-1 |
| chr3_3 | five_prime_UTR | 83845156 | 83845161 | 83845156 | ID=Msa0479030-mRNA-1:five_prime_utr;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83845162 | 83845438 | 83845162 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83846275 | 83846445 | 83846275 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83846594 | 83846643 | 83846594 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83846769 | 83846825 | 83846769 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83846946 | 83847011 | 83846946 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83847098 | 83847172 | 83847098 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83847407 | 83847525 | 83847407 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83847716 | 83847863 | 83847716 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | CDS | 83848043 | 83848147 | 83848043 | ID=Msa0479030-mRNA-1:cds;Parent=Msa0479030-mRNA-1 |
| chr3_3 | three_prime_UTR | 83848148 | 83848196 | 83848148 | ID=Msa0479030-mRNA-1:three_prime_utr;Parent=Msa0479030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
