Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435010 | XP_013462149.1 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435010 | sp|Q9FWS6|BBD1_ARATH | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.28e-152 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435010 | B7FJ72 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0435010 | 0.858228 | 9.515739e-63 | -8.615850e-47 |
| Msa0035400 | Msa0435010 | 0.815972 | 7.029143e-52 | -8.615850e-47 |
| Msa0044180 | Msa0435010 | 0.821708 | 3.496481e-53 | -8.615850e-47 |
| Msa0064550 | Msa0435010 | 0.860916 | 1.479063e-63 | -8.615850e-47 |
| Msa0090860 | Msa0435010 | 0.812527 | 4.053857e-51 | -8.615850e-47 |
| Msa0092960 | Msa0435010 | 0.849258 | 3.629198e-60 | -8.615850e-47 |
| Msa0108070 | Msa0435010 | 0.837106 | 6.321471e-57 | -8.615850e-47 |
| Msa0109490 | Msa0435010 | 0.867289 | 1.527088e-65 | -8.615850e-47 |
| Msa0142420 | Msa0435010 | 0.815487 | 9.014718e-52 | -8.615850e-47 |
| Msa0146680 | Msa0435010 | 0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0154220 | Msa0435010 | 0.801003 | 1.105098e-48 | -8.615850e-47 |
| Msa0154240 | Msa0435010 | 0.826374 | 2.809046e-54 | -8.615850e-47 |
| Msa0154270 | Msa0435010 | 0.883799 | 3.304528e-71 | -8.615850e-47 |
| Msa0155610 | Msa0435010 | 0.826004 | 3.441288e-54 | -8.615850e-47 |
| Msa0178350 | Msa0435010 | 0.806250 | 9.013275e-50 | -8.615850e-47 |
| Msa0183560 | Msa0435010 | 0.821448 | 4.016723e-53 | -8.615850e-47 |
| Msa0198440 | Msa0435010 | 0.824103 | 9.675897e-54 | -8.615850e-47 |
| Msa0376340 | Msa0435010 | 0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0377280 | Msa0435010 | 0.819194 | 1.320260e-52 | -8.615850e-47 |
| Msa0380650 | Msa0435010 | 0.806604 | 7.588201e-50 | -8.615850e-47 |
| Msa0384530 | Msa0435010 | 0.914667 | 1.465058e-84 | -8.615850e-47 |
| Msa0392050 | Msa0435010 | 0.824105 | 9.664601e-54 | -8.615850e-47 |
| Msa0401340 | Msa0435010 | 0.817234 | 3.665109e-52 | -8.615850e-47 |
| Msa0404690 | Msa0435010 | 0.817053 | 4.026287e-52 | -8.615850e-47 |
| Msa0412190 | Msa0435010 | 0.846539 | 2.038484e-59 | -8.615850e-47 |
| Msa0430290 | Msa0435010 | 0.808376 | 3.192613e-50 | -8.615850e-47 |
| Msa0435010 | Msa0448120 | 0.820795 | 5.678432e-53 | -8.615850e-47 |
| Msa0435010 | Msa0462590 | 0.813550 | 2.418477e-51 | -8.615850e-47 |
| Msa0435010 | Msa0469950 | 0.823894 | 1.083140e-53 | -8.615850e-47 |
| Msa0435010 | Msa0476780 | 0.816022 | 6.851244e-52 | -8.615850e-47 |
| Msa0435010 | Msa0479030 | 0.940224 | 3.363840e-100 | -8.615850e-47 |
| Msa0435010 | Msa0479100 | 0.970793 | 3.682987e-132 | -8.615850e-47 |
| Msa0435010 | Msa0479950 | 0.881643 | 2.024781e-70 | -8.615850e-47 |
| Msa0435010 | Msa0516160 | 0.811717 | 6.087003e-51 | -8.615850e-47 |
| Msa0435010 | Msa0521140 | 0.813850 | 2.077108e-51 | -8.615850e-47 |
| Msa0435010 | Msa0525270 | 0.807895 | 4.042855e-50 | -8.615850e-47 |
| Msa0435010 | Msa0525280 | 0.808431 | 3.107520e-50 | -8.615850e-47 |
| Msa0435010 | Msa0530340 | 0.810084 | 1.374289e-50 | -8.615850e-47 |
| Msa0435010 | Msa0530950 | 0.803929 | 2.756838e-49 | -8.615850e-47 |
| Msa0435010 | Msa0549540 | 0.835098 | 2.044781e-56 | -8.615850e-47 |
| Msa0435010 | Msa0556070 | 0.817659 | 2.939718e-52 | -8.615850e-47 |
| Msa0435010 | Msa0593810 | 0.806678 | 7.318979e-50 | -8.615850e-47 |
| Msa0435010 | Msa0604880 | 0.819667 | 1.030004e-52 | -8.615850e-47 |
| Msa0435010 | Msa0605250 | 0.818182 | 2.239639e-52 | -8.615850e-47 |
| Msa0435010 | Msa0627050 | 0.827287 | 1.700828e-54 | -8.615850e-47 |
| Msa0435010 | Msa0629440 | -0.808847 | 2.532457e-50 | -8.615850e-47 |
| Msa0435010 | Msa0646190 | 0.805177 | 1.514263e-49 | -8.615850e-47 |
| Msa0435010 | Msa0649310 | 0.823630 | 1.249298e-53 | -8.615850e-47 |
| Msa0435010 | Msa0651400 | 0.821467 | 3.975086e-53 | -8.615850e-47 |
| Msa0435010 | Msa0662120 | 0.806818 | 6.839287e-50 | -8.615850e-47 |
| Msa0435010 | Msa0667070 | -0.811973 | 5.354756e-51 | -8.615850e-47 |
| Msa0435010 | Msa0675010 | 0.826605 | 2.475276e-54 | -8.615850e-47 |
| Msa0435010 | Msa0693400 | 0.818147 | 2.281083e-52 | -8.615850e-47 |
| Msa0435010 | Msa0705420 | 0.811869 | 5.641682e-51 | -8.615850e-47 |
| Msa0435010 | Msa0709660 | 0.982331 | 8.100941e-155 | -8.615850e-47 |
| Msa0435010 | Msa0723130 | 0.806610 | 7.567250e-50 | -8.615850e-47 |
| Msa0435010 | Msa0740210 | 0.841637 | 4.211293e-58 | -8.615850e-47 |
| Msa0435010 | Msa0749150 | 0.819089 | 1.394875e-52 | -8.615850e-47 |
| Msa0435010 | Msa0772500 | 0.809589 | 1.756047e-50 | -8.615850e-47 |
| Msa0435010 | Msa0781390 | 0.844158 | 8.989858e-59 | -8.615850e-47 |
| Msa0435010 | Msa0788360 | 0.800858 | 1.183486e-48 | -8.615850e-47 |
| Msa0435010 | Msa0792880 | 0.824748 | 6.823273e-54 | -8.615850e-47 |
| Msa0435010 | Msa0798460 | 0.804948 | 1.690618e-49 | -8.615850e-47 |
| Msa0435010 | Msa0801360 | 0.824335 | 8.534437e-54 | -8.615850e-47 |
| Msa0435010 | Msa0820520 | 0.831299 | 1.805702e-55 | -8.615850e-47 |
| Msa0435010 | Msa0828570 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0435010 | Msa0828900 | 0.822762 | 1.991867e-53 | -8.615850e-47 |
| Msa0435010 | Msa0829060 | 0.809667 | 1.689440e-50 | -8.615850e-47 |
| Msa0435010 | Msa0839830 | 0.825038 | 5.829066e-54 | -8.615850e-47 |
| Msa0435010 | Msa0860920 | 0.860453 | 2.043455e-63 | -8.615850e-47 |
| Msa0435010 | Msa0899700 | 0.807115 | 5.918758e-50 | -8.615850e-47 |
| Msa0435010 | Msa0938420 | 0.807341 | 5.300499e-50 | -8.615850e-47 |
| Msa0435010 | Msa0964680 | 0.806250 | 9.009789e-50 | -8.615850e-47 |
| Msa0435010 | Msa0968780 | 0.806790 | 6.930621e-50 | -8.615850e-47 |
| Msa0435010 | Msa0984000 | 0.863827 | 1.884588e-64 | -8.615850e-47 |
| Msa0435010 | Msa1137940 | 0.825210 | 5.306463e-54 | -8.615850e-47 |
| Msa0435010 | Msa1144730 | 0.824411 | 8.189379e-54 | -8.615850e-47 |
| Msa0435010 | Msa1173380 | 0.817421 | 3.326787e-52 | -8.615850e-47 |
| Msa0435010 | Msa1180050 | 0.853353 | 2.527826e-61 | -8.615850e-47 |
| Msa0435010 | Msa1182800 | 0.815820 | 7.598660e-52 | -8.615850e-47 |
| Msa0435010 | Msa1182830 | 0.808230 | 3.429829e-50 | -8.615850e-47 |
| Msa0435010 | Msa1198720 | 0.821827 | 3.282224e-53 | -8.615850e-47 |
| Msa0435010 | Msa1232270 | 0.868007 | 8.989357e-66 | -8.615850e-47 |
| Msa0435010 | Msa1241820 | 0.823655 | 1.232550e-53 | -8.615850e-47 |
| Msa0435010 | Msa1252300 | 0.841521 | 4.517707e-58 | -8.615850e-47 |
| Msa0435010 | Msa1270770 | 0.849760 | 2.629851e-60 | -8.615850e-47 |
| Msa0435010 | Msa1313050 | 0.858452 | 8.158450e-63 | -8.615850e-47 |
| Msa0435010 | Msa1326400 | 0.814737 | 1.322577e-51 | -8.615850e-47 |
| Msa0435010 | Msa1349810 | 0.816724 | 4.770967e-52 | -8.615850e-47 |
| Msa0435010 | Msa1354090 | 0.873087 | 1.928996e-67 | -8.615850e-47 |
| Msa0435010 | Msa1358340 | 0.816034 | 6.809652e-52 | -8.615850e-47 |
| Msa0435010 | Msa1359890 | 0.803521 | 3.350801e-49 | -8.615850e-47 |
| Msa0435010 | Msa1391490 | 0.811930 | 5.470818e-51 | -8.615850e-47 |
| Msa0435010 | Msa1394900 | 0.819044 | 1.428121e-52 | -8.615850e-47 |
| Msa0435010 | Msa1398800 | 0.812665 | 3.782297e-51 | -8.615850e-47 |
| Msa0435010 | Msa1419970 | 0.800932 | 1.142681e-48 | -8.615850e-47 |
| Msa0435010 | Msa1434660 | 0.852215 | 5.341805e-61 | -8.615850e-47 |
| Msa0245870 | Msa0435010 | 0.801515 | 8.682146e-49 | -8.615850e-47 |
| Msa0278670 | Msa0435010 | 0.821599 | 3.705844e-53 | -8.615850e-47 |
| Msa0304110 | Msa0435010 | 0.801244 | 9.867107e-49 | -8.615850e-47 |
| Msa0318070 | Msa0435010 | 0.826553 | 2.547353e-54 | -8.615850e-47 |
| Msa0344680 | Msa0435010 | 0.827057 | 1.930751e-54 | -8.615850e-47 |
| Msa0358290 | Msa0435010 | 0.804179 | 2.446298e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435010 | MtrunA17_Chr3g0141831 | 99.010 | 303 | 3 | 0 | 1 | 303 | 1 | 303 | 0.0 | 627 |
| Msa0435010 | MtrunA17_Chr1g0155531 | 69.903 | 309 | 81 | 2 | 4 | 303 | 1 | 306 | 1.64e-158 | 447 |
| Msa0435010 | MtrunA17_Chr5g0406211 | 36.000 | 175 | 105 | 4 | 131 | 303 | 141 | 310 | 1.81e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435010 | AT1G75380.3 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0435010 | AT1G75380.1 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0435010 | AT1G75380.4 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0435010 | AT1G75380.2 | 69.180 | 305 | 82 | 3 | 10 | 303 | 3 | 306 | 7.40e-153 | 433 |
| Msa0435010 | AT1G19660.3 | 69.625 | 293 | 87 | 2 | 29 | 320 | 36 | 327 | 2.71e-150 | 427 |
| Msa0435010 | AT1G19660.2 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0435010 | AT1G19660.1 | 72.826 | 276 | 73 | 2 | 29 | 303 | 36 | 310 | 1.72e-149 | 424 |
| Msa0435010 | AT5G66050.2 | 36.364 | 176 | 104 | 4 | 130 | 303 | 49 | 218 | 2.75e-22 | 94.7 |
| Msa0435010 | AT5G66050.3 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.45e-22 | 95.5 |
| Msa0435010 | AT5G66050.1 | 36.364 | 176 | 104 | 4 | 130 | 303 | 143 | 312 | 5.98e-22 | 95.5 |
| Msa0435010 | AT5G66050.4 | 35.294 | 170 | 102 | 4 | 130 | 297 | 143 | 306 | 3.10e-19 | 87.8 |
Find 93 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACCAACTTAATCAATTT+AGG | 0.211918 | 3_2:-88013972 | Msa0435010:CDS |
| TATACAAGTCAACAAGTATT+TGG | 0.238673 | 3_2:-88014618 | Msa0435010:CDS |
| AAAAGACATACAAACGATTA+TGG | 0.245394 | 3_2:+88015596 | None:intergenic |
| ACATGGCAAGAAAGGGAATT+AGG | 0.247322 | 3_2:+88016742 | None:intergenic |
| ATTTAATTTAATTTAACTAT+TGG | 0.308594 | 3_2:+88017011 | None:intergenic |
| ACTCCAACTCAACCTTCTTC+TGG | 0.311094 | 3_2:-88013854 | Msa0435010:three_prime_UTR |
| GTAGGTTTGAATGGATAAAA+TGG | 0.329200 | 3_2:-88016878 | Msa0435010:intron |
| CGATCCAGTTCAGTAAATAA+TGG | 0.329877 | 3_2:+88014527 | None:intergenic |
| TCCATCTTCAACACAATTGC+AGG | 0.355266 | 3_2:+88015642 | None:intergenic |
| GGACCAACTTAATCAATTTA+GGG | 0.364117 | 3_2:-88013971 | Msa0435010:CDS |
| GTCCTCCATGAGGGCTGTTA+TGG | 0.367780 | 3_2:+88015688 | None:intergenic |
| CCCTCATGGAGGACTTCTTC+CGG | 0.368244 | 3_2:-88015679 | Msa0435010:CDS |
| TTCAAATGGTAGTGGAAGTA+TGG | 0.371169 | 3_2:-88016671 | Msa0435010:CDS |
| TGGCCCATTATTTACTGAAC+TGG | 0.375188 | 3_2:-88014531 | Msa0435010:CDS |
| GAGGTGAAGAGTGGAGGAGA+TGG | 0.376747 | 3_2:-88015753 | Msa0435010:CDS |
| TCATATTTACATGGCAAGAA+AGG | 0.393581 | 3_2:+88016734 | None:intergenic |
| TTTGGTTGTGTAGGTTTGAA+TGG | 0.399839 | 3_2:-88016887 | Msa0435010:intron |
| CAGAAAAGAAAGCGAATAAC+AGG | 0.401391 | 3_2:-88013948 | Msa0435010:CDS |
| TCAACACAAGGCTTACCATT+TGG | 0.407225 | 3_2:+88014307 | None:intergenic |
| AAAGACATACAAACGATTAT+GGG | 0.408082 | 3_2:+88015597 | None:intergenic |
| AAATACTTGTTGACTTGTAT+AGG | 0.410743 | 3_2:+88014620 | None:intergenic |
| AAGAGTTACTAAGAGAGTTC+AGG | 0.417338 | 3_2:-88015073 | Msa0435010:CDS |
| GCGTTGATTGGTCCAATCAT+AGG | 0.427412 | 3_2:+88016817 | None:intergenic |
| GATGCCAAGTGTCTTGTTAA+TGG | 0.431725 | 3_2:-88015432 | Msa0435010:CDS |
| CTACTACAACCAGCGTTGAT+TGG | 0.432408 | 3_2:+88016805 | None:intergenic |
| GGAATGAGAGTAATTGAATC+AGG | 0.437048 | 3_2:-88014584 | Msa0435010:CDS |
| CTGCCCTAAATTGATTAAGT+TGG | 0.437910 | 3_2:+88013968 | None:intergenic |
| GATCCAGTTCAGTAAATAAT+GGG | 0.438185 | 3_2:+88014528 | None:intergenic |
| TTCTTGTTTGTGTAATGTAA+AGG | 0.455596 | 3_2:+88017136 | None:intergenic |
| GCAGGATGTGGTGCATAATC+CGG | 0.457419 | 3_2:+88015660 | None:intergenic |
| AGGTGAAGAGTGGAGGAGAT+GGG | 0.465253 | 3_2:-88015752 | Msa0435010:CDS |
| TGACTTATTTGCAGACCAAA+TGG | 0.466130 | 3_2:-88014322 | Msa0435010:intron |
| GAAGGAGATGATTGACAAGA+TGG | 0.467393 | 3_2:-88015235 | Msa0435010:CDS |
| AACTCATCTTCAAATGGTAG+TGG | 0.476288 | 3_2:-88016679 | Msa0435010:CDS |
| TTGGTACATAATAATAAGAA+TGG | 0.481356 | 3_2:+88017030 | None:intergenic |
| CATATTTACATGGCAAGAAA+GGG | 0.486267 | 3_2:+88016735 | None:intergenic |
| TGCACTTTCTCATATTTACA+TGG | 0.491468 | 3_2:+88016725 | None:intergenic |
| AATTCTACTATTCTTGAAGC+AGG | 0.491817 | 3_2:-88016613 | Msa0435010:intron |
| AAATAGAGAAAATTAAGATC+TGG | 0.494243 | 3_2:+88017068 | None:intergenic |
| TGTGTAGTTGAGGTGAAGAG+TGG | 0.494302 | 3_2:-88015762 | Msa0435010:intron |
| TTGAAGATGGAGGATGGAAC+TGG | 0.494500 | 3_2:-88015630 | Msa0435010:CDS |
| AGACCAGAAGAAGGTTGAGT+TGG | 0.494507 | 3_2:+88013851 | None:intergenic |
| GATAAAATGGTTTGTGTGAA+AGG | 0.496281 | 3_2:-88016865 | Msa0435010:CDS |
| ACTCAGTCCCCTGGTTCAGA+TGG | 0.500433 | 3_2:-88014551 | Msa0435010:CDS |
| AAGTATTTGGCTTACAGTGA+TGG | 0.500663 | 3_2:-88014605 | Msa0435010:CDS |
| AAGTGTCTTGTTAATGGCAG+CGG | 0.507255 | 3_2:-88015426 | Msa0435010:CDS |
| TGCGTCCATAACAGCCCTCA+TGG | 0.507711 | 3_2:-88015693 | Msa0435010:CDS |
| AATAATGGGCCATCTGAACC+AGG | 0.513864 | 3_2:+88014542 | None:intergenic |
| GTGCAAAAGATTGAACTCCT+TGG | 0.528331 | 3_2:+88014282 | None:intergenic |
| AAAGAAAAGAGACCAGAAGA+AGG | 0.530876 | 3_2:+88013842 | None:intergenic |
| AGTTTCAACTCATCTTCAAA+TGG | 0.531934 | 3_2:-88016685 | Msa0435010:CDS |
| CAAAACTATTACCAGCGTCT+TGG | 0.537387 | 3_2:+88014227 | None:intergenic |
| AACTCCTTGGTTTCAACACA+AGG | 0.539583 | 3_2:+88014295 | None:intergenic |
| AGTGTTGCTATGCCTATGAT+TGG | 0.546554 | 3_2:-88016829 | Msa0435010:CDS |
| TTTACATTACACAAACAAGA+AGG | 0.551341 | 3_2:-88017134 | Msa0435010:five_prime_UTR |
| ATGGGTTCATAGTCAAAATG+AGG | 0.552865 | 3_2:-88015734 | Msa0435010:CDS |
| AAATTAAATTAAAACGAGAT+CGG | 0.553672 | 3_2:-88016992 | Msa0435010:five_prime_UTR |
| TGCTCAGCTATATCTTTCCA+AGG | 0.554143 | 3_2:-88015040 | Msa0435010:intron |
| TCCTGCAATTGTGTTGAAGA+TGG | 0.554227 | 3_2:-88015643 | Msa0435010:CDS |
| ATGAATTACCTTGCATCTGA+CGG | 0.554836 | 3_2:+88014871 | None:intergenic |
| TTCAACACAATTGCAGGATG+TGG | 0.559028 | 3_2:+88015648 | None:intergenic |
| AAGGAGATGATTGACAAGAT+GGG | 0.563238 | 3_2:-88015234 | Msa0435010:CDS |
| GATCGGTGATTCATCTTACA+AGG | 0.563496 | 3_2:-88016975 | Msa0435010:intron |
| AAATGAAGAGAAGAAAGAAG+AGG | 0.566491 | 3_2:+88017101 | None:intergenic |
| AAACTGTCAACTCAGTCCCC+TGG | 0.581648 | 3_2:-88014560 | Msa0435010:CDS |
| TTGTAGTAGAATTGAATTGT+GGG | 0.582297 | 3_2:-88016791 | Msa0435010:CDS |
| TTCACTACTTGATATAAAGT+AGG | 0.583362 | 3_2:+88015255 | None:intergenic |
| GTTGTAGTAGAATTGAATTG+TGG | 0.585443 | 3_2:-88016792 | Msa0435010:CDS |
| TACTTTATATCAAGTAGTGA+AGG | 0.586601 | 3_2:-88015253 | Msa0435010:CDS |
| CATTATTTACTGAACTGGAT+CGG | 0.591707 | 3_2:-88014526 | Msa0435010:intron |
| CAACATTGCCGTCAGATGCA+AGG | 0.598286 | 3_2:-88014879 | Msa0435010:intron |
| ATGCAACTCTAGCTCTGTGG+AGG | 0.600499 | 3_2:-88013993 | Msa0435010:intron |
| TTCATAGTCAAAATGAGGGA+TGG | 0.606214 | 3_2:-88015729 | Msa0435010:CDS |
| CCGGAAGAAGTCCTCCATGA+GGG | 0.609077 | 3_2:+88015679 | None:intergenic |
| AAGACATACAAACGATTATG+GGG | 0.611378 | 3_2:+88015598 | None:intergenic |
| AGTTACTAAGAGAGTTCAGG+AGG | 0.616947 | 3_2:-88015070 | Msa0435010:CDS |
| GCTGCCATTAACAAGACACT+TGG | 0.631772 | 3_2:+88015428 | None:intergenic |
| GTAGTTGAGGTGAAGAGTGG+AGG | 0.641244 | 3_2:-88015759 | Msa0435010:intron |
| TGATAGCATCTGAAGGTCGA+AGG | 0.644393 | 3_2:+88014900 | None:intergenic |
| ATTGTGTTGAAGATGGAGGA+TGG | 0.647763 | 3_2:-88015636 | Msa0435010:CDS |
| TGGGTTCATAGTCAAAATGA+GGG | 0.648695 | 3_2:-88015733 | Msa0435010:CDS |
| CTGATGCAACTCTAGCTCTG+TGG | 0.654401 | 3_2:-88013996 | Msa0435010:intron |
| TAAGCCTTGTGTTGAAACCA+AGG | 0.655141 | 3_2:-88014299 | Msa0435010:CDS |
| GAAGAGCGCTACCAAGACGC+TGG | 0.659837 | 3_2:-88014238 | Msa0435010:CDS |
| ATGATTGGACCAATCAACGC+TGG | 0.660475 | 3_2:-88016814 | Msa0435010:CDS |
| TGCAACTCTAGCTCTGTGGA+GGG | 0.660642 | 3_2:-88013992 | Msa0435010:intron |
| TAATGGGCCATCTGAACCAG+GGG | 0.661956 | 3_2:+88014544 | None:intergenic |
| GCAATGTTGATAGCATCTGA+AGG | 0.668734 | 3_2:+88014893 | None:intergenic |
| TGTAGTAGAATTGAATTGTG+GGG | 0.671461 | 3_2:-88016790 | Msa0435010:CDS |
| ATAATGGGCCATCTGAACCA+GGG | 0.677787 | 3_2:+88014543 | None:intergenic |
| TGCAATTGTGTTGAAGATGG+AGG | 0.695717 | 3_2:-88015640 | Msa0435010:CDS |
| TCCGGAAGAAGTCCTCCATG+AGG | 0.699210 | 3_2:+88015678 | None:intergenic |
| GTCCATAACAGCCCTCATGG+AGG | 0.747707 | 3_2:-88015690 | Msa0435010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATAAATAATT+GGG | + | chr3_2:88014793-88014812 | None:intergenic | 0.0% |
| !! | AATAAAATAAAATAAATAAT+TGG | + | chr3_2:88014794-88014813 | None:intergenic | 0.0% |
| !! | TCATAAAAATTGAATTAATT+AGG | + | chr3_2:88014092-88014111 | None:intergenic | 10.0% |
| !!! | TTAATAACTAATTTGAAATT+AGG | - | chr3_2:88014113-88014132 | Msa0435010:intron | 10.0% |
| !!! | TGAAAATAAAATAGTTTTAT+GGG | + | chr3_2:88014583-88014602 | None:intergenic | 10.0% |
| !!! | ATGAAAATAAAATAGTTTTA+TGG | + | chr3_2:88014584-88014603 | None:intergenic | 10.0% |
| !! | AAATTAAATTAAAACGAGAT+CGG | - | chr3_2:88014036-88014055 | Msa0435010:intron | 15.0% |
| !!! | ATTTGAAATTAGGTTAATTT+TGG | - | chr3_2:88014123-88014142 | Msa0435010:intron | 15.0% |
| !!! | GTGAAAAATTGTTTTTTTAT+TGG | - | chr3_2:88014473-88014492 | Msa0435010:intron | 15.0% |
| !!! | ACAGTTACTTTAAAAAAAAA+TGG | + | chr3_2:88015158-88015177 | None:intergenic | 15.0% |
| !! | AAATAGAGAAAATTAAGATC+TGG | + | chr3_2:88013963-88013982 | None:intergenic | 20.0% |
| !! | TTGGTACATAATAATAAGAA+TGG | + | chr3_2:88014001-88014020 | None:intergenic | 20.0% |
| !! | ATTACTCATAAAAAAGTTGT+AGG | + | chr3_2:88014941-88014960 | None:intergenic | 20.0% |
| !! | TATCTATACACTAAAGAAAT+TGG | - | chr3_2:88014976-88014995 | Msa0435010:intron | 20.0% |
| !! | AGAGTAAAATAAAATTTCCA+AGG | + | chr3_2:88015211-88015230 | None:intergenic | 20.0% |
| !!! | GAAATTTTATTTTACTCTCA+TGG | - | chr3_2:88015213-88015232 | Msa0435010:intron | 20.0% |
| !!! | TTGTGAAAATAAATTTGTTG+TGG | - | chr3_2:88015237-88015256 | Msa0435010:CDS | 20.0% |
| !!! | TATCATACAAGTTTACTTTT+TGG | - | chr3_2:88015500-88015519 | Msa0435010:intron | 20.0% |
| !!! | TTGGATCCTATATATTATTT+TGG | - | chr3_2:88015519-88015538 | Msa0435010:intron | 20.0% |
| !! | TCATCACCAAAATAATATAT+AGG | + | chr3_2:88015528-88015547 | None:intergenic | 20.0% |
| !! | ACTACAATACAATTAAGATT+AGG | + | chr3_2:88015862-88015881 | None:intergenic | 20.0% |
| !! | TTGTTTATCAAAGATTTAAC+TGG | - | chr3_2:88016366-88016385 | Msa0435010:intron | 20.0% |
| !! | TTCTTGTTTGTGTAATGTAA+AGG | + | chr3_2:88013895-88013914 | None:intergenic | 25.0% |
| ! | TTTACATTACACAAACAAGA+AGG | - | chr3_2:88013894-88013913 | Msa0435010:exon | 25.0% |
| ! | TTGTAGTAGAATTGAATTGT+GGG | - | chr3_2:88014237-88014256 | Msa0435010:CDS | 25.0% |
| ! | TCATATATGCTTAGTTTAGT+TGG | - | chr3_2:88014451-88014470 | Msa0435010:intron | 25.0% |
| ! | GTAAATTAATCACATGTGTA+TGG | - | chr3_2:88014849-88014868 | Msa0435010:intron | 25.0% |
| ! | TAAAAAAGTTGTAGGTATAG+TGG | + | chr3_2:88014933-88014952 | None:intergenic | 25.0% |
| ! | AATTTGAACTATATCACTTG+AGG | + | chr3_2:88015079-88015098 | None:intergenic | 25.0% |
| ! | ATGGAGAATCAATAAAACAA+CGG | + | chr3_2:88015139-88015158 | None:intergenic | 25.0% |
| ! | AAAGACATACAAACGATTAT+GGG | + | chr3_2:88015434-88015453 | None:intergenic | 25.0% |
| ! | AAAAGACATACAAACGATTA+TGG | + | chr3_2:88015435-88015454 | None:intergenic | 25.0% |
| !! | ACATTTTACTACTAATGCAA+TGG | + | chr3_2:88015671-88015690 | None:intergenic | 25.0% |
| ! | TTGCATTAGTAGTAAAATGT+TGG | - | chr3_2:88015671-88015690 | Msa0435010:CDS | 25.0% |
| ! | GAGAATATGTTACAGAAAAA+CGG | + | chr3_2:88015710-88015729 | None:intergenic | 25.0% |
| ! | TTCACTACTTGATATAAAGT+AGG | + | chr3_2:88015776-88015795 | None:intergenic | 25.0% |
| ! | TACTTTATATCAAGTAGTGA+AGG | - | chr3_2:88015775-88015794 | Msa0435010:intron | 25.0% |
| !!! | GTATTACTTGTTTTTGGTAT+AGG | - | chr3_2:88016074-88016093 | Msa0435010:intron | 25.0% |
| !!! | AAATACTTGTTGACTTGTAT+AGG | + | chr3_2:88016411-88016430 | None:intergenic | 25.0% |
| ! | TATACAAGTCAACAAGTATT+TGG | - | chr3_2:88016410-88016429 | Msa0435010:intron | 25.0% |
| !!! | GTTTTTGAAGATACATTTCA+AGG | - | chr3_2:88016528-88016547 | Msa0435010:intron | 25.0% |
| ! | GAAAATCAATAATGATTAGC+AGG | + | chr3_2:88016940-88016959 | None:intergenic | 25.0% |
| AAATGAAGAGAAGAAAGAAG+AGG | + | chr3_2:88013930-88013949 | None:intergenic | 30.0% | |
| !!! | TAGGTTAATTTTGGTTGTGT+AGG | - | chr3_2:88014132-88014151 | Msa0435010:intron | 30.0% |
| GTAGGTTTGAATGGATAAAA+TGG | - | chr3_2:88014150-88014169 | Msa0435010:intron | 30.0% | |
| ! | GATAAAATGGTTTGTGTGAA+AGG | - | chr3_2:88014163-88014182 | Msa0435010:intron | 30.0% |
| GTTGTAGTAGAATTGAATTG+TGG | - | chr3_2:88014236-88014255 | Msa0435010:CDS | 30.0% | |
| TGTAGTAGAATTGAATTGTG+GGG | - | chr3_2:88014238-88014257 | Msa0435010:CDS | 30.0% | |
| CATATTTACATGGCAAGAAA+GGG | + | chr3_2:88014296-88014315 | None:intergenic | 30.0% | |
| TCATATTTACATGGCAAGAA+AGG | + | chr3_2:88014297-88014316 | None:intergenic | 30.0% | |
| TGCACTTTCTCATATTTACA+TGG | + | chr3_2:88014306-88014325 | None:intergenic | 30.0% | |
| AGTTTCAACTCATCTTCAAA+TGG | - | chr3_2:88014343-88014362 | Msa0435010:intron | 30.0% | |
| AATTCTACTATTCTTGAAGC+AGG | - | chr3_2:88014415-88014434 | Msa0435010:intron | 30.0% | |
| ACACTAATTACTAACTCATG+CGG | + | chr3_2:88014518-88014537 | None:intergenic | 30.0% | |
| ATAAATAATTGGGTCTGTAC+TGG | + | chr3_2:88014783-88014802 | None:intergenic | 30.0% | |
| ! | ATACTATTGGATTTTACGTC+AGG | + | chr3_2:88014907-88014926 | None:intergenic | 30.0% |
| ATATAGTTCAAATTCCACCT+GGG | - | chr3_2:88015085-88015104 | Msa0435010:CDS | 30.0% | |
| ! | TTTTATAAGACTAGAAGCCT+TGG | - | chr3_2:88015191-88015210 | Msa0435010:intron | 30.0% |
| AAGACATACAAACGATTATG+GGG | + | chr3_2:88015433-88015452 | None:intergenic | 30.0% | |
| TTCATGATGCAACATAGAAA+GGG | + | chr3_2:88015461-88015480 | None:intergenic | 30.0% | |
| ATTCATGATGCAACATAGAA+AGG | + | chr3_2:88015462-88015481 | None:intergenic | 30.0% | |
| ! | TCTCTTCCAATGTAATTTTG+TGG | - | chr3_2:88015552-88015571 | Msa0435010:intron | 30.0% |
| GATGAACCACAAAATTACAT+TGG | + | chr3_2:88015561-88015580 | None:intergenic | 30.0% | |
| ! | TGGTTCATCTTTATTTGTAG+TGG | - | chr3_2:88015572-88015591 | Msa0435010:intron | 30.0% |
| ! | ACAGAAAAACGGAATCATTT+TGG | + | chr3_2:88015699-88015718 | None:intergenic | 30.0% |
| GAACCAAACAACTAACTATA+TGG | - | chr3_2:88015732-88015751 | Msa0435010:CDS | 30.0% | |
| CAACCATATAGTTAGTTGTT+TGG | + | chr3_2:88015738-88015757 | None:intergenic | 30.0% | |
| ! | AACTATATGGTTGATGTAAC+AGG | - | chr3_2:88015745-88015764 | Msa0435010:CDS | 30.0% |
| !! | AAATCTGGTTTCTTTTTGTG+TGG | + | chr3_2:88016046-88016065 | None:intergenic | 30.0% |
| !! | CTGACAGTATTACTTGTTTT+TGG | - | chr3_2:88016068-88016087 | Msa0435010:intron | 30.0% |
| !!! | TACTTGTTTTTGGTATAGGT+TGG | - | chr3_2:88016078-88016097 | Msa0435010:intron | 30.0% |
| AAAACTTCTAGGTTCCATTT+AGG | + | chr3_2:88016303-88016322 | None:intergenic | 30.0% | |
| ! | TAAATGGAACCTAGAAGTTT+TGG | - | chr3_2:88016302-88016321 | Msa0435010:intron | 30.0% |
| GAATTTGATCCAAAACTTCT+AGG | + | chr3_2:88016314-88016333 | None:intergenic | 30.0% | |
| GATCCAGTTCAGTAAATAAT+GGG | + | chr3_2:88016503-88016522 | None:intergenic | 30.0% | |
| CATTATTTACTGAACTGGAT+CGG | - | chr3_2:88016502-88016521 | Msa0435010:intron | 30.0% | |
| AGTATTCATAATCTCTGTTC+TGG | - | chr3_2:88016572-88016591 | Msa0435010:intron | 30.0% | |
| TCACAAGATTACATTTCTTG+TGG | - | chr3_2:88016958-88016977 | Msa0435010:intron | 30.0% | |
| GGACCAACTTAATCAATTTA+GGG | - | chr3_2:88017057-88017076 | Msa0435010:five_prime_UTR | 30.0% | |
| TTTGGTTGTGTAGGTTTGAA+TGG | - | chr3_2:88014141-88014160 | Msa0435010:intron | 35.0% | |
| AACTCATCTTCAAATGGTAG+TGG | - | chr3_2:88014349-88014368 | Msa0435010:intron | 35.0% | |
| !! | TTCAAATGGTAGTGGAAGTA+TGG | - | chr3_2:88014357-88014376 | Msa0435010:intron | 35.0% |
| GGTATAGTGGTACATACTAT+TGG | + | chr3_2:88014920-88014939 | None:intergenic | 35.0% | |
| GATATAGTTCAAATTCCACC+TGG | - | chr3_2:88015084-88015103 | Msa0435010:CDS | 35.0% | |
| TATAGTTCAAATTCCACCTG+GGG | - | chr3_2:88015086-88015105 | Msa0435010:CDS | 35.0% | |
| ! | GTGGTTTTTATGTGTAGTTG+AGG | - | chr3_2:88015256-88015275 | Msa0435010:CDS | 35.0% |
| ATGGGTTCATAGTCAAAATG+AGG | - | chr3_2:88015294-88015313 | Msa0435010:intron | 35.0% | |
| TGGGTTCATAGTCAAAATGA+GGG | - | chr3_2:88015295-88015314 | Msa0435010:intron | 35.0% | |
| TTCATAGTCAAAATGAGGGA+TGG | - | chr3_2:88015299-88015318 | Msa0435010:intron | 35.0% | |
| TGTTGCATCATGAATCTCTA+TGG | - | chr3_2:88015467-88015486 | Msa0435010:intron | 35.0% | |
| AAGGAGATGATTGACAAGAT+GGG | - | chr3_2:88015794-88015813 | Msa0435010:intron | 35.0% | |
| TAGGAATATGCAACAGCAAA+GGG | + | chr3_2:88015843-88015862 | None:intergenic | 35.0% | |
| TTAGGAATATGCAACAGCAA+AGG | + | chr3_2:88015844-88015863 | None:intergenic | 35.0% | |
| ACAATATATCTTTCGTGTGC+AGG | - | chr3_2:88015922-88015941 | Msa0435010:intron | 35.0% | |
| AAGAGTTACTAAGAGAGTTC+AGG | - | chr3_2:88015955-88015974 | Msa0435010:intron | 35.0% | |
| ! | GGAAAGTATGAACTTTACCT+TGG | + | chr3_2:88016008-88016027 | None:intergenic | 35.0% |
| ! | TGGTTTCTTTTTGTGTGGTT+TGG | + | chr3_2:88016041-88016060 | None:intergenic | 35.0% |
| GTAATACTGTCAGACAAATC+TGG | + | chr3_2:88016061-88016080 | None:intergenic | 35.0% | |
| ATGAATTACCTTGCATCTGA+CGG | + | chr3_2:88016160-88016179 | None:intergenic | 35.0% | |
| AATCCAAGGAATGTGAAACT+TGG | + | chr3_2:88016252-88016271 | None:intergenic | 35.0% | |
| ! | GATTCACTGGTACAAAGTTT+TGG | - | chr3_2:88016268-88016287 | Msa0435010:intron | 35.0% |
| TTTGGCAAATGTTGCCTAAA+TGG | - | chr3_2:88016286-88016305 | Msa0435010:intron | 35.0% | |
| ! | AAGTATTTGGCTTACAGTGA+TGG | - | chr3_2:88016423-88016442 | Msa0435010:intron | 35.0% |
| GGAATGAGAGTAATTGAATC+AGG | - | chr3_2:88016444-88016463 | Msa0435010:intron | 35.0% | |
| CGATCCAGTTCAGTAAATAA+TGG | + | chr3_2:88016504-88016523 | None:intergenic | 35.0% | |
| AGATTCGAAGATATCTTTCG+AGG | + | chr3_2:88016621-88016640 | None:intergenic | 35.0% | |
| TATCTTCGAATCTGTCTCAT+TGG | - | chr3_2:88016628-88016647 | Msa0435010:CDS | 35.0% | |
| TGACTTATTTGCAGACCAAA+TGG | - | chr3_2:88016706-88016725 | Msa0435010:CDS | 35.0% | |
| CAAGAGTAAAAACACAGGTA+AGG | + | chr3_2:88016845-88016864 | None:intergenic | 35.0% | |
| !! | CTTACCTGTGTTTTTACTCT+TGG | - | chr3_2:88016843-88016862 | Msa0435010:CDS | 35.0% |
| GGGACCAACTTAATCAATTT+AGG | - | chr3_2:88017056-88017075 | Msa0435010:five_prime_UTR | 35.0% | |
| CTGCCCTAAATTGATTAAGT+TGG | + | chr3_2:88017063-88017082 | None:intergenic | 35.0% | |
| CAGAAAAGAAAGCGAATAAC+AGG | - | chr3_2:88017080-88017099 | Msa0435010:five_prime_UTR | 35.0% | |
| GATCGGTGATTCATCTTACA+AGG | - | chr3_2:88014053-88014072 | Msa0435010:intron | 40.0% | |
| ! | AGTGTTGCTATGCCTATGAT+TGG | - | chr3_2:88014199-88014218 | Msa0435010:CDS | 40.0% |
| ACATGGCAAGAAAGGGAATT+AGG | + | chr3_2:88014289-88014308 | None:intergenic | 40.0% | |
| ATGCTGCCAAAGTTAGCAAT+CGG | - | chr3_2:88014655-88014674 | Msa0435010:intron | 40.0% | |
| ! | ATCACACCGATTGCTAACTT+TGG | + | chr3_2:88014664-88014683 | None:intergenic | 40.0% |
| ATCGAACTAACTGTAGTGTG+TGG | - | chr3_2:88014682-88014701 | Msa0435010:intron | 40.0% | |
| TCGAACTAACTGTAGTGTGT+GGG | - | chr3_2:88014683-88014702 | Msa0435010:intron | 40.0% | |
| !!! | AGGCACAATTTTTTGCAGGT+CGG | + | chr3_2:88015004-88015023 | None:intergenic | 40.0% |
| !!! | AGTGAGGCACAATTTTTTGC+AGG | + | chr3_2:88015008-88015027 | None:intergenic | 40.0% |
| AAAATCAAGTTATCGCCCAG+GGG | + | chr3_2:88015052-88015071 | None:intergenic | 40.0% | |
| CAAAATCAAGTTATCGCCCA+GGG | + | chr3_2:88015053-88015072 | None:intergenic | 40.0% | |
| ACAAAATCAAGTTATCGCCC+AGG | + | chr3_2:88015054-88015073 | None:intergenic | 40.0% | |
| ATAGTTCAAATTCCACCTGG+GGG | - | chr3_2:88015087-88015106 | Msa0435010:CDS | 40.0% | |
| ! | ATCATTTTACAATAGCCCCC+AGG | + | chr3_2:88015105-88015124 | None:intergenic | 40.0% |
| TTCAACACAATTGCAGGATG+TGG | + | chr3_2:88015383-88015402 | None:intergenic | 40.0% | |
| TCCTGCAATTGTGTTGAAGA+TGG | - | chr3_2:88015385-88015404 | Msa0435010:intron | 40.0% | |
| TCCATCTTCAACACAATTGC+AGG | + | chr3_2:88015389-88015408 | None:intergenic | 40.0% | |
| TGCAATTGTGTTGAAGATGG+AGG | - | chr3_2:88015388-88015407 | Msa0435010:intron | 40.0% | |
| ATTGTGTTGAAGATGGAGGA+TGG | - | chr3_2:88015392-88015411 | Msa0435010:intron | 40.0% | |
| ! | GATGCCAAGTGTCTTGTTAA+TGG | - | chr3_2:88015596-88015615 | Msa0435010:intron | 40.0% |
| ! | AAGTGTCTTGTTAATGGCAG+CGG | - | chr3_2:88015602-88015621 | Msa0435010:intron | 40.0% |
| GAAGGAGATGATTGACAAGA+TGG | - | chr3_2:88015793-88015812 | Msa0435010:intron | 40.0% | |
| AGTTACTAAGAGAGTTCAGG+AGG | - | chr3_2:88015958-88015977 | Msa0435010:intron | 40.0% | |
| TGCTCAGCTATATCTTTCCA+AGG | - | chr3_2:88015988-88016007 | Msa0435010:intron | 40.0% | |
| !!! | TTTTTGTGTGGTTTGGTGAG+GGG | + | chr3_2:88016034-88016053 | None:intergenic | 40.0% |
| !!! | CTTTTTGTGTGGTTTGGTGA+GGG | + | chr3_2:88016035-88016054 | None:intergenic | 40.0% |
| !!! | TCTTTTTGTGTGGTTTGGTG+AGG | + | chr3_2:88016036-88016055 | None:intergenic | 40.0% |
| !! | GCAATGTTGATAGCATCTGA+AGG | + | chr3_2:88016138-88016157 | None:intergenic | 40.0% |
| TTTCCACATGCAACTTACAC+AGG | + | chr3_2:88016216-88016235 | None:intergenic | 40.0% | |
| TTCACATTCCTTGGATTCAC+TGG | - | chr3_2:88016255-88016274 | Msa0435010:intron | 40.0% | |
| ACTTTGTACCAGTGAATCCA+AGG | + | chr3_2:88016266-88016285 | None:intergenic | 40.0% | |
| TGGCCCATTATTTACTGAAC+TGG | - | chr3_2:88016497-88016516 | Msa0435010:intron | 40.0% | |
| ATTTACTGAACTGGATCGGT+AGG | - | chr3_2:88016506-88016525 | Msa0435010:intron | 40.0% | |
| TCAACACAAGGCTTACCATT+TGG | + | chr3_2:88016724-88016743 | None:intergenic | 40.0% | |
| ! | TAAGCCTTGTGTTGAAACCA+AGG | - | chr3_2:88016729-88016748 | Msa0435010:CDS | 40.0% |
| AACTCCTTGGTTTCAACACA+AGG | + | chr3_2:88016736-88016755 | None:intergenic | 40.0% | |
| GTGCAAAAGATTGAACTCCT+TGG | + | chr3_2:88016749-88016768 | None:intergenic | 40.0% | |
| CAAAACTATTACCAGCGTCT+TGG | + | chr3_2:88016804-88016823 | None:intergenic | 40.0% | |
| !! | ACCTGTGTTTTTACTCTTGG+AGG | - | chr3_2:88016846-88016865 | Msa0435010:CDS | 40.0% |
| ACCTCCAAGAGTAAAAACAC+AGG | + | chr3_2:88016850-88016869 | None:intergenic | 40.0% | |
| !! | GCGTTGATTGGTCCAATCAT+AGG | + | chr3_2:88014214-88014233 | None:intergenic | 45.0% |
| ATGATTGGACCAATCAACGC+TGG | - | chr3_2:88014214-88014233 | Msa0435010:CDS | 45.0% | |
| !! | CTACTACAACCAGCGTTGAT+TGG | + | chr3_2:88014226-88014245 | None:intergenic | 45.0% |
| TCAGCTTAGTGGCGAGAATA+GGG | - | chr3_2:88014715-88014734 | Msa0435010:intron | 45.0% | |
| ! | TAATTGGGTCTGTACTGGTG+TGG | + | chr3_2:88014778-88014797 | None:intergenic | 45.0% |
| ATGTGTATGGTGTACTCCAG+TGG | - | chr3_2:88014862-88014881 | Msa0435010:intron | 45.0% | |
| ATGGTGTACTCCAGTGGTAA+TGG | - | chr3_2:88014868-88014887 | Msa0435010:intron | 45.0% | |
| ! | GATTTTACGTCAGGTACTCC+GGG | + | chr3_2:88014898-88014917 | None:intergenic | 45.0% |
| ! | GGATTTTACGTCAGGTACTC+CGG | + | chr3_2:88014899-88014918 | None:intergenic | 45.0% |
| !!! | TGTGCCTCACTGATTTTGTG+AGG | - | chr3_2:88015017-88015036 | Msa0435010:intron | 45.0% |
| ! | ATTTTACAATAGCCCCCAGG+TGG | + | chr3_2:88015102-88015121 | None:intergenic | 45.0% |
| TGTGTAGTTGAGGTGAAGAG+TGG | - | chr3_2:88015266-88015285 | Msa0435010:intron | 45.0% | |
| TTGAAGATGGAGGATGGAAC+TGG | - | chr3_2:88015398-88015417 | Msa0435010:intron | 45.0% | |
| GCTGCCATTAACAAGACACT+TGG | + | chr3_2:88015603-88015622 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGGTTTGGTGAGG+GGG | + | chr3_2:88016033-88016052 | None:intergenic | 45.0% |
| TGATAGCATCTGAAGGTCGA+AGG | + | chr3_2:88016131-88016150 | None:intergenic | 45.0% | |
| TCACCTGTGTAAGTTGCATG+TGG | - | chr3_2:88016210-88016229 | Msa0435010:intron | 45.0% | |
| CAGCCAAGTTTCACATTCCT+TGG | - | chr3_2:88016246-88016265 | Msa0435010:intron | 45.0% | |
| TGTATAGGCACCTACAACGT+TGG | + | chr3_2:88016396-88016415 | None:intergenic | 45.0% | |
| !! | ATAATGGGCCATCTGAACCA+GGG | + | chr3_2:88016488-88016507 | None:intergenic | 45.0% |
| !! | AATAATGGGCCATCTGAACC+AGG | + | chr3_2:88016489-88016508 | None:intergenic | 45.0% |
| ACTCCAACTCAACCTTCTTC+TGG | - | chr3_2:88017174-88017193 | Msa0435010:five_prime_UTR | 45.0% | |
| AGACCAGAAGAAGGTTGAGT+TGG | + | chr3_2:88017180-88017199 | None:intergenic | 45.0% | |
| !!! | ATTTAATTTAATTTAACTAT+TGG | + | chr3_2:88014020-88014039 | None:intergenic | 5.0% |
| AACTGTAGTGTGTGGGCAAG+AGG | - | chr3_2:88014690-88014709 | Msa0435010:intron | 50.0% | |
| GTCAGCTTAGTGGCGAGAAT+AGG | - | chr3_2:88014714-88014733 | Msa0435010:intron | 50.0% | |
| CAGCTTAGTGGCGAGAATAG+GGG | - | chr3_2:88014716-88014735 | Msa0435010:intron | 50.0% | |
| CTGGCCTCACAAAATCAGTG+AGG | + | chr3_2:88015024-88015043 | None:intergenic | 50.0% | |
| !!! | CTCACTGATTTTGTGAGGCC+AGG | - | chr3_2:88015022-88015041 | Msa0435010:intron | 50.0% |
| GTAGTTGAGGTGAAGAGTGG+AGG | - | chr3_2:88015269-88015288 | Msa0435010:intron | 50.0% | |
| AGGTGAAGAGTGGAGGAGAT+GGG | - | chr3_2:88015276-88015295 | Msa0435010:intron | 50.0% | |
| GCAGGATGTGGTGCATAATC+CGG | + | chr3_2:88015371-88015390 | None:intergenic | 50.0% | |
| CAACATTGCCGTCAGATGCA+AGG | - | chr3_2:88016149-88016168 | Msa0435010:intron | 50.0% | |
| AACTGGTCCACCAACGTTGT+AGG | - | chr3_2:88016383-88016402 | Msa0435010:intron | 50.0% | |
| ATAGGCACCTACAACGTTGG+TGG | + | chr3_2:88016393-88016412 | None:intergenic | 50.0% | |
| AAACTGTCAACTCAGTCCCC+TGG | - | chr3_2:88016468-88016487 | Msa0435010:intron | 50.0% | |
| ! | TAATGGGCCATCTGAACCAG+GGG | + | chr3_2:88016487-88016506 | None:intergenic | 50.0% |
| !! | CTGATGCAACTCTAGCTCTG+TGG | - | chr3_2:88017032-88017051 | Msa0435010:five_prime_UTR | 50.0% |
| !! | ATGCAACTCTAGCTCTGTGG+AGG | - | chr3_2:88017035-88017054 | Msa0435010:five_prime_UTR | 50.0% |
| !! | TGCAACTCTAGCTCTGTGGA+GGG | - | chr3_2:88017036-88017055 | Msa0435010:five_prime_UTR | 50.0% |
| !! | GGCAAGAGGTGTCAGCTTAG+TGG | - | chr3_2:88014704-88014723 | Msa0435010:intron | 55.0% |
| CTTAGTGGCGAGAATAGGGG+CGG | - | chr3_2:88014719-88014738 | Msa0435010:intron | 55.0% | |
| AATAGGGGCGGACCTAGACT+AGG | - | chr3_2:88014731-88014750 | Msa0435010:intron | 55.0% | |
| TGGCACTTGCCACACCAGTA+CGG | + | chr3_2:88014758-88014777 | None:intergenic | 55.0% | |
| ATCAAGTTATCGCCCAGGGG+CGG | + | chr3_2:88015049-88015068 | None:intergenic | 55.0% | |
| GAGGTGAAGAGTGGAGGAGA+TGG | - | chr3_2:88015275-88015294 | Msa0435010:intron | 55.0% | |
| TGCGTCCATAACAGCCCTCA+TGG | - | chr3_2:88015335-88015354 | Msa0435010:intron | 55.0% | |
| GTCCATAACAGCCCTCATGG+AGG | - | chr3_2:88015338-88015357 | Msa0435010:intron | 55.0% | |
| GTCCTCCATGAGGGCTGTTA+TGG | + | chr3_2:88015343-88015362 | None:intergenic | 55.0% | |
| CCGGAAGAAGTCCTCCATGA+GGG | + | chr3_2:88015352-88015371 | None:intergenic | 55.0% | |
| CCCTCATGGAGGACTTCTTC+CGG | - | chr3_2:88015349-88015368 | Msa0435010:intron | 55.0% | |
| TCCGGAAGAAGTCCTCCATG+AGG | + | chr3_2:88015353-88015372 | None:intergenic | 55.0% | |
| ACTCAGTCCCCTGGTTCAGA+TGG | - | chr3_2:88016477-88016496 | Msa0435010:intron | 55.0% | |
| GACCTAGACTAGGCCCGTAC+TGG | - | chr3_2:88014741-88014760 | Msa0435010:intron | 60.0% | |
| CACCAGTACGGGCCTAGTCT+AGG | + | chr3_2:88014746-88014765 | None:intergenic | 60.0% | |
| ! | AGACTAGGCCCGTACTGGTG+TGG | - | chr3_2:88014746-88014765 | Msa0435010:intron | 60.0% |
| GGCACTTGCCACACCAGTAC+GGG | + | chr3_2:88014757-88014776 | None:intergenic | 60.0% | |
| !! | TCCAGTGGTAATGGTGCGCC+CGG | - | chr3_2:88014877-88014896 | Msa0435010:intron | 60.0% |
| !! | GTGTGGTTTGGTGAGGGGGA+AGG | + | chr3_2:88016029-88016048 | None:intergenic | 60.0% |
| !! | GAAGAGCGCTACCAAGACGC+TGG | - | chr3_2:88016790-88016809 | Msa0435010:CDS | 60.0% |
| TCCGGGCGCACCATTACCAC+TGG | + | chr3_2:88014881-88014900 | None:intergenic | 65.0% | |
| TTATCGCCCAGGGGCGGACC+TGG | + | chr3_2:88015043-88015062 | None:intergenic | 70.0% | |
| TGTGAGGCCAGGTCCGCCCC+TGG | - | chr3_2:88015033-88015052 | Msa0435010:intron | 75.0% | |
| GTGAGGCCAGGTCCGCCCCT+GGG | - | chr3_2:88015034-88015053 | Msa0435010:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88013850 | 88017200 | 88013850 | ID=Msa0435010;Name=Msa0435010 |
| chr3_2 | mRNA | 88013850 | 88017200 | 88013850 | ID=Msa0435010-mRNA-1;Parent=Msa0435010;Name=Msa0435010-mRNA-1;_AED=0.21;_eAED=0.21;_QI=231|0.88|0.9|1|0.77|0.6|10|49|355 |
| chr3_2 | exon | 88013850 | 88014003 | 88013850 | ID=Msa0435010-mRNA-1:exon:25831;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88014183 | 88014330 | 88014183 | ID=Msa0435010-mRNA-1:exon:25830;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88014527 | 88014645 | 88014527 | ID=Msa0435010-mRNA-1:exon:25829;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88014880 | 88014954 | 88014880 | ID=Msa0435010-mRNA-1:exon:25828;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88015041 | 88015106 | 88015041 | ID=Msa0435010-mRNA-1:exon:25827;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88015227 | 88015283 | 88015227 | ID=Msa0435010-mRNA-1:exon:25826;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88015409 | 88015458 | 88015409 | ID=Msa0435010-mRNA-1:exon:25825;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88015607 | 88015777 | 88015607 | ID=Msa0435010-mRNA-1:exon:25824;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88016614 | 88016896 | 88016614 | ID=Msa0435010-mRNA-1:exon:25823;Parent=Msa0435010-mRNA-1 |
| chr3_2 | exon | 88016976 | 88017200 | 88016976 | ID=Msa0435010-mRNA-1:exon:25822;Parent=Msa0435010-mRNA-1 |
| chr3_2 | five_prime_UTR | 88016976 | 88017200 | 88016976 | ID=Msa0435010-mRNA-1:five_prime_utr;Parent=Msa0435010-mRNA-1 |
| chr3_2 | five_prime_UTR | 88016891 | 88016896 | 88016891 | ID=Msa0435010-mRNA-1:five_prime_utr;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88016614 | 88016890 | 88016614 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88015607 | 88015777 | 88015607 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88015409 | 88015458 | 88015409 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88015227 | 88015283 | 88015227 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88015041 | 88015106 | 88015041 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88014880 | 88014954 | 88014880 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88014527 | 88014645 | 88014527 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88014183 | 88014330 | 88014183 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | CDS | 88013899 | 88014003 | 88013899 | ID=Msa0435010-mRNA-1:cds;Parent=Msa0435010-mRNA-1 |
| chr3_2 | three_prime_UTR | 88013850 | 88013898 | 88013850 | ID=Msa0435010-mRNA-1:three_prime_utr;Parent=Msa0435010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
