AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525230 MtrunA17_Chr3g0137821 97.818 825 15 1 1 825 1 822 0.0 1686
Msa0525230 MtrunA17_Chr3g0137791 70.286 838 224 12 1 825 1 826 0.0 1198
Msa0525230 MtrunA17_Chr4g0003411 64.388 834 262 12 1 825 1 808 0.0 1085
Msa0525230 MtrunA17_Chr2g0333021 63.057 831 272 11 4 825 5 809 0.0 1040
Msa0525230 MtrunA17_Chr5g0398161 44.807 828 420 16 4 814 37 844 0.0 686
Msa0525230 MtrunA17_Chr7g0246481 44.699 830 417 18 4 814 298 1104 0.0 685
Msa0525230 MtrunA17_Chr8g0380631 44.983 867 405 23 2 825 12 849 0.0 680
Msa0525230 MtrunA17_Chr3g0143471 44.091 880 407 24 5 825 13 866 0.0 680
Msa0525230 MtrunA17_Chr5g0398171 43.943 842 401 19 4 814 37 838 0.0 674
Msa0525230 MtrunA17_Chr8g0350951 43.593 835 424 17 4 814 228 1039 0.0 668
Msa0525230 MtrunA17_Chr5g0406161 42.207 879 428 18 5 825 16 872 0.0 665
Msa0525230 MtrunA17_Chr2g0330431 43.534 781 379 18 53 825 30 756 0.0 622
Msa0525230 MtrunA17_Chr8g0341931 41.396 831 398 21 2 825 5 753 0.0 588
Msa0525230 MtrunA17_Chr1g0192401 32.500 240 123 10 510 740 733 942 2.60e-21 100
Msa0525230 MtrunA17_Chr1g0192401 30.544 239 123 10 211 435 350 559 1.40e-19 94.4
Msa0525230 MtrunA17_Chr2g0295411 33.333 201 102 5 510 705 783 956 2.75e-18 90.5
Msa0525230 MtrunA17_Chr2g0295411 30.453 243 119 11 211 435 376 586 4.84e-18 89.7
Msa0525230 MtrunA17_Chr5g0406151 51.351 74 30 2 326 399 12 79 6.57e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525230 AT3G15730.1 62.560 828 284 12 3 825 4 810 0.0 1060
Msa0525230 AT1G52570.1 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0525230 AT1G52570.3 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0525230 AT1G52570.2 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0525230 AT5G25370.1 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0525230 AT5G25370.3 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0525230 AT5G25370.2 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0525230 AT5G25370.4 62.850 751 263 12 81 825 5 745 0.0 954
Msa0525230 AT2G42010.1 44.391 829 418 17 4 814 270 1073 0.0 687
Msa0525230 AT4G11830.2 44.153 838 423 20 1 814 30 846 0.0 685
Msa0525230 AT4G11830.1 45.817 777 383 16 59 814 55 814 0.0 684
Msa0525230 AT2G42010.2 43.361 851 420 17 4 814 270 1098 0.0 680
Msa0525230 AT4G11840.1 43.705 842 417 20 3 814 42 856 0.0 673
Msa0525230 AT4G00240.1 44.058 833 415 19 4 814 114 917 0.0 671
Msa0525230 AT4G11850.1 44.019 836 419 19 3 814 38 848 0.0 668
Msa0525230 AT4G35790.2 43.886 875 410 19 4 825 11 857 0.0 668
Msa0525230 AT4G00240.3 45.349 774 386 15 59 814 11 765 0.0 667
Msa0525230 AT4G00240.2 45.349 774 386 15 59 814 128 882 0.0 666
Msa0525230 AT4G35790.1 43.567 886 408 20 4 825 11 868 0.0 661
Msa0525230 AT4G11840.2 43.214 840 394 19 3 814 42 826 0.0 655
Msa0525230 AT1G55180.2 41.000 800 397 23 39 825 3 740 0.0 582
Msa0525230 AT1G55180.1 41.184 794 392 23 45 825 31 762 0.0 581
Msa0525230 AT4G35790.3 42.857 693 323 15 4 643 11 683 1.80e-168 504
Msa0525230 AT4G11830.4 42.697 623 325 15 1 609 30 634 1.79e-160 481
Msa0525230 AT4G11830.3 42.904 606 314 15 1 592 30 617 2.15e-156 471
Msa0525230 AT3G05630.1 34.413 247 125 9 512 750 714 931 2.16e-24 110
Msa0525230 AT3G05630.1 32.218 239 119 10 211 435 363 572 2.78e-19 94.0
Msa0525230 AT3G16785.6 33.182 220 101 9 231 435 389 577 6.14e-20 95.9
Msa0525230 AT3G16785.6 36.453 203 95 7 509 705 756 930 9.27e-20 95.5
Msa0525230 AT3G16785.5 33.182 220 101 9 231 435 389 577 6.14e-20 95.9
Msa0525230 AT3G16785.5 36.453 203 95 7 509 705 756 930 9.27e-20 95.5
Msa0525230 AT3G16785.4 33.182 220 101 9 231 435 389 577 6.19e-20 96.3
Msa0525230 AT3G16785.4 36.453 203 95 7 509 705 756 930 1.06e-19 95.5
Msa0525230 AT3G16785.1 33.182 220 101 9 231 435 389 577 6.72e-20 95.9
Msa0525230 AT3G16785.1 36.453 203 95 7 509 705 756 930 9.54e-20 95.5
Msa0525230 AT3G16785.3 33.182 220 101 9 231 435 389 577 7.13e-20 95.9
Msa0525230 AT3G16785.3 36.453 203 95 7 509 705 756 930 9.79e-20 95.5
Msa0525230 AT3G16785.2 33.182 220 101 9 231 435 389 577 7.13e-20 95.9
Msa0525230 AT3G16785.2 36.453 203 95 7 509 705 756 930 9.79e-20 95.5

Find 203 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGTCTCATTCCATTTC+GGG 0.167631 3_4:+78757946 None:intergenic
CTACTTTCTGTTGGCTTGTT+TGG 0.177927 3_4:+78757432 None:intergenic
GATACAATGGCTTTGATTCT+TGG 0.200605 3_4:-78755414 Msa0525230:CDS
TTTACGCATTCCACACTTTC+AGG 0.207301 3_4:+78755585 None:intergenic
ATAGAAGCACCTGGGAAATT+TGG 0.213465 3_4:+78757003 None:intergenic
CCAAATGAAGTTATTGAATT+AGG 0.215359 3_4:-78756712 Msa0525230:CDS
TTCCACCATCCATTGATCTT+TGG 0.219999 3_4:+78755757 None:intergenic
GTTGCAAGCTGGATGTAATT+TGG 0.224934 3_4:-78758532 Msa0525230:CDS
CTAGGACTAGGTGGTAAGTA+TGG 0.233733 3_4:+78755368 None:intergenic
CAACCTATCAACTTCACTTA+TGG 0.246044 3_4:+78758551 None:intergenic
TACTTTCTGTTGGCTTGTTT+GGG 0.247108 3_4:+78757433 None:intergenic
GGAAGTGTGACATCACTTTC+AGG 0.249099 3_4:-78755453 Msa0525230:CDS
TAAAATACTCTGCAGTTTCT+TGG 0.255279 3_4:+78757286 None:intergenic
TCAAAGGTCTCATTCCATTT+CGG 0.277608 3_4:+78757945 None:intergenic
GGGTTGATTCCCTATCATTC+TGG 0.280304 3_4:+78757974 None:intergenic
TTAATGTTCTTGTGCTTGTT+TGG 0.292615 3_4:-78757365 Msa0525230:CDS
ACAAACGGGAACTATTTCTT+TGG 0.299627 3_4:+78758719 None:intergenic
TCAACCCATCTGTCAATTAT+AGG 0.308791 3_4:+78757807 None:intergenic
AAAGTCTTTATTTACATAAC+TGG 0.310682 3_4:-78757492 Msa0525230:CDS
ATACAGAAATAACCTTGATT+AGG 0.319930 3_4:-78757458 Msa0525230:CDS
ATTCTATCAAGCTCTTGAAT+TGG 0.328163 3_4:+78756844 None:intergenic
CATCAACAACTATAGTCTTT+TGG 0.330540 3_4:+78757166 None:intergenic
AAGAACATTAACACCTTCAT+TGG 0.337331 3_4:+78757377 None:intergenic
CCTAATTCAATAACTTCATT+TGG 0.339645 3_4:+78756712 None:intergenic
TACAGAAATAACCTTGATTA+GGG 0.344363 3_4:-78757457 Msa0525230:CDS
CTCATTCCATTTCGGGTTTG+AGG 0.344995 3_4:+78757953 None:intergenic
AGAATCAAAGCCATTGTATC+AGG 0.349603 3_4:+78755417 None:intergenic
CTTCAACAGGATACCGTAAA+AGG 0.350159 3_4:+78755487 None:intergenic
CGAACAGTTATCAGTTTCAT+AGG 0.359772 3_4:-78757117 Msa0525230:CDS
GATATTAAAGTTGAGGATAT+TGG 0.365230 3_4:-78756553 Msa0525230:CDS
CATCCATGGATACCAATATC+TGG 0.368621 3_4:-78757576 Msa0525230:CDS
TTCTATCAAGCTCTTGAATT+GGG 0.378843 3_4:+78756845 None:intergenic
CCAATTGGTGCAACTCTAAT+CGG 0.382314 3_4:-78757867 Msa0525230:CDS
AGACCACAAGGTCAAGTATA+TGG 0.383000 3_4:-78755666 Msa0525230:CDS
GTTGGACGAACCAGAATGAT+AGG 0.386126 3_4:-78757984 Msa0525230:CDS
CATCTTACCTATCATCATCT+TGG 0.386141 3_4:+78756171 None:intergenic
ACCTGAGAGTGCATCAGTTC+AGG 0.390624 3_4:-78756422 Msa0525230:CDS
CATGATTTCATCAAAGTGTA+AGG 0.391165 3_4:+78755248 None:intergenic
CTGTCAGGCTCTGGTTGCTC+TGG 0.392079 3_4:+78756244 None:intergenic
CCATCTTCACCCACTTCAAC+AGG 0.395226 3_4:+78755474 None:intergenic
CCGATTAGAGTTGCACCAAT+TGG 0.395417 3_4:+78757867 None:intergenic
TAATGTTCTTGTGCTTGTTT+GGG 0.399896 3_4:-78757364 Msa0525230:CDS
ATATCTTCCCAACATCTTCC+AGG 0.400559 3_4:+78757537 None:intergenic
ATTGAAAATCAGTATTTCCT+AGG 0.407400 3_4:-78756601 Msa0525230:CDS
CAGTTCAGGCAATATTAGAT+TGG 0.408091 3_4:-78756408 Msa0525230:CDS
ACCGTGTTGCTGAGAGGAAT+TGG 0.410354 3_4:-78755554 Msa0525230:CDS
ATCAACCCTCAAACCCGAAA+TGG 0.413276 3_4:-78757959 Msa0525230:CDS
CAGAAGAAGATGGCGAAACT+TGG 0.417133 3_4:-78756792 Msa0525230:CDS
CAAAAGACTATAGTTGTTGA+TGG 0.423538 3_4:-78757165 Msa0525230:CDS
CTTGTTTGGGTCCCTAATCA+AGG 0.426022 3_4:+78757446 None:intergenic
GCATTATGGTATGAACATAT+TGG 0.427241 3_4:-78755633 Msa0525230:CDS
CAAGCTCTTGAATTGGGAAC+AGG 0.427300 3_4:+78756851 None:intergenic
AAAGACTTTAGCATTCATAA+TGG 0.428519 3_4:+78757506 None:intergenic
GGAAATAATGGCTGAACAAA+CGG 0.432945 3_4:+78758704 None:intergenic
ATGGCTTCAGGAGAGCATTA+TGG 0.435411 3_4:-78755647 Msa0525230:CDS
GATATTCACTGCAAGCTAGA+AGG 0.435535 3_4:-78756949 Msa0525230:CDS
GTCAAAGATGATAATCCAAT+TGG 0.435782 3_4:-78757882 Msa0525230:CDS
TCATTCCATTTCGGGTTTGA+GGG 0.436659 3_4:+78757954 None:intergenic
GTTCATTCCAAGATGATGAT+AGG 0.436783 3_4:-78756178 Msa0525230:intron
TAACCATAAGTGAAGTTGAT+AGG 0.438118 3_4:-78758554 Msa0525230:CDS
CTATGATAACAACCTTGTCT+TGG 0.440091 3_4:+78755322 None:intergenic
ATCTTCAATGACAACTCCTT+TGG 0.440344 3_4:+78756514 None:intergenic
ATCCATGGATGAACACTGTC+AGG 0.442733 3_4:+78757588 None:intergenic
GAATTGGGAACAGGAATTGT+TGG 0.442982 3_4:+78756860 None:intergenic
CATTGATCTTTGGTTTATGT+TGG 0.443067 3_4:+78755767 None:intergenic
TCCTAGGGAGTTCCTATGGT+TGG 0.446572 3_4:-78756585 Msa0525230:CDS
GCTGCTACATGGGACACTTA+AGG 0.452370 3_4:-78758577 Msa0525230:CDS
ACAAGATACAACCCTTGACT+TGG 0.452543 3_4:+78758167 None:intergenic
TTTCTTGAGTATTTCTCCTA+GGG 0.452951 3_4:+78757404 None:intergenic
GCACTCTCAGGTATACCTTC+TGG 0.455321 3_4:+78756433 None:intergenic
TTGTGGTCTTTGTGAGCCAT+TGG 0.456429 3_4:+78755680 None:intergenic
CCAGGTGCTTCTATTAAGAA+AGG 0.457313 3_4:-78756994 Msa0525230:CDS
ATTGTTAGCAAAATTGAAGC+TGG 0.460007 3_4:-78756493 Msa0525230:CDS
GGACGACAGAACCTCTGTTC+CGG 0.460427 3_4:-78757343 Msa0525230:CDS
AAGGTCAAGTATATGGCTTC+AGG 0.460768 3_4:-78755659 Msa0525230:CDS
CAGTTGTTTAGATCCATTGA+TGG 0.464754 3_4:-78756763 Msa0525230:CDS
GTTCCAGATATTGGTATCCA+TGG 0.465135 3_4:+78757573 None:intergenic
TAACTTCATTTGGTGCTTGA+GGG 0.468911 3_4:+78756722 None:intergenic
AAAATGCCTCAGCTGCTACA+TGG 0.472016 3_4:-78758588 Msa0525230:CDS
ATAACTTCATTTGGTGCTTG+AGG 0.473405 3_4:+78756721 None:intergenic
GAAATAATGGCTGAACAAAC+GGG 0.474517 3_4:+78758705 None:intergenic
AGAAACAGCACCACCATCAA+TGG 0.474765 3_4:+78756750 None:intergenic
CCTGTTGAAGTGGGTGAAGA+TGG 0.476067 3_4:-78755474 Msa0525230:CDS
AAAAGGGAGAGTAAGAAAGA+TGG 0.477240 3_4:-78756280 Msa0525230:CDS
GCCTGAACTGATGCACTCTC+AGG 0.477938 3_4:+78756421 None:intergenic
TATTTCCTAGGGAGTTCCTA+TGG 0.478923 3_4:-78756589 Msa0525230:CDS
TTTGCGATCCTTCAACATGA+TGG 0.480827 3_4:+78757142 None:intergenic
TGATAATCACTGTCAGGCTC+TGG 0.481330 3_4:+78756235 None:intergenic
TCTTTGTGAGCCATTGGATG+TGG 0.483037 3_4:+78755686 None:intergenic
ATTGAATTAGGCCTTGTTAG+TGG 0.484468 3_4:-78756700 Msa0525230:CDS
GTTGATGAAAATCATCATGA+TGG 0.485239 3_4:+78757025 None:intergenic
GATATAGATCATAGCATAGC+AGG 0.485628 3_4:-78758637 Msa0525230:five_prime_UTR
GAAGATCATCGTCCTGTACC+AGG 0.485983 3_4:-78757771 Msa0525230:CDS
GATTTAGATAAAGCAAGGGT+TGG 0.486390 3_4:-78758002 Msa0525230:CDS
CAATATTAGATTGGCAAAGA+AGG 0.486949 3_4:-78756399 Msa0525230:CDS
TCTTTATTTACATAACTGGT+TGG 0.487503 3_4:-78757488 Msa0525230:CDS
TCAGGCTCTGGTTGCTCTGG+AGG 0.487804 3_4:+78756247 None:intergenic
CACTTGTGATGAAGATTGTT+GGG 0.493040 3_4:-78758046 Msa0525230:intron
TACAACACATCCCATGCAAT+AGG 0.493852 3_4:+78756925 None:intergenic
AGAGGTGGGAAAAGCAAGTC+GGG 0.494783 3_4:-78756891 Msa0525230:CDS
AGGGTGATACTACTTTCTGT+TGG 0.495579 3_4:+78757423 None:intergenic
CCACTTGTGATGAAGATTGT+TGG 0.497598 3_4:-78758047 Msa0525230:intron
TTATGTACCTGGAAGATGTT+GGG 0.499994 3_4:-78757544 Msa0525230:CDS
TCTTCGTATAGCATTTATGT+AGG 0.504718 3_4:+78756642 None:intergenic
GCTCTATGATAATCACTGTC+AGG 0.504896 3_4:+78756229 None:intergenic
ATATCATGCCACGGTTCTCT+AGG 0.506247 3_4:+78756967 None:intergenic
AGGTGGTAAGTATGGGAGGA+AGG 0.511866 3_4:+78755376 None:intergenic
CCTTTCTTAATAGAAGCACC+TGG 0.512394 3_4:+78756994 None:intergenic
TTTACGGTATCCTGTTGAAG+TGG 0.514342 3_4:-78755484 Msa0525230:CDS
AAACCGTCTTTCTTAAAAGC+CGG 0.515049 3_4:+78757324 None:intergenic
TTCAACTGATATTAAAGTTG+AGG 0.520279 3_4:-78756560 Msa0525230:CDS
TTGAAAATCAGTATTTCCTA+GGG 0.521701 3_4:-78756600 Msa0525230:CDS
TAATTTGGATTTCTGTCGAA+AGG 0.523952 3_4:-78758517 Msa0525230:intron
AAATGCCTCAGCTGCTACAT+GGG 0.524555 3_4:-78758587 Msa0525230:CDS
AGAGAGGTTTGTTGTGTATG+TGG 0.525642 3_4:-78756470 Msa0525230:CDS
AAGCACTGTGCTAGCTAGCT+AGG 0.526978 3_4:+78755350 None:intergenic
GGGGTCGGGAGAGGAAATAA+TGG 0.528859 3_4:+78758692 None:intergenic
CAACATAAACCAAAGATCAA+TGG 0.528894 3_4:-78755766 Msa0525230:CDS
TTTAAGAAAGACGGTTTGAT+GGG 0.532749 3_4:-78757318 Msa0525230:CDS
TTGAGGATAGAAAATGTCTA+TGG 0.533093 3_4:-78757707 Msa0525230:CDS
CTAGCTAGCACAGTGCTTGA+CGG 0.534749 3_4:-78755345 Msa0525230:three_prime_UTR
TGATGAAATCATGTGGTACA+AGG 0.537673 3_4:-78755238 Msa0525230:three_prime_UTR
AGAAAATGTCTATGGTCTCA+AGG 0.538595 3_4:-78757699 Msa0525230:CDS
TCTGATAACATTGCATCAGA+AGG 0.542244 3_4:+78756811 None:intergenic
AGCTAGAAGGACCTATTGCA+TGG 0.543044 3_4:-78756936 Msa0525230:CDS
TTTCATCAACCAAATTTCCC+AGG 0.543862 3_4:-78757012 Msa0525230:CDS
GGTATACCTTCTGGCCACAT+TGG 0.545537 3_4:+78756442 None:intergenic
AAGGACCTATAATTGACAGA+TGG 0.549514 3_4:-78757812 Msa0525230:CDS
TCAAGGGTTGTATCTTGTGC+CGG 0.551228 3_4:-78758162 Msa0525230:CDS
GAAGTGTGACATCACTTTCA+GGG 0.551309 3_4:-78755452 Msa0525230:CDS
TTCGATCAGAGACAAGGTTG+TGG 0.553785 3_4:-78757639 Msa0525230:CDS
GTTGATGGCCATCATGTTGA+AGG 0.554676 3_4:-78757150 Msa0525230:CDS
GACTAGGTGGTAAGTATGGG+AGG 0.555923 3_4:+78755372 None:intergenic
TTGTATCTTGTGCCGGCCTG+AGG 0.558222 3_4:-78758155 Msa0525230:intron
AGAGACACAGAGATTGCAAT+GGG 0.562687 3_4:-78755735 Msa0525230:CDS
ATAACATTGCATCAGAAGGA+TGG 0.563136 3_4:+78756815 None:intergenic
CAGTTGATTTAGATAAAGCA+AGG 0.564307 3_4:-78758007 Msa0525230:CDS
ATTATGTACCTGGAAGATGT+TGG 0.564788 3_4:-78757545 Msa0525230:CDS
AGGACCTATAATTGACAGAT+GGG 0.565090 3_4:-78757811 Msa0525230:CDS
GATGATGAATACATAGTGAT+TGG 0.566916 3_4:-78755795 Msa0525230:CDS
TTACGGTATCCTGTTGAAGT+GGG 0.569394 3_4:-78755483 Msa0525230:CDS
TGTGCTAGCTAGCTAGGACT+AGG 0.570468 3_4:+78755356 None:intergenic
GCAATTCTCTAGTGTCATTG+AGG 0.571602 3_4:-78757724 Msa0525230:CDS
GGAACAAAATATTATGTACC+TGG 0.572833 3_4:-78757555 Msa0525230:CDS
TCCCTGACAGTGTTCATCCA+TGG 0.573348 3_4:-78757590 Msa0525230:CDS
CAAAATGTAGGGGTCGGGAG+AGG 0.575553 3_4:+78758683 None:intergenic
GAGATTTCTAGCCCAAGTCA+AGG 0.578002 3_4:-78758179 Msa0525230:CDS
TAGGACTAGGTGGTAAGTAT+GGG 0.578728 3_4:+78755369 None:intergenic
GCAAAATTGAAGCTGGAGAG+AGG 0.581821 3_4:-78756486 Msa0525230:CDS
CTCAGTATACATCATCTCCA+TGG 0.584166 3_4:+78756375 None:intergenic
TGTCAGGGACATGAGCGTCT+TGG 0.584673 3_4:+78757604 None:intergenic
CAAGATACAACCCTTGACTT+GGG 0.589678 3_4:+78758168 None:intergenic
CATCTAGCATCCACATCCAA+TGG 0.592837 3_4:-78755696 Msa0525230:CDS
TTATGTCCGCGTAACCCTGA+TGG 0.596322 3_4:-78757240 Msa0525230:CDS
GCCAACCATAGGAACTCCCT+AGG 0.597582 3_4:+78756584 None:intergenic
TCCAATTCCTCTCAGCAACA+CGG 0.598333 3_4:+78755553 None:intergenic
GAAGTTGATAGGTTGCAAGC+TGG 0.598778 3_4:-78758543 Msa0525230:CDS
ATGAGCACAATAGATTTCAA+AGG 0.601968 3_4:+78757929 None:intergenic
TGCATTGCATCTCATACCAA+AGG 0.606137 3_4:-78756530 Msa0525230:CDS
AGATTTCTAGCCCAAGTCAA+GGG 0.608267 3_4:-78758178 Msa0525230:CDS
ATATAGATCATAGCATAGCA+GGG 0.609293 3_4:-78758636 Msa0525230:five_prime_UTR
TTGTTTAGATCCATTGATGG+TGG 0.610089 3_4:-78756760 Msa0525230:CDS
ATCAGTTGAATGCCAACCAT+AGG 0.610416 3_4:+78756573 None:intergenic
TTAAATTGTGTACCTCAGGC+CGG 0.610436 3_4:+78758143 None:intergenic
AACCAAAGATCAATGGATGG+TGG 0.611885 3_4:-78755759 Msa0525230:CDS
CAGAGGTGGGAAAAGCAAGT+CGG 0.616576 3_4:-78756892 Msa0525230:CDS
TTTCCACCATCAGGGTTACG+CGG 0.618021 3_4:+78757234 None:intergenic
AGTTGATTTAGATAAAGCAA+GGG 0.621560 3_4:-78758006 Msa0525230:CDS
TACACTTTGATGAAATCATG+TGG 0.621582 3_4:-78755245 Msa0525230:three_prime_UTR
TTGGACGAACCAGAATGATA+GGG 0.623042 3_4:-78757983 Msa0525230:CDS
ACAGAAAGTAGTATCACCCT+AGG 0.623457 3_4:-78757420 Msa0525230:CDS
AGTGTCCCATGTAGCAGCTG+AGG 0.627470 3_4:+78758582 None:intergenic
GGTGGTATTGATCTGTGTGA+TGG 0.628015 3_4:-78757096 Msa0525230:CDS
TAAAGGGAACAACACACAAG+GGG 0.628918 3_4:-78758204 Msa0525230:intron
AGTGCTTGACGGCCAAGACA+AGG 0.628973 3_4:-78755334 Msa0525230:three_prime_UTR
GTGTTCAAAGTTGAAAACAA+AGG 0.629611 3_4:+78757051 None:intergenic
GCTAGAAGGACCTATTGCAT+GGG 0.631026 3_4:-78756935 Msa0525230:CDS
TGTCCGCGTAACCCTGATGG+TGG 0.631372 3_4:-78757237 Msa0525230:CDS
ACAGTTATCAGTTTCATAGG+TGG 0.633175 3_4:-78757114 Msa0525230:CDS
ATAAACCAAAGATCAATGGA+TGG 0.633380 3_4:-78755762 Msa0525230:CDS
CCTTCCGAGAAAATTCTCAA+AGG 0.639521 3_4:-78757831 Msa0525230:CDS
AAGCCATATACTTGACCTTG+TGG 0.641516 3_4:+78755663 None:intergenic
TTTCTTAAAAGCCGGAACAG+AGG 0.644428 3_4:+78757332 None:intergenic
CTTTCTTAATAGAAGCACCT+GGG 0.646815 3_4:+78756995 None:intergenic
GGTGCTTCTATTAAGAAAGG+TGG 0.653659 3_4:-78756991 Msa0525230:CDS
GTGATTCCAATGTGGCCAGA+AGG 0.653982 3_4:-78756448 Msa0525230:CDS
GCAATGTTATCAGAAGAAGA+TGG 0.655613 3_4:-78756802 Msa0525230:CDS
ATAGTGTATGAACGAGCAAG+TGG 0.657900 3_4:+78755197 None:intergenic
AAGAGACACAGAGATTGCAA+TGG 0.659014 3_4:-78755736 Msa0525230:CDS
TTGCAGTGAATATCATGCCA+CGG 0.660624 3_4:+78756958 None:intergenic
AATAAAGGGAACAACACACA+AGG 0.665452 3_4:-78758206 Msa0525230:intron
AGATTGGCAAAGAAGGACCA+TGG 0.665799 3_4:-78756392 Msa0525230:CDS
GCTAGCTAGCTAGGACTAGG+TGG 0.669608 3_4:+78755359 None:intergenic
TGATGGAAGATATGATACAA+TGG 0.676865 3_4:-78757079 Msa0525230:CDS
GATGTGGATGCTAGATGATG+AGG 0.676901 3_4:+78755702 None:intergenic
TAAAATGTCAAATAATCACG+AGG 0.677762 3_4:+78756313 None:intergenic
AAAATGTCAAATAATCACGA+GGG 0.681608 3_4:+78756314 None:intergenic
TCCATGGATGAACACTGTCA+GGG 0.688183 3_4:+78757589 None:intergenic
ATAAAGGGAACAACACACAA+GGG 0.688691 3_4:-78758205 Msa0525230:intron
AATGGCTCACAAAGACCACA+AGG 0.712737 3_4:-78755678 Msa0525230:CDS
TGTATGTGGTGATTCCAATG+TGG 0.713699 3_4:-78756456 Msa0525230:CDS
GATCATCGTCCTGTACCAGG+CGG 0.755483 3_4:-78757768 Msa0525230:CDS
AAGGTGGTCCTAGAGAACCG+TGG 0.794041 3_4:-78756975 Msa0525230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTTACAAAATGTA+GGG + chr3_4:78755203-78755222 None:intergenic 15.0%
!!! TTCAATTTTTTACAAAATGT+AGG + chr3_4:78755204-78755223 None:intergenic 15.0%
!! TTGAAGTTTAAATTCATAAA+TGG - chr3_4:78755440-78755459 Msa0525230:CDS 15.0%
!! CATATAAGCTATTATATTAT+AGG + chr3_4:78757736-78757755 None:intergenic 15.0%
!! AAAAGATTTATTTGAATGTT+TGG + chr3_4:78757773-78757792 None:intergenic 15.0%
!!! ACATTCAAATAAATCTTTTT+AGG - chr3_4:78757774-78757793 Msa0525230:CDS 15.0%
!! AAACCTAGAAAATATATATT+TGG - chr3_4:78757968-78757987 Msa0525230:CDS 15.0%
!!! CAATTTTTTACAAAATGTAG+GGG + chr3_4:78755202-78755221 None:intergenic 20.0%
!! AAATGGCAAAATATATTATG+CGG - chr3_4:78755457-78755476 Msa0525230:CDS 20.0%
!! AATTTGTGTATTCAATGAAT+TGG - chr3_4:78755547-78755566 Msa0525230:CDS 20.0%
!!! TAATATTTTGTTCCAGATAT+TGG + chr3_4:78756311-78756330 None:intergenic 20.0%
!!! AAAGTCTTTATTTACATAAC+TGG - chr3_4:78756380-78756399 Msa0525230:CDS 20.0%
!!! AGAGTATTTTAAAAACACAA+AGG - chr3_4:78756598-78756617 Msa0525230:CDS 20.0%
!!! TTCAACATTCTTCTTTTTTA+TGG + chr3_4:78757533-78757552 None:intergenic 20.0%
!!! TATTTGACATTTTATTGTCT+TGG - chr3_4:78757568-78757587 Msa0525230:CDS 20.0%
!!! ATTTTATTGTCTTGGTAAAA+GGG - chr3_4:78757576-78757595 Msa0525230:CDS 20.0%
!!! TTCAAATAAATCTTTTTAGG+TGG - chr3_4:78757777-78757796 Msa0525230:CDS 20.0%
!! AATGAAAAATCATGATAGTT+AGG + chr3_4:78757933-78757952 None:intergenic 20.0%
!!! ATTTTCTAGGTTTTGAATAT+AGG + chr3_4:78757961-78757980 None:intergenic 20.0%
!!! ATGCCAAATATATATTTTCT+AGG + chr3_4:78757974-78757993 None:intergenic 20.0%
!! ATAAAGTAAACAATCAATGT+TGG + chr3_4:78758042-78758061 None:intergenic 20.0%
! CAAAATATATTATGCGGTAT+TGG - chr3_4:78755463-78755482 Msa0525230:CDS 25.0%
! AAGAAAAAAATATAGTGCCA+CGG + chr3_4:78755630-78755649 None:intergenic 25.0%
!! TTTTCTTCTGTCAAATATTG+TGG - chr3_4:78755643-78755662 Msa0525230:CDS 25.0%
! TGTCAAATATTGTGGAATAA+AGG - chr3_4:78755651-78755670 Msa0525230:CDS 25.0%
! GTCAAATATTGTGGAATAAA+GGG - chr3_4:78755652-78755671 Msa0525230:CDS 25.0%
! TATACAAATGGTAGAAAGTT+TGG + chr3_4:78755755-78755774 None:intergenic 25.0%
!! ACATGAAAAGCATATACAAA+TGG + chr3_4:78755767-78755786 None:intergenic 25.0%
!! AGTTGATTTAGATAAAGCAA+GGG - chr3_4:78755866-78755885 Msa0525230:intron 25.0%
! AAAGACTTTAGCATTCATAA+TGG + chr3_4:78756369-78756388 None:intergenic 25.0%
!! TCTTTATTTACATAACTGGT+TGG - chr3_4:78756384-78756403 Msa0525230:CDS 25.0%
! ATACAGAAATAACCTTGATT+AGG - chr3_4:78756414-78756433 Msa0525230:CDS 25.0%
! TACAGAAATAACCTTGATTA+GGG - chr3_4:78756415-78756434 Msa0525230:CDS 25.0%
! CCTAATTCAATAACTTCATT+TGG + chr3_4:78757163-78757182 None:intergenic 25.0%
! CCAAATGAAGTTATTGAATT+AGG - chr3_4:78757160-78757179 Msa0525230:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+AGG - chr3_4:78757271-78757290 Msa0525230:CDS 25.0%
! TTGAAAATCAGTATTTCCTA+GGG - chr3_4:78757272-78757291 Msa0525230:CDS 25.0%
! TTCAACTGATATTAAAGTTG+AGG - chr3_4:78757312-78757331 Msa0525230:CDS 25.0%
! GATATTAAAGTTGAGGATAT+TGG - chr3_4:78757319-78757338 Msa0525230:CDS 25.0%
! AAAATGTCAAATAATCACGA+GGG + chr3_4:78757561-78757580 None:intergenic 25.0%
! TAAAATGTCAAATAATCACG+AGG + chr3_4:78757562-78757581 None:intergenic 25.0%
!! CATTTTATTGTCTTGGTAAA+AGG - chr3_4:78757575-78757594 Msa0525230:CDS 25.0%
!! GTGTTTCATATGGTTTTTAT+TGG - chr3_4:78757816-78757835 Msa0525230:CDS 25.0%
! AAAAATCATGATAGTTAGGT+AGG + chr3_4:78757929-78757948 None:intergenic 25.0%
! AAAAATCTATGAAACAAGTG+AGG + chr3_4:78758703-78758722 None:intergenic 25.0%
! TTTTTACAAAATGTAGGGGT+CGG + chr3_4:78755198-78755217 None:intergenic 30.0%
ATATAGATCATAGCATAGCA+GGG - chr3_4:78755236-78755255 Msa0525230:three_prime_UTR 30.0%
! TAACCATAAGTGAAGTTGAT+AGG - chr3_4:78755318-78755337 Msa0525230:intron 30.0%
TAATTTGGATTTCTGTCGAA+AGG - chr3_4:78755355-78755374 Msa0525230:exon 30.0%
!! AAGTCTTTAAAAAGTGTCAC+AGG + chr3_4:78755507-78755526 None:intergenic 30.0%
! AGCTCATTTAATTTAATCCG+TGG - chr3_4:78755610-78755629 Msa0525230:CDS 30.0%
! CAGTTGATTTAGATAAAGCA+AGG - chr3_4:78755865-78755884 Msa0525230:intron 30.0%
ATGAGCACAATAGATTTCAA+AGG + chr3_4:78755946-78755965 None:intergenic 30.0%
GTCAAAGATGATAATCCAAT+TGG - chr3_4:78755990-78756009 Msa0525230:intron 30.0%
TTGAGGATAGAAAATGTCTA+TGG - chr3_4:78756165-78756184 Msa0525230:intron 30.0%
GGAACAAAATATTATGTACC+TGG - chr3_4:78756317-78756336 Msa0525230:CDS 30.0%
TTTCTTGAGTATTTCTCCTA+GGG + chr3_4:78756471-78756490 None:intergenic 30.0%
! TTTTCTTGAGTATTTCTCCT+AGG + chr3_4:78756472-78756491 None:intergenic 30.0%
AAGAACATTAACACCTTCAT+TGG + chr3_4:78756498-78756517 None:intergenic 30.0%
TTAATGTTCTTGTGCTTGTT+TGG - chr3_4:78756507-78756526 Msa0525230:CDS 30.0%
TAATGTTCTTGTGCTTGTTT+GGG - chr3_4:78756508-78756527 Msa0525230:CDS 30.0%
!! TTTTAAGAAAGACGGTTTGA+TGG - chr3_4:78756553-78756572 Msa0525230:CDS 30.0%
TTTAAGAAAGACGGTTTGAT+GGG - chr3_4:78756554-78756573 Msa0525230:CDS 30.0%
TAAAATACTCTGCAGTTTCT+TGG + chr3_4:78756589-78756608 None:intergenic 30.0%
! CATCAACAACTATAGTCTTT+TGG + chr3_4:78756709-78756728 None:intergenic 30.0%
CAAAAGACTATAGTTGTTGA+TGG - chr3_4:78756707-78756726 Msa0525230:CDS 30.0%
TGATGGAAGATATGATACAA+TGG - chr3_4:78756793-78756812 Msa0525230:CDS 30.0%
GTGTTCAAAGTTGAAAACAA+AGG + chr3_4:78756824-78756843 None:intergenic 30.0%
! GTTGATGAAAATCATCATGA+TGG + chr3_4:78756850-78756869 None:intergenic 30.0%
TTCTATCAAGCTCTTGAATT+GGG + chr3_4:78757030-78757049 None:intergenic 30.0%
ATTCTATCAAGCTCTTGAAT+TGG + chr3_4:78757031-78757050 None:intergenic 30.0%
TCTTCGTATAGCATTTATGT+AGG + chr3_4:78757233-78757252 None:intergenic 30.0%
ATTGTTAGCAAAATTGAAGC+TGG - chr3_4:78757379-78757398 Msa0525230:CDS 30.0%
CAATATTAGATTGGCAAAGA+AGG - chr3_4:78757473-78757492 Msa0525230:CDS 30.0%
TGAATGTTTGGACTTTGTAA+AGG + chr3_4:78757761-78757780 None:intergenic 30.0%
!!! ATCTTTTTAGGTGGTTTCTA+AGG - chr3_4:78757786-78757805 Msa0525230:CDS 30.0%
GAAACTCTAACAACTATCAA+TGG - chr3_4:78757861-78757880 Msa0525230:CDS 30.0%
ATTTAGTCCAATCTTCTTAC+GGG + chr3_4:78757892-78757911 None:intergenic 30.0%
CATTTAGTCCAATCTTCTTA+CGG + chr3_4:78757893-78757912 None:intergenic 30.0%
!!! ACTTTATTTTGTTCCTGTAG+TGG - chr3_4:78758055-78758074 Msa0525230:intron 30.0%
GATGATGAATACATAGTGAT+TGG - chr3_4:78758077-78758096 Msa0525230:intron 30.0%
! CATTGATCTTTGGTTTATGT+TGG + chr3_4:78758108-78758127 None:intergenic 30.0%
CAACATAAACCAAAGATCAA+TGG - chr3_4:78758106-78758125 Msa0525230:intron 30.0%
ATAAACCAAAGATCAATGGA+TGG - chr3_4:78758110-78758129 Msa0525230:intron 30.0%
GCATTATGGTATGAACATAT+TGG - chr3_4:78758239-78758258 Msa0525230:intron 30.0%
! GTGTAAATACTCACCTTTTA+CGG - chr3_4:78758372-78758391 Msa0525230:intron 30.0%
! GCAATATTTTCCTGATACAA+TGG - chr3_4:78758445-78758464 Msa0525230:intron 30.0%
CATGATTTCATCAAAGTGTA+AGG + chr3_4:78758627-78758646 None:intergenic 30.0%
TACACTTTGATGAAATCATG+TGG - chr3_4:78758627-78758646 Msa0525230:five_prime_UTR 30.0%
GAAATAATGGCTGAACAAAC+GGG + chr3_4:78755170-78755189 None:intergenic 35.0%
GGAAATAATGGCTGAACAAA+CGG + chr3_4:78755171-78755190 None:intergenic 35.0%
! TTTTACAAAATGTAGGGGTC+GGG + chr3_4:78755197-78755216 None:intergenic 35.0%
GATATAGATCATAGCATAGC+AGG - chr3_4:78755235-78755254 Msa0525230:three_prime_UTR 35.0%
CAACCTATCAACTTCACTTA+TGG + chr3_4:78755324-78755343 None:intergenic 35.0%
AATAAAGGGAACAACACACA+AGG - chr3_4:78755666-78755685 Msa0525230:CDS 35.0%
ATAAAGGGAACAACACACAA+GGG - chr3_4:78755667-78755686 Msa0525230:CDS 35.0%
TTGGTTAAATTGTGTACCTC+AGG + chr3_4:78755736-78755755 None:intergenic 35.0%
CACTTGTGATGAAGATTGTT+GGG - chr3_4:78755826-78755845 Msa0525230:intron 35.0%
GATTTAGATAAAGCAAGGGT+TGG - chr3_4:78755870-78755889 Msa0525230:intron 35.0%
TCAAAGGTCTCATTCCATTT+CGG + chr3_4:78755930-78755949 None:intergenic 35.0%
!! CTTTGAGAATTTTCTCGGAA+GGG + chr3_4:78756043-78756062 None:intergenic 35.0%
!! AGGTCCTTTGAGAATTTTCT+CGG + chr3_4:78756048-78756067 None:intergenic 35.0%
AAGGACCTATAATTGACAGA+TGG - chr3_4:78756060-78756079 Msa0525230:intron 35.0%
AGGACCTATAATTGACAGAT+GGG - chr3_4:78756061-78756080 Msa0525230:intron 35.0%
TCAACCCATCTGTCAATTAT+AGG + chr3_4:78756068-78756087 None:intergenic 35.0%
AGAAAATGTCTATGGTCTCA+AGG - chr3_4:78756173-78756192 Msa0525230:intron 35.0%
!!! AGGAATACACATGCCATTTT+TGG - chr3_4:78756193-78756212 Msa0525230:CDS 35.0%
!!! GGAATACACATGCCATTTTT+GGG - chr3_4:78756194-78756213 Msa0525230:CDS 35.0%
!! ACATTTTTCGATCAGAGACA+AGG - chr3_4:78756227-78756246 Msa0525230:CDS 35.0%
ATTATGTACCTGGAAGATGT+TGG - chr3_4:78756327-78756346 Msa0525230:CDS 35.0%
TTATGTACCTGGAAGATGTT+GGG - chr3_4:78756328-78756347 Msa0525230:CDS 35.0%
!! TACTTTCTGTTGGCTTGTTT+GGG + chr3_4:78756442-78756461 None:intergenic 35.0%
CTCAAGAAAAAAGCCAATGA+AGG - chr3_4:78756482-78756501 Msa0525230:CDS 35.0%
AAACCGTCTTTCTTAAAAGC+CGG + chr3_4:78756551-78756570 None:intergenic 35.0%
CGAACAGTTATCAGTTTCAT+AGG - chr3_4:78756755-78756774 Msa0525230:CDS 35.0%
ACAGTTATCAGTTTCATAGG+TGG - chr3_4:78756758-78756777 Msa0525230:CDS 35.0%
TTTCATCAACCAAATTTCCC+AGG - chr3_4:78756860-78756879 Msa0525230:CDS 35.0%
!! CTTTCTTAATAGAAGCACCT+GGG + chr3_4:78756880-78756899 None:intergenic 35.0%
! TGTTGTACAATTTTGAGCAG+AGG - chr3_4:78756963-78756982 Msa0525230:CDS 35.0%
ATAACATTGCATCAGAAGGA+TGG + chr3_4:78757060-78757079 None:intergenic 35.0%
TCTGATAACATTGCATCAGA+AGG + chr3_4:78757064-78757083 None:intergenic 35.0%
GCAATGTTATCAGAAGAAGA+TGG - chr3_4:78757070-78757089 Msa0525230:CDS 35.0%
CAGTTGTTTAGATCCATTGA+TGG - chr3_4:78757109-78757128 Msa0525230:CDS 35.0%
TTGTTTAGATCCATTGATGG+TGG - chr3_4:78757112-78757131 Msa0525230:CDS 35.0%
!! TAACTTCATTTGGTGCTTGA+GGG + chr3_4:78757153-78757172 None:intergenic 35.0%
!! ATAACTTCATTTGGTGCTTG+AGG + chr3_4:78757154-78757173 None:intergenic 35.0%
!! ATTGAATTAGGCCTTGTTAG+TGG - chr3_4:78757172-78757191 Msa0525230:CDS 35.0%
! TGTTGTCTTTTCCACTAACA+AGG + chr3_4:78757186-78757205 None:intergenic 35.0%
ATCTTCAATGACAACTCCTT+TGG + chr3_4:78757361-78757380 None:intergenic 35.0%
CAGTTCAGGCAATATTAGAT+TGG - chr3_4:78757464-78757483 Msa0525230:CDS 35.0%
AAAAGGGAGAGTAAGAAAGA+TGG - chr3_4:78757592-78757611 Msa0525230:CDS 35.0%
GTTCATTCCAAGATGATGAT+AGG - chr3_4:78757694-78757713 Msa0525230:CDS 35.0%
CATCTTACCTATCATCATCT+TGG + chr3_4:78757704-78757723 None:intergenic 35.0%
!!! TTTTTAGGTGGTTTCTAAGG+TGG - chr3_4:78757789-78757808 Msa0525230:CDS 35.0%
!!! TTTTAGGTGGTTTCTAAGGT+GGG - chr3_4:78757790-78757809 Msa0525230:CDS 35.0%
ATGTATTCATCATCCACTAC+AGG + chr3_4:78758071-78758090 None:intergenic 35.0%
AGAATCAAAGCCATTGTATC+AGG + chr3_4:78758458-78758477 None:intergenic 35.0%
!! GATACAATGGCTTTGATTCT+TGG - chr3_4:78758458-78758477 Msa0525230:intron 35.0%
CTATGATAACAACCTTGTCT+TGG + chr3_4:78758553-78758572 None:intergenic 35.0%
TGATGAAATCATGTGGTACA+AGG - chr3_4:78758634-78758653 Msa0525230:five_prime_UTR 35.0%
GTTGCAAGCTGGATGTAATT+TGG - chr3_4:78755340-78755359 Msa0525230:three_prime_UTR 40.0%
TAAAGGGAACAACACACAAG+GGG - chr3_4:78755668-78755687 Msa0525230:CDS 40.0%
!! AGATTTCTAGCCCAAGTCAA+GGG - chr3_4:78755694-78755713 Msa0525230:CDS 40.0%
CAAGATACAACCCTTGACTT+GGG + chr3_4:78755707-78755726 None:intergenic 40.0%
ACAAGATACAACCCTTGACT+TGG + chr3_4:78755708-78755727 None:intergenic 40.0%
TTAAATTGTGTACCTCAGGC+CGG + chr3_4:78755732-78755751 None:intergenic 40.0%
CCAACAATCTTCATCACAAG+TGG + chr3_4:78755828-78755847 None:intergenic 40.0%
CCACTTGTGATGAAGATTGT+TGG - chr3_4:78755825-78755844 Msa0525230:intron 40.0%
TTGGACGAACCAGAATGATA+GGG - chr3_4:78755889-78755908 Msa0525230:intron 40.0%
!! TCATTCCATTTCGGGTTTGA+GGG + chr3_4:78755921-78755940 None:intergenic 40.0%
CAAAGGTCTCATTCCATTTC+GGG + chr3_4:78755929-78755948 None:intergenic 40.0%
CCAATTGGTGCAACTCTAAT+CGG - chr3_4:78756005-78756024 Msa0525230:intron 40.0%
!! CCTTTGAGAATTTTCTCGGA+AGG + chr3_4:78756044-78756063 None:intergenic 40.0%
CCTTCCGAGAAAATTCTCAA+AGG - chr3_4:78756041-78756060 Msa0525230:intron 40.0%
! GCAATTCTCTAGTGTCATTG+AGG - chr3_4:78756148-78756167 Msa0525230:intron 40.0%
CATCCATGGATACCAATATC+TGG - chr3_4:78756296-78756315 Msa0525230:CDS 40.0%
GTTCCAGATATTGGTATCCA+TGG + chr3_4:78756302-78756321 None:intergenic 40.0%
ATATCTTCCCAACATCTTCC+AGG + chr3_4:78756338-78756357 None:intergenic 40.0%
!! CTACTTTCTGTTGGCTTGTT+TGG + chr3_4:78756443-78756462 None:intergenic 40.0%
AGGGTGATACTACTTTCTGT+TGG + chr3_4:78756452-78756471 None:intergenic 40.0%
ACAGAAAGTAGTATCACCCT+AGG - chr3_4:78756452-78756471 Msa0525230:CDS 40.0%
TTTCTTAAAAGCCGGAACAG+AGG + chr3_4:78756543-78756562 None:intergenic 40.0%
!! GTTCCGGCTTTTAAGAAAGA+CGG - chr3_4:78756545-78756564 Msa0525230:CDS 40.0%
!!! CTATGCTTTTTCCACCATCA+GGG + chr3_4:78756649-78756668 None:intergenic 40.0%
!!! ACTATGCTTTTTCCACCATC+AGG + chr3_4:78756650-78756669 None:intergenic 40.0%
! GGTGGAAAAAGCATAGTTCA+AGG - chr3_4:78756653-78756672 Msa0525230:CDS 40.0%
TTTGCGATCCTTCAACATGA+TGG + chr3_4:78756733-78756752 None:intergenic 40.0%
!! ATAGAAGCACCTGGGAAATT+TGG + chr3_4:78756872-78756891 None:intergenic 40.0%
!! CCTTTCTTAATAGAAGCACC+TGG + chr3_4:78756881-78756900 None:intergenic 40.0%
CCAGGTGCTTCTATTAAGAA+AGG - chr3_4:78756878-78756897 Msa0525230:CDS 40.0%
GGTGCTTCTATTAAGAAAGG+TGG - chr3_4:78756881-78756900 Msa0525230:CDS 40.0%
TTGCAGTGAATATCATGCCA+CGG + chr3_4:78756917-78756936 None:intergenic 40.0%
GATATTCACTGCAAGCTAGA+AGG - chr3_4:78756923-78756942 Msa0525230:CDS 40.0%
TACAACACATCCCATGCAAT+AGG + chr3_4:78756950-78756969 None:intergenic 40.0%
! TGTACAATTTTGAGCAGAGG+TGG - chr3_4:78756966-78756985 Msa0525230:CDS 40.0%
! GTACAATTTTGAGCAGAGGT+GGG - chr3_4:78756967-78756986 Msa0525230:CDS 40.0%
GAATTGGGAACAGGAATTGT+TGG + chr3_4:78757015-78757034 None:intergenic 40.0%
TATTTCCTAGGGAGTTCCTA+TGG - chr3_4:78757283-78757302 Msa0525230:CDS 40.0%
ATCAGTTGAATGCCAACCAT+AGG + chr3_4:78757302-78757321 None:intergenic 40.0%
TGCATTGCATCTCATACCAA+AGG - chr3_4:78757342-78757361 Msa0525230:CDS 40.0%
!! AGAGAGGTTTGTTGTGTATG+TGG - chr3_4:78757402-78757421 Msa0525230:CDS 40.0%
TGTATGTGGTGATTCCAATG+TGG - chr3_4:78757416-78757435 Msa0525230:CDS 40.0%
CTCAGTATACATCATCTCCA+TGG + chr3_4:78757500-78757519 None:intergenic 40.0%
GCTCTATGATAATCACTGTC+AGG + chr3_4:78757646-78757665 None:intergenic 40.0%
!! TTTAGGTGGTTTCTAAGGTG+GGG - chr3_4:78757791-78757810 Msa0525230:CDS 40.0%
AACCAAAGATCAATGGATGG+TGG - chr3_4:78758113-78758132 Msa0525230:intron 40.0%
TTCCACCATCCATTGATCTT+TGG + chr3_4:78758118-78758137 None:intergenic 40.0%
AAGAGACACAGAGATTGCAA+TGG - chr3_4:78758136-78758155 Msa0525230:intron 40.0%
AGAGACACAGAGATTGCAAT+GGG - chr3_4:78758137-78758156 Msa0525230:intron 40.0%
AGACCACAAGGTCAAGTATA+TGG - chr3_4:78758206-78758225 Msa0525230:intron 40.0%
AAGCCATATACTTGACCTTG+TGG + chr3_4:78758212-78758231 None:intergenic 40.0%
AAGGTCAAGTATATGGCTTC+AGG - chr3_4:78758213-78758232 Msa0525230:intron 40.0%
TTTACGCATTCCACACTTTC+AGG + chr3_4:78758290-78758309 None:intergenic 40.0%
CTTCAACAGGATACCGTAAA+AGG + chr3_4:78758388-78758407 None:intergenic 40.0%
TTTACGGTATCCTGTTGAAG+TGG - chr3_4:78758388-78758407 Msa0525230:intron 40.0%
TTACGGTATCCTGTTGAAGT+GGG - chr3_4:78758389-78758408 Msa0525230:intron 40.0%
GAAGTGTGACATCACTTTCA+GGG - chr3_4:78758420-78758439 Msa0525230:intron 40.0%
TAGGACTAGGTGGTAAGTAT+GGG + chr3_4:78758506-78758525 None:intergenic 40.0%
ATAGTGTATGAACGAGCAAG+TGG + chr3_4:78758678-78758697 None:intergenic 40.0%
AAAATGCCTCAGCTGCTACA+TGG - chr3_4:78755284-78755303 Msa0525230:intron 45.0%
AAATGCCTCAGCTGCTACAT+GGG - chr3_4:78755285-78755304 Msa0525230:intron 45.0%
!! GAAGTTGATAGGTTGCAAGC+TGG - chr3_4:78755329-78755348 Msa0525230:three_prime_UTR 45.0%
!! GAGATTTCTAGCCCAAGTCA+AGG - chr3_4:78755693-78755712 Msa0525230:CDS 45.0%
TCAAGGGTTGTATCTTGTGC+CGG - chr3_4:78755710-78755729 Msa0525230:CDS 45.0%
GTTGGACGAACCAGAATGAT+AGG - chr3_4:78755888-78755907 Msa0525230:intron 45.0%
! GGGTTGATTCCCTATCATTC+TGG + chr3_4:78755901-78755920 None:intergenic 45.0%
ATCAACCCTCAAACCCGAAA+TGG - chr3_4:78755913-78755932 Msa0525230:intron 45.0%
!! CTCATTCCATTTCGGGTTTG+AGG + chr3_4:78755922-78755941 None:intergenic 45.0%
CCGATTAGAGTTGCACCAAT+TGG + chr3_4:78756008-78756027 None:intergenic 45.0%
!!! ATTTTAGAACCGCCTGGTAC+AGG + chr3_4:78756116-78756135 None:intergenic 45.0%
!!! ACACGAATTTTAGAACCGCC+TGG + chr3_4:78756122-78756141 None:intergenic 45.0%
GTACGCTGAACTCCCAAAAA+TGG + chr3_4:78756209-78756228 None:intergenic 45.0%
TTCGATCAGAGACAAGGTTG+TGG - chr3_4:78756233-78756252 Msa0525230:CDS 45.0%
TCCATGGATGAACACTGTCA+GGG + chr3_4:78756286-78756305 None:intergenic 45.0%
ATCCATGGATGAACACTGTC+AGG + chr3_4:78756287-78756306 None:intergenic 45.0%
CTTGTTTGGGTCCCTAATCA+AGG + chr3_4:78756429-78756448 None:intergenic 45.0%
!! GTTGATGGCCATCATGTTGA+AGG - chr3_4:78756722-78756741 Msa0525230:CDS 45.0%
!! GGTGGTATTGATCTGTGTGA+TGG - chr3_4:78756776-78756795 Msa0525230:CDS 45.0%
ATATCATGCCACGGTTCTCT+AGG + chr3_4:78756908-78756927 None:intergenic 45.0%
AGCTAGAAGGACCTATTGCA+TGG - chr3_4:78756936-78756955 Msa0525230:CDS 45.0%
GCTAGAAGGACCTATTGCAT+GGG - chr3_4:78756937-78756956 Msa0525230:CDS 45.0%
CAAGCTCTTGAATTGGGAAC+AGG + chr3_4:78757024-78757043 None:intergenic 45.0%
CAGAAGAAGATGGCGAAACT+TGG - chr3_4:78757080-78757099 Msa0525230:CDS 45.0%
AGAAACAGCACCACCATCAA+TGG + chr3_4:78757125-78757144 None:intergenic 45.0%
GCAAAATTGAAGCTGGAGAG+AGG - chr3_4:78757386-78757405 Msa0525230:CDS 45.0%
AGATTGGCAAAGAAGGACCA+TGG - chr3_4:78757480-78757499 Msa0525230:CDS 45.0%
TGATAATCACTGTCAGGCTC+TGG + chr3_4:78757640-78757659 None:intergenic 45.0%
!! TTAGGTGGTTTCTAAGGTGG+GGG - chr3_4:78757792-78757811 Msa0525230:CDS 45.0%
GGCATTTCCCGTAAGAAGAT+TGG - chr3_4:78757882-78757901 Msa0525230:CDS 45.0%
GATGTGGATGCTAGATGATG+AGG + chr3_4:78758173-78758192 None:intergenic 45.0%
CATCTAGCATCCACATCCAA+TGG - chr3_4:78758176-78758195 Msa0525230:CDS 45.0%
TCTTTGTGAGCCATTGGATG+TGG + chr3_4:78758189-78758208 None:intergenic 45.0%
TTGTGGTCTTTGTGAGCCAT+TGG + chr3_4:78758195-78758214 None:intergenic 45.0%
AATGGCTCACAAAGACCACA+AGG - chr3_4:78758194-78758213 Msa0525230:CDS 45.0%
!! ATGGCTTCAGGAGAGCATTA+TGG - chr3_4:78758225-78758244 Msa0525230:intron 45.0%
! TTTTGACGAGCCTGAAAGTG+TGG - chr3_4:78758277-78758296 Msa0525230:intron 45.0%
!! TTTTGAACCGTGTTGCTGAG+AGG - chr3_4:78758312-78758331 Msa0525230:intron 45.0%
TCCAATTCCTCTCAGCAACA+CGG + chr3_4:78758322-78758341 None:intergenic 45.0%
! GGAAGTGTGACATCACTTTC+AGG - chr3_4:78758419-78758438 Msa0525230:intron 45.0%
CTAGGACTAGGTGGTAAGTA+TGG + chr3_4:78758507-78758526 None:intergenic 45.0%
!!! AAAAAATTGAATTTTAATTT+AGG - chr3_4:78755213-78755232 Msa0525230:three_prime_UTR 5.0%
GCTGCTACATGGGACACTTA+AGG - chr3_4:78755295-78755314 Msa0525230:intron 50.0%
GAAGATCATCGTCCTGTACC+AGG - chr3_4:78756101-78756120 Msa0525230:intron 50.0%
TCCCTGACAGTGTTCATCCA+TGG - chr3_4:78756282-78756301 Msa0525230:CDS 50.0%
TTATGTCCGCGTAACCCTGA+TGG - chr3_4:78756632-78756651 Msa0525230:CDS 50.0%
TTTCCACCATCAGGGTTACG+CGG + chr3_4:78756641-78756660 None:intergenic 50.0%
CAGAGGTGGGAAAAGCAAGT+CGG - chr3_4:78756980-78756999 Msa0525230:CDS 50.0%
AGAGGTGGGAAAAGCAAGTC+GGG - chr3_4:78756981-78757000 Msa0525230:CDS 50.0%
TCCTAGGGAGTTCCTATGGT+TGG - chr3_4:78757287-78757306 Msa0525230:CDS 50.0%
GTGATTCCAATGTGGCCAGA+AGG - chr3_4:78757424-78757443 Msa0525230:CDS 50.0%
GGTATACCTTCTGGCCACAT+TGG + chr3_4:78757433-78757452 None:intergenic 50.0%
GCACTCTCAGGTATACCTTC+TGG + chr3_4:78757442-78757461 None:intergenic 50.0%
! ACCTGAGAGTGCATCAGTTC+AGG - chr3_4:78757450-78757469 Msa0525230:CDS 50.0%
!! AGGTGGGGGAGTGTTTCATA+TGG - chr3_4:78757806-78757825 Msa0525230:CDS 50.0%
! ACCGTGTTGCTGAGAGGAAT+TGG - chr3_4:78758318-78758337 Msa0525230:intron 50.0%
CCATCTTCACCCACTTCAAC+AGG + chr3_4:78758401-78758420 None:intergenic 50.0%
CCTGTTGAAGTGGGTGAAGA+TGG - chr3_4:78758398-78758417 Msa0525230:intron 50.0%
AGGTGGTAAGTATGGGAGGA+AGG + chr3_4:78758499-78758518 None:intergenic 50.0%
GACTAGGTGGTAAGTATGGG+AGG + chr3_4:78758503-78758522 None:intergenic 50.0%
TGTGCTAGCTAGCTAGGACT+AGG + chr3_4:78758519-78758538 None:intergenic 50.0%
! AAGCACTGTGCTAGCTAGCT+AGG + chr3_4:78758525-78758544 None:intergenic 50.0%
CTAGCTAGCACAGTGCTTGA+CGG - chr3_4:78758527-78758546 Msa0525230:CDS 50.0%
GGGGTCGGGAGAGGAAATAA+TGG + chr3_4:78755183-78755202 None:intergenic 55.0%
CAAAATGTAGGGGTCGGGAG+AGG + chr3_4:78755192-78755211 None:intergenic 55.0%
AGTGTCCCATGTAGCAGCTG+AGG + chr3_4:78755293-78755312 None:intergenic 55.0%
! TTGTATCTTGTGCCGGCCTG+AGG - chr3_4:78755717-78755736 Msa0525230:CDS 55.0%
GATCATCGTCCTGTACCAGG+CGG - chr3_4:78756104-78756123 Msa0525230:intron 55.0%
TGTCAGGGACATGAGCGTCT+TGG + chr3_4:78756271-78756290 None:intergenic 55.0%
GGACGACAGAACCTCTGTTC+CGG - chr3_4:78756529-78756548 Msa0525230:CDS 55.0%
AAGGTGGTCCTAGAGAACCG+TGG - chr3_4:78756897-78756916 Msa0525230:CDS 55.0%
GCCAACCATAGGAACTCCCT+AGG + chr3_4:78757291-78757310 None:intergenic 55.0%
GCCTGAACTGATGCACTCTC+AGG + chr3_4:78757454-78757473 None:intergenic 55.0%
GCTAGCTAGCTAGGACTAGG+TGG + chr3_4:78758516-78758535 None:intergenic 55.0%
AGTGCTTGACGGCCAAGACA+AGG - chr3_4:78758538-78758557 Msa0525230:CDS 55.0%
TGTCCGCGTAACCCTGATGG+TGG - chr3_4:78756635-78756654 Msa0525230:CDS 60.0%
! TCAGGCTCTGGTTGCTCTGG+AGG + chr3_4:78757628-78757647 None:intergenic 60.0%
! CTGTCAGGCTCTGGTTGCTC+TGG + chr3_4:78757631-78757650 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78755154 78758740 78755154 ID=Msa0525230;Name=Msa0525230
chr3_4 mRNA 78755154 78758740 78755154 ID=Msa0525230-mRNA-1;Parent=Msa0525230;Name=Msa0525230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=133|1|1|1|0.75|0.6|5|188|825
chr3_4 exon 78755154 78755293 78755154 ID=Msa0525230-mRNA-1:exon:23436;Parent=Msa0525230-mRNA-1
chr3_4 exon 78755326 78755819 78755326 ID=Msa0525230-mRNA-1:exon:23435;Parent=Msa0525230-mRNA-1
chr3_4 exon 78756179 78758054 78756179 ID=Msa0525230-mRNA-1:exon:23434;Parent=Msa0525230-mRNA-1
chr3_4 exon 78758156 78758221 78758156 ID=Msa0525230-mRNA-1:exon:23433;Parent=Msa0525230-mRNA-1
chr3_4 exon 78758518 78758740 78758518 ID=Msa0525230-mRNA-1:exon:23432;Parent=Msa0525230-mRNA-1
chr3_4 five_prime_UTR 78758608 78758740 78758608 ID=Msa0525230-mRNA-1:five_prime_utr;Parent=Msa0525230-mRNA-1
chr3_4 CDS 78758518 78758607 78758518 ID=Msa0525230-mRNA-1:cds;Parent=Msa0525230-mRNA-1
chr3_4 CDS 78758156 78758221 78758156 ID=Msa0525230-mRNA-1:cds;Parent=Msa0525230-mRNA-1
chr3_4 CDS 78756179 78758054 78756179 ID=Msa0525230-mRNA-1:cds;Parent=Msa0525230-mRNA-1
chr3_4 CDS 78755374 78755819 78755374 ID=Msa0525230-mRNA-1:cds;Parent=Msa0525230-mRNA-1
chr3_4 three_prime_UTR 78755326 78755373 78755326 ID=Msa0525230-mRNA-1:three_prime_utr;Parent=Msa0525230-mRNA-1
chr3_4 three_prime_UTR 78755154 78755293 78755154 ID=Msa0525230-mRNA-1:three_prime_utr;Parent=Msa0525230-mRNA-1
Gene Sequence

>Msa0525230

ATGCCTCAGCTGCTACATGGGACACTTAAGGTAACCATAAGTGAAGTTGATAGGTTGCAAGCTGGATGTAATTTGGATTTCTGTCGAAAGGGAACAACACACAAGGGGAAGAGATTTCTAGCCCAAGTCAAGGGTTGTATCTTGTGCCGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGATAAAGCAAGGGTTGGACGAACCAGAATGATAGGGAATCAACCCTCAAACCCGAAATGGAATGAGACCTTTGAAATCTATTGTGCTCATTACATATCAAATATTGTATTCACTGTCAAAGATGATAATCCAATTGGTGCAACTCTAATCGGAAGAGCTTATATCCCTTCCGAGAAAATTCTCAAAGGACCTATAATTGACAGATGGGTTGAGATATTAGACGAAGAAGATCATCGTCCTGTACCAGGCGGTTCTAAAATTCGTGTCAGCATGCAATTCTCTAGTGTCATTGAGGATAGAAAATGTCTATGGTCTCAAGGAATACACATGCCATTTTTGGGAGTTCAGCGTACATTTTTCGATCAGAGACAAGGTTGTGGTGTTACTTTATACCAAGACGCTCATGTCCCTGACAGTGTTCATCCATGGATACCAATATCTGGAACAAAATATTATGTACCTGGAAGATGTTGGGAAGATATTTACAATGCCATTATGAATGCTAAAGTCTTTATTTACATAACTGGTTGGTCTGTTCATACAGAAATAACCTTGATTAGGGACCCAAACAAGCCAACAGAAAGTAGTATCACCCTAGGAGAAATACTCAAGAAAAAAGCCAATGAAGGTGTTAATGTTCTTGTGCTTGTTTGGGACGACAGAACCTCTGTTCCGGCTTTTAAGAAAGACGGTTTGATGGGAACACATGACCAAGAAACTGCAGAGTATTTTAAAAACACAAAGGTACGTTGTGTTTTATGTCCGCGTAACCCTGATGGTGGAAAAAGCATAGTTCAAGGTTTTGAAACTTCAACTATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGCCATCATGTTGAAGGATCGCAAAAGCGAACAGTTATCAGTTTCATAGGTGGTATTGATCTGTGTGATGGAAGATATGATACAATGGAACATCCTTTGTTTTCAACTTTGAACACAATCCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAAGAAAGGTGGTCCTAGAGAACCGTGGCATGATATTCACTGCAAGCTAGAAGGACCTATTGCATGGGATGTGTTGTACAATTTTGAGCAGAGGTGGGAAAAGCAAGTCGGGAAGCAATTCCAACAATTCCTGTTCCCAATTCAAGAGCTTGATAGAATTCTAATCCATCCTTCTGATGCAATGTTATCAGAAGAAGATGGCGAAACTTGGAGCGTTCAGTTGTTTAGATCCATTGATGGTGGTGCTGTTTCTAACTTCCCTCAAGCACCAAATGAAGTTATTGAATTAGGCCTTGTTAGTGGAAAAGACAACATCATTGATAGAAGCATTCAAGATGCCTACATAAATGCTATACGAAGAGCAAAAAACTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCCTATGGTTGGCATTCAACTGATATTAAAGTTGAGGATATTGGTGCATTGCATCTCATACCAAAGGAGTTGTCATTGAAGATTGTTAGCAAAATTGAAGCTGGAGAGAGGTTTGTTGTGTATGTGGTGATTCCAATGTGGCCAGAAGGTATACCTGAGAGTGCATCAGTTCAGGCAATATTAGATTGGCAAAGAAGGACCATGGAGATGATGTATACTGAGATTGCTGATGCCATAAAAAAGAAGAATGTTGAAGCACACCCTCGTGATTATTTGACATTTTATTGTCTTGGTAAAAGGGAGAGTAAGAAAGATGGAGAGTACACTCCTCCAGAGCAACCAGAGCCTGACAGTGATTATCATAGAGCACAAAAGTCTAGAAGATTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATAGTGATTGGTTCAGCCAACATAAACCAAAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGTGCATTTCAACCTCATCATCTAGCATCCACATCCAATGGCTCACAAAGACCACAAGGTCAAGTATATGGCTTCAGGAGAGCATTATGGTATGAACATATTGGAGACAACAGTGATGATTTTGACGAGCCTGAAAGTGTGGAATGCGTAAAACTTTTGAACCGTGTTGCTGAGAGGAATTGGAAATTATACTGTGATGATGCATTAGATGAAAGTGTAAATACTCACCTTTTACGGTATCCTGTTGAAGTGGGTGAAGATGGAAGTGTGACATCACTTTCAGGGATGCAATATTTTCCTGATACAATGGCTTTGATTCTTGGTTCAAAATCTGATTACCTTCCTCCCATACTTACCACCTAG
Protein sequence

>Msa0525230

MPQLLHGTLKVTISEVDRLQAGCNLDFCRKGTTHKGKRFLAQVKGCILCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSNPKWNETFEIYCAHYISNIVFTVKDDNPIGATLIGRAYIPSEKILKGPIIDRWVEILDEEDHRPVPGGSKIRVSMQFSSVIEDRKCLWSQGIHMPFLGVQRTFFDQRQGCGVTLYQDAHVPDSVHPWIPISGTKYYVPGRCWEDIYNAIMNAKVFIYITGWSVHTEITLIRDPNKPTESSITLGEILKKKANEGVNVLVLVWDDRTSVPAFKKDGLMGTHDQETAEYFKNTKVRCVLCPRNPDGGKSIVQGFETSTMFTHHQKTIVVDGHHVEGSQKRTVISFIGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKQFQQFLFPIQELDRILIHPSDAMLSEEDGETWSVQLFRSIDGGAVSNFPQAPNEVIELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWHSTDIKVEDIGALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYTEIADAIKKKNVEAHPRDYLTFYCLGKRESKKDGEYTPPEQPEPDSDYHRAQKSRRFMIYVHSKMMIVDDEYIVIGSANINQRSMDGGRDTEIAMGAFQPHHLASTSNGSQRPQGQVYGFRRALWYEHIGDNSDDFDEPESVECVKLLNRVAERNWKLYCDDALDESVNTHLLRYPVEVGEDGSVTSLSGMQYFPDTMALILGSKSDYLPPILTT*