Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184330 | sp|Q08062|MDHC_MAIZE | 76.299 | 308 | 47 | 2 | 1 | 282 | 24 | 331 | 8.01e-160 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184330 | A0A396GFU4 | 86.364 | 308 | 16 | 3 | 1 | 282 | 1 | 308 | 7.91e-179 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009760 | Msa1184330 | 0.801118 | 1.046986e-48 | -8.615850e-47 |
| Msa0049790 | Msa1184330 | 0.809099 | 2.236735e-50 | -8.615850e-47 |
| Msa0071880 | Msa1184330 | 0.827284 | 1.702833e-54 | -8.615850e-47 |
| Msa0081520 | Msa1184330 | 0.869257 | 3.546145e-66 | -8.615850e-47 |
| Msa0093850 | Msa1184330 | 0.802018 | 6.844049e-49 | -8.615850e-47 |
| Msa0094850 | Msa1184330 | 0.816523 | 5.292209e-52 | -8.615850e-47 |
| Msa0118570 | Msa1184330 | 0.814011 | 1.913973e-51 | -8.615850e-47 |
| Msa0614000 | Msa1184330 | 0.802519 | 5.398137e-49 | -8.615850e-47 |
| Msa0616510 | Msa1184330 | 0.846738 | 1.798382e-59 | -8.615850e-47 |
| Msa0623330 | Msa1184330 | 0.800346 | 1.504920e-48 | -8.615850e-47 |
| Msa0626450 | Msa1184330 | 0.819406 | 1.180988e-52 | -8.615850e-47 |
| Msa0626490 | Msa1184330 | 0.816612 | 5.054562e-52 | -8.615850e-47 |
| Msa0628670 | Msa1184330 | 0.800966 | 1.124502e-48 | -8.615850e-47 |
| Msa0638480 | Msa1184330 | 0.831765 | 1.386666e-55 | -8.615850e-47 |
| Msa0650660 | Msa1184330 | 0.801450 | 8.951264e-49 | -8.615850e-47 |
| Msa0664600 | Msa1184330 | 0.812945 | 3.284483e-51 | -8.615850e-47 |
| Msa0697160 | Msa1184330 | 0.800518 | 1.387816e-48 | -8.615850e-47 |
| Msa0699840 | Msa1184330 | 0.862001 | 6.902728e-64 | -8.615850e-47 |
| Msa0701700 | Msa1184330 | 0.809398 | 1.929654e-50 | -8.615850e-47 |
| Msa0726690 | Msa1184330 | 0.801820 | 7.516206e-49 | -8.615850e-47 |
| Msa0740100 | Msa1184330 | 0.843433 | 1.405159e-58 | -8.615850e-47 |
| Msa0742650 | Msa1184330 | 0.818962 | 1.490603e-52 | -8.615850e-47 |
| Msa0742740 | Msa1184330 | 0.845126 | 4.931414e-59 | -8.615850e-47 |
| Msa0765240 | Msa1184330 | 0.805607 | 1.230522e-49 | -8.615850e-47 |
| Msa0768990 | Msa1184330 | 0.813440 | 2.557445e-51 | -8.615850e-47 |
| Msa0780270 | Msa1184330 | 0.812619 | 3.870944e-51 | -8.615850e-47 |
| Msa0782740 | Msa1184330 | 0.806183 | 9.311052e-50 | -8.615850e-47 |
| Msa0782760 | Msa1184330 | 0.850287 | 1.871925e-60 | -8.615850e-47 |
| Msa0796160 | Msa1184330 | 0.871803 | 5.172857e-67 | -8.615850e-47 |
| Msa0819420 | Msa1184330 | 0.802049 | 6.746321e-49 | -8.615850e-47 |
| Msa0820390 | Msa1184330 | 0.849423 | 3.264025e-60 | -8.615850e-47 |
| Msa0823820 | Msa1184330 | 0.844525 | 7.163566e-59 | -8.615850e-47 |
| Msa0833760 | Msa1184330 | 0.855319 | 6.832549e-62 | -8.615850e-47 |
| Msa0129940 | Msa1184330 | 0.825631 | 4.220169e-54 | -8.615850e-47 |
| Msa0134610 | Msa1184330 | 0.803113 | 4.070011e-49 | -8.615850e-47 |
| Msa0164400 | Msa1184330 | 0.834007 | 3.843964e-56 | -8.615850e-47 |
| Msa0173890 | Msa1184330 | 0.862455 | 5.006007e-64 | -8.615850e-47 |
| Msa0174450 | Msa1184330 | 0.814699 | 1.348916e-51 | -8.615850e-47 |
| Msa0194820 | Msa1184330 | 0.849933 | 2.352735e-60 | -8.615850e-47 |
| Msa0194840 | Msa1184330 | 0.852556 | 4.272608e-61 | -8.615850e-47 |
| Msa0195630 | Msa1184330 | 0.801095 | 1.058459e-48 | -8.615850e-47 |
| Msa0206840 | Msa1184330 | 0.847248 | 1.303715e-59 | -8.615850e-47 |
| Msa0221000 | Msa1184330 | 0.821709 | 3.494577e-53 | -8.615850e-47 |
| Msa0225100 | Msa1184330 | 0.802893 | 4.520305e-49 | -8.615850e-47 |
| Msa0367830 | Msa1184330 | 0.831496 | 1.615335e-55 | -8.615850e-47 |
| Msa0371170 | Msa1184330 | 0.837747 | 4.332113e-57 | -8.615850e-47 |
| Msa0378720 | Msa1184330 | 0.830276 | 3.216465e-55 | -8.615850e-47 |
| Msa0382550 | Msa1184330 | 0.820492 | 6.664717e-53 | -8.615850e-47 |
| Msa0388770 | Msa1184330 | 0.876769 | 1.072824e-68 | -8.615850e-47 |
| Msa0393150 | Msa1184330 | 0.804952 | 1.687457e-49 | -8.615850e-47 |
| Msa0393340 | Msa1184330 | 0.833494 | 5.164545e-56 | -8.615850e-47 |
| Msa0393440 | Msa1184330 | 0.800619 | 1.324087e-48 | -8.615850e-47 |
| Msa0405710 | Msa1184330 | 0.800971 | 1.121840e-48 | -8.615850e-47 |
| Msa0415610 | Msa1184330 | 0.800231 | 1.587908e-48 | -8.615850e-47 |
| Msa0428370 | Msa1184330 | 0.807666 | 4.522634e-50 | -8.615850e-47 |
| Msa0430260 | Msa1184330 | 0.812169 | 4.852681e-51 | -8.615850e-47 |
| Msa0432380 | Msa1184330 | 0.827203 | 1.780937e-54 | -8.615850e-47 |
| Msa0435550 | Msa1184330 | 0.800012 | 1.759782e-48 | -8.615850e-47 |
| Msa0441290 | Msa1184330 | 0.815056 | 1.124236e-51 | -8.615850e-47 |
| Msa0447370 | Msa1184330 | 0.812875 | 3.402116e-51 | -8.615850e-47 |
| Msa0462070 | Msa1184330 | 0.839499 | 1.527408e-57 | -8.615850e-47 |
| Msa0465400 | Msa1184330 | 0.831461 | 1.647300e-55 | -8.615850e-47 |
| Msa0474730 | Msa1184330 | 0.829205 | 5.862579e-55 | -8.615850e-47 |
| Msa0475790 | Msa1184330 | 0.818165 | 2.259724e-52 | -8.615850e-47 |
| Msa0479450 | Msa1184330 | 0.802111 | 6.550153e-49 | -8.615850e-47 |
| Msa1020630 | Msa1184330 | 0.872460 | 3.127945e-67 | -8.615850e-47 |
| Msa1023290 | Msa1184330 | 0.810421 | 1.162225e-50 | -8.615850e-47 |
| Msa1031930 | Msa1184330 | 0.851408 | 9.047411e-61 | -8.615850e-47 |
| Msa1071770 | Msa1184330 | 0.838423 | 2.902109e-57 | -8.615850e-47 |
| Msa0249540 | Msa1184330 | 0.841026 | 6.098988e-58 | -8.615850e-47 |
| Msa0265850 | Msa1184330 | 0.820981 | 5.146741e-53 | -8.615850e-47 |
| Msa0287740 | Msa1184330 | 0.805239 | 1.469660e-49 | -8.615850e-47 |
| Msa0297790 | Msa1184330 | 0.803780 | 2.961088e-49 | -8.615850e-47 |
| Msa0300270 | Msa1184330 | 0.833016 | 6.793808e-56 | -8.615850e-47 |
| Msa0300320 | Msa1184330 | 0.835778 | 1.376501e-56 | -8.615850e-47 |
| Msa0307270 | Msa1184330 | 0.802662 | 5.043603e-49 | -8.615850e-47 |
| Msa0326590 | Msa1184330 | 0.844286 | 8.307829e-59 | -8.615850e-47 |
| Msa0335800 | Msa1184330 | 0.830321 | 3.137315e-55 | -8.615850e-47 |
| Msa0337540 | Msa1184330 | 0.807182 | 5.727753e-50 | -8.615850e-47 |
| Msa0337700 | Msa1184330 | 0.822908 | 1.841486e-53 | -8.615850e-47 |
| Msa0339490 | Msa1184330 | 0.800004 | 1.766379e-48 | -8.615850e-47 |
| Msa0341690 | Msa1184330 | 0.806062 | 9.872239e-50 | -8.615850e-47 |
| Msa0346060 | Msa1184330 | 0.807240 | 5.568755e-50 | -8.615850e-47 |
| Msa0361080 | Msa1184330 | 0.826809 | 2.212143e-54 | -8.615850e-47 |
| Msa1113800 | Msa1184330 | 0.868096 | 8.412453e-66 | -8.615850e-47 |
| Msa1118600 | Msa1184330 | 0.809449 | 1.881815e-50 | -8.615850e-47 |
| Msa1132700 | Msa1184330 | 0.857206 | 1.911696e-62 | -8.615850e-47 |
| Msa1150820 | Msa1184330 | 0.856714 | 2.669838e-62 | -8.615850e-47 |
| Msa1158830 | Msa1184330 | 0.838571 | 2.657300e-57 | -8.615850e-47 |
| Msa1160500 | Msa1184330 | 0.863458 | 2.454886e-64 | -8.615850e-47 |
| Msa1181190 | Msa1184330 | 0.808229 | 3.432158e-50 | -8.615850e-47 |
| Msa1184330 | Msa1208160 | 0.807909 | 4.014453e-50 | -8.615850e-47 |
| Msa1184330 | Msa1227940 | 0.974662 | 1.493183e-138 | -8.615850e-47 |
| Msa1184330 | Msa1252200 | 0.806016 | 1.009207e-49 | -8.615850e-47 |
| Msa1184330 | Msa1271040 | 0.841587 | 4.340761e-58 | -8.615850e-47 |
| Msa1184330 | Msa1284120 | 0.800277 | 1.553919e-48 | -8.615850e-47 |
| Msa1184330 | Msa1308140 | 0.842511 | 2.473625e-58 | -8.615850e-47 |
| Msa1184330 | Msa1341890 | 0.845669 | 3.515788e-59 | -8.615850e-47 |
| Msa1184330 | Msa1351780 | 0.813144 | 2.969195e-51 | -8.615850e-47 |
| Msa1184330 | Msa1356830 | 0.858589 | 7.425022e-63 | -8.615850e-47 |
| Msa1184330 | Msa1429840 | 0.807335 | 5.314672e-50 | -8.615850e-47 |
| Msa1184330 | Msa1432500 | 0.805332 | 1.404885e-49 | -8.615850e-47 |
| Msa1184330 | Msa1433810 | 0.808774 | 2.625819e-50 | -8.615850e-47 |
| Msa1184330 | Msa1437940 | 0.853712 | 1.993003e-61 | -8.615850e-47 |
| Msa1184330 | Msa1440960 | 0.807368 | 5.229549e-50 | -8.615850e-47 |
| Msa1184330 | Msa1445190 | 0.833566 | 4.954196e-56 | -8.615850e-47 |
| Msa1184330 | Msa1460390 | 0.802818 | 4.683895e-49 | -8.615850e-47 |
| Msa1184330 | Msa1465010 | 0.817963 | 2.511111e-52 | -8.615850e-47 |
| Msa0488790 | Msa1184330 | 0.824947 | 6.124727e-54 | -8.615850e-47 |
| Msa0511260 | Msa1184330 | 0.839069 | 1.975001e-57 | -8.615850e-47 |
| Msa0513160 | Msa1184330 | 0.834330 | 3.190086e-56 | -8.615850e-47 |
| Msa0523190 | Msa1184330 | 0.800952 | 1.132074e-48 | -8.615850e-47 |
| Msa0525230 | Msa1184330 | 0.819479 | 1.136695e-52 | -8.615850e-47 |
| Msa0562620 | Msa1184330 | 0.813631 | 2.321152e-51 | -8.615850e-47 |
| Msa0573380 | Msa1184330 | 0.817599 | 3.033413e-52 | -8.615850e-47 |
| Msa0579330 | Msa1184330 | 0.807394 | 5.164689e-50 | -8.615850e-47 |
| Msa0580440 | Msa1184330 | 0.857188 | 1.935146e-62 | -8.615850e-47 |
| Msa0589510 | Msa1184330 | 0.802640 | 5.096674e-49 | -8.615850e-47 |
| Msa0861510 | Msa1184330 | 0.801572 | 8.452164e-49 | -8.615850e-47 |
| Msa0861600 | Msa1184330 | 0.803752 | 2.999890e-49 | -8.615850e-47 |
| Msa0863010 | Msa1184330 | 0.841357 | 4.990679e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184330 | MtrunA17_Chr8g0334691 | 86.364 | 308 | 16 | 3 | 1 | 282 | 1 | 308 | 0.0 | 504 |
| Msa1184330 | MtrunA17_Chr1g0167651 | 75.649 | 308 | 49 | 3 | 1 | 282 | 24 | 331 | 1.89e-158 | 444 |
| Msa1184330 | MtrunA17_Chr1g0187751 | 74.675 | 308 | 52 | 2 | 1 | 282 | 24 | 331 | 1.28e-156 | 439 |
| Msa1184330 | MtrunA17_Chr1g0197371 | 38.284 | 303 | 153 | 5 | 2 | 275 | 114 | 411 | 4.04e-59 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184330 | AT1G04410.1 | 73.377 | 308 | 56 | 2 | 1 | 282 | 24 | 331 | 4.77e-152 | 428 |
| Msa1184330 | AT5G43330.1 | 73.377 | 308 | 56 | 3 | 1 | 282 | 24 | 331 | 1.36e-150 | 424 |
| Msa1184330 | AT5G56720.1 | 69.156 | 308 | 69 | 2 | 1 | 282 | 63 | 370 | 5.42e-146 | 414 |
| Msa1184330 | AT5G58330.3 | 39.274 | 303 | 150 | 4 | 2 | 275 | 10 | 307 | 1.14e-63 | 203 |
| Msa1184330 | AT5G58330.2 | 39.274 | 303 | 150 | 4 | 2 | 275 | 118 | 415 | 1.31e-62 | 204 |
| Msa1184330 | AT5G58330.1 | 39.274 | 303 | 150 | 4 | 2 | 275 | 119 | 416 | 1.38e-62 | 204 |
Find 103 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATTACAGGTTGATT+TGG | 0.201276 | 8_1:+19979461 | None:intergenic |
| GCTTTATTTGCAATGTAATA+TGG | 0.205119 | 8_1:+19979793 | None:intergenic |
| CATATTCGTGATTGGGTTCT+AGG | 0.208668 | 8_1:-19978280 | Msa1184330:CDS |
| TTAAGTTGACACCGTATATT+TGG | 0.219456 | 8_1:-19977812 | Msa1184330:three_prime_UTR |
| TCATCTCCTTTGCAACAATT+AGG | 0.226762 | 8_1:+19977527 | None:intergenic |
| TTAATCAAATCAAAATTAAA+AGG | 0.238443 | 8_1:+19979544 | None:intergenic |
| GATTAAAACACAGGACAAAT+TGG | 0.265846 | 8_1:-19979527 | Msa1184330:five_prime_UTR |
| CCAGCATTAGAGGCACTTAA+AGG | 0.277108 | 8_1:-19979422 | Msa1184330:CDS |
| ATTAGAGCATTTGTATTTGC+TGG | 0.287739 | 8_1:+19978790 | None:intergenic |
| TGTGTTCTTAGTTGAAATTT+TGG | 0.290144 | 8_1:-19979845 | Msa1184330:five_prime_UTR |
| CATCTCCTTTGCAACAATTA+GGG | 0.299962 | 8_1:+19977528 | None:intergenic |
| CAGCTTCCTTGCTTTGATAA+TGG | 0.303489 | 8_1:+19978339 | None:intergenic |
| CATTTAGCTTCTCAGAGATT+TGG | 0.316171 | 8_1:+19978689 | None:intergenic |
| GGATGTTAACATTGCTGTTA+TGG | 0.320450 | 8_1:-19979204 | Msa1184330:CDS |
| TGATATTGAACCAGCATTAG+AGG | 0.332040 | 8_1:-19979432 | Msa1184330:CDS |
| GTGTATTCTGATGGATCTTA+TGG | 0.333768 | 8_1:-19978144 | Msa1184330:CDS |
| GCTGCTTTCCCACTTCTTAG+AGG | 0.334277 | 8_1:-19979377 | Msa1184330:intron |
| TCTCCTTTGTCACATGTAAC+AGG | 0.337906 | 8_1:+19978093 | None:intergenic |
| GTTTCCAAGAACCAAATATA+CGG | 0.338070 | 8_1:+19977801 | None:intergenic |
| CTTGCGATCATATTCGTGAT+TGG | 0.341095 | 8_1:-19978288 | Msa1184330:CDS |
| GACACCGTATATTTGGTTCT+TGG | 0.342672 | 8_1:-19977805 | Msa1184330:three_prime_UTR |
| GCAAAATTACAGGTTGATTT+GGG | 0.351194 | 8_1:+19979462 | None:intergenic |
| CTTGATCATAATAGAGCATT+AGG | 0.352322 | 8_1:-19978712 | Msa1184330:CDS |
| TGTTCACTCTATGGTATGTT+AGG | 0.352327 | 8_1:+19980043 | None:intergenic |
| CTAATTCTCTGACATGCTTC+TGG | 0.371163 | 8_1:+19978569 | None:intergenic |
| CAAGGCTCAAGCTTCAGCTT+TGG | 0.381754 | 8_1:-19979114 | Msa1184330:CDS |
| TCAAGCATATGCAAAATTAC+AGG | 0.382709 | 8_1:+19979452 | None:intergenic |
| TGTGTTGTACACTCTAGTTT+AGG | 0.384161 | 8_1:-19977591 | Msa1184330:three_prime_UTR |
| ACATTGCCATGTTCACTCTA+TGG | 0.387399 | 8_1:+19980034 | None:intergenic |
| ATCATCCCTCTTGCTATCAT+TGG | 0.393430 | 8_1:+19979491 | None:intergenic |
| GAAGAGTTAGAAAGTTTGTA+AGG | 0.400829 | 8_1:-19977772 | Msa1184330:three_prime_UTR |
| AGCATTTGTATTTGCTGGAT+TGG | 0.420149 | 8_1:+19978795 | None:intergenic |
| TTGCGATCATATTCGTGATT+GGG | 0.420157 | 8_1:-19978287 | Msa1184330:CDS |
| GGCTCAAGCTTCAGCTTTGG+AGG | 0.422591 | 8_1:-19979111 | Msa1184330:CDS |
| AACATTGCTGTTATGGTTGG+TGG | 0.430741 | 8_1:-19979197 | Msa1184330:CDS |
| CTTTCCATTCCTTCCTTCCG+TGG | 0.437314 | 8_1:+19979170 | None:intergenic |
| CAGCATTAGAGGCACTTAAA+GGG | 0.439157 | 8_1:-19979421 | Msa1184330:CDS |
| AATGTTTGGTCTGGATATTA+TGG | 0.440068 | 8_1:-19980016 | Msa1184330:five_prime_UTR |
| GTGAAGTGGATTGTTTCCTT+AGG | 0.441688 | 8_1:-19980068 | Msa1184330:five_prime_UTR |
| CCTTTAAGTGCCTCTAATGC+TGG | 0.442041 | 8_1:+19979422 | None:intergenic |
| GCAACCGTGGCAACAAGAAA+TGG | 0.443310 | 8_1:-19978592 | Msa1184330:CDS |
| TCAGGGAACATGGGTATCAA+TGG | 0.455290 | 8_1:-19978169 | Msa1184330:intron |
| AGAGTGAACATGGCAATGTT+TGG | 0.456858 | 8_1:-19980030 | Msa1184330:five_prime_UTR |
| CTGGCCATTTCTTGTTGCCA+CGG | 0.472941 | 8_1:+19978588 | None:intergenic |
| ATAGCAAGAGGGATGATGTT+AGG | 0.473050 | 8_1:-19979485 | Msa1184330:CDS |
| TTGATCTATTTCAGGGAACA+TGG | 0.477408 | 8_1:-19978179 | Msa1184330:intron |
| TATAGGTGTTGTTGCTACTA+CGG | 0.487099 | 8_1:-19979246 | Msa1184330:intron |
| GAACATGGCAATGTTTGGTC+TGG | 0.488576 | 8_1:-19980025 | Msa1184330:five_prime_UTR |
| GGCACTTAAAGGGGTGAAGA+TGG | 0.489594 | 8_1:-19979411 | Msa1184330:CDS |
| GTTAACATTGCTGTTATGGT+TGG | 0.495278 | 8_1:-19979200 | Msa1184330:CDS |
| TGAATTCTCAAGGGAAAAGA+TGG | 0.497373 | 8_1:-19977928 | Msa1184330:CDS |
| CGACATGTGATGAATCTCAA+TGG | 0.500602 | 8_1:+19979699 | None:intergenic |
| TAAGAATGTTTCAATTTACA+AGG | 0.500824 | 8_1:-19979132 | Msa1184330:CDS |
| TTCTTGTTGCCACGGTTGCA+TGG | 0.502705 | 8_1:+19978596 | None:intergenic |
| GAAAGAACCGGTCACCGTAT+TGG | 0.503989 | 8_1:-19979899 | Msa1184330:five_prime_UTR |
| TTTCCATTCCTTCCTTCCGT+GGG | 0.509336 | 8_1:+19979171 | None:intergenic |
| CAGGGAACATGGGTATCAAT+GGG | 0.511230 | 8_1:-19978168 | Msa1184330:CDS |
| TATCACCCTAATTGTTGCAA+AGG | 0.511981 | 8_1:-19977533 | None:intergenic |
| TCTCAAAGTTGAGAAAGAAC+CGG | 0.521257 | 8_1:-19979911 | Msa1184330:five_prime_UTR |
| TCACAACTGTTCAGCAGCGT+GGG | 0.522667 | 8_1:-19978366 | Msa1184330:CDS |
| GTATTGGTCACTGGTGCTGC+AGG | 0.525951 | 8_1:-19979883 | Msa1184330:five_prime_UTR |
| TATGGTATGTTAGGATCCTA+AGG | 0.526483 | 8_1:+19980052 | None:intergenic |
| GTTGTACACTCTAGTTTAGG+AGG | 0.538077 | 8_1:-19977588 | Msa1184330:three_prime_UTR |
| CCGGTCACCGTATTGGTCAC+TGG | 0.538505 | 8_1:-19979892 | Msa1184330:five_prime_UTR |
| TTACATGTGACAAAGGAGAA+TGG | 0.562455 | 8_1:-19978089 | Msa1184330:CDS |
| TCAAGATTGATGAATTCTCA+AGG | 0.563770 | 8_1:-19977938 | Msa1184330:CDS |
| ATCACAACTGTTCAGCAGCG+TGG | 0.564705 | 8_1:-19978367 | Msa1184330:CDS |
| CCAGTGACCAATACGGTGAC+CGG | 0.566136 | 8_1:+19979892 | None:intergenic |
| GGTGGATTCCCACGGAAGGA+AGG | 0.567363 | 8_1:-19979179 | Msa1184330:CDS |
| GGATCTTATGGTATCCAACC+TGG | 0.573108 | 8_1:-19978132 | Msa1184330:CDS |
| TCTGGATATTATGGACCAAA+CGG | 0.580521 | 8_1:-19980007 | Msa1184330:five_prime_UTR |
| TTGGGTTCTAGGTACACCTA+AGG | 0.583834 | 8_1:-19978269 | Msa1184330:intron |
| TTATGGTTGGTGGATTCCCA+CGG | 0.584515 | 8_1:-19979187 | Msa1184330:CDS |
| TGATCTATTTCAGGGAACAT+GGG | 0.587962 | 8_1:-19978178 | Msa1184330:intron |
| CACAACTGTTCAGCAGCGTG+GGG | 0.588509 | 8_1:-19978365 | Msa1184330:CDS |
| GCCACTTGCAATTTACCCTG+TGG | 0.589300 | 8_1:+19979743 | None:intergenic |
| TCAATGGGAGTGTATTCTGA+TGG | 0.591080 | 8_1:-19978153 | Msa1184330:CDS |
| AAGAGTAAATGAGACCAGGT+TGG | 0.593344 | 8_1:+19978118 | None:intergenic |
| TTGTACACTCTAGTTTAGGA+GGG | 0.594174 | 8_1:-19977587 | Msa1184330:three_prime_UTR |
| TTTCCTGTTACATGTGACAA+AGG | 0.594930 | 8_1:-19978096 | Msa1184330:CDS |
| AAAACATGCCTCTAAGAAGT+GGG | 0.598346 | 8_1:+19979369 | None:intergenic |
| ATTCCCACGGAAGGAAGGAA+TGG | 0.604648 | 8_1:-19979174 | Msa1184330:CDS |
| TGCAGCACCAGTGACCAATA+CGG | 0.612142 | 8_1:+19979885 | None:intergenic |
| CTTGTTCCAATGATAGCAAG+AGG | 0.618184 | 8_1:-19979497 | Msa1184330:exon |
| GGATGTTGTTGAAGCTTGCA+AGG | 0.620315 | 8_1:-19979225 | Msa1184330:CDS |
| GCTCATTGAGGAGAAAACAT+TGG | 0.620815 | 8_1:-19977889 | Msa1184330:CDS |
| AACATACCATAGAGTGAACA+TGG | 0.620900 | 8_1:-19980040 | Msa1184330:five_prime_UTR |
| AGCATTAGAGGCACTTAAAG+GGG | 0.621633 | 8_1:-19979420 | Msa1184330:CDS |
| TGTACACTCTAGTTTAGGAG+GGG | 0.625534 | 8_1:-19977586 | Msa1184330:three_prime_UTR |
| CAAGATTGATGAATTCTCAA+GGG | 0.626012 | 8_1:-19977937 | Msa1184330:CDS |
| GGAGAATGGAACATTGTACA+AGG | 0.636027 | 8_1:-19978075 | Msa1184330:intron |
| TCCACAGGGTAAATTGCAAG+TGG | 0.636209 | 8_1:-19979744 | Msa1184330:five_prime_UTR |
| ATGCACATTACTCTTGAGCA+AGG | 0.637982 | 8_1:+19980140 | None:intergenic |
| GGTTGGTGGATTCCCACGGA+AGG | 0.640456 | 8_1:-19979183 | Msa1184330:CDS |
| AACAGCTCAAGAGCTCATTG+AGG | 0.646195 | 8_1:-19977901 | Msa1184330:CDS |
| GTAAATTGCAAGTGGCGAAG+TGG | 0.649439 | 8_1:-19979736 | Msa1184330:five_prime_UTR |
| GGAAAAGAGTAAATGAGACC+AGG | 0.651573 | 8_1:+19978114 | None:intergenic |
| GGGGTGCCATTATCAAAGCA+AGG | 0.653347 | 8_1:-19978345 | Msa1184330:CDS |
| TTGCTCAAGAGTAATGTGCA+TGG | 0.677366 | 8_1:-19980138 | Msa1184330:five_prime_UTR |
| AGACGTCAACCATGCAACCG+TGG | 0.680021 | 8_1:-19978605 | Msa1184330:CDS |
| TTGTTCCAATGATAGCAAGA+GGG | 0.692772 | 8_1:-19979496 | Msa1184330:exon |
| ACAACTGTTCAGCAGCGTGG+GGG | 0.720838 | 8_1:-19978364 | Msa1184330:CDS |
| TGATGAATCTCAATGGATCG+TGG | 0.723877 | 8_1:+19979706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTATATTGATTTTTAT+TGG | + | chr8_1:19978027-19978046 | None:intergenic | 10.0% |
| !! | TTAATCAAATCAAAATTAAA+AGG | + | chr8_1:19978144-19978163 | None:intergenic | 10.0% |
| !!! | AAACTTGTTATATAAAAAGA+TGG | - | chr8_1:19977595-19977614 | Msa1184330:three_prime_UTR | 15.0% |
| !! | TGCATATAAAAATGTAATAT+AGG | - | chr8_1:19978422-19978441 | Msa1184330:intron | 15.0% |
| !!! | CATTTTTTTTGTGAAATTAA+AGG | + | chr8_1:19979832-19979851 | None:intergenic | 15.0% |
| !!! | AAACAAGAACAATTTTTTGA+AGG | + | chr8_1:19977705-19977724 | None:intergenic | 20.0% |
| !! | ACATAAATTTAAAAATCCAC+AGG | - | chr8_1:19977926-19977945 | Msa1184330:CDS | 20.0% |
| !! | CATAAATTTAAAAATCCACA+GGG | - | chr8_1:19977927-19977946 | Msa1184330:CDS | 20.0% |
| !!! | TTTTGATTTGATTAAAACAC+AGG | - | chr8_1:19978149-19978168 | Msa1184330:CDS | 20.0% |
| !! | TAAGAATGTTTCAATTTACA+AGG | - | chr8_1:19978553-19978572 | Msa1184330:intron | 20.0% |
| !!! | GACATGTTATATTTTTATCA+GGG | + | chr8_1:19978945-19978964 | None:intergenic | 20.0% |
| !!! | AGACATGTTATATTTTTATC+AGG | + | chr8_1:19978946-19978965 | None:intergenic | 20.0% |
| !! | ATGTGAAAAATGTTATCATT+TGG | - | chr8_1:19979031-19979050 | Msa1184330:intron | 20.0% |
| !! | TGTGAAAAATGTTATCATTT+GGG | - | chr8_1:19979032-19979051 | Msa1184330:intron | 20.0% |
| !!! | ATATATTTTTCTTGTGTGTT+AGG | - | chr8_1:19979280-19979299 | Msa1184330:intron | 20.0% |
| !! | TATTTACTTTGATCTATTTC+AGG | - | chr8_1:19979498-19979517 | Msa1184330:exon | 20.0% |
| !! | ATTTACTTTGATCTATTTCA+GGG | - | chr8_1:19979499-19979518 | Msa1184330:exon | 20.0% |
| !! | TTATGTTATGATAATTTGAC+AGG | - | chr8_1:19979722-19979741 | Msa1184330:five_prime_UTR | 20.0% |
| !! | TATGTTATGATAATTTGACA+GGG | - | chr8_1:19979723-19979742 | Msa1184330:five_prime_UTR | 20.0% |
| !!! | TGAAGATTTGTTATTTTAGA+AGG | - | chr8_1:19980061-19980080 | Msa1184330:five_prime_UTR | 20.0% |
| ! | TATATAAAAAGATGGTGAAG+TGG | - | chr8_1:19977603-19977622 | Msa1184330:three_prime_UTR | 25.0% |
| !!! | TAGTTTGCACTTTTTTGTTT+TGG | - | chr8_1:19977725-19977744 | Msa1184330:three_prime_UTR | 25.0% |
| !! | TGTGTTCTTAGTTGAAATTT+TGG | - | chr8_1:19977840-19977859 | Msa1184330:three_prime_UTR | 25.0% |
| !!! | TTGAAATTTTGGTTAACCTT+AGG | - | chr8_1:19977851-19977870 | Msa1184330:three_prime_UTR | 25.0% |
| !!! | GCTTTATTTGCAATGTAATA+TGG | + | chr8_1:19977895-19977914 | None:intergenic | 25.0% |
| ! | CAATTAATCATATTCCATCA+TGG | - | chr8_1:19978363-19978382 | Msa1184330:CDS | 25.0% |
| ! | ATTCATAAAGAAAACCATGA+TGG | + | chr8_1:19978380-19978399 | None:intergenic | 25.0% |
| ! | ACCTAACTATACTATAAAGA+GGG | + | chr8_1:19978641-19978660 | None:intergenic | 25.0% |
| ! | AACCTAACTATACTATAAAG+AGG | + | chr8_1:19978642-19978661 | None:intergenic | 25.0% |
| ! | AGGTTCATAAAAAATCAGTT+AGG | - | chr8_1:19978657-19978676 | Msa1184330:intron | 25.0% |
| ! | AAAATCAGTTAGGTTTGAAA+AGG | - | chr8_1:19978667-19978686 | Msa1184330:CDS | 25.0% |
| ! | CCAAAACTTTATACCAATTT+GGG | - | chr8_1:19978737-19978756 | Msa1184330:CDS | 25.0% |
| ! | AAGACTGAACTGTTAATTAA+TGG | + | chr8_1:19978773-19978792 | None:intergenic | 25.0% |
| !! | TTCCAATTATTTCTTAATGC+AGG | - | chr8_1:19978855-19978874 | Msa1184330:intron | 25.0% |
| !!! | ATATTTTTATCAGGGATTGA+TGG | + | chr8_1:19978937-19978956 | None:intergenic | 25.0% |
| ! | GTGAAAAATGTTATCATTTG+GGG | - | chr8_1:19979033-19979052 | Msa1184330:intron | 25.0% |
| ! | AATTAGTTGCTGATGATAAT+TGG | - | chr8_1:19979133-19979152 | Msa1184330:CDS | 25.0% |
| ! | AATTAAGAAAAACGAACCTT+AGG | + | chr8_1:19979435-19979454 | None:intergenic | 25.0% |
| !! | TACTATTGTTATGTCTTTTG+TGG | - | chr8_1:19980029-19980048 | Msa1184330:five_prime_UTR | 25.0% |
| !!! | AATCTCATCTGATTTTAGAA+GGG | + | chr8_1:19980132-19980151 | None:intergenic | 25.0% |
| !! | AAATCTCATCTGATTTTAGA+AGG | + | chr8_1:19980133-19980152 | None:intergenic | 25.0% |
| AATGTTTGGTCTGGATATTA+TGG | - | chr8_1:19977669-19977688 | Msa1184330:three_prime_UTR | 30.0% | |
| CAAAAATATGTGACTTCCTA+AGG | + | chr8_1:19977870-19977889 | None:intergenic | 30.0% | |
| GATTAAAACACAGGACAAAT+TGG | - | chr8_1:19978158-19978177 | Msa1184330:CDS | 30.0% | |
| !! | GCAAAATTACAGGTTGATTT+GGG | + | chr8_1:19978226-19978245 | None:intergenic | 30.0% |
| !! | TGCAAAATTACAGGTTGATT+TGG | + | chr8_1:19978227-19978246 | None:intergenic | 30.0% |
| TCAAGCATATGCAAAATTAC+AGG | + | chr8_1:19978236-19978255 | None:intergenic | 30.0% | |
| ACCCTCTTTATAGTATAGTT+AGG | - | chr8_1:19978637-19978656 | Msa1184330:intron | 30.0% | |
| GCCAAAACTTTATACCAATT+TGG | - | chr8_1:19978736-19978755 | Msa1184330:CDS | 30.0% | |
| ! | CCCAAATTGGTATAAAGTTT+TGG | + | chr8_1:19978740-19978759 | None:intergenic | 30.0% |
| GAAAGGAAATTATAACTACC+TGG | + | chr8_1:19978797-19978816 | None:intergenic | 30.0% | |
| ATCAAGATTAGGATTGTTCA+TGG | + | chr8_1:19978829-19978848 | None:intergenic | 30.0% | |
| TGGAAGATACAATCAAGATT+AGG | + | chr8_1:19978840-19978859 | None:intergenic | 30.0% | |
| CACCTGCATTAAGAAATAAT+TGG | + | chr8_1:19978860-19978879 | None:intergenic | 30.0% | |
| ! | ATTAGAGCATTTGTATTTGC+TGG | + | chr8_1:19978898-19978917 | None:intergenic | 30.0% |
| ! | CTTGATCATAATAGAGCATT+AGG | - | chr8_1:19978973-19978992 | Msa1184330:intron | 30.0% |
| AATAAAGCACAAAGCATAAG+TGG | + | chr8_1:19979482-19979501 | None:intergenic | 30.0% | |
| !! | TTCCTAGTTCTAGCAAATAA+CGG | - | chr8_1:19979661-19979680 | Msa1184330:five_prime_UTR | 30.0% |
| ! | CATAACTGATTTCTTCATCA+AGG | + | chr8_1:19979707-19979726 | None:intergenic | 30.0% |
| TCAAGATTGATGAATTCTCA+AGG | - | chr8_1:19979747-19979766 | Msa1184330:five_prime_UTR | 30.0% | |
| CAAGATTGATGAATTCTCAA+GGG | - | chr8_1:19979748-19979767 | Msa1184330:five_prime_UTR | 30.0% | |
| AAAAAAGGGTAGTCAATTCA+AGG | + | chr8_1:19979855-19979874 | None:intergenic | 30.0% | |
| ! | TACGGTGTCAACTTAAAAAA+GGG | + | chr8_1:19979869-19979888 | None:intergenic | 30.0% |
| ! | ATACGGTGTCAACTTAAAAA+AGG | + | chr8_1:19979870-19979889 | None:intergenic | 30.0% |
| !! | TTAAGTTGACACCGTATATT+TGG | - | chr8_1:19979873-19979892 | Msa1184330:five_prime_UTR | 30.0% |
| GTTTCCAAGAACCAAATATA+CGG | + | chr8_1:19979887-19979906 | None:intergenic | 30.0% | |
| GAAGAGTTAGAAAGTTTGTA+AGG | - | chr8_1:19979913-19979932 | Msa1184330:five_prime_UTR | 30.0% | |
| TATGGTATGTTAGGATCCTA+AGG | + | chr8_1:19977636-19977655 | None:intergenic | 35.0% | |
| TGTTCACTCTATGGTATGTT+AGG | + | chr8_1:19977645-19977664 | None:intergenic | 35.0% | |
| AACATACCATAGAGTGAACA+TGG | - | chr8_1:19977645-19977664 | Msa1184330:three_prime_UTR | 35.0% | |
| TCTGGATATTATGGACCAAA+CGG | - | chr8_1:19977678-19977697 | Msa1184330:three_prime_UTR | 35.0% | |
| !!! | CAATTTTTTGAAGGACCGTT+TGG | + | chr8_1:19977696-19977715 | None:intergenic | 35.0% |
| TCTCAAAGTTGAGAAAGAAC+CGG | - | chr8_1:19977774-19977793 | Msa1184330:three_prime_UTR | 35.0% | |
| TTGTTCCAATGATAGCAAGA+GGG | - | chr8_1:19978189-19978208 | Msa1184330:intron | 35.0% | |
| TGATATTGAACCAGCATTAG+AGG | - | chr8_1:19978253-19978272 | Msa1184330:intron | 35.0% | |
| ! | AAAACATGCCTCTAAGAAGT+GGG | + | chr8_1:19978319-19978338 | None:intergenic | 35.0% |
| ! | AAAAACATGCCTCTAAGAAG+TGG | + | chr8_1:19978320-19978339 | None:intergenic | 35.0% |
| !! | TATAGGTGTTGTTGCTACTA+CGG | - | chr8_1:19978439-19978458 | Msa1184330:intron | 35.0% |
| ! | GGATGTTAACATTGCTGTTA+TGG | - | chr8_1:19978481-19978500 | Msa1184330:intron | 35.0% |
| ! | GTTAACATTGCTGTTATGGT+TGG | - | chr8_1:19978485-19978504 | Msa1184330:intron | 35.0% |
| ! | ACCATCATGGTTTTCTGTAA+AGG | - | chr8_1:19978691-19978710 | Msa1184330:CDS | 35.0% |
| ACCTTTACAGAAAACCATGA+TGG | + | chr8_1:19978695-19978714 | None:intergenic | 35.0% | |
| ATTAACAGTTCAGTCTTACC+AGG | - | chr8_1:19978776-19978795 | Msa1184330:CDS | 35.0% | |
| !! | GTTCATGGTTTGGTTTAGAA+AGG | + | chr8_1:19978814-19978833 | None:intergenic | 35.0% |
| GATTAGGATTGTTCATGGTT+TGG | + | chr8_1:19978824-19978843 | None:intergenic | 35.0% | |
| ! | AGCATTTGTATTTGCTGGAT+TGG | + | chr8_1:19978893-19978912 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTCAGAGATT+TGG | + | chr8_1:19978999-19979018 | None:intergenic | 35.0% |
| ! | ATTGAGAAGGTTTGAAACTG+AGG | + | chr8_1:19979161-19979180 | None:intergenic | 35.0% |
| CAAAGATAGTCAGATTGAGA+AGG | + | chr8_1:19979174-19979193 | None:intergenic | 35.0% | |
| ! | TGGAATATTTAGAGCATGGA+TGG | + | chr8_1:19979215-19979234 | None:intergenic | 35.0% |
| ! | TGCATGGAATATTTAGAGCA+TGG | + | chr8_1:19979219-19979238 | None:intergenic | 35.0% |
| ACACTTAATTTCCTAGCTAG+TGG | + | chr8_1:19979260-19979279 | None:intergenic | 35.0% | |
| TTGCGATCATATTCGTGATT+GGG | - | chr8_1:19979398-19979417 | Msa1184330:CDS | 35.0% | |
| TTGATCTATTTCAGGGAACA+TGG | - | chr8_1:19979506-19979525 | Msa1184330:exon | 35.0% | |
| TGATCTATTTCAGGGAACAT+GGG | - | chr8_1:19979507-19979526 | Msa1184330:exon | 35.0% | |
| ! | GTGTATTCTGATGGATCTTA+TGG | - | chr8_1:19979541-19979560 | Msa1184330:five_prime_UTR | 35.0% |
| TTTCCTGTTACATGTGACAA+AGG | - | chr8_1:19979589-19979608 | Msa1184330:five_prime_UTR | 35.0% | |
| TTACATGTGACAAAGGAGAA+TGG | - | chr8_1:19979596-19979615 | Msa1184330:five_prime_UTR | 35.0% | |
| TGAATTCTCAAGGGAAAAGA+TGG | - | chr8_1:19979757-19979776 | Msa1184330:five_prime_UTR | 35.0% | |
| ! | TGTGTTGTACACTCTAGTTT+AGG | - | chr8_1:19980094-19980113 | Msa1184330:five_prime_UTR | 35.0% |
| ! | TTGTACACTCTAGTTTAGGA+GGG | - | chr8_1:19980098-19980117 | Msa1184330:five_prime_UTR | 35.0% |
| ATGCACATTACTCTTGAGCA+AGG | + | chr8_1:19977548-19977567 | None:intergenic | 40.0% | |
| TTGCTCAAGAGTAATGTGCA+TGG | - | chr8_1:19977547-19977566 | Msa1184330:three_prime_UTR | 40.0% | |
| !! | GTGAAGTGGATTGTTTCCTT+AGG | - | chr8_1:19977617-19977636 | Msa1184330:three_prime_UTR | 40.0% |
| ACATTGCCATGTTCACTCTA+TGG | + | chr8_1:19977654-19977673 | None:intergenic | 40.0% | |
| AGAGTGAACATGGCAATGTT+TGG | - | chr8_1:19977655-19977674 | Msa1184330:three_prime_UTR | 40.0% | |
| TGATGAATCTCAATGGATCG+TGG | + | chr8_1:19977982-19978001 | None:intergenic | 40.0% | |
| CGACATGTGATGAATCTCAA+TGG | + | chr8_1:19977989-19978008 | None:intergenic | 40.0% | |
| CTTGTTCCAATGATAGCAAG+AGG | - | chr8_1:19978188-19978207 | Msa1184330:intron | 40.0% | |
| ! | ATCATCCCTCTTGCTATCAT+TGG | + | chr8_1:19978197-19978216 | None:intergenic | 40.0% |
| ATAGCAAGAGGGATGATGTT+AGG | - | chr8_1:19978200-19978219 | Msa1184330:intron | 40.0% | |
| !! | CAGCATTAGAGGCACTTAAA+GGG | - | chr8_1:19978264-19978283 | Msa1184330:intron | 40.0% |
| !! | AGCATTAGAGGCACTTAAAG+GGG | - | chr8_1:19978265-19978284 | Msa1184330:intron | 40.0% |
| ! | AACATTGCTGTTATGGTTGG+TGG | - | chr8_1:19978488-19978507 | Msa1184330:intron | 40.0% |
| CTAATTCTCTGACATGCTTC+TGG | + | chr8_1:19979119-19979138 | None:intergenic | 40.0% | |
| CAGCTTCCTTGCTTTGATAA+TGG | + | chr8_1:19979349-19979368 | None:intergenic | 40.0% | |
| CTTGCGATCATATTCGTGAT+TGG | - | chr8_1:19979397-19979416 | Msa1184330:CDS | 40.0% | |
| CATATTCGTGATTGGGTTCT+AGG | - | chr8_1:19979405-19979424 | Msa1184330:CDS | 40.0% | |
| ! | TCAATGGGAGTGTATTCTGA+TGG | - | chr8_1:19979532-19979551 | Msa1184330:five_prime_UTR | 40.0% |
| AAGAGTAAATGAGACCAGGT+TGG | + | chr8_1:19979570-19979589 | None:intergenic | 40.0% | |
| GGAAAAGAGTAAATGAGACC+AGG | + | chr8_1:19979574-19979593 | None:intergenic | 40.0% | |
| TCTCCTTTGTCACATGTAAC+AGG | + | chr8_1:19979595-19979614 | None:intergenic | 40.0% | |
| GGAGAATGGAACATTGTACA+AGG | - | chr8_1:19979610-19979629 | Msa1184330:five_prime_UTR | 40.0% | |
| ! | GACCGTTATTTGCTAGAACT+AGG | + | chr8_1:19979666-19979685 | None:intergenic | 40.0% |
| GCTCATTGAGGAGAAAACAT+TGG | - | chr8_1:19979796-19979815 | Msa1184330:five_prime_UTR | 40.0% | |
| !! | GACACCGTATATTTGGTTCT+TGG | - | chr8_1:19979880-19979899 | Msa1184330:five_prime_UTR | 40.0% |
| ! | GTTGTACACTCTAGTTTAGG+AGG | - | chr8_1:19980097-19980116 | Msa1184330:five_prime_UTR | 40.0% |
| ! | TGTACACTCTAGTTTAGGAG+GGG | - | chr8_1:19980099-19980118 | Msa1184330:five_prime_UTR | 40.0% |
| GAACATGGCAATGTTTGGTC+TGG | - | chr8_1:19977660-19977679 | Msa1184330:three_prime_UTR | 45.0% | |
| TCCACAGGGTAAATTGCAAG+TGG | - | chr8_1:19977941-19977960 | Msa1184330:CDS | 45.0% | |
| GTAAATTGCAAGTGGCGAAG+TGG | - | chr8_1:19977949-19977968 | Msa1184330:intron | 45.0% | |
| CCTTTAAGTGCCTCTAATGC+TGG | + | chr8_1:19978266-19978285 | None:intergenic | 45.0% | |
| !! | CCAGCATTAGAGGCACTTAA+AGG | - | chr8_1:19978263-19978282 | Msa1184330:intron | 45.0% |
| GGATGTTGTTGAAGCTTGCA+AGG | - | chr8_1:19978460-19978479 | Msa1184330:intron | 45.0% | |
| !! | TTATGGTTGGTGGATTCCCA+CGG | - | chr8_1:19978498-19978517 | Msa1184330:intron | 45.0% |
| TTTCCATTCCTTCCTTCCGT+GGG | + | chr8_1:19978517-19978536 | None:intergenic | 45.0% | |
| !! | GGTTTGAAAAGGCACCATCA+TGG | - | chr8_1:19978678-19978697 | Msa1184330:CDS | 45.0% |
| ! | GACGTCTGGATATTGAGTTG+AGG | + | chr8_1:19979067-19979086 | None:intergenic | 45.0% |
| GAGATTGCTTTGCATGTGCA+TGG | + | chr8_1:19979235-19979254 | None:intergenic | 45.0% | |
| AGCAATCTCTTCCACTAGCT+AGG | - | chr8_1:19979246-19979265 | Msa1184330:intron | 45.0% | |
| !! | TTGGGTTCTAGGTACACCTA+AGG | - | chr8_1:19979416-19979435 | Msa1184330:CDS | 45.0% |
| TCAGGGAACATGGGTATCAA+TGG | - | chr8_1:19979516-19979535 | Msa1184330:five_prime_UTR | 45.0% | |
| CAGGGAACATGGGTATCAAT+GGG | - | chr8_1:19979517-19979536 | Msa1184330:five_prime_UTR | 45.0% | |
| GGATCTTATGGTATCCAACC+TGG | - | chr8_1:19979553-19979572 | Msa1184330:five_prime_UTR | 45.0% | |
| AACAGCTCAAGAGCTCATTG+AGG | - | chr8_1:19979784-19979803 | Msa1184330:five_prime_UTR | 45.0% | |
| GAAAGAACCGGTCACCGTAT+TGG | - | chr8_1:19977786-19977805 | Msa1184330:three_prime_UTR | 50.0% | |
| TGCAGCACCAGTGACCAATA+CGG | + | chr8_1:19977803-19977822 | None:intergenic | 50.0% | |
| GCCACTTGCAATTTACCCTG+TGG | + | chr8_1:19977945-19977964 | None:intergenic | 50.0% | |
| GGCACTTAAAGGGGTGAAGA+TGG | - | chr8_1:19978274-19978293 | Msa1184330:CDS | 50.0% | |
| ! | GCTGCTTTCCCACTTCTTAG+AGG | - | chr8_1:19978308-19978327 | Msa1184330:CDS | 50.0% |
| ATTCCCACGGAAGGAAGGAA+TGG | - | chr8_1:19978511-19978530 | Msa1184330:intron | 50.0% | |
| CTTTCCATTCCTTCCTTCCG+TGG | + | chr8_1:19978518-19978537 | None:intergenic | 50.0% | |
| CAAGGCTCAAGCTTCAGCTT+TGG | - | chr8_1:19978571-19978590 | Msa1184330:intron | 50.0% | |
| TGGTTCGTCTCGACCCAAAT+TGG | + | chr8_1:19978753-19978772 | None:intergenic | 50.0% | |
| TTCTTGTTGCCACGGTTGCA+TGG | + | chr8_1:19979092-19979111 | None:intergenic | 50.0% | |
| GCAACCGTGGCAACAAGAAA+TGG | - | chr8_1:19979093-19979112 | Msa1184330:CDS | 50.0% | |
| CTGGCCATTTCTTGTTGCCA+CGG | + | chr8_1:19979100-19979119 | None:intergenic | 50.0% | |
| ATCACAACTGTTCAGCAGCG+TGG | - | chr8_1:19979318-19979337 | Msa1184330:intron | 50.0% | |
| TCACAACTGTTCAGCAGCGT+GGG | - | chr8_1:19979319-19979338 | Msa1184330:intron | 50.0% | |
| !! | GGGGTGCCATTATCAAAGCA+AGG | - | chr8_1:19979340-19979359 | Msa1184330:intron | 50.0% |
| CCAGTGACCAATACGGTGAC+CGG | + | chr8_1:19977796-19977815 | None:intergenic | 55.0% | |
| !! | GTATTGGTCACTGGTGCTGC+AGG | - | chr8_1:19977802-19977821 | Msa1184330:three_prime_UTR | 55.0% |
| ! | GGCTCAAGCTTCAGCTTTGG+AGG | - | chr8_1:19978574-19978593 | Msa1184330:intron | 55.0% |
| ACGGTTGCATGGTTGACGTC+TGG | + | chr8_1:19979081-19979100 | None:intergenic | 55.0% | |
| AGACGTCAACCATGCAACCG+TGG | - | chr8_1:19979080-19979099 | Msa1184330:intron | 55.0% | |
| CACAACTGTTCAGCAGCGTG+GGG | - | chr8_1:19979320-19979339 | Msa1184330:intron | 55.0% | |
| ACAACTGTTCAGCAGCGTGG+GGG | - | chr8_1:19979321-19979340 | Msa1184330:intron | 55.0% | |
| ! | CCGGTCACCGTATTGGTCAC+TGG | - | chr8_1:19977793-19977812 | Msa1184330:three_prime_UTR | 60.0% |
| !! | GGTTGGTGGATTCCCACGGA+AGG | - | chr8_1:19978502-19978521 | Msa1184330:intron | 60.0% |
| ! | GGTGGATTCCCACGGAAGGA+AGG | - | chr8_1:19978506-19978525 | Msa1184330:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 19977536 | 19980171 | 19977536 | ID=Msa1184330;Name=Msa1184330 |
| chr8_1 | mRNA | 19977536 | 19980171 | 19977536 | ID=Msa1184330-mRNA-1;Parent=Msa1184330;Name=Msa1184330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=661|0.66|0.57|1|0.83|0.85|7|336|282 |
| chr8_1 | exon | 19977536 | 19977963 | 19977536 | ID=Msa1184330-mRNA-1:exon:7706;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19978076 | 19978187 | 19978076 | ID=Msa1184330-mRNA-1:exon:7705;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19978270 | 19978396 | 19978270 | ID=Msa1184330-mRNA-1:exon:7704;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19978582 | 19978625 | 19978582 | ID=Msa1184330-mRNA-1:exon:7703;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19978666 | 19978830 | 19978666 | ID=Msa1184330-mRNA-1:exon:7702;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19979088 | 19979263 | 19979088 | ID=Msa1184330-mRNA-1:exon:7701;Parent=Msa1184330-mRNA-1 |
| chr8_1 | exon | 19979378 | 19980171 | 19979378 | ID=Msa1184330-mRNA-1:exon:7700;Parent=Msa1184330-mRNA-1 |
| chr8_1 | five_prime_UTR | 19979511 | 19980171 | 19979511 | ID=Msa1184330-mRNA-1:five_prime_utr;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19979378 | 19979510 | 19979378 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19979088 | 19979263 | 19979088 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19978666 | 19978830 | 19978666 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19978582 | 19978625 | 19978582 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19978270 | 19978396 | 19978270 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19978076 | 19978187 | 19978076 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | CDS | 19977872 | 19977963 | 19977872 | ID=Msa1184330-mRNA-1:cds;Parent=Msa1184330-mRNA-1 |
| chr8_1 | three_prime_UTR | 19977536 | 19977871 | 19977536 | ID=Msa1184330-mRNA-1:three_prime_utr;Parent=Msa1184330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
