AlfalfaGEDB | Msa1227940

M. sativa cultivar zhongmu-4 / Msa1227940

KEGG: K00025
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564
PFAM: PF00056.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1227940	XP_024628361.2	97.923	337	7	0	1	337	34	370	0.0	682

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1227940	sp\|Q08062\|MDHC_MAIZE	85.714	329	47	0	9	337	3	331	0.0	573

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081520	Msa1227940	0.864492	1.169980e-64	-8.615850e-47
Msa0093850	Msa1227940	0.822149	2.764130e-53	-8.615850e-47
Msa0094850	Msa1227940	0.805712	1.169593e-49	-8.615850e-47
Msa0102870	Msa1227940	0.805756	1.144796e-49	-8.615850e-47
Msa0118570	Msa1227940	0.806380	8.459686e-50	-8.615850e-47
Msa0614000	Msa1227940	0.806806	6.877147e-50	-8.615850e-47
Msa0616510	Msa1227940	0.850135	2.065370e-60	-8.615850e-47
Msa0626450	Msa1227940	0.804393	2.207444e-49	-8.615850e-47
Msa0626490	Msa1227940	0.802280	6.046701e-49	-8.615850e-47
Msa0638480	Msa1227940	0.843191	1.630862e-58	-8.615850e-47
Msa0650660	Msa1227940	0.801838	7.453413e-49	-8.615850e-47
Msa0664600	Msa1227940	0.800225	1.592407e-48	-8.615850e-47
Msa0699840	Msa1227940	0.863353	2.644775e-64	-8.615850e-47
Msa0740100	Msa1227940	0.849347	3.428418e-60	-8.615850e-47
Msa0742650	Msa1227940	0.814020	1.905932e-51	-8.615850e-47
Msa0742740	Msa1227940	0.833626	4.785980e-56	-8.615850e-47
Msa0782740	Msa1227940	0.831226	1.882010e-55	-8.615850e-47
Msa0782760	Msa1227940	0.858797	6.436722e-63	-8.615850e-47
Msa0796160	Msa1227940	0.849646	2.828846e-60	-8.615850e-47
Msa0820390	Msa1227940	0.844591	6.876138e-59	-8.615850e-47
Msa0823820	Msa1227940	0.839728	1.332367e-57	-8.615850e-47
Msa0833760	Msa1227940	0.834891	2.306319e-56	-8.615850e-47
Msa0129940	Msa1227940	0.817541	3.125616e-52	-8.615850e-47
Msa0130240	Msa1227940	0.803023	4.248382e-49	-8.615850e-47
Msa0164400	Msa1227940	0.813462	2.528308e-51	-8.615850e-47
Msa0173890	Msa1227940	0.864002	1.663030e-64	-8.615850e-47
Msa0174450	Msa1227940	0.806335	8.646731e-50	-8.615850e-47
Msa0194820	Msa1227940	0.827462	1.543711e-54	-8.615850e-47
Msa0194840	Msa1227940	0.829401	5.255839e-55	-8.615850e-47
Msa0206840	Msa1227940	0.834722	2.542358e-56	-8.615850e-47
Msa0221000	Msa1227940	0.827880	1.225440e-54	-8.615850e-47
Msa0223080	Msa1227940	0.800161	1.640727e-48	-8.615850e-47
Msa1227940	Msa1271040	0.841226	5.404417e-58	-8.615850e-47
Msa1227940	Msa1308140	0.833858	4.189507e-56	-8.615850e-47
Msa1227940	Msa1341890	0.848072	7.738703e-60	-8.615850e-47
Msa1227940	Msa1351780	0.800618	1.324682e-48	-8.615850e-47
Msa1227940	Msa1356830	0.851695	7.506636e-61	-8.615850e-47
Msa1227940	Msa1432500	0.804879	1.747278e-49	-8.615850e-47
Msa1227940	Msa1437940	0.847060	1.468648e-59	-8.615850e-47
Msa1227940	Msa1445190	0.812227	4.712890e-51	-8.615850e-47
Msa1227940	Msa1446820	0.803633	3.176434e-49	-8.615850e-47
Msa1227940	Msa1465010	0.804338	2.266067e-49	-8.615850e-47
Msa0367830	Msa1227940	0.832105	1.142638e-55	-8.615850e-47
Msa0371170	Msa1227940	0.829670	4.519784e-55	-8.615850e-47
Msa0376630	Msa1227940	0.802086	6.628995e-49	-8.615850e-47
Msa0378720	Msa1227940	0.830225	3.310231e-55	-8.615850e-47
Msa0382550	Msa1227940	0.812911	3.340433e-51	-8.615850e-47
Msa0388770	Msa1227940	0.870548	1.342768e-66	-8.615850e-47
Msa0393150	Msa1227940	0.808677	2.753786e-50	-8.615850e-47
Msa0393340	Msa1227940	0.821447	4.018054e-53	-8.615850e-47
Msa0432380	Msa1227940	0.820905	5.356894e-53	-8.615850e-47
Msa0441290	Msa1227940	0.810448	1.147188e-50	-8.615850e-47
Msa0447370	Msa1227940	0.801352	9.377788e-49	-8.615850e-47
Msa0462070	Msa1227940	0.822532	2.252376e-53	-8.615850e-47
Msa0465400	Msa1227940	0.818520	1.877877e-52	-8.615850e-47
Msa0474730	Msa1227940	0.824935	6.162873e-54	-8.615850e-47
Msa1020630	Msa1227940	0.869510	2.934562e-66	-8.615850e-47
Msa1023290	Msa1227940	0.801413	9.112510e-49	-8.615850e-47
Msa1031930	Msa1227940	0.838955	2.113864e-57	-8.615850e-47
Msa1071770	Msa1227940	0.842978	1.858567e-58	-8.615850e-47
Msa0249540	Msa1227940	0.841305	5.149970e-58	-8.615850e-47
Msa0265850	Msa1227940	0.822834	1.915953e-53	-8.615850e-47
Msa0267920	Msa1227940	0.801794	7.609253e-49	-8.615850e-47
Msa0300270	Msa1227940	0.834046	3.758092e-56	-8.615850e-47
Msa0300320	Msa1227940	0.849680	2.767661e-60	-8.615850e-47
Msa0302160	Msa1227940	0.803555	3.296557e-49	-8.615850e-47
Msa0307270	Msa1227940	0.806079	9.792041e-50	-8.615850e-47
Msa0319940	Msa1227940	0.805381	1.372299e-49	-8.615850e-47
Msa0326590	Msa1227940	0.841437	4.754305e-58	-8.615850e-47
Msa0335800	Msa1227940	0.821993	3.004672e-53	-8.615850e-47
Msa0337700	Msa1227940	0.820156	7.958258e-53	-8.615850e-47
Msa0339490	Msa1227940	0.806741	7.100035e-50	-8.615850e-47
Msa0341690	Msa1227940	0.825844	3.755082e-54	-8.615850e-47
Msa0346060	Msa1227940	0.815196	1.046385e-51	-8.615850e-47
Msa0361080	Msa1227940	0.808971	2.383066e-50	-8.615850e-47
Msa1113800	Msa1227940	0.866997	1.892383e-65	-8.615850e-47
Msa1118600	Msa1227940	0.813642	2.308443e-51	-8.615850e-47
Msa1132700	Msa1227940	0.834103	3.637338e-56	-8.615850e-47
Msa1150820	Msa1227940	0.862309	5.552327e-64	-8.615850e-47
Msa1158830	Msa1227940	0.845678	3.495424e-59	-8.615850e-47
Msa1160500	Msa1227940	0.863366	2.620768e-64	-8.615850e-47
Msa1181190	Msa1227940	0.801608	8.308503e-49	-8.615850e-47
Msa1184330	Msa1227940	0.974662	1.493183e-138	-8.615850e-47
Msa1208160	Msa1227940	0.806180	9.324254e-50	-8.615850e-47
Msa0488790	Msa1227940	0.821941	3.088764e-53	-8.615850e-47
Msa0511260	Msa1227940	0.840403	8.878711e-58	-8.615850e-47
Msa0513160	Msa1227940	0.813873	2.053177e-51	-8.615850e-47
Msa0525230	Msa1227940	0.808868	2.506949e-50	-8.615850e-47
Msa0562620	Msa1227940	0.804614	1.985231e-49	-8.615850e-47
Msa0573380	Msa1227940	0.804129	2.505325e-49	-8.615850e-47
Msa0579330	Msa1227940	0.814319	1.636589e-51	-8.615850e-47
Msa0580440	Msa1227940	0.849861	2.463625e-60	-8.615850e-47
Msa0863010	Msa1227940	0.836656	8.234225e-57	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1227940	MtrunA17_Chr8g0334691	97.727	308	7	0	30	337	1	308	0.0	625
Msa1227940	MtrunA17_Chr1g0167651	85.410	329	48	0	9	337	3	331	0.0	565
Msa1227940	MtrunA17_Chr1g0187751	84.195	329	52	0	9	337	3	331	0.0	557
Msa1227940	MtrunA17_Chr1g0197371	42.593	324	180	4	9	330	92	411	8.27e-81	252

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1227940	AT1G04410.1	82.979	329	56	0	9	337	3	331	0.0	547
Msa1227940	AT5G43330.1	83.283	329	55	0	9	337	3	331	0.0	546
Msa1227940	AT5G56720.1	75.371	337	83	0	1	337	34	370	0.0	533
Msa1227940	AT5G58330.1	43.827	324	176	4	9	330	97	416	3.06e-84	261
Msa1227940	AT5G58330.2	43.827	324	176	4	9	330	96	415	3.07e-84	261
Msa1227940	AT5G58330.3	43.871	310	168	4	23	330	2	307	5.50e-81	250
Msa1227940	AT3G47520.1	28.400	250	158	7	14	253	85	323	2.46e-13	70.9

Find 87 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCAAAATTACAGGTTGATT+TGG	0.201276	8_2:+3357903	None:intergenic
CATATTCGTGATTGGGTTCT+AGG	0.208668	8_2:-3356722	Msa1227940:CDS
TTAAGTTGACACCGTATATT+TGG	0.219456	8_2:-3356254	Msa1227940:three_prime_UTR
TCATCTCCTTTGCAACAATT+AGG	0.226762	8_2:+3355969	None:intergenic
GATTAAAACACAGGACAAAT+TGG	0.265846	8_2:-3357969	Msa1227940:intron
CCAGCATTAGAGGCACTTAA+AGG	0.277108	8_2:-3357864	Msa1227940:CDS
ATTAGAGCATTTGTATTTGC+TGG	0.287739	8_2:+3357232	None:intergenic
AATTAGTTGCTGATGATAAT+TGG	0.294423	8_2:-3356994	Msa1227940:intron
CATCTCCTTTGCAACAATTA+GGG	0.299962	8_2:+3355970	None:intergenic
CAGCTTCCTTGCTTTGATAA+TGG	0.303489	8_2:+3356781	None:intergenic
CATTTAGCTTCTCAGAGATT+TGG	0.316171	8_2:+3357131	None:intergenic
GGATGTTAACATTGCTGTTA+TGG	0.320450	8_2:-3357646	Msa1227940:CDS
TGATATTGAACCAGCATTAG+AGG	0.332040	8_2:-3357874	Msa1227940:CDS
GTGTATTCTGATGGATCTTA+TGG	0.333768	8_2:-3356586	Msa1227940:CDS
GCTGCTTTCCCACTTCTTAG+AGG	0.334277	8_2:-3357819	Msa1227940:intron
TCTCCTTTGTCACATGTAAC+AGG	0.337906	8_2:+3356535	None:intergenic
GTTTCCAAGAACCAAATATA+CGG	0.338070	8_2:+3356243	None:intergenic
CTTGCGATCATATTCGTGAT+TGG	0.341095	8_2:-3356730	Msa1227940:CDS
GACACCGTATATTTGGTTCT+TGG	0.342672	8_2:-3356247	Msa1227940:three_prime_UTR
GCAAAATTACAGGTTGATTT+GGG	0.351194	8_2:+3357904	None:intergenic
CTTGATCATAATAGAGCATT+AGG	0.352322	8_2:-3357154	Msa1227940:CDS
CTAATTCTCTGACATGCTTC+TGG	0.371163	8_2:+3357011	None:intergenic
CAAGGCTCAAGCTTCAGCTT+TGG	0.381754	8_2:-3357556	Msa1227940:CDS
TCAAGCATATGCAAAATTAC+AGG	0.382709	8_2:+3357894	None:intergenic
TGTGTTGTACACTCTAGTTT+AGG	0.384161	8_2:-3356033	Msa1227940:three_prime_UTR
ATCATCCCTCTTGCTATCAT+TGG	0.393430	8_2:+3357933	None:intergenic
GAAGAGTTAGAAAGTTTGTA+AGG	0.400829	8_2:-3356214	Msa1227940:three_prime_UTR
AGCATTTGTATTTGCTGGAT+TGG	0.420149	8_2:+3357237	None:intergenic
TTGCGATCATATTCGTGATT+GGG	0.420157	8_2:-3356729	Msa1227940:CDS
GGCTCAAGCTTCAGCTTTGG+AGG	0.422591	8_2:-3357553	Msa1227940:CDS
AACATTGCTGTTATGGTTGG+TGG	0.430741	8_2:-3357639	Msa1227940:CDS
CTTTCCATTCCTTCCTTCCG+TGG	0.437314	8_2:+3357612	None:intergenic
CAGCATTAGAGGCACTTAAA+GGG	0.439157	8_2:-3357863	Msa1227940:CDS
CCTTTAAGTGCCTCTAATGC+TGG	0.442041	8_2:+3357864	None:intergenic
GCAACCGTGGCAACAAGAAA+TGG	0.443310	8_2:-3357034	Msa1227940:CDS
TCAGGGAACATGGGTATCAA+TGG	0.455290	8_2:-3356611	Msa1227940:intron
CTGGCCATTTCTTGTTGCCA+CGG	0.472941	8_2:+3357030	None:intergenic
ATAGCAAGAGGGATGATGTT+AGG	0.473050	8_2:-3357927	Msa1227940:CDS
TTGATCTATTTCAGGGAACA+TGG	0.477408	8_2:-3356621	Msa1227940:intron
TATAGGTGTTGTTGCTACTA+CGG	0.487099	8_2:-3357688	Msa1227940:intron
GGCACTTAAAGGGGTGAAGA+TGG	0.489594	8_2:-3357853	Msa1227940:CDS
GTTAACATTGCTGTTATGGT+TGG	0.495278	8_2:-3357642	Msa1227940:CDS
TGAATTCTCAAGGGAAAAGA+TGG	0.497373	8_2:-3356370	Msa1227940:CDS
TAAGAATGTTTCAATTTACA+AGG	0.500824	8_2:-3357574	Msa1227940:CDS
TTCTTGTTGCCACGGTTGCA+TGG	0.502705	8_2:+3357038	None:intergenic
GAAAGAACCGGTCACCGTAT+TGG	0.503989	8_2:-3358341	Msa1227940:CDS
TTTCCATTCCTTCCTTCCGT+GGG	0.509336	8_2:+3357613	None:intergenic
CAGGGAACATGGGTATCAAT+GGG	0.511230	8_2:-3356610	Msa1227940:CDS
TATCACCCTAATTGTTGCAA+AGG	0.511981	8_2:-3355975	None:intergenic
ACGGTTGCATGGTTGACGTC+TGG	0.512596	8_2:+3357049	None:intergenic
TCTCAAAGTTGAGAAAGAAC+CGG	0.521257	8_2:-3358353	Msa1227940:CDS
TCACAACTGTTCAGCAGCGT+GGG	0.522667	8_2:-3356808	Msa1227940:CDS
GTATTGGTCACTGGTGCTGC+AGG	0.525951	8_2:-3358325	Msa1227940:intron
GTTGTACACTCTAGTTTAGG+AGG	0.538077	8_2:-3356030	Msa1227940:three_prime_UTR
CCGGTCACCGTATTGGTCAC+TGG	0.538505	8_2:-3358334	Msa1227940:CDS
TTACATGTGACAAAGGAGAA+TGG	0.562455	8_2:-3356531	Msa1227940:CDS
TCAAGATTGATGAATTCTCA+AGG	0.563770	8_2:-3356380	Msa1227940:CDS
ATCACAACTGTTCAGCAGCG+TGG	0.564705	8_2:-3356809	Msa1227940:CDS
CCAGTGACCAATACGGTGAC+CGG	0.566136	8_2:+3358334	None:intergenic
GGTGGATTCCCACGGAAGGA+AGG	0.567363	8_2:-3357621	Msa1227940:CDS
GGATCTTATGGTATCCAACC+TGG	0.573108	8_2:-3356574	Msa1227940:CDS
TTGGGTTCTAGGTACACCTA+AGG	0.583834	8_2:-3356711	Msa1227940:intron
TTATGGTTGGTGGATTCCCA+CGG	0.584515	8_2:-3357629	Msa1227940:CDS
TGATCTATTTCAGGGAACAT+GGG	0.587962	8_2:-3356620	Msa1227940:intron
CACAACTGTTCAGCAGCGTG+GGG	0.588509	8_2:-3356807	Msa1227940:CDS
TCAATGGGAGTGTATTCTGA+TGG	0.591080	8_2:-3356595	Msa1227940:CDS
AAGAGTAAATGAGACCAGGT+TGG	0.593344	8_2:+3356560	None:intergenic
TTGTACACTCTAGTTTAGGA+GGG	0.594174	8_2:-3356029	Msa1227940:three_prime_UTR
TTTCCTGTTACATGTGACAA+AGG	0.594930	8_2:-3356538	Msa1227940:CDS
AAAACATGCCTCTAAGAAGT+GGG	0.598346	8_2:+3357811	None:intergenic
ATTCCCACGGAAGGAAGGAA+TGG	0.604648	8_2:-3357616	Msa1227940:CDS
TGCAGCACCAGTGACCAATA+CGG	0.612142	8_2:+3358327	None:intergenic
CTTGTTCCAATGATAGCAAG+AGG	0.618184	8_2:-3357939	Msa1227940:CDS
GGATGTTGTTGAAGCTTGCA+AGG	0.620315	8_2:-3357667	Msa1227940:CDS
GCTCATTGAGGAGAAAACAT+TGG	0.620815	8_2:-3356331	Msa1227940:CDS
AGCATTAGAGGCACTTAAAG+GGG	0.621633	8_2:-3357862	Msa1227940:CDS
TGTACACTCTAGTTTAGGAG+GGG	0.625534	8_2:-3356028	Msa1227940:three_prime_UTR
CAAGATTGATGAATTCTCAA+GGG	0.626012	8_2:-3356379	Msa1227940:CDS
GGAGAATGGAACATTGTACA+AGG	0.636027	8_2:-3356517	Msa1227940:intron
GGTTGGTGGATTCCCACGGA+AGG	0.640456	8_2:-3357625	Msa1227940:CDS
AACAGCTCAAGAGCTCATTG+AGG	0.646195	8_2:-3356343	Msa1227940:CDS
GGAAAAGAGTAAATGAGACC+AGG	0.651573	8_2:+3356556	None:intergenic
GGGGTGCCATTATCAAAGCA+AGG	0.653347	8_2:-3356787	Msa1227940:CDS
GACGTCTGGATATTGAGTTG+AGG	0.679778	8_2:+3357063	None:intergenic
AGACGTCAACCATGCAACCG+TGG	0.680021	8_2:-3357047	Msa1227940:CDS
TTGTTCCAATGATAGCAAGA+GGG	0.692772	8_2:-3357938	Msa1227940:CDS
ACAACTGTTCAGCAGCGTGG+GGG	0.720838	8_2:-3356806	Msa1227940:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTACTATATTGATTTTTAT+TGG	+	chr8_2:3356242-3356261	None:intergenic	10.0%
!!	TTAATCAAATCAAAATTAAA+AGG	+	chr8_2:3356359-3356378	None:intergenic	10.0%
!!!	TTTACTATATTGATTTTTAT+TGG	+	chr8_2:3356242-3356261	None:intergenic	10.0%
!!	TTAATCAAATCAAAATTAAA+AGG	+	chr8_2:3356359-3356378	None:intergenic	10.0%
!!	TGCATATAAAAATGTAATAT+AGG	-	chr8_2:3356637-3356656	Msa1227940:intron	15.0%
!!!	CATTTTTTTTGTGAAATTAA+AGG	+	chr8_2:3358047-3358066	None:intergenic	15.0%
!!	TGCATATAAAAATGTAATAT+AGG	-	chr8_2:3356637-3356656	Msa1227940:intron	15.0%
!!!	CATTTTTTTTGTGAAATTAA+AGG	+	chr8_2:3358047-3358066	None:intergenic	15.0%
!!	ACATAAATTTAAAAATCCAC+AGG	-	chr8_2:3356141-3356160	Msa1227940:three_prime_UTR	20.0%
!!	CATAAATTTAAAAATCCACA+GGG	-	chr8_2:3356142-3356161	Msa1227940:three_prime_UTR	20.0%
!!!	TTTTGATTTGATTAAAACAC+AGG	-	chr8_2:3356364-3356383	Msa1227940:CDS	20.0%
!!	TAAGAATGTTTCAATTTACA+AGG	-	chr8_2:3356768-3356787	Msa1227940:CDS	20.0%
!!!	GACATGTTATATTTTTATCA+GGG	+	chr8_2:3357160-3357179	None:intergenic	20.0%
!!!	AGACATGTTATATTTTTATC+AGG	+	chr8_2:3357161-3357180	None:intergenic	20.0%
!!	ATGTGAAAAATGTTATCATT+TGG	-	chr8_2:3357246-3357265	Msa1227940:CDS	20.0%
!!	TGTGAAAAATGTTATCATTT+GGG	-	chr8_2:3357247-3357266	Msa1227940:CDS	20.0%
!!!	ATATATTTTTCTTGTGTGTT+AGG	-	chr8_2:3357495-3357514	Msa1227940:intron	20.0%
!!	TATTTACTTTGATCTATTTC+AGG	-	chr8_2:3357713-3357732	Msa1227940:intron	20.0%
!!	ATTTACTTTGATCTATTTCA+GGG	-	chr8_2:3357714-3357733	Msa1227940:intron	20.0%
!!	TTATGTTATGATAATTTGAC+AGG	-	chr8_2:3357937-3357956	Msa1227940:CDS	20.0%
!!	TATGTTATGATAATTTGACA+GGG	-	chr8_2:3357938-3357957	Msa1227940:CDS	20.0%
!!!	TGAAGATTTGTTATTTTAGA+AGG	-	chr8_2:3358276-3358295	Msa1227940:intron	20.0%
!!	ACATAAATTTAAAAATCCAC+AGG	-	chr8_2:3356141-3356160	Msa1227940:three_prime_UTR	20.0%
!!	CATAAATTTAAAAATCCACA+GGG	-	chr8_2:3356142-3356161	Msa1227940:three_prime_UTR	20.0%
!!!	TTTTGATTTGATTAAAACAC+AGG	-	chr8_2:3356364-3356383	Msa1227940:CDS	20.0%
!!	TAAGAATGTTTCAATTTACA+AGG	-	chr8_2:3356768-3356787	Msa1227940:CDS	20.0%
!!!	GACATGTTATATTTTTATCA+GGG	+	chr8_2:3357160-3357179	None:intergenic	20.0%
!!!	AGACATGTTATATTTTTATC+AGG	+	chr8_2:3357161-3357180	None:intergenic	20.0%
!!	ATGTGAAAAATGTTATCATT+TGG	-	chr8_2:3357246-3357265	Msa1227940:CDS	20.0%
!!	TGTGAAAAATGTTATCATTT+GGG	-	chr8_2:3357247-3357266	Msa1227940:CDS	20.0%
!!!	ATATATTTTTCTTGTGTGTT+AGG	-	chr8_2:3357495-3357514	Msa1227940:intron	20.0%
!!	TATTTACTTTGATCTATTTC+AGG	-	chr8_2:3357713-3357732	Msa1227940:intron	20.0%
!!	ATTTACTTTGATCTATTTCA+GGG	-	chr8_2:3357714-3357733	Msa1227940:intron	20.0%
!!	TTATGTTATGATAATTTGAC+AGG	-	chr8_2:3357937-3357956	Msa1227940:CDS	20.0%
!!	TATGTTATGATAATTTGACA+GGG	-	chr8_2:3357938-3357957	Msa1227940:CDS	20.0%
!!!	TGAAGATTTGTTATTTTAGA+AGG	-	chr8_2:3358276-3358295	Msa1227940:intron	20.0%
!!	TGTGTTCTTAGTTGAAATTT+TGG	-	chr8_2:3356055-3356074	Msa1227940:three_prime_UTR	25.0%
!!!	TTGAAATTTTGGTTAACCTT+AGG	-	chr8_2:3356066-3356085	Msa1227940:three_prime_UTR	25.0%
!!!	GCTTTATTTGCAATGTAATA+TGG	+	chr8_2:3356110-3356129	None:intergenic	25.0%
!	CAATTAATCATATTCCATCA+TGG	-	chr8_2:3356578-3356597	Msa1227940:CDS	25.0%
!	ATTCATAAAGAAAACCATGA+TGG	+	chr8_2:3356595-3356614	None:intergenic	25.0%
!	ACCTAACTATACTATAAAGA+GGG	+	chr8_2:3356856-3356875	None:intergenic	25.0%
!	AACCTAACTATACTATAAAG+AGG	+	chr8_2:3356857-3356876	None:intergenic	25.0%
!	AGGTTCATAAAAAATCAGTT+AGG	-	chr8_2:3356872-3356891	Msa1227940:intron	25.0%
!	AAAATCAGTTAGGTTTGAAA+AGG	-	chr8_2:3356882-3356901	Msa1227940:intron	25.0%
!	CCAAAACTTTATACCAATTT+GGG	-	chr8_2:3356952-3356971	Msa1227940:intron	25.0%
!	AAGACTGAACTGTTAATTAA+TGG	+	chr8_2:3356988-3357007	None:intergenic	25.0%
!!	TTCCAATTATTTCTTAATGC+AGG	-	chr8_2:3357070-3357089	Msa1227940:CDS	25.0%
!!!	ATATTTTTATCAGGGATTGA+TGG	+	chr8_2:3357152-3357171	None:intergenic	25.0%
!	GTGAAAAATGTTATCATTTG+GGG	-	chr8_2:3357248-3357267	Msa1227940:CDS	25.0%
!	AATTAGTTGCTGATGATAAT+TGG	-	chr8_2:3357348-3357367	Msa1227940:intron	25.0%
!	AATTAAGAAAAACGAACCTT+AGG	+	chr8_2:3357650-3357669	None:intergenic	25.0%
!!	TACTATTGTTATGTCTTTTG+TGG	-	chr8_2:3358244-3358263	Msa1227940:intron	25.0%
!!!	AATCTCATCTGATTTTAGAA+GGG	+	chr8_2:3358347-3358366	None:intergenic	25.0%
!!	AAATCTCATCTGATTTTAGA+AGG	+	chr8_2:3358348-3358367	None:intergenic	25.0%
!!	TGTGTTCTTAGTTGAAATTT+TGG	-	chr8_2:3356055-3356074	Msa1227940:three_prime_UTR	25.0%
!!!	TTGAAATTTTGGTTAACCTT+AGG	-	chr8_2:3356066-3356085	Msa1227940:three_prime_UTR	25.0%
!!!	GCTTTATTTGCAATGTAATA+TGG	+	chr8_2:3356110-3356129	None:intergenic	25.0%
!	CAATTAATCATATTCCATCA+TGG	-	chr8_2:3356578-3356597	Msa1227940:CDS	25.0%
!	ATTCATAAAGAAAACCATGA+TGG	+	chr8_2:3356595-3356614	None:intergenic	25.0%
!	ACCTAACTATACTATAAAGA+GGG	+	chr8_2:3356856-3356875	None:intergenic	25.0%
!	AACCTAACTATACTATAAAG+AGG	+	chr8_2:3356857-3356876	None:intergenic	25.0%
!	AGGTTCATAAAAAATCAGTT+AGG	-	chr8_2:3356872-3356891	Msa1227940:intron	25.0%
!	AAAATCAGTTAGGTTTGAAA+AGG	-	chr8_2:3356882-3356901	Msa1227940:intron	25.0%
!	CCAAAACTTTATACCAATTT+GGG	-	chr8_2:3356952-3356971	Msa1227940:intron	25.0%
!	AAGACTGAACTGTTAATTAA+TGG	+	chr8_2:3356988-3357007	None:intergenic	25.0%
!!	TTCCAATTATTTCTTAATGC+AGG	-	chr8_2:3357070-3357089	Msa1227940:CDS	25.0%
!!!	ATATTTTTATCAGGGATTGA+TGG	+	chr8_2:3357152-3357171	None:intergenic	25.0%
!	GTGAAAAATGTTATCATTTG+GGG	-	chr8_2:3357248-3357267	Msa1227940:CDS	25.0%
!	AATTAGTTGCTGATGATAAT+TGG	-	chr8_2:3357348-3357367	Msa1227940:intron	25.0%
!	AATTAAGAAAAACGAACCTT+AGG	+	chr8_2:3357650-3357669	None:intergenic	25.0%
!!	TACTATTGTTATGTCTTTTG+TGG	-	chr8_2:3358244-3358263	Msa1227940:intron	25.0%
!!!	AATCTCATCTGATTTTAGAA+GGG	+	chr8_2:3358347-3358366	None:intergenic	25.0%
!!	AAATCTCATCTGATTTTAGA+AGG	+	chr8_2:3358348-3358367	None:intergenic	25.0%
	CAAAAATATGTGACTTCCTA+AGG	+	chr8_2:3356085-3356104	None:intergenic	30.0%
	GATTAAAACACAGGACAAAT+TGG	-	chr8_2:3356373-3356392	Msa1227940:CDS	30.0%
!!	GCAAAATTACAGGTTGATTT+GGG	+	chr8_2:3356441-3356460	None:intergenic	30.0%
!!	TGCAAAATTACAGGTTGATT+TGG	+	chr8_2:3356442-3356461	None:intergenic	30.0%
	TCAAGCATATGCAAAATTAC+AGG	+	chr8_2:3356451-3356470	None:intergenic	30.0%
	ACCCTCTTTATAGTATAGTT+AGG	-	chr8_2:3356852-3356871	Msa1227940:intron	30.0%
	GCCAAAACTTTATACCAATT+TGG	-	chr8_2:3356951-3356970	Msa1227940:intron	30.0%
!	CCCAAATTGGTATAAAGTTT+TGG	+	chr8_2:3356955-3356974	None:intergenic	30.0%
	GAAAGGAAATTATAACTACC+TGG	+	chr8_2:3357012-3357031	None:intergenic	30.0%
	ATCAAGATTAGGATTGTTCA+TGG	+	chr8_2:3357044-3357063	None:intergenic	30.0%
	TGGAAGATACAATCAAGATT+AGG	+	chr8_2:3357055-3357074	None:intergenic	30.0%
	CACCTGCATTAAGAAATAAT+TGG	+	chr8_2:3357075-3357094	None:intergenic	30.0%
!	ATTAGAGCATTTGTATTTGC+TGG	+	chr8_2:3357113-3357132	None:intergenic	30.0%
!	CTTGATCATAATAGAGCATT+AGG	-	chr8_2:3357188-3357207	Msa1227940:CDS	30.0%
	AATAAAGCACAAAGCATAAG+TGG	+	chr8_2:3357697-3357716	None:intergenic	30.0%
!!	TTCCTAGTTCTAGCAAATAA+CGG	-	chr8_2:3357876-3357895	Msa1227940:CDS	30.0%
!	CATAACTGATTTCTTCATCA+AGG	+	chr8_2:3357922-3357941	None:intergenic	30.0%
	TCAAGATTGATGAATTCTCA+AGG	-	chr8_2:3357962-3357981	Msa1227940:intron	30.0%
	CAAGATTGATGAATTCTCAA+GGG	-	chr8_2:3357963-3357982	Msa1227940:intron	30.0%
	AAAAAAGGGTAGTCAATTCA+AGG	+	chr8_2:3358070-3358089	None:intergenic	30.0%
!	TACGGTGTCAACTTAAAAAA+GGG	+	chr8_2:3358084-3358103	None:intergenic	30.0%
!	ATACGGTGTCAACTTAAAAA+AGG	+	chr8_2:3358085-3358104	None:intergenic	30.0%
!!	TTAAGTTGACACCGTATATT+TGG	-	chr8_2:3358088-3358107	Msa1227940:intron	30.0%
	GTTTCCAAGAACCAAATATA+CGG	+	chr8_2:3358102-3358121	None:intergenic	30.0%
	GAAGAGTTAGAAAGTTTGTA+AGG	-	chr8_2:3358128-3358147	Msa1227940:intron	30.0%
	CAAAAATATGTGACTTCCTA+AGG	+	chr8_2:3356085-3356104	None:intergenic	30.0%
	GATTAAAACACAGGACAAAT+TGG	-	chr8_2:3356373-3356392	Msa1227940:CDS	30.0%
!!	GCAAAATTACAGGTTGATTT+GGG	+	chr8_2:3356441-3356460	None:intergenic	30.0%
!!	TGCAAAATTACAGGTTGATT+TGG	+	chr8_2:3356442-3356461	None:intergenic	30.0%
	TCAAGCATATGCAAAATTAC+AGG	+	chr8_2:3356451-3356470	None:intergenic	30.0%
	ACCCTCTTTATAGTATAGTT+AGG	-	chr8_2:3356852-3356871	Msa1227940:intron	30.0%
	GCCAAAACTTTATACCAATT+TGG	-	chr8_2:3356951-3356970	Msa1227940:intron	30.0%
!	CCCAAATTGGTATAAAGTTT+TGG	+	chr8_2:3356955-3356974	None:intergenic	30.0%
	GAAAGGAAATTATAACTACC+TGG	+	chr8_2:3357012-3357031	None:intergenic	30.0%
	ATCAAGATTAGGATTGTTCA+TGG	+	chr8_2:3357044-3357063	None:intergenic	30.0%
	TGGAAGATACAATCAAGATT+AGG	+	chr8_2:3357055-3357074	None:intergenic	30.0%
	CACCTGCATTAAGAAATAAT+TGG	+	chr8_2:3357075-3357094	None:intergenic	30.0%
!	ATTAGAGCATTTGTATTTGC+TGG	+	chr8_2:3357113-3357132	None:intergenic	30.0%
!	CTTGATCATAATAGAGCATT+AGG	-	chr8_2:3357188-3357207	Msa1227940:CDS	30.0%
	AATAAAGCACAAAGCATAAG+TGG	+	chr8_2:3357697-3357716	None:intergenic	30.0%
!!	TTCCTAGTTCTAGCAAATAA+CGG	-	chr8_2:3357876-3357895	Msa1227940:CDS	30.0%
!	CATAACTGATTTCTTCATCA+AGG	+	chr8_2:3357922-3357941	None:intergenic	30.0%
	TCAAGATTGATGAATTCTCA+AGG	-	chr8_2:3357962-3357981	Msa1227940:intron	30.0%
	CAAGATTGATGAATTCTCAA+GGG	-	chr8_2:3357963-3357982	Msa1227940:intron	30.0%
	AAAAAAGGGTAGTCAATTCA+AGG	+	chr8_2:3358070-3358089	None:intergenic	30.0%
!	TACGGTGTCAACTTAAAAAA+GGG	+	chr8_2:3358084-3358103	None:intergenic	30.0%
!	ATACGGTGTCAACTTAAAAA+AGG	+	chr8_2:3358085-3358104	None:intergenic	30.0%
!!	TTAAGTTGACACCGTATATT+TGG	-	chr8_2:3358088-3358107	Msa1227940:intron	30.0%
	GTTTCCAAGAACCAAATATA+CGG	+	chr8_2:3358102-3358121	None:intergenic	30.0%
	GAAGAGTTAGAAAGTTTGTA+AGG	-	chr8_2:3358128-3358147	Msa1227940:intron	30.0%
	TCTCAAAGTTGAGAAAGAAC+CGG	-	chr8_2:3355989-3356008	Msa1227940:three_prime_UTR	35.0%
	TTGTTCCAATGATAGCAAGA+GGG	-	chr8_2:3356404-3356423	Msa1227940:intron	35.0%
	TGATATTGAACCAGCATTAG+AGG	-	chr8_2:3356468-3356487	Msa1227940:intron	35.0%
!	AAAACATGCCTCTAAGAAGT+GGG	+	chr8_2:3356534-3356553	None:intergenic	35.0%
!	AAAAACATGCCTCTAAGAAG+TGG	+	chr8_2:3356535-3356554	None:intergenic	35.0%
!!	TATAGGTGTTGTTGCTACTA+CGG	-	chr8_2:3356654-3356673	Msa1227940:intron	35.0%
!	GGATGTTAACATTGCTGTTA+TGG	-	chr8_2:3356696-3356715	Msa1227940:intron	35.0%
!	GTTAACATTGCTGTTATGGT+TGG	-	chr8_2:3356700-3356719	Msa1227940:intron	35.0%
!	ACCATCATGGTTTTCTGTAA+AGG	-	chr8_2:3356906-3356925	Msa1227940:intron	35.0%
	ACCTTTACAGAAAACCATGA+TGG	+	chr8_2:3356910-3356929	None:intergenic	35.0%
	ATTAACAGTTCAGTCTTACC+AGG	-	chr8_2:3356991-3357010	Msa1227940:intron	35.0%
!!	GTTCATGGTTTGGTTTAGAA+AGG	+	chr8_2:3357029-3357048	None:intergenic	35.0%
	GATTAGGATTGTTCATGGTT+TGG	+	chr8_2:3357039-3357058	None:intergenic	35.0%
!	AGCATTTGTATTTGCTGGAT+TGG	+	chr8_2:3357108-3357127	None:intergenic	35.0%
!	CATTTAGCTTCTCAGAGATT+TGG	+	chr8_2:3357214-3357233	None:intergenic	35.0%
!	ATTGAGAAGGTTTGAAACTG+AGG	+	chr8_2:3357376-3357395	None:intergenic	35.0%
	CAAAGATAGTCAGATTGAGA+AGG	+	chr8_2:3357389-3357408	None:intergenic	35.0%
!	TGGAATATTTAGAGCATGGA+TGG	+	chr8_2:3357430-3357449	None:intergenic	35.0%
!	TGCATGGAATATTTAGAGCA+TGG	+	chr8_2:3357434-3357453	None:intergenic	35.0%
	ACACTTAATTTCCTAGCTAG+TGG	+	chr8_2:3357475-3357494	None:intergenic	35.0%
	TTGCGATCATATTCGTGATT+GGG	-	chr8_2:3357613-3357632	Msa1227940:CDS	35.0%
	TTGATCTATTTCAGGGAACA+TGG	-	chr8_2:3357721-3357740	Msa1227940:intron	35.0%
	TGATCTATTTCAGGGAACAT+GGG	-	chr8_2:3357722-3357741	Msa1227940:intron	35.0%
!	GTGTATTCTGATGGATCTTA+TGG	-	chr8_2:3357756-3357775	Msa1227940:intron	35.0%
	TTTCCTGTTACATGTGACAA+AGG	-	chr8_2:3357804-3357823	Msa1227940:intron	35.0%
	TTACATGTGACAAAGGAGAA+TGG	-	chr8_2:3357811-3357830	Msa1227940:intron	35.0%
	TGAATTCTCAAGGGAAAAGA+TGG	-	chr8_2:3357972-3357991	Msa1227940:intron	35.0%
!	TGTGTTGTACACTCTAGTTT+AGG	-	chr8_2:3358309-3358328	Msa1227940:intron	35.0%
!	TTGTACACTCTAGTTTAGGA+GGG	-	chr8_2:3358313-3358332	Msa1227940:intron	35.0%
	TCTCAAAGTTGAGAAAGAAC+CGG	-	chr8_2:3355989-3356008	Msa1227940:three_prime_UTR	35.0%
	TTGTTCCAATGATAGCAAGA+GGG	-	chr8_2:3356404-3356423	Msa1227940:intron	35.0%
	TGATATTGAACCAGCATTAG+AGG	-	chr8_2:3356468-3356487	Msa1227940:intron	35.0%
!	AAAACATGCCTCTAAGAAGT+GGG	+	chr8_2:3356534-3356553	None:intergenic	35.0%
!	AAAAACATGCCTCTAAGAAG+TGG	+	chr8_2:3356535-3356554	None:intergenic	35.0%
!!	TATAGGTGTTGTTGCTACTA+CGG	-	chr8_2:3356654-3356673	Msa1227940:intron	35.0%
!	GGATGTTAACATTGCTGTTA+TGG	-	chr8_2:3356696-3356715	Msa1227940:intron	35.0%
!	GTTAACATTGCTGTTATGGT+TGG	-	chr8_2:3356700-3356719	Msa1227940:intron	35.0%
!	ACCATCATGGTTTTCTGTAA+AGG	-	chr8_2:3356906-3356925	Msa1227940:intron	35.0%
	ACCTTTACAGAAAACCATGA+TGG	+	chr8_2:3356910-3356929	None:intergenic	35.0%
	ATTAACAGTTCAGTCTTACC+AGG	-	chr8_2:3356991-3357010	Msa1227940:intron	35.0%
!!	GTTCATGGTTTGGTTTAGAA+AGG	+	chr8_2:3357029-3357048	None:intergenic	35.0%
	GATTAGGATTGTTCATGGTT+TGG	+	chr8_2:3357039-3357058	None:intergenic	35.0%
!	AGCATTTGTATTTGCTGGAT+TGG	+	chr8_2:3357108-3357127	None:intergenic	35.0%
!	CATTTAGCTTCTCAGAGATT+TGG	+	chr8_2:3357214-3357233	None:intergenic	35.0%
!	ATTGAGAAGGTTTGAAACTG+AGG	+	chr8_2:3357376-3357395	None:intergenic	35.0%
	CAAAGATAGTCAGATTGAGA+AGG	+	chr8_2:3357389-3357408	None:intergenic	35.0%
!	TGGAATATTTAGAGCATGGA+TGG	+	chr8_2:3357430-3357449	None:intergenic	35.0%
!	TGCATGGAATATTTAGAGCA+TGG	+	chr8_2:3357434-3357453	None:intergenic	35.0%
	ACACTTAATTTCCTAGCTAG+TGG	+	chr8_2:3357475-3357494	None:intergenic	35.0%
	TTGCGATCATATTCGTGATT+GGG	-	chr8_2:3357613-3357632	Msa1227940:CDS	35.0%
	TTGATCTATTTCAGGGAACA+TGG	-	chr8_2:3357721-3357740	Msa1227940:intron	35.0%
	TGATCTATTTCAGGGAACAT+GGG	-	chr8_2:3357722-3357741	Msa1227940:intron	35.0%
!	GTGTATTCTGATGGATCTTA+TGG	-	chr8_2:3357756-3357775	Msa1227940:intron	35.0%
	TTTCCTGTTACATGTGACAA+AGG	-	chr8_2:3357804-3357823	Msa1227940:intron	35.0%
	TTACATGTGACAAAGGAGAA+TGG	-	chr8_2:3357811-3357830	Msa1227940:intron	35.0%
	TGAATTCTCAAGGGAAAAGA+TGG	-	chr8_2:3357972-3357991	Msa1227940:intron	35.0%
!	TGTGTTGTACACTCTAGTTT+AGG	-	chr8_2:3358309-3358328	Msa1227940:intron	35.0%
!	TTGTACACTCTAGTTTAGGA+GGG	-	chr8_2:3358313-3358332	Msa1227940:intron	35.0%
	TGATGAATCTCAATGGATCG+TGG	+	chr8_2:3356197-3356216	None:intergenic	40.0%
	CGACATGTGATGAATCTCAA+TGG	+	chr8_2:3356204-3356223	None:intergenic	40.0%
	CTTGTTCCAATGATAGCAAG+AGG	-	chr8_2:3356403-3356422	Msa1227940:intron	40.0%
!	ATCATCCCTCTTGCTATCAT+TGG	+	chr8_2:3356412-3356431	None:intergenic	40.0%
	ATAGCAAGAGGGATGATGTT+AGG	-	chr8_2:3356415-3356434	Msa1227940:intron	40.0%
!!	CAGCATTAGAGGCACTTAAA+GGG	-	chr8_2:3356479-3356498	Msa1227940:intron	40.0%
!!	AGCATTAGAGGCACTTAAAG+GGG	-	chr8_2:3356480-3356499	Msa1227940:intron	40.0%
!	AACATTGCTGTTATGGTTGG+TGG	-	chr8_2:3356703-3356722	Msa1227940:intron	40.0%
	CTAATTCTCTGACATGCTTC+TGG	+	chr8_2:3357334-3357353	None:intergenic	40.0%
	CAGCTTCCTTGCTTTGATAA+TGG	+	chr8_2:3357564-3357583	None:intergenic	40.0%
	CTTGCGATCATATTCGTGAT+TGG	-	chr8_2:3357612-3357631	Msa1227940:CDS	40.0%
	CATATTCGTGATTGGGTTCT+AGG	-	chr8_2:3357620-3357639	Msa1227940:CDS	40.0%
!	TCAATGGGAGTGTATTCTGA+TGG	-	chr8_2:3357747-3357766	Msa1227940:intron	40.0%
	AAGAGTAAATGAGACCAGGT+TGG	+	chr8_2:3357785-3357804	None:intergenic	40.0%
	GGAAAAGAGTAAATGAGACC+AGG	+	chr8_2:3357789-3357808	None:intergenic	40.0%
	TCTCCTTTGTCACATGTAAC+AGG	+	chr8_2:3357810-3357829	None:intergenic	40.0%
	GGAGAATGGAACATTGTACA+AGG	-	chr8_2:3357825-3357844	Msa1227940:CDS	40.0%
!	GACCGTTATTTGCTAGAACT+AGG	+	chr8_2:3357881-3357900	None:intergenic	40.0%
	GCTCATTGAGGAGAAAACAT+TGG	-	chr8_2:3358011-3358030	Msa1227940:intron	40.0%
!!	GACACCGTATATTTGGTTCT+TGG	-	chr8_2:3358095-3358114	Msa1227940:intron	40.0%
!	GTTGTACACTCTAGTTTAGG+AGG	-	chr8_2:3358312-3358331	Msa1227940:intron	40.0%
!	TGTACACTCTAGTTTAGGAG+GGG	-	chr8_2:3358314-3358333	Msa1227940:intron	40.0%
	TGATGAATCTCAATGGATCG+TGG	+	chr8_2:3356197-3356216	None:intergenic	40.0%
	CGACATGTGATGAATCTCAA+TGG	+	chr8_2:3356204-3356223	None:intergenic	40.0%
	CTTGTTCCAATGATAGCAAG+AGG	-	chr8_2:3356403-3356422	Msa1227940:intron	40.0%
!	ATCATCCCTCTTGCTATCAT+TGG	+	chr8_2:3356412-3356431	None:intergenic	40.0%
	ATAGCAAGAGGGATGATGTT+AGG	-	chr8_2:3356415-3356434	Msa1227940:intron	40.0%
!!	CAGCATTAGAGGCACTTAAA+GGG	-	chr8_2:3356479-3356498	Msa1227940:intron	40.0%
!!	AGCATTAGAGGCACTTAAAG+GGG	-	chr8_2:3356480-3356499	Msa1227940:intron	40.0%
!	AACATTGCTGTTATGGTTGG+TGG	-	chr8_2:3356703-3356722	Msa1227940:intron	40.0%
	CTAATTCTCTGACATGCTTC+TGG	+	chr8_2:3357334-3357353	None:intergenic	40.0%
	CAGCTTCCTTGCTTTGATAA+TGG	+	chr8_2:3357564-3357583	None:intergenic	40.0%
	CTTGCGATCATATTCGTGAT+TGG	-	chr8_2:3357612-3357631	Msa1227940:CDS	40.0%
	CATATTCGTGATTGGGTTCT+AGG	-	chr8_2:3357620-3357639	Msa1227940:CDS	40.0%
!	TCAATGGGAGTGTATTCTGA+TGG	-	chr8_2:3357747-3357766	Msa1227940:intron	40.0%
	AAGAGTAAATGAGACCAGGT+TGG	+	chr8_2:3357785-3357804	None:intergenic	40.0%
	GGAAAAGAGTAAATGAGACC+AGG	+	chr8_2:3357789-3357808	None:intergenic	40.0%
	TCTCCTTTGTCACATGTAAC+AGG	+	chr8_2:3357810-3357829	None:intergenic	40.0%
	GGAGAATGGAACATTGTACA+AGG	-	chr8_2:3357825-3357844	Msa1227940:CDS	40.0%
!	GACCGTTATTTGCTAGAACT+AGG	+	chr8_2:3357881-3357900	None:intergenic	40.0%
	GCTCATTGAGGAGAAAACAT+TGG	-	chr8_2:3358011-3358030	Msa1227940:intron	40.0%
!!	GACACCGTATATTTGGTTCT+TGG	-	chr8_2:3358095-3358114	Msa1227940:intron	40.0%
!	GTTGTACACTCTAGTTTAGG+AGG	-	chr8_2:3358312-3358331	Msa1227940:intron	40.0%
!	TGTACACTCTAGTTTAGGAG+GGG	-	chr8_2:3358314-3358333	Msa1227940:intron	40.0%
	TCCACAGGGTAAATTGCAAG+TGG	-	chr8_2:3356156-3356175	Msa1227940:three_prime_UTR	45.0%
	GTAAATTGCAAGTGGCGAAG+TGG	-	chr8_2:3356164-3356183	Msa1227940:three_prime_UTR	45.0%
	CCTTTAAGTGCCTCTAATGC+TGG	+	chr8_2:3356481-3356500	None:intergenic	45.0%
!!	CCAGCATTAGAGGCACTTAA+AGG	-	chr8_2:3356478-3356497	Msa1227940:intron	45.0%
	GGATGTTGTTGAAGCTTGCA+AGG	-	chr8_2:3356675-3356694	Msa1227940:intron	45.0%
!!	TTATGGTTGGTGGATTCCCA+CGG	-	chr8_2:3356713-3356732	Msa1227940:CDS	45.0%
	TTTCCATTCCTTCCTTCCGT+GGG	+	chr8_2:3356732-3356751	None:intergenic	45.0%
!!	GGTTTGAAAAGGCACCATCA+TGG	-	chr8_2:3356893-3356912	Msa1227940:intron	45.0%
!	GACGTCTGGATATTGAGTTG+AGG	+	chr8_2:3357282-3357301	None:intergenic	45.0%
	GAGATTGCTTTGCATGTGCA+TGG	+	chr8_2:3357450-3357469	None:intergenic	45.0%
	AGCAATCTCTTCCACTAGCT+AGG	-	chr8_2:3357461-3357480	Msa1227940:intron	45.0%
!!	TTGGGTTCTAGGTACACCTA+AGG	-	chr8_2:3357631-3357650	Msa1227940:CDS	45.0%
	TCAGGGAACATGGGTATCAA+TGG	-	chr8_2:3357731-3357750	Msa1227940:intron	45.0%
	CAGGGAACATGGGTATCAAT+GGG	-	chr8_2:3357732-3357751	Msa1227940:intron	45.0%
	GGATCTTATGGTATCCAACC+TGG	-	chr8_2:3357768-3357787	Msa1227940:intron	45.0%
	AACAGCTCAAGAGCTCATTG+AGG	-	chr8_2:3357999-3358018	Msa1227940:intron	45.0%
	TCCACAGGGTAAATTGCAAG+TGG	-	chr8_2:3356156-3356175	Msa1227940:three_prime_UTR	45.0%
	GTAAATTGCAAGTGGCGAAG+TGG	-	chr8_2:3356164-3356183	Msa1227940:three_prime_UTR	45.0%
	CCTTTAAGTGCCTCTAATGC+TGG	+	chr8_2:3356481-3356500	None:intergenic	45.0%
!!	CCAGCATTAGAGGCACTTAA+AGG	-	chr8_2:3356478-3356497	Msa1227940:intron	45.0%
	GGATGTTGTTGAAGCTTGCA+AGG	-	chr8_2:3356675-3356694	Msa1227940:intron	45.0%
!!	TTATGGTTGGTGGATTCCCA+CGG	-	chr8_2:3356713-3356732	Msa1227940:CDS	45.0%
	TTTCCATTCCTTCCTTCCGT+GGG	+	chr8_2:3356732-3356751	None:intergenic	45.0%
!!	GGTTTGAAAAGGCACCATCA+TGG	-	chr8_2:3356893-3356912	Msa1227940:intron	45.0%
!	GACGTCTGGATATTGAGTTG+AGG	+	chr8_2:3357282-3357301	None:intergenic	45.0%
	GAGATTGCTTTGCATGTGCA+TGG	+	chr8_2:3357450-3357469	None:intergenic	45.0%
	AGCAATCTCTTCCACTAGCT+AGG	-	chr8_2:3357461-3357480	Msa1227940:intron	45.0%
!!	TTGGGTTCTAGGTACACCTA+AGG	-	chr8_2:3357631-3357650	Msa1227940:CDS	45.0%
	TCAGGGAACATGGGTATCAA+TGG	-	chr8_2:3357731-3357750	Msa1227940:intron	45.0%
	CAGGGAACATGGGTATCAAT+GGG	-	chr8_2:3357732-3357751	Msa1227940:intron	45.0%
	GGATCTTATGGTATCCAACC+TGG	-	chr8_2:3357768-3357787	Msa1227940:intron	45.0%
	AACAGCTCAAGAGCTCATTG+AGG	-	chr8_2:3357999-3358018	Msa1227940:intron	45.0%
	GAAAGAACCGGTCACCGTAT+TGG	-	chr8_2:3356001-3356020	Msa1227940:three_prime_UTR	50.0%
	TGCAGCACCAGTGACCAATA+CGG	+	chr8_2:3356018-3356037	None:intergenic	50.0%
	GCCACTTGCAATTTACCCTG+TGG	+	chr8_2:3356160-3356179	None:intergenic	50.0%
	GGCACTTAAAGGGGTGAAGA+TGG	-	chr8_2:3356489-3356508	Msa1227940:intron	50.0%
!	GCTGCTTTCCCACTTCTTAG+AGG	-	chr8_2:3356523-3356542	Msa1227940:CDS	50.0%
	ATTCCCACGGAAGGAAGGAA+TGG	-	chr8_2:3356726-3356745	Msa1227940:CDS	50.0%
	CTTTCCATTCCTTCCTTCCG+TGG	+	chr8_2:3356733-3356752	None:intergenic	50.0%
	CAAGGCTCAAGCTTCAGCTT+TGG	-	chr8_2:3356786-3356805	Msa1227940:CDS	50.0%
	TGGTTCGTCTCGACCCAAAT+TGG	+	chr8_2:3356968-3356987	None:intergenic	50.0%
	TTCTTGTTGCCACGGTTGCA+TGG	+	chr8_2:3357307-3357326	None:intergenic	50.0%
	GCAACCGTGGCAACAAGAAA+TGG	-	chr8_2:3357308-3357327	Msa1227940:intron	50.0%
	CTGGCCATTTCTTGTTGCCA+CGG	+	chr8_2:3357315-3357334	None:intergenic	50.0%
	ATCACAACTGTTCAGCAGCG+TGG	-	chr8_2:3357533-3357552	Msa1227940:CDS	50.0%
	TCACAACTGTTCAGCAGCGT+GGG	-	chr8_2:3357534-3357553	Msa1227940:CDS	50.0%
!!	GGGGTGCCATTATCAAAGCA+AGG	-	chr8_2:3357555-3357574	Msa1227940:CDS	50.0%
	GAAAGAACCGGTCACCGTAT+TGG	-	chr8_2:3356001-3356020	Msa1227940:three_prime_UTR	50.0%
	TGCAGCACCAGTGACCAATA+CGG	+	chr8_2:3356018-3356037	None:intergenic	50.0%
	GCCACTTGCAATTTACCCTG+TGG	+	chr8_2:3356160-3356179	None:intergenic	50.0%
	GGCACTTAAAGGGGTGAAGA+TGG	-	chr8_2:3356489-3356508	Msa1227940:intron	50.0%
!	GCTGCTTTCCCACTTCTTAG+AGG	-	chr8_2:3356523-3356542	Msa1227940:CDS	50.0%
	ATTCCCACGGAAGGAAGGAA+TGG	-	chr8_2:3356726-3356745	Msa1227940:CDS	50.0%
	CTTTCCATTCCTTCCTTCCG+TGG	+	chr8_2:3356733-3356752	None:intergenic	50.0%
	CAAGGCTCAAGCTTCAGCTT+TGG	-	chr8_2:3356786-3356805	Msa1227940:CDS	50.0%
	TGGTTCGTCTCGACCCAAAT+TGG	+	chr8_2:3356968-3356987	None:intergenic	50.0%
	TTCTTGTTGCCACGGTTGCA+TGG	+	chr8_2:3357307-3357326	None:intergenic	50.0%
	GCAACCGTGGCAACAAGAAA+TGG	-	chr8_2:3357308-3357327	Msa1227940:intron	50.0%
	CTGGCCATTTCTTGTTGCCA+CGG	+	chr8_2:3357315-3357334	None:intergenic	50.0%
	ATCACAACTGTTCAGCAGCG+TGG	-	chr8_2:3357533-3357552	Msa1227940:CDS	50.0%
	TCACAACTGTTCAGCAGCGT+GGG	-	chr8_2:3357534-3357553	Msa1227940:CDS	50.0%
!!	GGGGTGCCATTATCAAAGCA+AGG	-	chr8_2:3357555-3357574	Msa1227940:CDS	50.0%
	CCAGTGACCAATACGGTGAC+CGG	+	chr8_2:3356011-3356030	None:intergenic	55.0%
!!	GTATTGGTCACTGGTGCTGC+AGG	-	chr8_2:3356017-3356036	Msa1227940:three_prime_UTR	55.0%
!	GGCTCAAGCTTCAGCTTTGG+AGG	-	chr8_2:3356789-3356808	Msa1227940:CDS	55.0%
	ACGGTTGCATGGTTGACGTC+TGG	+	chr8_2:3357296-3357315	None:intergenic	55.0%
	AGACGTCAACCATGCAACCG+TGG	-	chr8_2:3357295-3357314	Msa1227940:intron	55.0%
	CACAACTGTTCAGCAGCGTG+GGG	-	chr8_2:3357535-3357554	Msa1227940:CDS	55.0%
	ACAACTGTTCAGCAGCGTGG+GGG	-	chr8_2:3357536-3357555	Msa1227940:CDS	55.0%
	CCAGTGACCAATACGGTGAC+CGG	+	chr8_2:3356011-3356030	None:intergenic	55.0%
!!	GTATTGGTCACTGGTGCTGC+AGG	-	chr8_2:3356017-3356036	Msa1227940:three_prime_UTR	55.0%
!	GGCTCAAGCTTCAGCTTTGG+AGG	-	chr8_2:3356789-3356808	Msa1227940:CDS	55.0%
	ACGGTTGCATGGTTGACGTC+TGG	+	chr8_2:3357296-3357315	None:intergenic	55.0%
	AGACGTCAACCATGCAACCG+TGG	-	chr8_2:3357295-3357314	Msa1227940:intron	55.0%
	CACAACTGTTCAGCAGCGTG+GGG	-	chr8_2:3357535-3357554	Msa1227940:CDS	55.0%
	ACAACTGTTCAGCAGCGTGG+GGG	-	chr8_2:3357536-3357555	Msa1227940:CDS	55.0%
!	CCGGTCACCGTATTGGTCAC+TGG	-	chr8_2:3356008-3356027	Msa1227940:three_prime_UTR	60.0%
!!	GGTTGGTGGATTCCCACGGA+AGG	-	chr8_2:3356717-3356736	Msa1227940:CDS	60.0%
!	GGTGGATTCCCACGGAAGGA+AGG	-	chr8_2:3356721-3356740	Msa1227940:CDS	60.0%
!	CCGGTCACCGTATTGGTCAC+TGG	-	chr8_2:3356008-3356027	Msa1227940:three_prime_UTR	60.0%
!!	GGTTGGTGGATTCCCACGGA+AGG	-	chr8_2:3356717-3356736	Msa1227940:CDS	60.0%
!	GGTGGATTCCCACGGAAGGA+AGG	-	chr8_2:3356721-3356740	Msa1227940:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	3355978	3358386	3355978	ID=Msa1227940;Name=Msa1227940
chr8_2	mRNA	3355978	3358386	3355978	ID=Msa1227940-mRNA-1;Parent=Msa1227940;Name=Msa1227940-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.83\|0.71\|1\|1\|1\|7\|336\|337
chr8_2	exon	3355978	3356405	3355978	ID=Msa1227940-mRNA-1:exon:1061;Parent=Msa1227940-mRNA-1
chr8_2	exon	3356518	3356629	3356518	ID=Msa1227940-mRNA-1:exon:1060;Parent=Msa1227940-mRNA-1
chr8_2	exon	3356712	3356847	3356712	ID=Msa1227940-mRNA-1:exon:1059;Parent=Msa1227940-mRNA-1
chr8_2	exon	3356995	3357272	3356995	ID=Msa1227940-mRNA-1:exon:1058;Parent=Msa1227940-mRNA-1
chr8_2	exon	3357530	3357705	3357530	ID=Msa1227940-mRNA-1:exon:1057;Parent=Msa1227940-mRNA-1
chr8_2	exon	3357820	3357978	3357820	ID=Msa1227940-mRNA-1:exon:1056;Parent=Msa1227940-mRNA-1
chr8_2	exon	3358326	3358386	3358326	ID=Msa1227940-mRNA-1:exon:1055;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3358326	3358386	3358326	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3357820	3357978	3357820	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3357530	3357705	3357530	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3356995	3357272	3356995	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3356712	3356847	3356712	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3356518	3356629	3356518	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	CDS	3356314	3356405	3356314	ID=Msa1227940-mRNA-1:cds;Parent=Msa1227940-mRNA-1
chr8_2	three_prime_UTR	3355978	3356313	3355978	ID=Msa1227940-mRNA-1:three_prime_utr;Parent=Msa1227940-mRNA-1

Gene Sequence

>Msa1227940

ATGAGTGATCTTCTCAAAGTTGAGAAAGAACCGGTCACCGTATTGGTCACTGGTGCTGCAGGACAAATTGGTTATGCACTTGTTCCAATGATAGCAAGAGGGATGATGTTAGGCCCAAATCAACCTGTAATTTTGCATATGCTTGATATTGAACCAGCATTAGAGGCACTTAAAGGGGTGAAGATGGAGCTAATTGATGCTGCTTTCCCACTTCTTAGAGGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGCAAGGATGTTAACATTGCTGTTATGGTTGGTGGATTCCCACGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAGAATGTTTCAATTTACAAGGCTCAAGCTTCAGCTTTGGAGGAGCATGCTGCTGCAGATTGTAAAGTGCTAGTGATCGCCAATCCAGCAAATACAAATGCTCTAATATTGAAAGAATTTGCTCCATCAATCCCTGATAAAAATATAACATGTCTAACTAGACTTGATCATAATAGAGCATTAGGCCAAATCTCTGAGAAGCTAAATGTTCATGTTAGTGATGTGAAAAATGTTATCATTTGGGGAAATCACTCCTCAACTCAATATCCAGACGTCAACCATGCAACCGTGGCAACAAGAAATGGCCAGAAGCATGTCAGAGAATTAGTTGCTGATGATAATTGGCTAAACAGTGAGTTCATCACAACTGTTCAGCAGCGTGGGGGTGCCATTATCAAAGCAAGGAAGCTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGCGATCATATTCGTGATTGGGTTCTAGGTACACCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTATCCAACCTGGTCTCATTTACTCTTTTCCTGTTACATGTGACAAAGGAGAATGGAACATTGTACAAGGGCTCAAGATTGATGAATTCTCAAGGGAAAAGATGGATAAAACAGCTCAAGAGCTCATTGAGGAGAAAACATTGGCTAACTCGTGCCTTTAA

Protein sequence

>Msa1227940

MSDLLKVEKEPVTVLVTGAAGQIGYALVPMIARGMMLGPNQPVILHMLDIEPALEALKGVKMELIDAAFPLLRGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEEHAAADCKVLVIANPANTNALILKEFAPSIPDKNITCLTRLDHNRALGQISEKLNVHVSDVKNVIIWGNHSSTQYPDVNHATVATRNGQKHVRELVADDNWLNSEFITTVQQRGGAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCDKGEWNIVQGLKIDEFSREKMDKTAQELIEEKTLANSCL*