AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382550 MtrunA17_Chr3g0137821 97.818 825 15 1 1 825 1 822 0.0 1686
Msa0382550 MtrunA17_Chr3g0137791 70.286 838 224 12 1 825 1 826 0.0 1198
Msa0382550 MtrunA17_Chr4g0003411 64.388 834 262 12 1 825 1 808 0.0 1085
Msa0382550 MtrunA17_Chr2g0333021 63.057 831 272 11 4 825 5 809 0.0 1040
Msa0382550 MtrunA17_Chr5g0398161 44.807 828 420 16 4 814 37 844 0.0 686
Msa0382550 MtrunA17_Chr7g0246481 44.699 830 417 18 4 814 298 1104 0.0 685
Msa0382550 MtrunA17_Chr8g0380631 44.983 867 405 23 2 825 12 849 0.0 680
Msa0382550 MtrunA17_Chr3g0143471 44.091 880 407 24 5 825 13 866 0.0 680
Msa0382550 MtrunA17_Chr5g0398171 43.943 842 401 19 4 814 37 838 0.0 674
Msa0382550 MtrunA17_Chr8g0350951 43.593 835 424 17 4 814 228 1039 0.0 668
Msa0382550 MtrunA17_Chr5g0406161 42.207 879 428 18 5 825 16 872 0.0 665
Msa0382550 MtrunA17_Chr2g0330431 43.534 781 379 18 53 825 30 756 0.0 622
Msa0382550 MtrunA17_Chr8g0341931 41.396 831 398 21 2 825 5 753 0.0 588
Msa0382550 MtrunA17_Chr1g0192401 32.500 240 123 10 510 740 733 942 2.60e-21 100
Msa0382550 MtrunA17_Chr1g0192401 30.544 239 123 10 211 435 350 559 1.40e-19 94.4
Msa0382550 MtrunA17_Chr2g0295411 33.333 201 102 5 510 705 783 956 2.75e-18 90.5
Msa0382550 MtrunA17_Chr2g0295411 30.453 243 119 11 211 435 376 586 4.84e-18 89.7
Msa0382550 MtrunA17_Chr5g0406151 51.351 74 30 2 326 399 12 79 6.57e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382550 AT3G15730.1 62.560 828 284 12 3 825 4 810 0.0 1060
Msa0382550 AT1G52570.1 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0382550 AT1G52570.3 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0382550 AT1G52570.2 62.031 827 288 12 4 825 5 810 0.0 1040
Msa0382550 AT5G25370.1 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0382550 AT5G25370.3 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0382550 AT5G25370.2 60.555 829 306 14 4 825 6 820 0.0 1003
Msa0382550 AT5G25370.4 62.850 751 263 12 81 825 5 745 0.0 954
Msa0382550 AT2G42010.1 44.391 829 418 17 4 814 270 1073 0.0 687
Msa0382550 AT4G11830.2 44.153 838 423 20 1 814 30 846 0.0 685
Msa0382550 AT4G11830.1 45.817 777 383 16 59 814 55 814 0.0 684
Msa0382550 AT2G42010.2 43.361 851 420 17 4 814 270 1098 0.0 680
Msa0382550 AT4G11840.1 43.705 842 417 20 3 814 42 856 0.0 673
Msa0382550 AT4G00240.1 44.058 833 415 19 4 814 114 917 0.0 671
Msa0382550 AT4G11850.1 44.019 836 419 19 3 814 38 848 0.0 668
Msa0382550 AT4G35790.2 43.886 875 410 19 4 825 11 857 0.0 668
Msa0382550 AT4G00240.3 45.349 774 386 15 59 814 11 765 0.0 667
Msa0382550 AT4G00240.2 45.349 774 386 15 59 814 128 882 0.0 666
Msa0382550 AT4G35790.1 43.567 886 408 20 4 825 11 868 0.0 661
Msa0382550 AT4G11840.2 43.214 840 394 19 3 814 42 826 0.0 655
Msa0382550 AT1G55180.2 41.000 800 397 23 39 825 3 740 0.0 582
Msa0382550 AT1G55180.1 41.184 794 392 23 45 825 31 762 0.0 581
Msa0382550 AT4G35790.3 42.857 693 323 15 4 643 11 683 1.80e-168 504
Msa0382550 AT4G11830.4 42.697 623 325 15 1 609 30 634 1.79e-160 481
Msa0382550 AT4G11830.3 42.904 606 314 15 1 592 30 617 2.15e-156 471
Msa0382550 AT3G05630.1 34.413 247 125 9 512 750 714 931 2.16e-24 110
Msa0382550 AT3G05630.1 32.218 239 119 10 211 435 363 572 2.78e-19 94.0
Msa0382550 AT3G16785.6 33.182 220 101 9 231 435 389 577 6.14e-20 95.9
Msa0382550 AT3G16785.6 36.453 203 95 7 509 705 756 930 9.27e-20 95.5
Msa0382550 AT3G16785.5 33.182 220 101 9 231 435 389 577 6.14e-20 95.9
Msa0382550 AT3G16785.5 36.453 203 95 7 509 705 756 930 9.27e-20 95.5
Msa0382550 AT3G16785.4 33.182 220 101 9 231 435 389 577 6.19e-20 96.3
Msa0382550 AT3G16785.4 36.453 203 95 7 509 705 756 930 1.06e-19 95.5
Msa0382550 AT3G16785.1 33.182 220 101 9 231 435 389 577 6.72e-20 95.9
Msa0382550 AT3G16785.1 36.453 203 95 7 509 705 756 930 9.54e-20 95.5
Msa0382550 AT3G16785.3 33.182 220 101 9 231 435 389 577 7.13e-20 95.9
Msa0382550 AT3G16785.3 36.453 203 95 7 509 705 756 930 9.79e-20 95.5
Msa0382550 AT3G16785.2 33.182 220 101 9 231 435 389 577 7.13e-20 95.9
Msa0382550 AT3G16785.2 36.453 203 95 7 509 705 756 930 9.79e-20 95.5

Find 203 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGTCTCATTCCATTTC+GGG 0.167631 3_1:+85181294 None:intergenic
CTACTTTCTGTTGGCTTGTT+TGG 0.177927 3_1:+85180780 None:intergenic
GATACAATGGCTTTGATTCT+TGG 0.200605 3_1:-85178762 Msa0382550:CDS
TTTACGCATTCCACACTTTC+AGG 0.207301 3_1:+85178933 None:intergenic
ATAGAAGCACCTGGGAAATT+TGG 0.213465 3_1:+85180351 None:intergenic
CCAAATGAAGTTATTGAATT+AGG 0.215359 3_1:-85180060 Msa0382550:CDS
TTCCACCATCCATTGATCTT+TGG 0.219999 3_1:+85179105 None:intergenic
GTTGCAAGCTGGATGTAATT+TGG 0.224934 3_1:-85181880 Msa0382550:CDS
CTAGGACTAGGTGGTAAGTA+TGG 0.233733 3_1:+85178716 None:intergenic
CAACCTATCAACTTCACTTA+TGG 0.246044 3_1:+85181899 None:intergenic
TACTTTCTGTTGGCTTGTTT+GGG 0.247108 3_1:+85180781 None:intergenic
GGAAGTGTGACATCACTTTC+AGG 0.249099 3_1:-85178801 Msa0382550:CDS
TAAAATACTCTGCAGTTTCT+TGG 0.255279 3_1:+85180634 None:intergenic
TCAAAGGTCTCATTCCATTT+CGG 0.277608 3_1:+85181293 None:intergenic
GGGTTGATTCCCTATCATTC+TGG 0.280304 3_1:+85181322 None:intergenic
TTAATGTTCTTGTGCTTGTT+TGG 0.292615 3_1:-85180713 Msa0382550:CDS
ACAAACGGGAACTATTTCTT+TGG 0.299627 3_1:+85182067 None:intergenic
TCAACCCATCTGTCAATTAT+AGG 0.308791 3_1:+85181155 None:intergenic
AAAGTCTTTATTTACATAAC+TGG 0.310682 3_1:-85180840 Msa0382550:CDS
ATACAGAAATAACCTTGATT+AGG 0.319930 3_1:-85180806 Msa0382550:CDS
ATTCTATCAAGCTCTTGAAT+TGG 0.328163 3_1:+85180192 None:intergenic
CATCAACAACTATAGTCTTT+TGG 0.330540 3_1:+85180514 None:intergenic
AAGAACATTAACACCTTCAT+TGG 0.337331 3_1:+85180725 None:intergenic
CCTAATTCAATAACTTCATT+TGG 0.339645 3_1:+85180060 None:intergenic
TACAGAAATAACCTTGATTA+GGG 0.344363 3_1:-85180805 Msa0382550:CDS
CTCATTCCATTTCGGGTTTG+AGG 0.344995 3_1:+85181301 None:intergenic
AGAATCAAAGCCATTGTATC+AGG 0.349603 3_1:+85178765 None:intergenic
CTTCAACAGGATACCGTAAA+AGG 0.350159 3_1:+85178835 None:intergenic
CGAACAGTTATCAGTTTCAT+AGG 0.359772 3_1:-85180465 Msa0382550:CDS
GATATTAAAGTTGAGGATAT+TGG 0.365230 3_1:-85179901 Msa0382550:CDS
CATCCATGGATACCAATATC+TGG 0.368621 3_1:-85180924 Msa0382550:CDS
TTCTATCAAGCTCTTGAATT+GGG 0.378843 3_1:+85180193 None:intergenic
CCAATTGGTGCAACTCTAAT+CGG 0.382314 3_1:-85181215 Msa0382550:CDS
AGACCACAAGGTCAAGTATA+TGG 0.383000 3_1:-85179014 Msa0382550:CDS
GTTGGACGAACCAGAATGAT+AGG 0.386126 3_1:-85181332 Msa0382550:CDS
CATCTTACCTATCATCATCT+TGG 0.386141 3_1:+85179519 None:intergenic
ACCTGAGAGTGCATCAGTTC+AGG 0.390624 3_1:-85179770 Msa0382550:CDS
CATGATTTCATCAAAGTGTA+AGG 0.391165 3_1:+85178597 None:intergenic
CTGTCAGGCTCTGGTTGCTC+TGG 0.392079 3_1:+85179592 None:intergenic
CCATCTTCACCCACTTCAAC+AGG 0.395226 3_1:+85178822 None:intergenic
CCGATTAGAGTTGCACCAAT+TGG 0.395417 3_1:+85181215 None:intergenic
TAATGTTCTTGTGCTTGTTT+GGG 0.399896 3_1:-85180712 Msa0382550:CDS
ATATCTTCCCAACATCTTCC+AGG 0.400559 3_1:+85180885 None:intergenic
ATTGAAAATCAGTATTTCCT+AGG 0.407400 3_1:-85179949 Msa0382550:CDS
CAGTTCAGGCAATATTAGAT+TGG 0.408091 3_1:-85179756 Msa0382550:CDS
ACCGTGTTGCTGAGAGGAAT+TGG 0.410354 3_1:-85178902 Msa0382550:CDS
ATCAACCCTCAAACCCGAAA+TGG 0.413276 3_1:-85181307 Msa0382550:CDS
CAGAAGAAGATGGCGAAACT+TGG 0.417133 3_1:-85180140 Msa0382550:CDS
CAAAAGACTATAGTTGTTGA+TGG 0.423538 3_1:-85180513 Msa0382550:CDS
CTTGTTTGGGTCCCTAATCA+AGG 0.426022 3_1:+85180794 None:intergenic
GCATTATGGTATGAACATAT+TGG 0.427241 3_1:-85178981 Msa0382550:CDS
CAAGCTCTTGAATTGGGAAC+AGG 0.427300 3_1:+85180199 None:intergenic
AAAGACTTTAGCATTCATAA+TGG 0.428519 3_1:+85180854 None:intergenic
GGAAATAATGGCTGAACAAA+CGG 0.432945 3_1:+85182052 None:intergenic
ATGGCTTCAGGAGAGCATTA+TGG 0.435411 3_1:-85178995 Msa0382550:CDS
GATATTCACTGCAAGCTAGA+AGG 0.435535 3_1:-85180297 Msa0382550:CDS
GTCAAAGATGATAATCCAAT+TGG 0.435782 3_1:-85181230 Msa0382550:CDS
TCATTCCATTTCGGGTTTGA+GGG 0.436659 3_1:+85181302 None:intergenic
GTTCATTCCAAGATGATGAT+AGG 0.436783 3_1:-85179526 Msa0382550:intron
TAACCATAAGTGAAGTTGAT+AGG 0.438118 3_1:-85181902 Msa0382550:CDS
ATCTTCAATGACAACTCCTT+TGG 0.440344 3_1:+85179862 None:intergenic
ATCCATGGATGAACACTGTC+AGG 0.442733 3_1:+85180936 None:intergenic
GAATTGGGAACAGGAATTGT+TGG 0.442982 3_1:+85180208 None:intergenic
CATTGATCTTTGGTTTATGT+TGG 0.443067 3_1:+85179115 None:intergenic
TCCTAGGGAGTTCCTATGGT+TGG 0.446572 3_1:-85179933 Msa0382550:CDS
GCTGCTACATGGGACACTTA+AGG 0.452370 3_1:-85181925 Msa0382550:CDS
ACAAGATACAACCCTTGACT+TGG 0.452543 3_1:+85181515 None:intergenic
TTTCTTGAGTATTTCTCCTA+GGG 0.452951 3_1:+85180752 None:intergenic
GCACTCTCAGGTATACCTTC+TGG 0.455321 3_1:+85179781 None:intergenic
TTGTGGTCTTTGTGAGCCAT+TGG 0.456429 3_1:+85179028 None:intergenic
CCAGGTGCTTCTATTAAGAA+AGG 0.457313 3_1:-85180342 Msa0382550:CDS
ATTGTTAGCAAAATTGAAGC+TGG 0.460007 3_1:-85179841 Msa0382550:CDS
GGACGACAGAACCTCTGTTC+CGG 0.460427 3_1:-85180691 Msa0382550:CDS
AAGGTCAAGTATATGGCTTC+AGG 0.460768 3_1:-85179007 Msa0382550:CDS
CAGTTGTTTAGATCCATTGA+TGG 0.464754 3_1:-85180111 Msa0382550:CDS
GTTCCAGATATTGGTATCCA+TGG 0.465135 3_1:+85180921 None:intergenic
TAACTTCATTTGGTGCTTGA+GGG 0.468911 3_1:+85180070 None:intergenic
AAAATGCCTCAGCTGCTACA+TGG 0.472016 3_1:-85181936 Msa0382550:CDS
ATAACTTCATTTGGTGCTTG+AGG 0.473405 3_1:+85180069 None:intergenic
GAAATAATGGCTGAACAAAC+GGG 0.474517 3_1:+85182053 None:intergenic
AGAAACAGCACCACCATCAA+TGG 0.474765 3_1:+85180098 None:intergenic
CCTGTTGAAGTGGGTGAAGA+TGG 0.476067 3_1:-85178822 Msa0382550:CDS
AAAAGGGAGAGTAAGAAAGA+TGG 0.477240 3_1:-85179628 Msa0382550:CDS
GCCTGAACTGATGCACTCTC+AGG 0.477938 3_1:+85179769 None:intergenic
TATTTCCTAGGGAGTTCCTA+TGG 0.478923 3_1:-85179937 Msa0382550:CDS
TTTGCGATCCTTCAACATGA+TGG 0.480827 3_1:+85180490 None:intergenic
TGATAATCACTGTCAGGCTC+TGG 0.481330 3_1:+85179583 None:intergenic
TCTTTGTGAGCCATTGGATG+TGG 0.483037 3_1:+85179034 None:intergenic
ATTGAATTAGGCCTTGTTAG+TGG 0.484468 3_1:-85180048 Msa0382550:CDS
GTTGATGAAAATCATCATGA+TGG 0.485239 3_1:+85180373 None:intergenic
GATATAGATCATAGCATAGC+AGG 0.485628 3_1:-85181985 Msa0382550:five_prime_UTR
GAAGATCATCGTCCTGTACC+AGG 0.485983 3_1:-85181119 Msa0382550:CDS
GATTTAGATAAAGCAAGGGT+TGG 0.486390 3_1:-85181350 Msa0382550:CDS
CAATATTAGATTGGCAAAGA+AGG 0.486949 3_1:-85179747 Msa0382550:CDS
TCTTTATTTACATAACTGGT+TGG 0.487503 3_1:-85180836 Msa0382550:CDS
TCAGGCTCTGGTTGCTCTGG+AGG 0.487804 3_1:+85179595 None:intergenic
CACTTGTGATGAAGATTGTT+GGG 0.493040 3_1:-85181394 Msa0382550:intron
TACAACACATCCCATGCAAT+AGG 0.493852 3_1:+85180273 None:intergenic
AGAGGTGGGAAAAGCAAGTC+GGG 0.494783 3_1:-85180239 Msa0382550:CDS
AGGGTGATACTACTTTCTGT+TGG 0.495579 3_1:+85180771 None:intergenic
CCACTTGTGATGAAGATTGT+TGG 0.497598 3_1:-85181395 Msa0382550:intron
TCTATGATAACAACCTGTCT+TGG 0.498938 3_1:+85178670 None:intergenic
TTATGTACCTGGAAGATGTT+GGG 0.499994 3_1:-85180892 Msa0382550:CDS
TCTTCGTATAGCATTTATGT+AGG 0.504718 3_1:+85179990 None:intergenic
GCTCTATGATAATCACTGTC+AGG 0.504896 3_1:+85179577 None:intergenic
ATATCATGCCACGGTTCTCT+AGG 0.506247 3_1:+85180315 None:intergenic
AGGTGGTAAGTATGGGAGGA+AGG 0.511866 3_1:+85178724 None:intergenic
CCTTTCTTAATAGAAGCACC+TGG 0.512394 3_1:+85180342 None:intergenic
TTTACGGTATCCTGTTGAAG+TGG 0.514342 3_1:-85178832 Msa0382550:CDS
AAACCGTCTTTCTTAAAAGC+CGG 0.515049 3_1:+85180672 None:intergenic
TTCAACTGATATTAAAGTTG+AGG 0.520279 3_1:-85179908 Msa0382550:CDS
TTGAAAATCAGTATTTCCTA+GGG 0.521701 3_1:-85179948 Msa0382550:CDS
TAATTTGGATTTCTGTCGAA+AGG 0.523952 3_1:-85181865 Msa0382550:intron
AAATGCCTCAGCTGCTACAT+GGG 0.524555 3_1:-85181935 Msa0382550:CDS
AGAGAGGTTTGTTGTGTATG+TGG 0.525642 3_1:-85179818 Msa0382550:CDS
CAGTGCTTGACGGCCAAGAC+AGG 0.526347 3_1:-85178683 Msa0382550:three_prime_UTR
AAGCACTGTGCTAGCTAGCT+AGG 0.526978 3_1:+85178698 None:intergenic
GGGGTCGGGAGAGGAAATAA+TGG 0.528859 3_1:+85182040 None:intergenic
CAACATAAACCAAAGATCAA+TGG 0.528894 3_1:-85179114 Msa0382550:CDS
TTTAAGAAAGACGGTTTGAT+GGG 0.532749 3_1:-85180666 Msa0382550:CDS
TTGAGGATAGAAAATGTCTA+TGG 0.533093 3_1:-85181055 Msa0382550:CDS
CTAGCTAGCACAGTGCTTGA+CGG 0.534749 3_1:-85178693 Msa0382550:three_prime_UTR
TGATGAAATCATGTGGTACA+AGG 0.537673 3_1:-85178587 Msa0382550:three_prime_UTR
AGAAAATGTCTATGGTCTCA+AGG 0.538595 3_1:-85181047 Msa0382550:CDS
TCTGATAACATTGCATCAGA+AGG 0.542244 3_1:+85180159 None:intergenic
AGCTAGAAGGACCTATTGCA+TGG 0.543044 3_1:-85180284 Msa0382550:CDS
TTTCATCAACCAAATTTCCC+AGG 0.543862 3_1:-85180360 Msa0382550:CDS
GGTATACCTTCTGGCCACAT+TGG 0.545537 3_1:+85179790 None:intergenic
AAGGACCTATAATTGACAGA+TGG 0.549514 3_1:-85181160 Msa0382550:CDS
TCAAGGGTTGTATCTTGTGC+CGG 0.551228 3_1:-85181510 Msa0382550:CDS
GAAGTGTGACATCACTTTCA+GGG 0.551309 3_1:-85178800 Msa0382550:CDS
TTCGATCAGAGACAAGGTTG+TGG 0.553785 3_1:-85180987 Msa0382550:CDS
GTTGATGGCCATCATGTTGA+AGG 0.554676 3_1:-85180498 Msa0382550:CDS
GACTAGGTGGTAAGTATGGG+AGG 0.555923 3_1:+85178720 None:intergenic
TTGTATCTTGTGCCGGCCTG+AGG 0.558222 3_1:-85181503 Msa0382550:intron
AGAGACACAGAGATTGCAAT+GGG 0.562687 3_1:-85179083 Msa0382550:CDS
ATAACATTGCATCAGAAGGA+TGG 0.563136 3_1:+85180163 None:intergenic
CAGTTGATTTAGATAAAGCA+AGG 0.564307 3_1:-85181355 Msa0382550:CDS
ATTATGTACCTGGAAGATGT+TGG 0.564788 3_1:-85180893 Msa0382550:CDS
AGGACCTATAATTGACAGAT+GGG 0.565090 3_1:-85181159 Msa0382550:CDS
GATGATGAATACATAGTGAT+TGG 0.566916 3_1:-85179143 Msa0382550:CDS
TTACGGTATCCTGTTGAAGT+GGG 0.569394 3_1:-85178831 Msa0382550:CDS
TGTGCTAGCTAGCTAGGACT+AGG 0.570468 3_1:+85178704 None:intergenic
GCAATTCTCTAGTGTCATTG+AGG 0.571602 3_1:-85181072 Msa0382550:CDS
GGAACAAAATATTATGTACC+TGG 0.572833 3_1:-85180903 Msa0382550:CDS
TCCCTGACAGTGTTCATCCA+TGG 0.573348 3_1:-85180938 Msa0382550:CDS
CAAAATGTAGGGGTCGGGAG+AGG 0.575553 3_1:+85182031 None:intergenic
GAGATTTCTAGCCCAAGTCA+AGG 0.578002 3_1:-85181527 Msa0382550:CDS
TAGGACTAGGTGGTAAGTAT+GGG 0.578728 3_1:+85178717 None:intergenic
GCAAAATTGAAGCTGGAGAG+AGG 0.581821 3_1:-85179834 Msa0382550:CDS
CTCAGTATACATCATCTCCA+TGG 0.584166 3_1:+85179723 None:intergenic
TGTCAGGGACATGAGCGTCT+TGG 0.584673 3_1:+85180952 None:intergenic
CAAGATACAACCCTTGACTT+GGG 0.589678 3_1:+85181516 None:intergenic
CATCTAGCATCCACATCCAA+TGG 0.592837 3_1:-85179044 Msa0382550:CDS
TTATGTCCGCGTAACCCTGA+TGG 0.596322 3_1:-85180588 Msa0382550:CDS
GCCAACCATAGGAACTCCCT+AGG 0.597582 3_1:+85179932 None:intergenic
TCCAATTCCTCTCAGCAACA+CGG 0.598333 3_1:+85178901 None:intergenic
GAAGTTGATAGGTTGCAAGC+TGG 0.598778 3_1:-85181891 Msa0382550:CDS
ATGAGCACAATAGATTTCAA+AGG 0.601968 3_1:+85181277 None:intergenic
TGCATTGCATCTCATACCAA+AGG 0.606137 3_1:-85179878 Msa0382550:CDS
AGATTTCTAGCCCAAGTCAA+GGG 0.608267 3_1:-85181526 Msa0382550:CDS
ATATAGATCATAGCATAGCA+GGG 0.609293 3_1:-85181984 Msa0382550:five_prime_UTR
TTGTTTAGATCCATTGATGG+TGG 0.610089 3_1:-85180108 Msa0382550:CDS
ATCAGTTGAATGCCAACCAT+AGG 0.610416 3_1:+85179921 None:intergenic
TTAAATTGTGTACCTCAGGC+CGG 0.610436 3_1:+85181491 None:intergenic
AACCAAAGATCAATGGATGG+TGG 0.611885 3_1:-85179107 Msa0382550:CDS
CAGAGGTGGGAAAAGCAAGT+CGG 0.616576 3_1:-85180240 Msa0382550:CDS
TTTCCACCATCAGGGTTACG+CGG 0.618021 3_1:+85180582 None:intergenic
AGTTGATTTAGATAAAGCAA+GGG 0.621560 3_1:-85181354 Msa0382550:CDS
TACACTTTGATGAAATCATG+TGG 0.621582 3_1:-85178594 Msa0382550:three_prime_UTR
TTGGACGAACCAGAATGATA+GGG 0.623042 3_1:-85181331 Msa0382550:CDS
ACAGAAAGTAGTATCACCCT+AGG 0.623457 3_1:-85180768 Msa0382550:CDS
AGTGTCCCATGTAGCAGCTG+AGG 0.627470 3_1:+85181930 None:intergenic
GGTGGTATTGATCTGTGTGA+TGG 0.628015 3_1:-85180444 Msa0382550:CDS
TAAAGGGAACAACACACAAG+GGG 0.628918 3_1:-85181552 Msa0382550:intron
GTGTTCAAAGTTGAAAACAA+AGG 0.629611 3_1:+85180399 None:intergenic
GCTAGAAGGACCTATTGCAT+GGG 0.631026 3_1:-85180283 Msa0382550:CDS
TGTCCGCGTAACCCTGATGG+TGG 0.631372 3_1:-85180585 Msa0382550:CDS
ACAGTTATCAGTTTCATAGG+TGG 0.633175 3_1:-85180462 Msa0382550:CDS
ATAAACCAAAGATCAATGGA+TGG 0.633380 3_1:-85179110 Msa0382550:CDS
CCTTCCGAGAAAATTCTCAA+AGG 0.639521 3_1:-85181179 Msa0382550:CDS
AAGCCATATACTTGACCTTG+TGG 0.641516 3_1:+85179011 None:intergenic
TTTCTTAAAAGCCGGAACAG+AGG 0.644428 3_1:+85180680 None:intergenic
CTTTCTTAATAGAAGCACCT+GGG 0.646815 3_1:+85180343 None:intergenic
GGTGCTTCTATTAAGAAAGG+TGG 0.653659 3_1:-85180339 Msa0382550:CDS
GTGATTCCAATGTGGCCAGA+AGG 0.653982 3_1:-85179796 Msa0382550:CDS
GCAATGTTATCAGAAGAAGA+TGG 0.655613 3_1:-85180150 Msa0382550:CDS
ATAGTGTATGAACGAGCAAG+TGG 0.657900 3_1:+85178546 None:intergenic
AAGAGACACAGAGATTGCAA+TGG 0.659014 3_1:-85179084 Msa0382550:CDS
TTGCAGTGAATATCATGCCA+CGG 0.660624 3_1:+85180306 None:intergenic
AATAAAGGGAACAACACACA+AGG 0.665452 3_1:-85181554 Msa0382550:intron
AGATTGGCAAAGAAGGACCA+TGG 0.665799 3_1:-85179740 Msa0382550:CDS
GCTAGCTAGCTAGGACTAGG+TGG 0.669608 3_1:+85178707 None:intergenic
TGATGGAAGATATGATACAA+TGG 0.676865 3_1:-85180427 Msa0382550:CDS
GATGTGGATGCTAGATGATG+AGG 0.676901 3_1:+85179050 None:intergenic
TAAAATGTCAAATAATCACG+AGG 0.677762 3_1:+85179661 None:intergenic
AAAATGTCAAATAATCACGA+GGG 0.681608 3_1:+85179662 None:intergenic
TCCATGGATGAACACTGTCA+GGG 0.688183 3_1:+85180937 None:intergenic
ATAAAGGGAACAACACACAA+GGG 0.688691 3_1:-85181553 Msa0382550:intron
AATGGCTCACAAAGACCACA+AGG 0.712737 3_1:-85179026 Msa0382550:CDS
TGTATGTGGTGATTCCAATG+TGG 0.713699 3_1:-85179804 Msa0382550:CDS
GATCATCGTCCTGTACCAGG+CGG 0.755483 3_1:-85181116 Msa0382550:CDS
AAGGTGGTCCTAGAGAACCG+TGG 0.794041 3_1:-85180323 Msa0382550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTTACAAAATGTA+GGG + chr3_1:85178552-85178571 None:intergenic 15.0%
!!! TTCAATTTTTTACAAAATGT+AGG + chr3_1:85178553-85178572 None:intergenic 15.0%
!! TTGAAGTTTAAATTCATAAA+TGG - chr3_1:85178789-85178808 Msa0382550:CDS 15.0%
!! CATATAAGCTATTATATTAT+AGG + chr3_1:85181085-85181104 None:intergenic 15.0%
!! AAAAGATTTATTTGAATGTT+TGG + chr3_1:85181122-85181141 None:intergenic 15.0%
!!! ACATTCAAATAAATCTTTTT+AGG - chr3_1:85181123-85181142 Msa0382550:CDS 15.0%
!! AAACCTAGAAAATATATATT+TGG - chr3_1:85181317-85181336 Msa0382550:CDS 15.0%
!!! CAATTTTTTACAAAATGTAG+GGG + chr3_1:85178551-85178570 None:intergenic 20.0%
!! CACTTTAATTATTAAAACAC+TGG + chr3_1:85178750-85178769 None:intergenic 20.0%
!! AAATGGCAAAATATATTATG+CGG - chr3_1:85178806-85178825 Msa0382550:CDS 20.0%
!! AATTTGTGTATTCAATGAAT+TGG - chr3_1:85178897-85178916 Msa0382550:CDS 20.0%
!!! TAATATTTTGTTCCAGATAT+TGG + chr3_1:85179660-85179679 None:intergenic 20.0%
!!! AAAGTCTTTATTTACATAAC+TGG - chr3_1:85179729-85179748 Msa0382550:CDS 20.0%
!!! AGAGTATTTTAAAAACACAA+AGG - chr3_1:85179947-85179966 Msa0382550:CDS 20.0%
!!! TTCAACATTCTTCTTTTTTA+TGG + chr3_1:85180882-85180901 None:intergenic 20.0%
!!! TATTTGACATTTTATTGTCT+TGG - chr3_1:85180917-85180936 Msa0382550:CDS 20.0%
!!! ATTTTATTGTCTTGGTAAAA+GGG - chr3_1:85180925-85180944 Msa0382550:CDS 20.0%
!!! TTCAAATAAATCTTTTTAGG+TGG - chr3_1:85181126-85181145 Msa0382550:CDS 20.0%
!! AATGAAAAATCATGATAGTT+AGG + chr3_1:85181282-85181301 None:intergenic 20.0%
!!! ATTTTCTAGGTTTTGAATAT+AGG + chr3_1:85181310-85181329 None:intergenic 20.0%
!!! ATGCCAAATATATATTTTCT+AGG + chr3_1:85181323-85181342 None:intergenic 20.0%
!! ATAAAGTAAACAATCAATGT+TGG + chr3_1:85181391-85181410 None:intergenic 20.0%
! CAAAATATATTATGCGGTAT+TGG - chr3_1:85178812-85178831 Msa0382550:CDS 25.0%
!! TTTTCTTCTGTCAAATATTG+TGG - chr3_1:85178992-85179011 Msa0382550:CDS 25.0%
! TGTCAAATATTGTGGAATAA+AGG - chr3_1:85179000-85179019 Msa0382550:CDS 25.0%
! GTCAAATATTGTGGAATAAA+GGG - chr3_1:85179001-85179020 Msa0382550:CDS 25.0%
! TATACAAATGGTAGAAAGTT+TGG + chr3_1:85179104-85179123 None:intergenic 25.0%
!! ACATGAAAAGCATATACAAA+TGG + chr3_1:85179116-85179135 None:intergenic 25.0%
!! AGTTGATTTAGATAAAGCAA+GGG - chr3_1:85179215-85179234 Msa0382550:intron 25.0%
! AAAGACTTTAGCATTCATAA+TGG + chr3_1:85179718-85179737 None:intergenic 25.0%
!! TCTTTATTTACATAACTGGT+TGG - chr3_1:85179733-85179752 Msa0382550:CDS 25.0%
! ATACAGAAATAACCTTGATT+AGG - chr3_1:85179763-85179782 Msa0382550:CDS 25.0%
! TACAGAAATAACCTTGATTA+GGG - chr3_1:85179764-85179783 Msa0382550:CDS 25.0%
! CCTAATTCAATAACTTCATT+TGG + chr3_1:85180512-85180531 None:intergenic 25.0%
! CCAAATGAAGTTATTGAATT+AGG - chr3_1:85180509-85180528 Msa0382550:CDS 25.0%
! ATTGAAAATCAGTATTTCCT+AGG - chr3_1:85180620-85180639 Msa0382550:CDS 25.0%
! TTGAAAATCAGTATTTCCTA+GGG - chr3_1:85180621-85180640 Msa0382550:CDS 25.0%
! TTCAACTGATATTAAAGTTG+AGG - chr3_1:85180661-85180680 Msa0382550:CDS 25.0%
! GATATTAAAGTTGAGGATAT+TGG - chr3_1:85180668-85180687 Msa0382550:CDS 25.0%
! AAAATGTCAAATAATCACGA+GGG + chr3_1:85180910-85180929 None:intergenic 25.0%
! TAAAATGTCAAATAATCACG+AGG + chr3_1:85180911-85180930 None:intergenic 25.0%
!! CATTTTATTGTCTTGGTAAA+AGG - chr3_1:85180924-85180943 Msa0382550:CDS 25.0%
!! GTGTTTCATATGGTTTTTAT+TGG - chr3_1:85181165-85181184 Msa0382550:CDS 25.0%
! AAAAATCATGATAGTTAGGT+AGG + chr3_1:85181278-85181297 None:intergenic 25.0%
! AAAAATCTATGAAACAAGTG+AGG + chr3_1:85182051-85182070 None:intergenic 25.0%
! TTTTTACAAAATGTAGGGGT+CGG + chr3_1:85178547-85178566 None:intergenic 30.0%
ATATAGATCATAGCATAGCA+GGG - chr3_1:85178585-85178604 Msa0382550:three_prime_UTR 30.0%
! TAACCATAAGTGAAGTTGAT+AGG - chr3_1:85178667-85178686 Msa0382550:intron 30.0%
TAATTTGGATTTCTGTCGAA+AGG - chr3_1:85178704-85178723 Msa0382550:exon 30.0%
!! AAGTCTTTAAAAAGTGTCAC+AGG + chr3_1:85178857-85178876 None:intergenic 30.0%
! AGCTCATTTAATTTAATCCG+TGG - chr3_1:85178960-85178979 Msa0382550:CDS 30.0%
GAAGAAAAAATATAGTGCCA+CGG + chr3_1:85178980-85178999 None:intergenic 30.0%
! CAGTTGATTTAGATAAAGCA+AGG - chr3_1:85179214-85179233 Msa0382550:intron 30.0%
ATGAGCACAATAGATTTCAA+AGG + chr3_1:85179295-85179314 None:intergenic 30.0%
GTCAAAGATGATAATCCAAT+TGG - chr3_1:85179339-85179358 Msa0382550:intron 30.0%
TTGAGGATAGAAAATGTCTA+TGG - chr3_1:85179514-85179533 Msa0382550:intron 30.0%
GGAACAAAATATTATGTACC+TGG - chr3_1:85179666-85179685 Msa0382550:CDS 30.0%
TTTCTTGAGTATTTCTCCTA+GGG + chr3_1:85179820-85179839 None:intergenic 30.0%
! TTTTCTTGAGTATTTCTCCT+AGG + chr3_1:85179821-85179840 None:intergenic 30.0%
AAGAACATTAACACCTTCAT+TGG + chr3_1:85179847-85179866 None:intergenic 30.0%
TTAATGTTCTTGTGCTTGTT+TGG - chr3_1:85179856-85179875 Msa0382550:CDS 30.0%
TAATGTTCTTGTGCTTGTTT+GGG - chr3_1:85179857-85179876 Msa0382550:CDS 30.0%
!! TTTTAAGAAAGACGGTTTGA+TGG - chr3_1:85179902-85179921 Msa0382550:CDS 30.0%
TTTAAGAAAGACGGTTTGAT+GGG - chr3_1:85179903-85179922 Msa0382550:CDS 30.0%
TAAAATACTCTGCAGTTTCT+TGG + chr3_1:85179938-85179957 None:intergenic 30.0%
! CATCAACAACTATAGTCTTT+TGG + chr3_1:85180058-85180077 None:intergenic 30.0%
CAAAAGACTATAGTTGTTGA+TGG - chr3_1:85180056-85180075 Msa0382550:CDS 30.0%
TGATGGAAGATATGATACAA+TGG - chr3_1:85180142-85180161 Msa0382550:CDS 30.0%
GTGTTCAAAGTTGAAAACAA+AGG + chr3_1:85180173-85180192 None:intergenic 30.0%
! GTTGATGAAAATCATCATGA+TGG + chr3_1:85180199-85180218 None:intergenic 30.0%
TTCTATCAAGCTCTTGAATT+GGG + chr3_1:85180379-85180398 None:intergenic 30.0%
ATTCTATCAAGCTCTTGAAT+TGG + chr3_1:85180380-85180399 None:intergenic 30.0%
TCTTCGTATAGCATTTATGT+AGG + chr3_1:85180582-85180601 None:intergenic 30.0%
ATTGTTAGCAAAATTGAAGC+TGG - chr3_1:85180728-85180747 Msa0382550:CDS 30.0%
CAATATTAGATTGGCAAAGA+AGG - chr3_1:85180822-85180841 Msa0382550:CDS 30.0%
TGAATGTTTGGACTTTGTAA+AGG + chr3_1:85181110-85181129 None:intergenic 30.0%
!!! ATCTTTTTAGGTGGTTTCTA+AGG - chr3_1:85181135-85181154 Msa0382550:CDS 30.0%
GAAACTCTAACAACTATCAA+TGG - chr3_1:85181210-85181229 Msa0382550:CDS 30.0%
ATTTAGTCCAATCTTCTTAC+GGG + chr3_1:85181241-85181260 None:intergenic 30.0%
CATTTAGTCCAATCTTCTTA+CGG + chr3_1:85181242-85181261 None:intergenic 30.0%
!!! ACTTTATTTTGTTCCTGTAG+TGG - chr3_1:85181404-85181423 Msa0382550:intron 30.0%
GATGATGAATACATAGTGAT+TGG - chr3_1:85181426-85181445 Msa0382550:intron 30.0%
! CATTGATCTTTGGTTTATGT+TGG + chr3_1:85181457-85181476 None:intergenic 30.0%
CAACATAAACCAAAGATCAA+TGG - chr3_1:85181455-85181474 Msa0382550:intron 30.0%
ATAAACCAAAGATCAATGGA+TGG - chr3_1:85181459-85181478 Msa0382550:intron 30.0%
GCATTATGGTATGAACATAT+TGG - chr3_1:85181588-85181607 Msa0382550:intron 30.0%
! GTGTAAATACTCACCTTTTA+CGG - chr3_1:85181721-85181740 Msa0382550:intron 30.0%
! GCAATATTTTCCTGATACAA+TGG - chr3_1:85181794-85181813 Msa0382550:intron 30.0%
CATGATTTCATCAAAGTGTA+AGG + chr3_1:85181975-85181994 None:intergenic 30.0%
TACACTTTGATGAAATCATG+TGG - chr3_1:85181975-85181994 Msa0382550:five_prime_UTR 30.0%
GAAATAATGGCTGAACAAAC+GGG + chr3_1:85178519-85178538 None:intergenic 35.0%
GGAAATAATGGCTGAACAAA+CGG + chr3_1:85178520-85178539 None:intergenic 35.0%
! TTTTACAAAATGTAGGGGTC+GGG + chr3_1:85178546-85178565 None:intergenic 35.0%
GATATAGATCATAGCATAGC+AGG - chr3_1:85178584-85178603 Msa0382550:three_prime_UTR 35.0%
CAACCTATCAACTTCACTTA+TGG + chr3_1:85178673-85178692 None:intergenic 35.0%
!! TCTTTAAAAAGTGTCACAGG+AGG + chr3_1:85178854-85178873 None:intergenic 35.0%
AATAAAGGGAACAACACACA+AGG - chr3_1:85179015-85179034 Msa0382550:CDS 35.0%
ATAAAGGGAACAACACACAA+GGG - chr3_1:85179016-85179035 Msa0382550:CDS 35.0%
TTGGTTAAATTGTGTACCTC+AGG + chr3_1:85179085-85179104 None:intergenic 35.0%
CACTTGTGATGAAGATTGTT+GGG - chr3_1:85179175-85179194 Msa0382550:intron 35.0%
GATTTAGATAAAGCAAGGGT+TGG - chr3_1:85179219-85179238 Msa0382550:intron 35.0%
TCAAAGGTCTCATTCCATTT+CGG + chr3_1:85179279-85179298 None:intergenic 35.0%
!! CTTTGAGAATTTTCTCGGAA+GGG + chr3_1:85179392-85179411 None:intergenic 35.0%
!! AGGTCCTTTGAGAATTTTCT+CGG + chr3_1:85179397-85179416 None:intergenic 35.0%
AAGGACCTATAATTGACAGA+TGG - chr3_1:85179409-85179428 Msa0382550:intron 35.0%
AGGACCTATAATTGACAGAT+GGG - chr3_1:85179410-85179429 Msa0382550:intron 35.0%
TCAACCCATCTGTCAATTAT+AGG + chr3_1:85179417-85179436 None:intergenic 35.0%
AGAAAATGTCTATGGTCTCA+AGG - chr3_1:85179522-85179541 Msa0382550:intron 35.0%
!!! AGGAATACACATGCCATTTT+TGG - chr3_1:85179542-85179561 Msa0382550:CDS 35.0%
!!! GGAATACACATGCCATTTTT+GGG - chr3_1:85179543-85179562 Msa0382550:CDS 35.0%
!! ACATTTTTCGATCAGAGACA+AGG - chr3_1:85179576-85179595 Msa0382550:CDS 35.0%
ATTATGTACCTGGAAGATGT+TGG - chr3_1:85179676-85179695 Msa0382550:CDS 35.0%
TTATGTACCTGGAAGATGTT+GGG - chr3_1:85179677-85179696 Msa0382550:CDS 35.0%
!! TACTTTCTGTTGGCTTGTTT+GGG + chr3_1:85179791-85179810 None:intergenic 35.0%
CTCAAGAAAAAAGCCAATGA+AGG - chr3_1:85179831-85179850 Msa0382550:CDS 35.0%
AAACCGTCTTTCTTAAAAGC+CGG + chr3_1:85179900-85179919 None:intergenic 35.0%
CGAACAGTTATCAGTTTCAT+AGG - chr3_1:85180104-85180123 Msa0382550:CDS 35.0%
ACAGTTATCAGTTTCATAGG+TGG - chr3_1:85180107-85180126 Msa0382550:CDS 35.0%
TTTCATCAACCAAATTTCCC+AGG - chr3_1:85180209-85180228 Msa0382550:CDS 35.0%
!! CTTTCTTAATAGAAGCACCT+GGG + chr3_1:85180229-85180248 None:intergenic 35.0%
! TGTTGTACAATTTTGAGCAG+AGG - chr3_1:85180312-85180331 Msa0382550:CDS 35.0%
ATAACATTGCATCAGAAGGA+TGG + chr3_1:85180409-85180428 None:intergenic 35.0%
TCTGATAACATTGCATCAGA+AGG + chr3_1:85180413-85180432 None:intergenic 35.0%
GCAATGTTATCAGAAGAAGA+TGG - chr3_1:85180419-85180438 Msa0382550:CDS 35.0%
CAGTTGTTTAGATCCATTGA+TGG - chr3_1:85180458-85180477 Msa0382550:CDS 35.0%
TTGTTTAGATCCATTGATGG+TGG - chr3_1:85180461-85180480 Msa0382550:CDS 35.0%
!! TAACTTCATTTGGTGCTTGA+GGG + chr3_1:85180502-85180521 None:intergenic 35.0%
!! ATAACTTCATTTGGTGCTTG+AGG + chr3_1:85180503-85180522 None:intergenic 35.0%
!! ATTGAATTAGGCCTTGTTAG+TGG - chr3_1:85180521-85180540 Msa0382550:CDS 35.0%
! TGTTGTCTTTTCCACTAACA+AGG + chr3_1:85180535-85180554 None:intergenic 35.0%
ATCTTCAATGACAACTCCTT+TGG + chr3_1:85180710-85180729 None:intergenic 35.0%
CAGTTCAGGCAATATTAGAT+TGG - chr3_1:85180813-85180832 Msa0382550:CDS 35.0%
AAAAGGGAGAGTAAGAAAGA+TGG - chr3_1:85180941-85180960 Msa0382550:CDS 35.0%
GTTCATTCCAAGATGATGAT+AGG - chr3_1:85181043-85181062 Msa0382550:CDS 35.0%
CATCTTACCTATCATCATCT+TGG + chr3_1:85181053-85181072 None:intergenic 35.0%
!!! TTTTTAGGTGGTTTCTAAGG+TGG - chr3_1:85181138-85181157 Msa0382550:CDS 35.0%
!!! TTTTAGGTGGTTTCTAAGGT+GGG - chr3_1:85181139-85181158 Msa0382550:CDS 35.0%
ATGTATTCATCATCCACTAC+AGG + chr3_1:85181420-85181439 None:intergenic 35.0%
AGAATCAAAGCCATTGTATC+AGG + chr3_1:85181807-85181826 None:intergenic 35.0%
!! GATACAATGGCTTTGATTCT+TGG - chr3_1:85181807-85181826 Msa0382550:intron 35.0%
TCTATGATAACAACCTGTCT+TGG + chr3_1:85181902-85181921 None:intergenic 35.0%
TGATGAAATCATGTGGTACA+AGG - chr3_1:85181982-85182001 Msa0382550:five_prime_UTR 35.0%
GTTGCAAGCTGGATGTAATT+TGG - chr3_1:85178689-85178708 Msa0382550:three_prime_UTR 40.0%
TAAAGGGAACAACACACAAG+GGG - chr3_1:85179017-85179036 Msa0382550:CDS 40.0%
!! AGATTTCTAGCCCAAGTCAA+GGG - chr3_1:85179043-85179062 Msa0382550:CDS 40.0%
CAAGATACAACCCTTGACTT+GGG + chr3_1:85179056-85179075 None:intergenic 40.0%
ACAAGATACAACCCTTGACT+TGG + chr3_1:85179057-85179076 None:intergenic 40.0%
TTAAATTGTGTACCTCAGGC+CGG + chr3_1:85179081-85179100 None:intergenic 40.0%
CCAACAATCTTCATCACAAG+TGG + chr3_1:85179177-85179196 None:intergenic 40.0%
CCACTTGTGATGAAGATTGT+TGG - chr3_1:85179174-85179193 Msa0382550:intron 40.0%
TTGGACGAACCAGAATGATA+GGG - chr3_1:85179238-85179257 Msa0382550:intron 40.0%
!! TCATTCCATTTCGGGTTTGA+GGG + chr3_1:85179270-85179289 None:intergenic 40.0%
CAAAGGTCTCATTCCATTTC+GGG + chr3_1:85179278-85179297 None:intergenic 40.0%
CCAATTGGTGCAACTCTAAT+CGG - chr3_1:85179354-85179373 Msa0382550:intron 40.0%
!! CCTTTGAGAATTTTCTCGGA+AGG + chr3_1:85179393-85179412 None:intergenic 40.0%
CCTTCCGAGAAAATTCTCAA+AGG - chr3_1:85179390-85179409 Msa0382550:intron 40.0%
! GCAATTCTCTAGTGTCATTG+AGG - chr3_1:85179497-85179516 Msa0382550:intron 40.0%
CATCCATGGATACCAATATC+TGG - chr3_1:85179645-85179664 Msa0382550:CDS 40.0%
GTTCCAGATATTGGTATCCA+TGG + chr3_1:85179651-85179670 None:intergenic 40.0%
ATATCTTCCCAACATCTTCC+AGG + chr3_1:85179687-85179706 None:intergenic 40.0%
!! CTACTTTCTGTTGGCTTGTT+TGG + chr3_1:85179792-85179811 None:intergenic 40.0%
AGGGTGATACTACTTTCTGT+TGG + chr3_1:85179801-85179820 None:intergenic 40.0%
ACAGAAAGTAGTATCACCCT+AGG - chr3_1:85179801-85179820 Msa0382550:CDS 40.0%
TTTCTTAAAAGCCGGAACAG+AGG + chr3_1:85179892-85179911 None:intergenic 40.0%
!! GTTCCGGCTTTTAAGAAAGA+CGG - chr3_1:85179894-85179913 Msa0382550:CDS 40.0%
!!! CTATGCTTTTTCCACCATCA+GGG + chr3_1:85179998-85180017 None:intergenic 40.0%
!!! ACTATGCTTTTTCCACCATC+AGG + chr3_1:85179999-85180018 None:intergenic 40.0%
! GGTGGAAAAAGCATAGTTCA+AGG - chr3_1:85180002-85180021 Msa0382550:CDS 40.0%
TTTGCGATCCTTCAACATGA+TGG + chr3_1:85180082-85180101 None:intergenic 40.0%
!! ATAGAAGCACCTGGGAAATT+TGG + chr3_1:85180221-85180240 None:intergenic 40.0%
!! CCTTTCTTAATAGAAGCACC+TGG + chr3_1:85180230-85180249 None:intergenic 40.0%
CCAGGTGCTTCTATTAAGAA+AGG - chr3_1:85180227-85180246 Msa0382550:CDS 40.0%
GGTGCTTCTATTAAGAAAGG+TGG - chr3_1:85180230-85180249 Msa0382550:CDS 40.0%
TTGCAGTGAATATCATGCCA+CGG + chr3_1:85180266-85180285 None:intergenic 40.0%
GATATTCACTGCAAGCTAGA+AGG - chr3_1:85180272-85180291 Msa0382550:CDS 40.0%
TACAACACATCCCATGCAAT+AGG + chr3_1:85180299-85180318 None:intergenic 40.0%
! TGTACAATTTTGAGCAGAGG+TGG - chr3_1:85180315-85180334 Msa0382550:CDS 40.0%
! GTACAATTTTGAGCAGAGGT+GGG - chr3_1:85180316-85180335 Msa0382550:CDS 40.0%
GAATTGGGAACAGGAATTGT+TGG + chr3_1:85180364-85180383 None:intergenic 40.0%
TATTTCCTAGGGAGTTCCTA+TGG - chr3_1:85180632-85180651 Msa0382550:CDS 40.0%
ATCAGTTGAATGCCAACCAT+AGG + chr3_1:85180651-85180670 None:intergenic 40.0%
TGCATTGCATCTCATACCAA+AGG - chr3_1:85180691-85180710 Msa0382550:CDS 40.0%
!! AGAGAGGTTTGTTGTGTATG+TGG - chr3_1:85180751-85180770 Msa0382550:CDS 40.0%
TGTATGTGGTGATTCCAATG+TGG - chr3_1:85180765-85180784 Msa0382550:CDS 40.0%
CTCAGTATACATCATCTCCA+TGG + chr3_1:85180849-85180868 None:intergenic 40.0%
GCTCTATGATAATCACTGTC+AGG + chr3_1:85180995-85181014 None:intergenic 40.0%
!! TTTAGGTGGTTTCTAAGGTG+GGG - chr3_1:85181140-85181159 Msa0382550:CDS 40.0%
AACCAAAGATCAATGGATGG+TGG - chr3_1:85181462-85181481 Msa0382550:intron 40.0%
TTCCACCATCCATTGATCTT+TGG + chr3_1:85181467-85181486 None:intergenic 40.0%
AAGAGACACAGAGATTGCAA+TGG - chr3_1:85181485-85181504 Msa0382550:intron 40.0%
AGAGACACAGAGATTGCAAT+GGG - chr3_1:85181486-85181505 Msa0382550:intron 40.0%
AGACCACAAGGTCAAGTATA+TGG - chr3_1:85181555-85181574 Msa0382550:intron 40.0%
AAGCCATATACTTGACCTTG+TGG + chr3_1:85181561-85181580 None:intergenic 40.0%
AAGGTCAAGTATATGGCTTC+AGG - chr3_1:85181562-85181581 Msa0382550:intron 40.0%
TTTACGCATTCCACACTTTC+AGG + chr3_1:85181639-85181658 None:intergenic 40.0%
CTTCAACAGGATACCGTAAA+AGG + chr3_1:85181737-85181756 None:intergenic 40.0%
TTTACGGTATCCTGTTGAAG+TGG - chr3_1:85181737-85181756 Msa0382550:intron 40.0%
TTACGGTATCCTGTTGAAGT+GGG - chr3_1:85181738-85181757 Msa0382550:intron 40.0%
GAAGTGTGACATCACTTTCA+GGG - chr3_1:85181769-85181788 Msa0382550:intron 40.0%
TAGGACTAGGTGGTAAGTAT+GGG + chr3_1:85181855-85181874 None:intergenic 40.0%
ATAGTGTATGAACGAGCAAG+TGG + chr3_1:85182026-85182045 None:intergenic 40.0%
AAAATGCCTCAGCTGCTACA+TGG - chr3_1:85178633-85178652 Msa0382550:intron 45.0%
AAATGCCTCAGCTGCTACAT+GGG - chr3_1:85178634-85178653 Msa0382550:intron 45.0%
!! GAAGTTGATAGGTTGCAAGC+TGG - chr3_1:85178678-85178697 Msa0382550:three_prime_UTR 45.0%
!! GAGATTTCTAGCCCAAGTCA+AGG - chr3_1:85179042-85179061 Msa0382550:CDS 45.0%
TCAAGGGTTGTATCTTGTGC+CGG - chr3_1:85179059-85179078 Msa0382550:CDS 45.0%
GTTGGACGAACCAGAATGAT+AGG - chr3_1:85179237-85179256 Msa0382550:intron 45.0%
! GGGTTGATTCCCTATCATTC+TGG + chr3_1:85179250-85179269 None:intergenic 45.0%
ATCAACCCTCAAACCCGAAA+TGG - chr3_1:85179262-85179281 Msa0382550:intron 45.0%
!! CTCATTCCATTTCGGGTTTG+AGG + chr3_1:85179271-85179290 None:intergenic 45.0%
CCGATTAGAGTTGCACCAAT+TGG + chr3_1:85179357-85179376 None:intergenic 45.0%
!!! ATTTTAGAACCGCCTGGTAC+AGG + chr3_1:85179465-85179484 None:intergenic 45.0%
!!! ACACGAATTTTAGAACCGCC+TGG + chr3_1:85179471-85179490 None:intergenic 45.0%
GTACGCTGAACTCCCAAAAA+TGG + chr3_1:85179558-85179577 None:intergenic 45.0%
TTCGATCAGAGACAAGGTTG+TGG - chr3_1:85179582-85179601 Msa0382550:CDS 45.0%
TCCATGGATGAACACTGTCA+GGG + chr3_1:85179635-85179654 None:intergenic 45.0%
ATCCATGGATGAACACTGTC+AGG + chr3_1:85179636-85179655 None:intergenic 45.0%
CTTGTTTGGGTCCCTAATCA+AGG + chr3_1:85179778-85179797 None:intergenic 45.0%
!! GTTGATGGCCATCATGTTGA+AGG - chr3_1:85180071-85180090 Msa0382550:CDS 45.0%
!! GGTGGTATTGATCTGTGTGA+TGG - chr3_1:85180125-85180144 Msa0382550:CDS 45.0%
ATATCATGCCACGGTTCTCT+AGG + chr3_1:85180257-85180276 None:intergenic 45.0%
AGCTAGAAGGACCTATTGCA+TGG - chr3_1:85180285-85180304 Msa0382550:CDS 45.0%
GCTAGAAGGACCTATTGCAT+GGG - chr3_1:85180286-85180305 Msa0382550:CDS 45.0%
CAAGCTCTTGAATTGGGAAC+AGG + chr3_1:85180373-85180392 None:intergenic 45.0%
CAGAAGAAGATGGCGAAACT+TGG - chr3_1:85180429-85180448 Msa0382550:CDS 45.0%
AGAAACAGCACCACCATCAA+TGG + chr3_1:85180474-85180493 None:intergenic 45.0%
GCAAAATTGAAGCTGGAGAG+AGG - chr3_1:85180735-85180754 Msa0382550:CDS 45.0%
AGATTGGCAAAGAAGGACCA+TGG - chr3_1:85180829-85180848 Msa0382550:CDS 45.0%
TGATAATCACTGTCAGGCTC+TGG + chr3_1:85180989-85181008 None:intergenic 45.0%
!! TTAGGTGGTTTCTAAGGTGG+GGG - chr3_1:85181141-85181160 Msa0382550:CDS 45.0%
GGCATTTCCCGTAAGAAGAT+TGG - chr3_1:85181231-85181250 Msa0382550:CDS 45.0%
GATGTGGATGCTAGATGATG+AGG + chr3_1:85181522-85181541 None:intergenic 45.0%
CATCTAGCATCCACATCCAA+TGG - chr3_1:85181525-85181544 Msa0382550:CDS 45.0%
TCTTTGTGAGCCATTGGATG+TGG + chr3_1:85181538-85181557 None:intergenic 45.0%
TTGTGGTCTTTGTGAGCCAT+TGG + chr3_1:85181544-85181563 None:intergenic 45.0%
AATGGCTCACAAAGACCACA+AGG - chr3_1:85181543-85181562 Msa0382550:CDS 45.0%
!! ATGGCTTCAGGAGAGCATTA+TGG - chr3_1:85181574-85181593 Msa0382550:intron 45.0%
! TTTTGACGAGCCTGAAAGTG+TGG - chr3_1:85181626-85181645 Msa0382550:intron 45.0%
!! TTTTGAACCGTGTTGCTGAG+AGG - chr3_1:85181661-85181680 Msa0382550:intron 45.0%
TCCAATTCCTCTCAGCAACA+CGG + chr3_1:85181671-85181690 None:intergenic 45.0%
! GGAAGTGTGACATCACTTTC+AGG - chr3_1:85181768-85181787 Msa0382550:intron 45.0%
CTAGGACTAGGTGGTAAGTA+TGG + chr3_1:85181856-85181875 None:intergenic 45.0%
!!! AAAAAATTGAATTTTAATTT+AGG - chr3_1:85178562-85178581 Msa0382550:three_prime_UTR 5.0%
GCTGCTACATGGGACACTTA+AGG - chr3_1:85178644-85178663 Msa0382550:intron 50.0%
GAAGATCATCGTCCTGTACC+AGG - chr3_1:85179450-85179469 Msa0382550:intron 50.0%
TCCCTGACAGTGTTCATCCA+TGG - chr3_1:85179631-85179650 Msa0382550:CDS 50.0%
TTATGTCCGCGTAACCCTGA+TGG - chr3_1:85179981-85180000 Msa0382550:CDS 50.0%
TTTCCACCATCAGGGTTACG+CGG + chr3_1:85179990-85180009 None:intergenic 50.0%
CAGAGGTGGGAAAAGCAAGT+CGG - chr3_1:85180329-85180348 Msa0382550:CDS 50.0%
AGAGGTGGGAAAAGCAAGTC+GGG - chr3_1:85180330-85180349 Msa0382550:CDS 50.0%
TCCTAGGGAGTTCCTATGGT+TGG - chr3_1:85180636-85180655 Msa0382550:CDS 50.0%
GTGATTCCAATGTGGCCAGA+AGG - chr3_1:85180773-85180792 Msa0382550:CDS 50.0%
GGTATACCTTCTGGCCACAT+TGG + chr3_1:85180782-85180801 None:intergenic 50.0%
GCACTCTCAGGTATACCTTC+TGG + chr3_1:85180791-85180810 None:intergenic 50.0%
! ACCTGAGAGTGCATCAGTTC+AGG - chr3_1:85180799-85180818 Msa0382550:CDS 50.0%
!! AGGTGGGGGAGTGTTTCATA+TGG - chr3_1:85181155-85181174 Msa0382550:CDS 50.0%
! ACCGTGTTGCTGAGAGGAAT+TGG - chr3_1:85181667-85181686 Msa0382550:intron 50.0%
CCATCTTCACCCACTTCAAC+AGG + chr3_1:85181750-85181769 None:intergenic 50.0%
CCTGTTGAAGTGGGTGAAGA+TGG - chr3_1:85181747-85181766 Msa0382550:intron 50.0%
AGGTGGTAAGTATGGGAGGA+AGG + chr3_1:85181848-85181867 None:intergenic 50.0%
GACTAGGTGGTAAGTATGGG+AGG + chr3_1:85181852-85181871 None:intergenic 50.0%
TGTGCTAGCTAGCTAGGACT+AGG + chr3_1:85181868-85181887 None:intergenic 50.0%
! AAGCACTGTGCTAGCTAGCT+AGG + chr3_1:85181874-85181893 None:intergenic 50.0%
CTAGCTAGCACAGTGCTTGA+CGG - chr3_1:85181876-85181895 Msa0382550:CDS 50.0%
GGGGTCGGGAGAGGAAATAA+TGG + chr3_1:85178532-85178551 None:intergenic 55.0%
CAAAATGTAGGGGTCGGGAG+AGG + chr3_1:85178541-85178560 None:intergenic 55.0%
AGTGTCCCATGTAGCAGCTG+AGG + chr3_1:85178642-85178661 None:intergenic 55.0%
! TTGTATCTTGTGCCGGCCTG+AGG - chr3_1:85179066-85179085 Msa0382550:CDS 55.0%
GATCATCGTCCTGTACCAGG+CGG - chr3_1:85179453-85179472 Msa0382550:intron 55.0%
TGTCAGGGACATGAGCGTCT+TGG + chr3_1:85179620-85179639 None:intergenic 55.0%
GGACGACAGAACCTCTGTTC+CGG - chr3_1:85179878-85179897 Msa0382550:CDS 55.0%
AAGGTGGTCCTAGAGAACCG+TGG - chr3_1:85180246-85180265 Msa0382550:CDS 55.0%
GCCAACCATAGGAACTCCCT+AGG + chr3_1:85180640-85180659 None:intergenic 55.0%
GCCTGAACTGATGCACTCTC+AGG + chr3_1:85180803-85180822 None:intergenic 55.0%
GCTAGCTAGCTAGGACTAGG+TGG + chr3_1:85181865-85181884 None:intergenic 55.0%
TGTCCGCGTAACCCTGATGG+TGG - chr3_1:85179984-85180003 Msa0382550:CDS 60.0%
! TCAGGCTCTGGTTGCTCTGG+AGG + chr3_1:85180977-85180996 None:intergenic 60.0%
! CTGTCAGGCTCTGGTTGCTC+TGG + chr3_1:85180980-85180999 None:intergenic 60.0%
CAGTGCTTGACGGCCAAGAC+AGG - chr3_1:85181886-85181905 Msa0382550:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85178503 85182088 85178503 ID=Msa0382550;Name=Msa0382550
chr3_1 mRNA 85178503 85182088 85178503 ID=Msa0382550-mRNA-1;Parent=Msa0382550;Name=Msa0382550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=133|1|1|1|0.75|0.6|5|187|825
chr3_1 exon 85178503 85178642 85178503 ID=Msa0382550-mRNA-1:exon:22287;Parent=Msa0382550-mRNA-1
chr3_1 exon 85178675 85179167 85178675 ID=Msa0382550-mRNA-1:exon:22286;Parent=Msa0382550-mRNA-1
chr3_1 exon 85179527 85181402 85179527 ID=Msa0382550-mRNA-1:exon:22285;Parent=Msa0382550-mRNA-1
chr3_1 exon 85181504 85181569 85181504 ID=Msa0382550-mRNA-1:exon:22284;Parent=Msa0382550-mRNA-1
chr3_1 exon 85181866 85182088 85181866 ID=Msa0382550-mRNA-1:exon:22283;Parent=Msa0382550-mRNA-1
chr3_1 five_prime_UTR 85181956 85182088 85181956 ID=Msa0382550-mRNA-1:five_prime_utr;Parent=Msa0382550-mRNA-1
chr3_1 CDS 85181866 85181955 85181866 ID=Msa0382550-mRNA-1:cds;Parent=Msa0382550-mRNA-1
chr3_1 CDS 85181504 85181569 85181504 ID=Msa0382550-mRNA-1:cds;Parent=Msa0382550-mRNA-1
chr3_1 CDS 85179527 85181402 85179527 ID=Msa0382550-mRNA-1:cds;Parent=Msa0382550-mRNA-1
chr3_1 CDS 85178722 85179167 85178722 ID=Msa0382550-mRNA-1:cds;Parent=Msa0382550-mRNA-1
chr3_1 three_prime_UTR 85178675 85178721 85178675 ID=Msa0382550-mRNA-1:three_prime_utr;Parent=Msa0382550-mRNA-1
chr3_1 three_prime_UTR 85178503 85178642 85178503 ID=Msa0382550-mRNA-1:three_prime_utr;Parent=Msa0382550-mRNA-1
Gene Sequence

>Msa0382550

ATGCCTCAGCTGCTACATGGGACACTTAAGGTAACCATAAGTGAAGTTGATAGGTTGCAAGCTGGATGTAATTTGGATTTCTGTCGAAAGGGAACAACACACAAGGGGAAGAGATTTCTAGCCCAAGTCAAGGGTTGTATCTTGTGCCGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGATAAAGCAAGGGTTGGACGAACCAGAATGATAGGGAATCAACCCTCAAACCCGAAATGGAATGAGACCTTTGAAATCTATTGTGCTCATTACATATCAAATATTGTATTCACTGTCAAAGATGATAATCCAATTGGTGCAACTCTAATCGGAAGAGCTTATATCCCTTCCGAGAAAATTCTCAAAGGACCTATAATTGACAGATGGGTTGAGATATTAGACGAAGAAGATCATCGTCCTGTACCAGGCGGTTCTAAAATTCGTGTCAGCATGCAATTCTCTAGTGTCATTGAGGATAGAAAATGTCTATGGTCTCAAGGAATACACATGCCATTTTTGGGAGTTCAGCGTACATTTTTCGATCAGAGACAAGGTTGTGGTGTTACTTTATACCAAGACGCTCATGTCCCTGACAGTGTTCATCCATGGATACCAATATCTGGAACAAAATATTATGTACCTGGAAGATGTTGGGAAGATATTTACAATGCCATTATGAATGCTAAAGTCTTTATTTACATAACTGGTTGGTCTGTTCATACAGAAATAACCTTGATTAGGGACCCAAACAAGCCAACAGAAAGTAGTATCACCCTAGGAGAAATACTCAAGAAAAAAGCCAATGAAGGTGTTAATGTTCTTGTGCTTGTTTGGGACGACAGAACCTCTGTTCCGGCTTTTAAGAAAGACGGTTTGATGGGAACACATGACCAAGAAACTGCAGAGTATTTTAAAAACACAAAGGTACGTTGTGTTTTATGTCCGCGTAACCCTGATGGTGGAAAAAGCATAGTTCAAGGTTTTGAAACTTCAACTATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGCCATCATGTTGAAGGATCGCAAAAGCGAACAGTTATCAGTTTCATAGGTGGTATTGATCTGTGTGATGGAAGATATGATACAATGGAACATCCTTTGTTTTCAACTTTGAACACAATCCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAAGAAAGGTGGTCCTAGAGAACCGTGGCATGATATTCACTGCAAGCTAGAAGGACCTATTGCATGGGATGTGTTGTACAATTTTGAGCAGAGGTGGGAAAAGCAAGTCGGGAAGCAATTCCAACAATTCCTGTTCCCAATTCAAGAGCTTGATAGAATTCTAATCCATCCTTCTGATGCAATGTTATCAGAAGAAGATGGCGAAACTTGGAGCGTTCAGTTGTTTAGATCCATTGATGGTGGTGCTGTTTCTAACTTCCCTCAAGCACCAAATGAAGTTATTGAATTAGGCCTTGTTAGTGGAAAAGACAACATCATTGATAGAAGCATTCAAGATGCCTACATAAATGCTATACGAAGAGCAAAAAACTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCCTATGGTTGGCATTCAACTGATATTAAAGTTGAGGATATTGGTGCATTGCATCTCATACCAAAGGAGTTGTCATTGAAGATTGTTAGCAAAATTGAAGCTGGAGAGAGGTTTGTTGTGTATGTGGTGATTCCAATGTGGCCAGAAGGTATACCTGAGAGTGCATCAGTTCAGGCAATATTAGATTGGCAAAGAAGGACCATGGAGATGATGTATACTGAGATTGCTGATGCCATAAAAAAGAAGAATGTTGAAGCACACCCTCGTGATTATTTGACATTTTATTGTCTTGGTAAAAGGGAGAGTAAGAAAGATGGAGAGTACACTCCTCCAGAGCAACCAGAGCCTGACAGTGATTATCATAGAGCACAAAAGTCTAGAAGATTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATAGTGATTGGTTCAGCCAACATAAACCAAAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGTGCATTTCAACCTCATCATCTAGCATCCACATCCAATGGCTCACAAAGACCACAAGGTCAAGTATATGGCTTCAGGAGAGCATTATGGTATGAACATATTGGAGACAACAGTGATGATTTTGACGAGCCTGAAAGTGTGGAATGCGTAAAACTTTTGAACCGTGTTGCTGAGAGGAATTGGAAATTATACTGTGATGATGCATTAGATGAAAGTGTAAATACTCACCTTTTACGGTATCCTGTTGAAGTGGGTGAAGATGGAAGTGTGACATCACTTTCAGGGATGCAATATTTTCCTGATACAATGGCTTTGATTCTTGGTTCAAAATCTGATTACCTTCCTCCCATACTTACCACCTAG
Protein sequence

>Msa0382550

MPQLLHGTLKVTISEVDRLQAGCNLDFCRKGTTHKGKRFLAQVKGCILCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSNPKWNETFEIYCAHYISNIVFTVKDDNPIGATLIGRAYIPSEKILKGPIIDRWVEILDEEDHRPVPGGSKIRVSMQFSSVIEDRKCLWSQGIHMPFLGVQRTFFDQRQGCGVTLYQDAHVPDSVHPWIPISGTKYYVPGRCWEDIYNAIMNAKVFIYITGWSVHTEITLIRDPNKPTESSITLGEILKKKANEGVNVLVLVWDDRTSVPAFKKDGLMGTHDQETAEYFKNTKVRCVLCPRNPDGGKSIVQGFETSTMFTHHQKTIVVDGHHVEGSQKRTVISFIGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKQFQQFLFPIQELDRILIHPSDAMLSEEDGETWSVQLFRSIDGGAVSNFPQAPNEVIELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWHSTDIKVEDIGALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYTEIADAIKKKNVEAHPRDYLTFYCLGKRESKKDGEYTPPEQPEPDSDYHRAQKSRRFMIYVHSKMMIVDDEYIVIGSANINQRSMDGGRDTEIAMGAFQPHHLASTSNGSQRPQGQVYGFRRALWYEHIGDNSDDFDEPESVECVKLLNRVAERNWKLYCDDALDESVNTHLLRYPVEVGEDGSVTSLSGMQYFPDTMALILGSKSDYLPPILTT*