AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0527770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527770 MtrunA17_Chr4g0012861 98.010 603 11 1 120 722 39 640 0.0 1231
Msa0527770 MtrunA17_Chr3g0107701 50.649 616 285 6 120 719 49 661 0.0 590
Msa0527770 MtrunA17_Chr5g0432721 45.321 545 279 7 121 652 40 578 2.75e-143 439
Msa0527770 MtrunA17_Chr2g0281191 55.467 375 129 4 351 725 308 644 2.13e-128 403
Msa0527770 MtrunA17_Chr2g0281191 38.182 110 48 2 109 213 46 140 1.36e-16 84.3
Msa0527770 MtrunA17_Chr7g0244871 68.478 92 29 0 389 480 6 97 5.15e-39 139
Msa0527770 MtrunA17_Chr7g0251891 37.838 111 68 1 395 504 16 126 2.51e-19 87.0
Msa0527770 MtrunA17_Chr7g0237841 35.714 98 62 1 395 491 623 720 1.07e-14 78.2
Msa0527770 MtrunA17_Chr1g0178071 35.556 135 67 6 376 497 54 181 1.56e-14 75.5
Msa0527770 MtrunA17_Chr8g0345771 37.273 110 61 4 395 498 171 278 2.39e-14 76.3
Msa0527770 MtrunA17_Chr7g0276471 40.659 91 49 3 395 482 117 205 8.68e-14 74.3
Msa0527770 MtrunA17_Chr7g0244881 41.441 111 62 2 280 387 3 113 1.06e-13 68.2
Msa0527770 MtrunA17_Chr7g0266821 39.252 107 58 5 400 502 65 168 9.34e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0527770 AT4G32010.2 52.902 603 205 9 121 719 42 569 0.0 604
Msa0527770 AT4G32010.1 52.554 607 205 10 121 719 42 573 0.0 598
Msa0527770 AT2G30470.1 49.256 605 253 15 120 721 44 597 3.15e-173 516
Msa0527770 AT4G21550.3 33.904 584 272 15 101 651 26 528 1.54e-84 278
Msa0527770 AT4G21550.2 33.099 568 267 14 101 636 26 512 1.28e-78 261
Msa0527770 AT4G21550.1 34.075 584 272 14 101 652 26 528 7.57e-78 265
Msa0527770 AT3G26790.1 39.091 110 66 1 395 503 91 200 3.83e-20 92.4
Msa0527770 AT5G06250.2 32.948 173 95 5 395 548 45 215 1.01e-16 81.6
Msa0527770 AT5G06250.4 32.948 173 95 5 395 548 45 215 1.05e-16 81.6
Msa0527770 AT5G06250.5 32.948 173 95 5 395 548 45 215 1.08e-16 81.3
Msa0527770 AT3G24650.1 37.931 116 70 2 395 508 571 686 1.33e-15 81.3
Msa0527770 AT1G28300.1 40.367 109 61 3 375 480 149 256 1.62e-15 79.3
Msa0527770 AT2G36080.4 39.815 108 56 4 395 495 37 142 2.40e-15 75.1
Msa0527770 AT2G36080.2 39.815 108 56 4 395 495 37 142 2.40e-15 75.1
Msa0527770 AT1G13260.1 39.640 111 60 5 394 499 186 294 3.88e-15 78.2
Msa0527770 AT5G06250.1 33.103 145 81 4 395 525 45 187 5.27e-15 76.3
Msa0527770 AT5G06250.3 33.103 145 81 4 395 525 45 187 6.03e-15 76.3
Msa0527770 AT2G36080.3 39.815 108 56 4 395 495 37 142 6.12e-15 75.5
Msa0527770 AT2G36080.1 39.815 108 56 4 395 495 37 142 6.63e-15 75.5
Msa0527770 AT4G01500.1 38.261 115 59 4 378 482 9 121 3.23e-14 75.1
Msa0527770 AT1G68840.2 43.011 93 46 4 395 482 187 277 6.83e-14 74.3
Msa0527770 AT1G68840.1 43.011 93 46 4 395 482 187 277 6.83e-14 74.3
Msa0527770 AT2G46870.1 39.560 91 50 3 395 482 34 122 8.87e-14 73.6
Msa0527770 AT3G11580.1 36.207 116 57 4 395 495 28 141 2.54e-13 71.2
Msa0527770 AT1G01030.2 40.659 91 49 3 395 482 55 143 6.82e-13 70.9
Msa0527770 AT1G01030.1 40.659 91 49 3 395 482 55 143 7.73e-13 71.2
Msa0527770 AT3G11580.4 36.207 116 57 4 395 495 28 141 1.42e-12 68.6
Msa0527770 AT3G11580.2 36.207 116 57 4 395 495 28 141 1.42e-12 68.6
Msa0527770 AT3G11580.5 36.207 116 57 4 395 495 28 141 1.42e-12 68.6
Msa0527770 AT3G11580.3 36.207 116 57 4 395 495 28 141 1.77e-12 70.1

Find 202 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTTTCAATTTAGATTT+TGG 0.133418 4_1:-423843 Msa0527770:CDS
TACATCCTGCTATTATTATT+TGG 0.167699 4_1:+423820 None:intergenic
CAACTCTTGATCTGTAATTC+TGG 0.172835 4_1:+424305 None:intergenic
TTACCCTCTGTTGGAGAATT+TGG 0.188202 4_1:-424681 Msa0527770:CDS
AACGGTTACCGGAGAGAAAA+TGG 0.205781 4_1:+427724 None:intergenic
GCATACCCCTCACATTTAAT+TGG 0.234093 4_1:+424802 None:intergenic
GCGGCGAGTTGCGGTGGTTT+TGG 0.267735 4_1:+427632 None:intergenic
AAGAAAAGAACTCGAAATAT+TGG 0.272591 4_1:-422796 Msa0527770:CDS
GGACGTGTATGGAGAACTTT+TGG 0.278484 4_1:-421906 Msa0527770:CDS
TCAAGTGAAACTTCCTATTC+TGG 0.278901 4_1:-423015 Msa0527770:CDS
CCAACAGAGGGTAAAACTTC+TGG 0.283471 4_1:+424690 None:intergenic
GAGGCCTTGCTATACGTATC+TGG 0.288912 4_1:+424373 None:intergenic
ATTACTTCAGCACATGCTTT+TGG 0.292122 4_1:+424045 None:intergenic
CCTATATTAAGTGGTTATTC+TGG 0.299020 4_1:-422976 Msa0527770:CDS
CAAACCTCACAATGTTGATT+TGG 0.320944 4_1:-424736 Msa0527770:CDS
ATCAGTTGCTTCCGCGATAT+TGG 0.327434 4_1:-424329 Msa0527770:CDS
ATTCAGGAGCCTCCTGTGTT+TGG 0.329853 4_1:-422187 Msa0527770:intron
TGTGGAATTGAAGTTGAAAA+TGG 0.332556 4_1:-427433 Msa0527770:CDS
TGAACGGAGGAGAAGAAGTT+AGG 0.335477 4_1:+427690 None:intergenic
CAACTGCAAGCTGGCGATAC+TGG 0.336996 4_1:-423760 Msa0527770:intron
ACAACACTTGGCTTAACTTC+TGG 0.343319 4_1:+422682 None:intergenic
CCCTGAGGGGAAACTTATAA+TGG 0.343393 4_1:-423179 Msa0527770:CDS
AGAGTTGGCCTAGGAGGTTT+AGG 0.345670 4_1:+424432 None:intergenic
TTCCCTTGGATTCAATTCAT+TGG 0.348370 4_1:+421773 None:intergenic
GTTCCGGTCACAGTTGGTTA+TGG 0.348632 4_1:+427587 None:intergenic
CACTGGAGCTGAAACTTACT+TGG 0.350730 4_1:-422735 Msa0527770:CDS
AATGAAAAGCCTAATGAATC+TGG 0.351647 4_1:-424876 Msa0527770:CDS
ACTTTCTAGAGAGCGCATTT+AGG 0.352085 4_1:+422917 None:intergenic
TCAAGAGTTGCAGCAAATAT+CGG 0.354064 4_1:-424292 Msa0527770:CDS
CGGAACTTCCCTCAAACTTC+TGG 0.357724 4_1:-427570 Msa0527770:CDS
TTTGCTGTTCCAGATTCATT+AGG 0.360782 4_1:+424867 None:intergenic
ATGTGAGGGGTATGCAAGTT+GGG 0.375012 4_1:-424794 Msa0527770:CDS
TCCCTTGGATTCAATTCATT+GGG 0.378007 4_1:+421774 None:intergenic
AGGACATTATGAAAGGGATT+TGG 0.378577 4_1:+424525 None:intergenic
AGGCCCTCAGGTTGAGAGAT+AGG 0.381204 4_1:+423901 None:intergenic
CAGAAGTTTGAGGGAAGTTC+CGG 0.386153 4_1:+427571 None:intergenic
ATTACCTGTGCAAGTACTTC+AGG 0.390989 4_1:-425379 Msa0527770:CDS
ATATTTGTGGTACGATCTAC+TGG 0.393389 4_1:-422154 Msa0527770:CDS
TGGCCTTCTTCAGTCTCAAA+AGG 0.396098 4_1:-422956 Msa0527770:CDS
ACTTACTTGGGAAGAGGCTC+AGG 0.399619 4_1:-422722 Msa0527770:CDS
GGAAACTTATAATGGGGTTC+AGG 0.403096 4_1:-423171 Msa0527770:CDS
TTCCTTCCCCGTCCTTCGGC+AGG 0.411704 4_1:+424351 None:intergenic
CCAGAATAACCACTTAATAT+AGG 0.414414 4_1:+422976 None:intergenic
TCTGGTTTGATTTCTCTAGA+AGG 0.414545 4_1:+424708 None:intergenic
ACTCTATCTCCAGGCTTAGA+AGG 0.416607 4_1:-424414 Msa0527770:CDS
TGAATTGAATCCAAGGGAAC+TGG 0.417947 4_1:-421769 Msa0527770:CDS
AAGGCCTCCTGCCGAAGGAC+GGG 0.419862 4_1:-424358 Msa0527770:CDS
AGAAAAGAACTCGAAATATT+GGG 0.421447 4_1:-422795 Msa0527770:CDS
GGTGACGTTAGCTTTGATTC+CGG 0.422066 4_1:-427549 Msa0527770:intron
TGGAGATAAGGCGGTGGTGG+TGG 0.424682 4_1:+427607 None:intergenic
GGGAATTATGCAGAAAATGA+TGG 0.428592 4_1:-424774 Msa0527770:CDS
TCTCCATACACGTCCACTTA+GGG 0.429073 4_1:+421914 None:intergenic
AACTCTTGATCTGTAATTCT+GGG 0.432750 4_1:+424306 None:intergenic
AATGTCACCTCCACTTCTAT+TGG 0.433907 4_1:-424478 Msa0527770:CDS
ATGTTCCATGCAAAAGAATC+TGG 0.435693 4_1:-425590 Msa0527770:CDS
TAAGGCGGTGGTGGTGGCGG+CGG 0.438754 4_1:+427613 None:intergenic
AGATAAGGCGGTGGTGGTGG+CGG 0.439982 4_1:+427610 None:intergenic
CCTGTGTTTCCTTCTAAGCC+TGG 0.440594 4_1:+424405 None:intergenic
ATTCTCATAAACACCAGAAT+AGG 0.444115 4_1:+423002 None:intergenic
TTCACTTGAATGAGAACCAT+TGG 0.445941 4_1:+423029 None:intergenic
TAATGTCCTTGTTGATGAAA+GGG 0.448219 4_1:-424511 Msa0527770:CDS
TTCTTCTCAGGAACCAGCAC+AGG 0.450915 4_1:+422814 None:intergenic
CCCATTATAAGTTTCCCCTC+AGG 0.451841 4_1:+423178 None:intergenic
AAAATGATGGGATGAGGTAC+TGG 0.452920 4_1:-424761 Msa0527770:CDS
TGCTGGTCGAATTGGTCGCT+TGG 0.454425 4_1:-424073 Msa0527770:CDS
AATGTGAGGGGTATGCAAGT+TGG 0.455328 4_1:-424795 Msa0527770:CDS
AAAAGATTATCCAGTTCCCT+TGG 0.457180 4_1:+421759 None:intergenic
CAATTTCATCGTGAGTCAAA+TGG 0.458649 4_1:-424642 Msa0527770:CDS
ATAATGTCCTTGTTGATGAA+AGG 0.463710 4_1:-424512 Msa0527770:CDS
GGCCTTCTTCAGTCTCAAAA+GGG 0.464157 4_1:-422955 Msa0527770:CDS
TGGAAAGAAGAGTATATTTG+TGG 0.465676 4_1:-422167 Msa0527770:CDS
TGTTGCATGAACGTTGTTTG+TGG 0.466630 4_1:-427402 Msa0527770:CDS
CAGTTGCATAGACTGAATAC+AGG 0.468777 4_1:+423777 None:intergenic
CCTGAGGGGAAACTTATAAT+GGG 0.471341 4_1:-423178 Msa0527770:CDS
GAGAATATACCTATATTAAG+TGG 0.472374 4_1:-422985 Msa0527770:CDS
AACAAATTCTGCTTCAGTAC+AGG 0.472669 4_1:-423143 Msa0527770:intron
CTGATTCCTTCCCCGTCCTT+CGG 0.474070 4_1:+424347 None:intergenic
AGGCCTCCTGCCGAAGGACG+GGG 0.474201 4_1:-424357 Msa0527770:CDS
CACAGTTGGTTATGGAGATA+AGG 0.482353 4_1:+427595 None:intergenic
TTATGGAGATAAGGCGGTGG+TGG 0.482957 4_1:+427604 None:intergenic
GCAAGTGATGCTGGTCGAAT+TGG 0.484028 4_1:-424081 Msa0527770:CDS
CAAGAGTTGCAGCAAATATC+GGG 0.484696 4_1:-424291 Msa0527770:CDS
TTCCCAGCAGTGCATATCTC+TGG 0.485291 4_1:-424829 Msa0527770:CDS
CCTCACAATGTTGATTTGGA+TGG 0.486454 4_1:-424732 Msa0527770:CDS
TAGCCAGAGATATGCACTGC+TGG 0.491104 4_1:+424826 None:intergenic
TATTGATAGCGAGGATGCAC+TGG 0.493835 4_1:-422752 Msa0527770:CDS
GTGGAACCTCTACGTCGATT+CGG 0.494921 4_1:-427383 Msa0527770:CDS
TTTGGCCAAATAATAATAGC+AGG 0.500753 4_1:-423825 Msa0527770:CDS
ATCAACAAGGACATTATGAA+AGG 0.502025 4_1:+424518 None:intergenic
CTTCCCCGTCCTTCGGCAGG+AGG 0.504076 4_1:+424354 None:intergenic
GTGAGTCAAATGGTTCATCT+AGG 0.506203 4_1:-424632 Msa0527770:CDS
GGCTAACCAATTAAATGTGA+GGG 0.506229 4_1:-424808 Msa0527770:CDS
TCACTTGAATGAGAACCATT+GGG 0.509159 4_1:+423030 None:intergenic
GTTGTCTTTACCACCTGTGC+TGG 0.513012 4_1:-422827 Msa0527770:CDS
CAAGGCCTCCTGCCGAAGGA+CGG 0.513301 4_1:-424359 Msa0527770:CDS
GTGGTGGCGGCGGCGAGTTG+CGG 0.513671 4_1:+427623 None:intergenic
CAGTCTATGCAACTGCAAGC+TGG 0.514895 4_1:-423769 Msa0527770:CDS
CCTGGAGATAGAGTTGGCCT+AGG 0.516685 4_1:+424423 None:intergenic
TGCAGTAACATTTAGCCGTA+TGG 0.517779 4_1:-423203 Msa0527770:intron
TCTCCATAACCAACTGTGAC+CGG 0.520011 4_1:-427590 Msa0527770:CDS
TTCTAGAGAGCGCATTTAGG+TGG 0.520190 4_1:+422920 None:intergenic
CCCTCCTATCTCTCAACCTG+AGG 0.521917 4_1:-423905 Msa0527770:CDS
TAAATGCGCTCTCTAGAAAG+TGG 0.523105 4_1:-422915 Msa0527770:CDS
GTGGCGGCGGCGAGTTGCGG+TGG 0.525255 4_1:+427626 None:intergenic
GCAAGATATATATGAATCAC+TGG 0.525449 4_1:-424586 Msa0527770:CDS
CTAACGTCACCAGAAGTTTG+AGG 0.527835 4_1:+427561 None:intergenic
ACGGTTACCGGAGAGAAAAT+GGG 0.527913 4_1:+427725 None:intergenic
ATGTAGAAATGCCTGAAAGC+AGG 0.533071 4_1:-422861 Msa0527770:CDS
AGGCCTTGCTATACGTATCT+GGG 0.533919 4_1:+424374 None:intergenic
TCCTCGATCATGACAACACT+TGG 0.535986 4_1:+422670 None:intergenic
CTCCCAATGAATTGAATCCA+AGG 0.539749 4_1:-421776 Msa0527770:CDS
TCAACAAGGACATTATGAAA+GGG 0.542098 4_1:+424519 None:intergenic
TAACGTCACCAGAAGTTTGA+GGG 0.542956 4_1:+427562 None:intergenic
ATGCTTAGTGCAAGTGATGC+TGG 0.543355 4_1:-424090 Msa0527770:CDS
CCTAGGCCAACTCTATCTCC+AGG 0.543621 4_1:-424423 Msa0527770:CDS
TTCTCCATACACGTCCACTT+AGG 0.543699 4_1:+421913 None:intergenic
CAGTTGGTGCTGACATGGAT+TGG 0.544785 4_1:-422888 Msa0527770:CDS
GAAGAAAGAAAGAGAAGGTG+AGG 0.550740 4_1:+427747 None:intergenic
ATACGCAAAGGAAGGCCCTC+AGG 0.550975 4_1:+423889 None:intergenic
ATTTGGCAAAGGAGCGGTAA+GGG 0.556170 4_1:+424542 None:intergenic
CCATTATAAGTTTCCCCTCA+GGG 0.557442 4_1:+423179 None:intergenic
AAGTCCTGAAGTACTTGCAC+AGG 0.558364 4_1:+425375 None:intergenic
GAACTCAGTTGGTGCTGACA+TGG 0.559385 4_1:-422893 Msa0527770:CDS
AAGATGTGAAAGGAAAAGAA+TGG 0.562266 4_1:-423864 Msa0527770:CDS
TTTCCGTCTAATATGCCCAA+TGG 0.563491 4_1:-423045 Msa0527770:CDS
GTTTCCCCTCAGGGTCCATA+CGG 0.563865 4_1:+423188 None:intergenic
CTTGGCTTAACTTCTGGAGG+TGG 0.565044 4_1:+422688 None:intergenic
GCTGAAACTTACTTGGGAAG+AGG 0.565759 4_1:-422728 Msa0527770:CDS
CGTGGAGGAGAGAGTTTGAA+CGG 0.568267 4_1:+427674 None:intergenic
ATGCAGAAAATGATGGGATG+AGG 0.568840 4_1:-424767 Msa0527770:CDS
TTCTCAGGAACCAGCACAGG+TGG 0.570575 4_1:+422817 None:intergenic
CCTCCTATCTCTCAACCTGA+GGG 0.572708 4_1:-423904 Msa0527770:CDS
ACGTCGATTCGGTGGCGGAA+AGG 0.573751 4_1:-427372 Msa0527770:intron
ACTTATAATGGGGTTCAGGA+AGG 0.575522 4_1:-423167 Msa0527770:CDS
CCTCTACGTCGATTCGGTGG+CGG 0.575763 4_1:-427377 Msa0527770:CDS
AGGGAAGTTCCGGTCACAGT+TGG 0.576253 4_1:+427581 None:intergenic
AGCCAGAGATATGCACTGCT+GGG 0.576349 4_1:+424827 None:intergenic
GATTTGGCAAAGGAGCGGTA+AGG 0.576714 4_1:+424541 None:intergenic
ACGGAGGAGAAGAAGTTAGG+AGG 0.576740 4_1:+427693 None:intergenic
TCTAGAAAGTGGAACTCAGT+TGG 0.578317 4_1:-422904 Msa0527770:CDS
GGAGATAGAGTTGGCCTAGG+AGG 0.578335 4_1:+424426 None:intergenic
TCTAGAGAGCGCATTTAGGT+GGG 0.579194 4_1:+422921 None:intergenic
TCCATGCAAAAGAATCTGGT+TGG 0.579415 4_1:-425586 Msa0527770:CDS
TTCAAAGAGTGGCACAATGG+TGG 0.580676 4_1:+424116 None:intergenic
GGAATTATGCAGAAAATGAT+GGG 0.581193 4_1:-424773 Msa0527770:CDS
CCTCAGGTTGAGAGATAGGA+GGG 0.582109 4_1:+423905 None:intergenic
TCTAAGCCTGGAGATAGAGT+TGG 0.583408 4_1:+424417 None:intergenic
TCAAATGGTTCATCTAGGAC+TGG 0.583729 4_1:-424627 Msa0527770:CDS
GATCTAGACGCCAATAGAAG+TGG 0.585121 4_1:+424468 None:intergenic
TATCTGCAGCGTCTCCATTG+TGG 0.587990 4_1:-425457 Msa0527770:intron
ATAGCAAGGCCTCCTGCCGA+AGG 0.591462 4_1:-424363 Msa0527770:CDS
AATGGGAAGAAAGAAAGAGA+AGG 0.592521 4_1:+427742 None:intergenic
ATACTCTTCTTTCCAAACAC+AGG 0.593392 4_1:+422175 None:intergenic
ACACTTGGCTTAACTTCTGG+AGG 0.596735 4_1:+422685 None:intergenic
TTATGAAAGGGATTTGGCAA+AGG 0.597001 4_1:+424531 None:intergenic
CCCTCAGGTTGAGAGATAGG+AGG 0.598922 4_1:+423904 None:intergenic
GCTTCCAAATTCTCCAACAG+AGG 0.599653 4_1:+424677 None:intergenic
TTCACATCTTGGATACGCAA+AGG 0.602051 4_1:+423877 None:intergenic
TCCCAATGAATTGAATCCAA+GGG 0.602257 4_1:-421775 Msa0527770:CDS
GAGGTTGCTTATTGATAGCG+AGG 0.605174 4_1:-422761 Msa0527770:CDS
GAACCATTGGGCATATTAGA+CGG 0.606117 4_1:+423042 None:intergenic
CATCTTGGATACGCAAAGGA+AGG 0.606572 4_1:+423881 None:intergenic
CTCTTCTTTCCAAACACAGG+AGG 0.606920 4_1:+422178 None:intergenic
CCATCCAAATCAACATTGTG+AGG 0.607409 4_1:+424732 None:intergenic
TGGCTAACCAATTAAATGTG+AGG 0.608102 4_1:-424809 Msa0527770:CDS
CTCCTGCCGAAGGACGGGGA+AGG 0.614694 4_1:-424353 Msa0527770:CDS
CTCCATACACGTCCACTTAG+GGG 0.615994 4_1:+421915 None:intergenic
TTGCGTATCCAAGATGTGAA+AGG 0.616182 4_1:-423874 Msa0527770:CDS
TCCATACACGTCCACTTAGG+GGG 0.618210 4_1:+421916 None:intergenic
AGAGTGTACTTCATGTGGCA+AGG 0.623087 4_1:-425561 Msa0527770:intron
TTTGTTCCCTTTCATCAACA+AGG 0.624287 4_1:+424505 None:intergenic
CTTCCAAATTCTCCAACAGA+GGG 0.627135 4_1:+424678 None:intergenic
TGGTTATGGAGATAAGGCGG+TGG 0.642720 4_1:+427601 None:intergenic
CTAGACGCCAATAGAAGTGG+AGG 0.644014 4_1:+424471 None:intergenic
CAGCTTGAAATACTTGACAC+TGG 0.646808 4_1:-425415 Msa0527770:CDS
TTGAAGCAACACATCCACAA+TGG 0.648024 4_1:+425443 None:intergenic
GTAATTCTGGGCCAATATCG+CGG 0.648517 4_1:+424318 None:intergenic
TATTTGTGGTACGATCTACT+GGG 0.648538 4_1:-422153 Msa0527770:intron
CCGCCACCGAATCGACGTAG+AGG 0.651077 4_1:+427377 None:intergenic
GCCAAGTGTTGTCATGATCG+AGG 0.651574 4_1:-422671 Msa0527770:CDS
AGTTGCATAGACTGAATACA+GGG 0.651610 4_1:+423778 None:intergenic
ACTGGAGCTGAAACTTACTT+GGG 0.656896 4_1:-422734 Msa0527770:CDS
TTTCCCAGATACGTATAGCA+AGG 0.657040 4_1:-424377 Msa0527770:CDS
GTAACTATAAAAGCATAGCG+TGG 0.658342 4_1:+421691 None:intergenic
CTTAGAAGGAAACACAGGCA+TGG 0.658844 4_1:-424400 Msa0527770:CDS
CCAGGCTTAGAAGGAAACAC+AGG 0.660663 4_1:-424405 Msa0527770:CDS
GCTAACCAATTAAATGTGAG+GGG 0.663001 4_1:-424807 Msa0527770:CDS
ACCACAGGATAAGTGAGCAG+TGG 0.664291 4_1:-421993 Msa0527770:intron
GAACCTCTACGTCGATTCGG+TGG 0.665625 4_1:-427380 Msa0527770:CDS
CTGAGGGGAAACTTATAATG+GGG 0.667153 4_1:-423177 Msa0527770:CDS
GCATTTGTGTTGCAGCGTGG+AGG 0.669736 4_1:+427659 None:intergenic
TTTAGCCGTATGGACCCTGA+GGG 0.672269 4_1:-423193 Msa0527770:CDS
AAAGGGATTTGGCAAAGGAG+CGG 0.674141 4_1:+424536 None:intergenic
TTTGCATTTGTGTTGCAGCG+TGG 0.677898 4_1:+427656 None:intergenic
GGAGGAGAGAGTTTGAACGG+AGG 0.682658 4_1:+427677 None:intergenic
ATTTAGCCGTATGGACCCTG+AGG 0.687200 4_1:-423194 Msa0527770:CDS
AGTTGGTTATGGAGATAAGG+CGG 0.706486 4_1:+427598 None:intergenic
TTGCATAGACTGAATACAGG+GGG 0.707100 4_1:+423780 None:intergenic
TGGAGAGAGTGTACTTCATG+TGG 0.711681 4_1:-425566 Msa0527770:CDS
CTTGAAATACTTGACACTGG+TGG 0.733966 4_1:-425412 Msa0527770:CDS
TTAGCCGTATGGACCCTGAG+GGG 0.752430 4_1:-423192 Msa0527770:CDS
GTTGCATAGACTGAATACAG+GGG 0.770443 4_1:+423779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTAATTTGAATTT+GGG - chr4_1:422403-422422 Msa0527770:intron 10.0%
!! TCAAAAATAAAATAAAATTG+AGG - chr4_1:422440-422459 Msa0527770:intron 10.0%
!!! TTTTTTATTTTTTGAAAACT+CGG + chr4_1:423061-423080 None:intergenic 10.0%
!!! GAATTTATGATTTTTTTTTT+TGG - chr4_1:424251-424270 Msa0527770:intron 10.0%
!!! TAATTTTTTTATCAATTCAT+AGG + chr4_1:424386-424405 None:intergenic 10.0%
!! TTCTTTAAATTGTTAATTAT+AGG - chr4_1:425242-425261 Msa0527770:intron 10.0%
!!! ATTATTTAGATTTTTTTCTT+TGG - chr4_1:425857-425876 Msa0527770:intron 10.0%
!! AGAAAAAAAATATTATATAG+AGG + chr4_1:425975-425994 None:intergenic 10.0%
!!! AAAATTTAGTTCAATATTTT+TGG + chr4_1:426089-426108 None:intergenic 10.0%
!!! TTTATTTGATACATTTTTTT+TGG - chr4_1:426199-426218 Msa0527770:intron 10.0%
!!! GTTTTTTGTTAATTTGAATT+TGG - chr4_1:422402-422421 Msa0527770:intron 15.0%
!!! TTTTTGTTAATTTGAATTTG+GGG - chr4_1:422404-422423 Msa0527770:intron 15.0%
!!! ATAGTTTAAAACGTTATTTT+TGG - chr4_1:422675-422694 Msa0527770:CDS 15.0%
!!! TATCAGCAATAATTATATTT+TGG + chr4_1:422773-422792 None:intergenic 15.0%
!!! AATTTCTTTTTCCATTTTTT+GGG + chr4_1:422818-422837 None:intergenic 15.0%
!!! GAGTTTTCAAAAAATAAAAA+AGG - chr4_1:423060-423079 Msa0527770:intron 15.0%
!!! CATATAATTATTTTTTTAGG+TGG + chr4_1:423234-423253 None:intergenic 15.0%
!! CACCTAAAAAAATAATTATA+TGG - chr4_1:423232-423251 Msa0527770:intron 15.0%
!! AATCATATATATAAACAAAC+AGG + chr4_1:423258-423277 None:intergenic 15.0%
!!! ATATATATGATTTTGAAGTT+TGG - chr4_1:423266-423285 Msa0527770:intron 15.0%
!!! ATTTTTTACTTATTTGAAGT+TGG - chr4_1:423784-423803 Msa0527770:CDS 15.0%
!!! TTTTTTACTTATTTGAAGTT+GGG - chr4_1:423785-423804 Msa0527770:CDS 15.0%
!!! ATTTCAATAGTCTTTTAATT+TGG - chr4_1:427460-427479 Msa0527770:intron 15.0%
!! TTATTGTTGTGAATTTATGA+AGG - chr4_1:422030-422049 Msa0527770:intron 20.0%
!!! TGATTTGATTTGAAATTGTA+CGG - chr4_1:422249-422268 Msa0527770:intron 20.0%
!!! TGTTTGTTAAATTGAATTTG+AGG - chr4_1:422343-422362 Msa0527770:intron 20.0%
!! AAGAATCAACAACATAAAAA+GGG + chr4_1:422562-422581 None:intergenic 20.0%
!! AAAGAATCAACAACATAAAA+AGG + chr4_1:422563-422582 None:intergenic 20.0%
!! AAATAAAATGTATGTAGTTG+CGG - chr4_1:422625-422644 Msa0527770:intron 20.0%
!!! CAATTTCTTTTTCCATTTTT+TGG + chr4_1:422819-422838 None:intergenic 20.0%
!! AAAAAAGCTGGATAATTATA+TGG - chr4_1:423202-423221 Msa0527770:intron 20.0%
!!! GGCCATATAATTATTTTTTT+AGG + chr4_1:423237-423256 None:intergenic 20.0%
!! ATTTACATCTATACTAATCA+TGG + chr4_1:423764-423783 None:intergenic 20.0%
!! CATTAAAATACAAAAGTTGT+GGG + chr4_1:423978-423997 None:intergenic 20.0%
!! TCATTAAAATACAAAAGTTG+TGG + chr4_1:423979-423998 None:intergenic 20.0%
!!! TTTTGTATTTTAATGAGCTA+TGG - chr4_1:423983-424002 Msa0527770:intron 20.0%
!! GGTTATTTATATATGTAACA+AGG + chr4_1:424158-424177 None:intergenic 20.0%
!! AAATAGATGAAATATCGTTT+CGG - chr4_1:424199-424218 Msa0527770:intron 20.0%
!! AAATCATAAATTCTGATCTT+GGG + chr4_1:424244-424263 None:intergenic 20.0%
!! AAAATCATAAATTCTGATCT+TGG + chr4_1:424245-424264 None:intergenic 20.0%
!!! ATCTTGTTTCATTATGTAAT+TGG - chr4_1:424332-424351 Msa0527770:CDS 20.0%
!!! ATACAAAATAACCCAATTTT+GGG + chr4_1:424522-424541 None:intergenic 20.0%
!!! AATACAAAATAACCCAATTT+TGG + chr4_1:424523-424542 None:intergenic 20.0%
!! TAAAGAACTAATTACAAAGT+TGG + chr4_1:425229-425248 None:intergenic 20.0%
!!! TAATAATGGGTAAATACAAA+AGG + chr4_1:425488-425507 None:intergenic 20.0%
!!! ATTTTTTCAGTTCTAAGAAA+TGG + chr4_1:425540-425559 None:intergenic 20.0%
!! TTCTTAGAACTGAAAAAATA+TGG - chr4_1:425541-425560 Msa0527770:intron 20.0%
!!! ACTAAATTTTCTTGTGTTTT+TGG - chr4_1:426099-426118 Msa0527770:intron 20.0%
!!! CTAAATTTTCTTGTGTTTTT+GGG - chr4_1:426100-426119 Msa0527770:intron 20.0%
!!! TAAATTTTCTTGTGTTTTTG+GGG - chr4_1:426101-426120 Msa0527770:intron 20.0%
!! TATTAAATTACCTATTAAGC+AGG - chr4_1:426414-426433 Msa0527770:intron 20.0%
!! AAAATATAAGTTCTATGACA+TGG - chr4_1:427077-427096 Msa0527770:intron 20.0%
!!! TGCATCTTTTATATTTTCTA+TGG - chr4_1:427389-427408 Msa0527770:CDS 20.0%
!! GACAATTTCGATTTTGAATT+CGG - chr4_1:421964-421983 Msa0527770:CDS 25.0%
!!! TGAGTTGATTCAAATTGTTA+GGG - chr4_1:421996-422015 Msa0527770:intron 25.0%
!! CAGTGGATATTTGAATTTTT+AGG - chr4_1:422278-422297 Msa0527770:intron 25.0%
!!! TGTTGTTGATTCTTTATAGT+TGG - chr4_1:422568-422587 Msa0527770:intron 25.0%
! TGATAAATACTAAGTAGCAT+AGG - chr4_1:422788-422807 Msa0527770:CDS 25.0%
!!! ATTATTTTTTTAGGTGGAAC+AGG + chr4_1:423228-423247 None:intergenic 25.0%
! TTGGTATGTAAATTATTGAC+TGG - chr4_1:424351-424370 Msa0527770:CDS 25.0%
! ATAGTTAGACTTCAAAAATG+AGG + chr4_1:424494-424513 None:intergenic 25.0%
! TAACTATATCTTCCCAAAAT+TGG - chr4_1:424507-424526 Msa0527770:CDS 25.0%
! AACTATATCTTCCCAAAATT+GGG - chr4_1:424508-424527 Msa0527770:CDS 25.0%
!! AAGTTATCATTGCCAATTTT+GGG + chr4_1:424577-424596 None:intergenic 25.0%
! ATTTCCTTAACCATGATTTA+TGG - chr4_1:425330-425349 Msa0527770:intron 25.0%
!! GGATGTTTCAATTTAGATTT+TGG - chr4_1:425644-425663 Msa0527770:intron 25.0%
! TACATCCTGCTATTATTATT+TGG + chr4_1:425670-425689 None:intergenic 25.0%
!!! AAATTGCCCATTTTAAGAAT+TGG - chr4_1:425780-425799 Msa0527770:intron 25.0%
! AAGGTTCCAATTCTTAAAAT+GGG + chr4_1:425789-425808 None:intergenic 25.0%
! AAACACATACAGAAAAAAGA+AGG + chr4_1:425808-425827 None:intergenic 25.0%
! GAGAATATACCTATATTAAG+TGG - chr4_1:426502-426521 Msa0527770:intron 25.0%
! AAGAAAAGAACTCGAAATAT+TGG - chr4_1:426691-426710 Msa0527770:intron 25.0%
! AGAAAAGAACTCGAAATATT+GGG - chr4_1:426692-426711 Msa0527770:intron 25.0%
!! TATAGTTTAACTTTGACGTA+TGG - chr4_1:427256-427275 Msa0527770:intron 25.0%
!! AAGGTCTTACTAAAAAGTTT+TGG + chr4_1:427652-427671 None:intergenic 25.0%
!!! AATCTTTTGAGAATGAACAA+TGG - chr4_1:427743-427762 Msa0527770:CDS 25.0%
AGTTAGGAGGAAATGAAAAA+CGG + chr4_1:421784-421803 None:intergenic 30.0%
!! GATTTTGAATTCGGTGAATT+TGG - chr4_1:421973-421992 Msa0527770:CDS 30.0%
!! GTGAGTTGATTCAAATTGTT+AGG - chr4_1:421995-422014 Msa0527770:intron 30.0%
TTGTGAATTTATGAAGGTTG+TGG - chr4_1:422036-422055 Msa0527770:intron 30.0%
TGTGGAATTGAAGTTGAAAA+TGG - chr4_1:422054-422073 Msa0527770:intron 30.0%
!! ATGTTTGCGCTTTAACTTTT+TGG - chr4_1:422593-422612 Msa0527770:intron 30.0%
!!! TTTTTTGAAAACTCGGTATC+CGG + chr4_1:423054-423073 None:intergenic 30.0%
TATGTCTACATCAAAAAAGC+TGG - chr4_1:423190-423209 Msa0527770:CDS 30.0%
CTGCAGATAATAGAACAAAT+AGG + chr4_1:424019-424038 None:intergenic 30.0%
TATTTCATCTATTTCCAGAG+AGG + chr4_1:424193-424212 None:intergenic 30.0%
AATGTATGATGATAGATAGC+AGG - chr4_1:424281-424300 Msa0527770:intron 30.0%
!!! GTTGTTGCTTTTTGCTTATA+TGG - chr4_1:424452-424471 Msa0527770:CDS 30.0%
! CAAGTTATCATTGCCAATTT+TGG + chr4_1:424578-424597 None:intergenic 30.0%
AATGAAAAGCCTAATGAATC+TGG - chr4_1:424611-424630 Msa0527770:CDS 30.0%
GGAATTATGCAGAAAATGAT+GGG - chr4_1:424714-424733 Msa0527770:CDS 30.0%
GCAAGATATATATGAATCAC+TGG - chr4_1:424901-424920 Msa0527770:intron 30.0%
TCAACAAGGACATTATGAAA+GGG + chr4_1:424971-424990 None:intergenic 30.0%
ATCAACAAGGACATTATGAA+AGG + chr4_1:424972-424991 None:intergenic 30.0%
! ATAATGTCCTTGTTGATGAA+AGG - chr4_1:424975-424994 Msa0527770:intron 30.0%
! TAATGTCCTTGTTGATGAAA+GGG - chr4_1:424976-424995 Msa0527770:intron 30.0%
AACTCTTGATCTGTAATTCT+GGG + chr4_1:425184-425203 None:intergenic 30.0%
!! GTTAAGGAAATGTTTTTCAG+AGG + chr4_1:425321-425340 None:intergenic 30.0%
CATACCATAAATCATGGTTA+AGG + chr4_1:425337-425356 None:intergenic 30.0%
CTTGAACATACCATAAATCA+TGG + chr4_1:425343-425362 None:intergenic 30.0%
! ATTCTTTTCCTTTCACATCT+TGG + chr4_1:425624-425643 None:intergenic 30.0%
AAGATGTGAAAGGAAAAGAA+TGG - chr4_1:425623-425642 Msa0527770:CDS 30.0%
TTTGGCCAAATAATAATAGC+AGG - chr4_1:425662-425681 Msa0527770:intron 30.0%
GAAGGTTCCAATTCTTAAAA+TGG + chr4_1:425790-425809 None:intergenic 30.0%
GCTGCAATATAAGCTAAATT+TGG - chr4_1:425832-425851 Msa0527770:intron 30.0%
!! GTTTGCTATATGAGCTAAAA+TGG + chr4_1:426376-426395 None:intergenic 30.0%
ATTCTCATAAACACCAGAAT+AGG + chr4_1:426488-426507 None:intergenic 30.0%
CCAGAATAACCACTTAATAT+AGG + chr4_1:426514-426533 None:intergenic 30.0%
CCTATATTAAGTGGTTATTC+TGG - chr4_1:426511-426530 Msa0527770:intron 30.0%
ATATTGGGTCAAAAAGTAAG+AGG - chr4_1:426707-426726 Msa0527770:intron 30.0%
TTCTGATATTTAGATTCACC+AGG + chr4_1:427056-427075 None:intergenic 30.0%
AAAATTTGCAACTCCAATAC+TGG + chr4_1:427141-427160 None:intergenic 30.0%
GAACTTACTTCTATTCATTC+AGG - chr4_1:427284-427303 Msa0527770:intron 30.0%
! TGGAAAGAAGAGTATATTTG+TGG - chr4_1:427320-427339 Msa0527770:intron 30.0%
AATGGGAAGAAAGAAAGAGA+AGG + chr4_1:421748-421767 None:intergenic 35.0%
AGGAAATGAAAAACGGTTAC+CGG + chr4_1:421777-421796 None:intergenic 35.0%
CAAAATCGAAATTGTCGTAC+CGG + chr4_1:421960-421979 None:intergenic 35.0%
AAATTGTACGGATCAAACAG+TGG - chr4_1:422261-422280 Msa0527770:intron 35.0%
ACGGTGGTTAAGATTCAAAA+CGG + chr4_1:422526-422545 None:intergenic 35.0%
AAAGGGTCAAAACGACAAAA+CGG + chr4_1:422545-422564 None:intergenic 35.0%
GCATAGGATTTCCCAAAAAA+TGG - chr4_1:422804-422823 Msa0527770:CDS 35.0%
AAACGCCAGATATTGTTTGT+AGG - chr4_1:422863-422882 Msa0527770:CDS 35.0%
TTAGGCCTACAAACAATATC+TGG + chr4_1:422871-422890 None:intergenic 35.0%
TAGATATTGTCTGTTGTGCT+AGG + chr4_1:423086-423105 None:intergenic 35.0%
! AGTTAGCTGAACATTTTCTG+TGG - chr4_1:423105-423124 Msa0527770:intron 35.0%
CTGAAAACTCACACTTAAAG+CGG + chr4_1:423156-423175 None:intergenic 35.0%
AGTTTGGAAAGAGCTTTCTT+TGG - chr4_1:423282-423301 Msa0527770:intron 35.0%
TGTAGTCACCAGTAATTGTA+GGG - chr4_1:423597-423616 Msa0527770:intron 35.0%
AAGCTCAGAGTGAAAATAGT+AGG - chr4_1:423666-423685 Msa0527770:intron 35.0%
!! TAGAGCATGAAGCTATTTCT+TGG + chr4_1:423815-423834 None:intergenic 35.0%
ATGTTCCATGCAAAAGAATC+TGG - chr4_1:423897-423916 Msa0527770:CDS 35.0%
AAGTTGTGGGTAAAGAAAAG+TGG + chr4_1:423965-423984 None:intergenic 35.0%
CCAGAGAGGTAAATCATAAA+TGG + chr4_1:424179-424198 None:intergenic 35.0%
CCATTTATGATTTACCTCTC+TGG - chr4_1:424176-424195 Msa0527770:intron 35.0%
AATCGTGCTCTTCCATATAT+AGG - chr4_1:424427-424446 Msa0527770:CDS 35.0%
AAGCAACAACCTCCTATATA+TGG + chr4_1:424442-424461 None:intergenic 35.0%
TAACTGTATCCTCCCAAAAT+TGG - chr4_1:424562-424581 Msa0527770:CDS 35.0%
! TTATCATTGCCAATTTTGGG+AGG + chr4_1:424574-424593 None:intergenic 35.0%
!! TTTGCTGTTCCAGATTCATT+AGG + chr4_1:424623-424642 None:intergenic 35.0%
TGGCTAACCAATTAAATGTG+AGG - chr4_1:424678-424697 Msa0527770:CDS 35.0%
GGCTAACCAATTAAATGTGA+GGG - chr4_1:424679-424698 Msa0527770:CDS 35.0%
GCTAACCAATTAAATGTGAG+GGG - chr4_1:424680-424699 Msa0527770:CDS 35.0%
GGGAATTATGCAGAAAATGA+TGG - chr4_1:424713-424732 Msa0527770:CDS 35.0%
! CAAACCTCACAATGTTGATT+TGG - chr4_1:424751-424770 Msa0527770:CDS 35.0%
! TCTGGTTTGATTTCTCTAGA+AGG + chr4_1:424782-424801 None:intergenic 35.0%
CAATTTCATCGTGAGTCAAA+TGG - chr4_1:424845-424864 Msa0527770:CDS 35.0%
TTATGAAAGGGATTTGGCAA+AGG + chr4_1:424959-424978 None:intergenic 35.0%
AGGACATTATGAAAGGGATT+TGG + chr4_1:424965-424984 None:intergenic 35.0%
TTTGTTCCCTTTCATCAACA+AGG + chr4_1:424985-425004 None:intergenic 35.0%
! ATCTTTTACCTAAACCTCCT+AGG - chr4_1:425047-425066 Msa0527770:intron 35.0%
CAACTCTTGATCTGTAATTC+TGG + chr4_1:425185-425204 None:intergenic 35.0%
TCAAGAGTTGCAGCAAATAT+CGG - chr4_1:425195-425214 Msa0527770:intron 35.0%
! CTAAGCATCTTTTCAAAGAG+TGG + chr4_1:425385-425404 None:intergenic 35.0%
! ATTACTTCAGCACATGCTTT+TGG + chr4_1:425445-425464 None:intergenic 35.0%
GAAAAAATATGGCATTGTGC+AGG - chr4_1:425552-425571 Msa0527770:intron 35.0%
!! AGCAGGATGTATGTTTTAGA+AGG - chr4_1:425679-425698 Msa0527770:intron 35.0%
!!! GCAGGATGTATGTTTTAGAA+GGG - chr4_1:425680-425699 Msa0527770:intron 35.0%
!!! CAGGATGTATGTTTTAGAAG+GGG - chr4_1:425681-425700 Msa0527770:intron 35.0%
AGTTGCATAGACTGAATACA+GGG + chr4_1:425712-425731 None:intergenic 35.0%
! ATTTGTTAGCATATTGAGCC+AGG + chr4_1:425923-425942 None:intergenic 35.0%
!!! TTTTCTTGTGTTTTTGGGGA+TGG - chr4_1:426105-426124 Msa0527770:intron 35.0%
!!! TTTCTTGTGTTTTTGGGGAT+GGG - chr4_1:426106-426125 Msa0527770:intron 35.0%
AACAAATTCTGCTTCAGTAC+AGG - chr4_1:426344-426363 Msa0527770:intron 35.0%
GGAAAAGTTTCCTGCTTAAT+AGG + chr4_1:426427-426446 None:intergenic 35.0%
TCACTTGAATGAGAACCATT+GGG + chr4_1:426460-426479 None:intergenic 35.0%
TTCACTTGAATGAGAACCAT+TGG + chr4_1:426461-426480 None:intergenic 35.0%
TCAAGTGAAACTTCCTATTC+TGG - chr4_1:426472-426491 Msa0527770:intron 35.0%
ATACTCTTCTTTCCAAACAC+AGG + chr4_1:427315-427334 None:intergenic 35.0%
ATATTTGTGGTACGATCTAC+TGG - chr4_1:427333-427352 Msa0527770:intron 35.0%
TATTTGTGGTACGATCTACT+GGG - chr4_1:427334-427353 Msa0527770:intron 35.0%
AGTGTGATAGTTGCCAAAAA+TGG - chr4_1:427521-427540 Msa0527770:intron 35.0%
TCCCAATGAATTGAATCCAA+GGG - chr4_1:427712-427731 Msa0527770:CDS 35.0%
TCCCTTGGATTCAATTCATT+GGG + chr4_1:427716-427735 None:intergenic 35.0%
TTCCCTTGGATTCAATTCAT+TGG + chr4_1:427717-427736 None:intergenic 35.0%
AAAAGATTATCCAGTTCCCT+TGG + chr4_1:427731-427750 None:intergenic 35.0%
! GTAACTATAAAAGCATAGCG+TGG + chr4_1:427799-427818 None:intergenic 35.0%
GAAGAAAGAAAGAGAAGGTG+AGG + chr4_1:421743-421762 None:intergenic 40.0%
! CTTTCTTCCCATTTTCTCTC+CGG - chr4_1:421755-421774 Msa0527770:CDS 40.0%
AGTTGGTTATGGAGATAAGG+CGG + chr4_1:421892-421911 None:intergenic 40.0%
CACAGTTGGTTATGGAGATA+AGG + chr4_1:421895-421914 None:intergenic 40.0%
TAACGTCACCAGAAGTTTGA+GGG + chr4_1:421928-421947 None:intergenic 40.0%
TGTTGCATGAACGTTGTTTG+TGG - chr4_1:422085-422104 Msa0527770:intron 40.0%
AAAGGTTGGATTCTTCGATC+CGG - chr4_1:422133-422152 Msa0527770:intron 40.0%
ACATAGATCGGCAAATTCAC+CGG + chr4_1:422155-422174 None:intergenic 40.0%
GTGGTTAAGATTCAAAACGG+TGG + chr4_1:422523-422542 None:intergenic 40.0%
ATGTATGTAGTTGCGGTTGT+TGG - chr4_1:422632-422651 Msa0527770:intron 40.0%
!!! CATAGGAGTGTGCTTTTTCA+AGG - chr4_1:422921-422940 Msa0527770:CDS 40.0%
ATTGTCCATAAGCAAAGCTC+TGG + chr4_1:422993-423012 None:intergenic 40.0%
AGAGCTTTGCTTATGGACAA+TGG - chr4_1:422992-423011 Msa0527770:CDS 40.0%
GAGCTTTGCTTATGGACAAT+GGG - chr4_1:422993-423012 Msa0527770:CDS 40.0%
TATGGACAATGGGATTCGAT+TGG - chr4_1:423003-423022 Msa0527770:CDS 40.0%
ATGAACCGTCAGATCATGAT+CGG + chr4_1:423489-423508 None:intergenic 40.0%
GTGTAGTCACCAGTAATTGT+AGG - chr4_1:423596-423615 Msa0527770:intron 40.0%
CCAGTAATTGTAGGGAATCT+CGG - chr4_1:423605-423624 Msa0527770:intron 40.0%
TCATGCTCTAACTCTTACTC+TGG - chr4_1:423825-423844 Msa0527770:CDS 40.0%
TCCATGCAAAAGAATCTGGT+TGG - chr4_1:423901-423920 Msa0527770:CDS 40.0%
! TCCAACCAGATTCTTTTGCA+TGG + chr4_1:423905-423924 None:intergenic 40.0%
TTGAAGCAACACATCCACAA+TGG + chr4_1:424047-424066 None:intergenic 40.0%
CAGCTTGAAATACTTGACAC+TGG - chr4_1:424072-424091 Msa0527770:CDS 40.0%
CTTGAAATACTTGACACTGG+TGG - chr4_1:424075-424094 Msa0527770:CDS 40.0%
ATTACCTGTGCAAGTACTTC+AGG - chr4_1:424108-424127 Msa0527770:CDS 40.0%
GCATACCCCTCACATTTAAT+TGG + chr4_1:424688-424707 None:intergenic 40.0%
! ATGCAGAAAATGATGGGATG+AGG - chr4_1:424720-424739 Msa0527770:CDS 40.0%
! AAAATGATGGGATGAGGTAC+TGG - chr4_1:424726-424745 Msa0527770:CDS 40.0%
CCATCCAAATCAACATTGTG+AGG + chr4_1:424758-424777 None:intergenic 40.0%
!! CCTCACAATGTTGATTTGGA+TGG - chr4_1:424755-424774 Msa0527770:CDS 40.0%
TTACCCTCTGTTGGAGAATT+TGG - chr4_1:424806-424825 Msa0527770:CDS 40.0%
CTTCCAAATTCTCCAACAGA+GGG + chr4_1:424812-424831 None:intergenic 40.0%
GTGAGTCAAATGGTTCATCT+AGG - chr4_1:424855-424874 Msa0527770:CDS 40.0%
! TCAAATGGTTCATCTAGGAC+TGG - chr4_1:424860-424879 Msa0527770:CDS 40.0%
AATGTCACCTCCACTTCTAT+TGG - chr4_1:425009-425028 Msa0527770:intron 40.0%
TTTCCCAGATACGTATAGCA+AGG - chr4_1:425110-425129 Msa0527770:intron 40.0%
CAAGAGTTGCAGCAAATATC+GGG - chr4_1:425196-425215 Msa0527770:intron 40.0%
! CTTTTCAAAGAGTGGCACAA+TGG + chr4_1:425377-425396 None:intergenic 40.0%
TTCACATCTTGGATACGCAA+AGG + chr4_1:425613-425632 None:intergenic 40.0%
TTGCGTATCCAAGATGTGAA+AGG - chr4_1:425613-425632 Msa0527770:CDS 40.0%
TTGCATAGACTGAATACAGG+GGG + chr4_1:425710-425729 None:intergenic 40.0%
GTTGCATAGACTGAATACAG+GGG + chr4_1:425711-425730 None:intergenic 40.0%
CAGTTGCATAGACTGAATAC+AGG + chr4_1:425713-425732 None:intergenic 40.0%
TCAGAATCTTTGCAAGTTCC+TGG - chr4_1:425902-425921 Msa0527770:intron 40.0%
TGCAGTAACATTTAGCCGTA+TGG - chr4_1:426284-426303 Msa0527770:intron 40.0%
CCATTATAAGTTTCCCCTCA+GGG + chr4_1:426311-426330 None:intergenic 40.0%
CCTGAGGGGAAACTTATAAT+GGG - chr4_1:426309-426328 Msa0527770:intron 40.0%
CTGAGGGGAAACTTATAATG+GGG - chr4_1:426310-426329 Msa0527770:intron 40.0%
! GGAAACTTATAATGGGGTTC+AGG - chr4_1:426316-426335 Msa0527770:intron 40.0%
! ACTTATAATGGGGTTCAGGA+AGG - chr4_1:426320-426339 Msa0527770:intron 40.0%
TTTCCGTCTAATATGCCCAA+TGG - chr4_1:426442-426461 Msa0527770:intron 40.0%
GAACCATTGGGCATATTAGA+CGG + chr4_1:426448-426467 None:intergenic 40.0%
!!! AACCCTTTTGAGACTGAAGA+AGG + chr4_1:426537-426556 None:intergenic 40.0%
! ACTTTCTAGAGAGCGCATTT+AGG + chr4_1:426573-426592 None:intergenic 40.0%
! TAAATGCGCTCTCTAGAAAG+TGG - chr4_1:426572-426591 Msa0527770:intron 40.0%
TCTAGAAAGTGGAACTCAGT+TGG - chr4_1:426583-426602 Msa0527770:intron 40.0%
ATGTAGAAATGCCTGAAAGC+AGG - chr4_1:426626-426645 Msa0527770:intron 40.0%
! ACATCTCTTTTCCTGCTTTC+AGG + chr4_1:426640-426659 None:intergenic 40.0%
ACTGGAGCTGAAACTTACTT+GGG - chr4_1:426753-426772 Msa0527770:intron 40.0%
ACAACACTTGGCTTAACTTC+TGG + chr4_1:426808-426827 None:intergenic 40.0%
TACATGCATGCATGATAGAG+AGG - chr4_1:426920-426939 Msa0527770:intron 40.0%
ACATGCATGCATGATAGAGA+GGG - chr4_1:426921-426940 Msa0527770:intron 40.0%
ATAGAGAGGGGCGAAAATTA+TGG - chr4_1:426934-426953 Msa0527770:intron 40.0%
! TATCCAAAGCTTTTCAGTCC+TGG - chr4_1:427035-427054 Msa0527770:intron 40.0%
AAGTTAATCACTGCTACGTG+TGG + chr4_1:427194-427213 None:intergenic 40.0%
TTGGAGTATGATTGTACCAC+AGG - chr4_1:427479-427498 Msa0527770:intron 40.0%
GTGATAGTTGCCAAAAATGG+CGG - chr4_1:427524-427543 Msa0527770:intron 40.0%
ATGTACTTATTCCCCCTAAG+TGG - chr4_1:427560-427579 Msa0527770:CDS 40.0%
! GACGTGTATGGAGAACTTTT+GGG - chr4_1:427582-427601 Msa0527770:CDS 40.0%
!!! AGAACTTTTGGGATCAAAGC+AGG - chr4_1:427593-427612 Msa0527770:CDS 40.0%
CTCCCAATGAATTGAATCCA+AGG - chr4_1:427711-427730 Msa0527770:CDS 40.0%
TGAATTGAATCCAAGGGAAC+TGG - chr4_1:427718-427737 Msa0527770:CDS 40.0%
ACGGTTACCGGAGAGAAAAT+GGG + chr4_1:421765-421784 None:intergenic 45.0%
AACGGTTACCGGAGAGAAAA+TGG + chr4_1:421766-421785 None:intergenic 45.0%
TGAACGGAGGAGAAGAAGTT+AGG + chr4_1:421800-421819 None:intergenic 45.0%
TTTGCATTTGTGTTGCAGCG+TGG + chr4_1:421834-421853 None:intergenic 45.0%
TCTCCATAACCAACTGTGAC+CGG - chr4_1:421897-421916 Msa0527770:CDS 45.0%
CAGAAGTTTGAGGGAAGTTC+CGG + chr4_1:421919-421938 None:intergenic 45.0%
CTAACGTCACCAGAAGTTTG+AGG + chr4_1:421929-421948 None:intergenic 45.0%
!! GGTGACGTTAGCTTTGATTC+CGG - chr4_1:421938-421957 Msa0527770:CDS 45.0%
GCCGATCTATGTGATAAGTG+CGG - chr4_1:422163-422182 Msa0527770:CDS 45.0%
CCCGCACTTATCACATAGAT+CGG + chr4_1:422167-422186 None:intergenic 45.0%
CCGATCTATGTGATAAGTGC+GGG - chr4_1:422164-422183 Msa0527770:CDS 45.0%
! TGCGGTTGTTGGTAAGATTG+TGG - chr4_1:422643-422662 Msa0527770:intron 45.0%
! TGTTGGTAAGATTGTGGCTG+CGG - chr4_1:422649-422668 Msa0527770:CDS 45.0%
!! ACCACTAGCTCTGTTGAGTT+AGG + chr4_1:422889-422908 None:intergenic 45.0%
!! ATGGACTAGCCCATCGAAAT+TGG + chr4_1:422970-422989 None:intergenic 45.0%
TCCATCCAGAGCTTTGCTTA+TGG - chr4_1:422985-423004 Msa0527770:CDS 45.0%
!! TCCATAAGCAAAGCTCTGGA+TGG + chr4_1:422989-423008 None:intergenic 45.0%
ATTGGACCCCTCAGATTAGT+CGG - chr4_1:423021-423040 Msa0527770:CDS 45.0%
CTAAGACCGACTAATCTGAG+GGG + chr4_1:423030-423049 None:intergenic 45.0%
CCTAAGACCGACTAATCTGA+GGG + chr4_1:423031-423050 None:intergenic 45.0%
! ACATTTTCTGTGGTTACCCC+AGG - chr4_1:423115-423134 Msa0527770:intron 45.0%
ACCATCCGATCATGATCTGA+CGG - chr4_1:423481-423500 Msa0527770:intron 45.0%
CCGAGATTCCCTACAATTAC+TGG + chr4_1:423608-423627 None:intergenic 45.0%
TCACAAGACTCGTGGGTATA+AGG + chr4_1:423632-423651 None:intergenic 45.0%
AACCATGTCACAAGACTCGT+GGG + chr4_1:423639-423658 None:intergenic 45.0%
AAACCATGTCACAAGACTCG+TGG + chr4_1:423640-423659 None:intergenic 45.0%
! TGGAGAGAGTGTACTTCATG+TGG - chr4_1:423921-423940 Msa0527770:intron 45.0%
AGAGTGTACTTCATGTGGCA+AGG - chr4_1:423926-423945 Msa0527770:intron 45.0%
! AAGTCCTGAAGTACTTGCAC+AGG + chr4_1:424115-424134 None:intergenic 45.0%
ACAAGGTGAAGTGAGCTTAC+AGG + chr4_1:424141-424160 None:intergenic 45.0%
CGTGCTCTTCCATATATAGG+AGG - chr4_1:424430-424449 Msa0527770:CDS 45.0%
! AATGTGAGGGGTATGCAAGT+TGG - chr4_1:424692-424711 Msa0527770:CDS 45.0%
! ATGTGAGGGGTATGCAAGTT+GGG - chr4_1:424693-424712 Msa0527770:CDS 45.0%
CCAACAGAGGGTAAAACTTC+TGG + chr4_1:424800-424819 None:intergenic 45.0%
! CCAGAAGTTTTACCCTCTGT+TGG - chr4_1:424797-424816 Msa0527770:CDS 45.0%
GCTTCCAAATTCTCCAACAG+AGG + chr4_1:424813-424832 None:intergenic 45.0%
ATTTGGCAAAGGAGCGGTAA+GGG + chr4_1:424948-424967 None:intergenic 45.0%
AAAGGGATTTGGCAAAGGAG+CGG + chr4_1:424954-424973 None:intergenic 45.0%
GATCTAGACGCCAATAGAAG+TGG + chr4_1:425022-425041 None:intergenic 45.0%
TCTAAGCCTGGAGATAGAGT+TGG + chr4_1:425073-425092 None:intergenic 45.0%
ACTCTATCTCCAGGCTTAGA+AGG - chr4_1:425073-425092 Msa0527770:intron 45.0%
CTTAGAAGGAAACACAGGCA+TGG - chr4_1:425087-425106 Msa0527770:intron 45.0%
! AGGCCTTGCTATACGTATCT+GGG + chr4_1:425116-425135 None:intergenic 45.0%
ATCAGTTGCTTCCGCGATAT+TGG - chr4_1:425158-425177 Msa0527770:intron 45.0%
GTAATTCTGGGCCAATATCG+CGG + chr4_1:425172-425191 None:intergenic 45.0%
TTCAAAGAGTGGCACAATGG+TGG + chr4_1:425374-425393 None:intergenic 45.0%
ATGCTTAGTGCAAGTGATGC+TGG - chr4_1:425397-425416 Msa0527770:CDS 45.0%
CATCTTGGATACGCAAAGGA+AGG + chr4_1:425609-425628 None:intergenic 45.0%
CCCTGAGGGGAAACTTATAA+TGG - chr4_1:426308-426327 Msa0527770:intron 45.0%
CCCATTATAAGTTTCCCCTC+AGG + chr4_1:426312-426331 None:intergenic 45.0%
TGGCCTTCTTCAGTCTCAAA+AGG - chr4_1:426531-426550 Msa0527770:intron 45.0%
GGCCTTCTTCAGTCTCAAAA+GGG - chr4_1:426532-426551 Msa0527770:intron 45.0%
! TCTAGAGAGCGCATTTAGGT+GGG + chr4_1:426569-426588 None:intergenic 45.0%
! TTCTAGAGAGCGCATTTAGG+TGG + chr4_1:426570-426589 None:intergenic 45.0%
!! GAGGTTGCTTATTGATAGCG+AGG - chr4_1:426726-426745 Msa0527770:intron 45.0%
!! TATTGATAGCGAGGATGCAC+TGG - chr4_1:426735-426754 Msa0527770:intron 45.0%
CACTGGAGCTGAAACTTACT+TGG - chr4_1:426752-426771 Msa0527770:intron 45.0%
GCTGAAACTTACTTGGGAAG+AGG - chr4_1:426759-426778 Msa0527770:intron 45.0%
ACACTTGGCTTAACTTCTGG+AGG + chr4_1:426805-426824 None:intergenic 45.0%
TCCTCGATCATGACAACACT+TGG + chr4_1:426820-426839 None:intergenic 45.0%
CATGCATGCATGATAGAGAG+GGG - chr4_1:426922-426941 Msa0527770:intron 45.0%
TCACCAGGACTGAAAAGCTT+TGG + chr4_1:427041-427060 None:intergenic 45.0%
GACATGGACTTTACCTGCAT+TGG - chr4_1:427093-427112 Msa0527770:intron 45.0%
! GCGTATTGATAGACCAATGC+AGG + chr4_1:427109-427128 None:intergenic 45.0%
ACGCATGCACTAACCAGTAT+TGG - chr4_1:427125-427144 Msa0527770:intron 45.0%
CTCTTCTTTCCAAACACAGG+AGG + chr4_1:427312-427331 None:intergenic 45.0%
! CCAAAAATGGCGGAAGTTAC+CGG - chr4_1:427534-427553 Msa0527770:intron 45.0%
GGGGGAATAAGTACATCAAC+CGG + chr4_1:427556-427575 None:intergenic 45.0%
TCTCCATACACGTCCACTTA+GGG + chr4_1:427576-427595 None:intergenic 45.0%
TTCTCCATACACGTCCACTT+AGG + chr4_1:427577-427596 None:intergenic 45.0%
! GGACGTGTATGGAGAACTTT+TGG - chr4_1:427581-427600 Msa0527770:CDS 45.0%
GATCAAAGCAGGTGAGTAGA+AGG - chr4_1:427604-427623 Msa0527770:CDS 45.0%
ACAGCATCGCATAAGCACAA+AGG + chr4_1:427671-427690 None:intergenic 45.0%
!!! AATTTATGATTTTTTTTTTT+GGG - chr4_1:424252-424271 Msa0527770:intron 5.0%
!! ATAAAAATAACTATAATAAT+GGG + chr4_1:425501-425520 None:intergenic 5.0%
!! AATAAAAATAACTATAATAA+TGG + chr4_1:425502-425521 None:intergenic 5.0%
ACGGAGGAGAAGAAGTTAGG+AGG + chr4_1:421797-421816 None:intergenic 50.0%
CGTGGAGGAGAGAGTTTGAA+CGG + chr4_1:421816-421835 None:intergenic 50.0%
TTATGGAGATAAGGCGGTGG+TGG + chr4_1:421886-421905 None:intergenic 50.0%
TGGTTATGGAGATAAGGCGG+TGG + chr4_1:421889-421908 None:intergenic 50.0%
GTTCCGGTCACAGTTGGTTA+TGG + chr4_1:421903-421922 None:intergenic 50.0%
CGGAACTTCCCTCAAACTTC+TGG - chr4_1:421917-421936 Msa0527770:CDS 50.0%
! GTGGAACCTCTACGTCGATT+CGG - chr4_1:422104-422123 Msa0527770:intron 50.0%
GGGTCAAAACGACAAAACGG+TGG + chr4_1:422542-422561 None:intergenic 50.0%
GCCTAACTCAACAGAGCTAG+TGG - chr4_1:422885-422904 Msa0527770:CDS 50.0%
! GTGGTGATGACGTGAGACAT+AGG - chr4_1:422904-422923 Msa0527770:CDS 50.0%
AGCCCATCGAAATTGGCACT+GGG + chr4_1:422963-422982 None:intergenic 50.0%
TAGCCCATCGAAATTGGCAC+TGG + chr4_1:422964-422983 None:intergenic 50.0%
! CCCTCAGATTAGTCGGTCTT+AGG - chr4_1:423028-423047 Msa0527770:CDS 50.0%
GCCTAAGACCGACTAATCTG+AGG + chr4_1:423032-423051 None:intergenic 50.0%
! CAGATTAGTCGGTCTTAGGC+CGG - chr4_1:423032-423051 Msa0527770:CDS 50.0%
TTTCTGTGGTTACCCCAGGT+CGG - chr4_1:423119-423138 Msa0527770:intron 50.0%
ACACTTAAAGCGGAGATCCC+AGG + chr4_1:423146-423165 None:intergenic 50.0%
TGCATGCAATCAGTGACTGC+AGG + chr4_1:423444-423463 None:intergenic 50.0%
CATGCATTCACAGTGACTGC+AGG - chr4_1:423458-423477 Msa0527770:intron 50.0%
ACCGTCAGATCATGATCGGA+TGG + chr4_1:423485-423504 None:intergenic 50.0%
TGAACAGTCCGATCTCGATC+AGG - chr4_1:423563-423582 Msa0527770:intron 50.0%
! TACCCACGAGTCTTGTGACA+TGG - chr4_1:423634-423653 Msa0527770:intron 50.0%
TATCTGCAGCGTCTCCATTG+TGG - chr4_1:424030-424049 Msa0527770:intron 50.0%
TTCCCAGCAGTGCATATCTC+TGG - chr4_1:424658-424677 Msa0527770:CDS 50.0%
AGCCAGAGATATGCACTGCT+GGG + chr4_1:424663-424682 None:intergenic 50.0%
TAGCCAGAGATATGCACTGC+TGG + chr4_1:424664-424683 None:intergenic 50.0%
GATTTGGCAAAGGAGCGGTA+AGG + chr4_1:424949-424968 None:intergenic 50.0%
CTAGACGCCAATAGAAGTGG+AGG + chr4_1:425019-425038 None:intergenic 50.0%
! AGAGTTGGCCTAGGAGGTTT+AGG + chr4_1:425058-425077 None:intergenic 50.0%
CCTGTGTTTCCTTCTAAGCC+TGG + chr4_1:425085-425104 None:intergenic 50.0%
CCAGGCTTAGAAGGAAACAC+AGG - chr4_1:425082-425101 Msa0527770:intron 50.0%
! GAGGCCTTGCTATACGTATC+TGG + chr4_1:425117-425136 None:intergenic 50.0%
GCAAGTGATGCTGGTCGAAT+TGG - chr4_1:425406-425425 Msa0527770:CDS 50.0%
!! CCTCAGGTTGAGAGATAGGA+GGG + chr4_1:425585-425604 None:intergenic 50.0%
CCTCCTATCTCTCAACCTGA+GGG - chr4_1:425583-425602 Msa0527770:CDS 50.0%
CAGTCTATGCAACTGCAAGC+TGG - chr4_1:425718-425737 Msa0527770:intron 50.0%
ATTTAGCCGTATGGACCCTG+AGG - chr4_1:426293-426312 Msa0527770:intron 50.0%
TTTAGCCGTATGGACCCTGA+GGG - chr4_1:426294-426313 Msa0527770:intron 50.0%
!! GAACTCAGTTGGTGCTGACA+TGG - chr4_1:426594-426613 Msa0527770:intron 50.0%
!! CAGTTGGTGCTGACATGGAT+TGG - chr4_1:426599-426618 Msa0527770:intron 50.0%
GTTGTCTTTACCACCTGTGC+TGG - chr4_1:426660-426679 Msa0527770:intron 50.0%
ACTTACTTGGGAAGAGGCTC+AGG - chr4_1:426765-426784 Msa0527770:intron 50.0%
! CTTGGCTTAACTTCTGGAGG+TGG + chr4_1:426802-426821 None:intergenic 50.0%
! GCCAAGTGTTGTCATGATCG+AGG - chr4_1:426816-426835 Msa0527770:intron 50.0%
ATTCAGGAGCCTCCTGTGTT+TGG - chr4_1:427300-427319 Msa0527770:intron 50.0%
ACCACAGGATAAGTGAGCAG+TGG - chr4_1:427494-427513 Msa0527770:intron 50.0%
TCCACTGCTCACTTATCCTG+TGG + chr4_1:427498-427517 None:intergenic 50.0%
!! CCGGTAACTTCCGCCATTTT+TGG + chr4_1:427537-427556 None:intergenic 50.0%
TCCATACACGTCCACTTAGG+GGG + chr4_1:427574-427593 None:intergenic 50.0%
CTCCATACACGTCCACTTAG+GGG + chr4_1:427575-427594 None:intergenic 50.0%
GGAGGAGAGAGTTTGAACGG+AGG + chr4_1:421813-421832 None:intergenic 55.0%
GCATTTGTGTTGCAGCGTGG+AGG + chr4_1:421831-421850 None:intergenic 55.0%
AGGGAAGTTCCGGTCACAGT+TGG + chr4_1:421909-421928 None:intergenic 55.0%
!! GAACCTCTACGTCGATTCGG+TGG - chr4_1:422107-422126 Msa0527770:intron 55.0%
TCCCCCAGTGCCAATTTCGA+TGG - chr4_1:422957-422976 Msa0527770:CDS 55.0%
! CCCATCGAAATTGGCACTGG+GGG + chr4_1:422961-422980 None:intergenic 55.0%
CCCCCAGTGCCAATTTCGAT+GGG - chr4_1:422958-422977 Msa0527770:CDS 55.0%
GCCCATCGAAATTGGCACTG+GGG + chr4_1:422962-422981 None:intergenic 55.0%
CGTGACTGCCTGATCGAGAT+CGG + chr4_1:423574-423593 None:intergenic 55.0%
! GGAGATAGAGTTGGCCTAGG+AGG + chr4_1:425064-425083 None:intergenic 55.0%
! CCTGGAGATAGAGTTGGCCT+AGG + chr4_1:425067-425086 None:intergenic 55.0%
CCTAGGCCAACTCTATCTCC+AGG - chr4_1:425064-425083 Msa0527770:intron 55.0%
CTGATTCCTTCCCCGTCCTT+CGG + chr4_1:425143-425162 None:intergenic 55.0%
TGCTGGTCGAATTGGTCGCT+TGG - chr4_1:425414-425433 Msa0527770:CDS 55.0%
CCCTCCTATCTCTCAACCTG+AGG - chr4_1:425582-425601 Msa0527770:CDS 55.0%
!! CCCTCAGGTTGAGAGATAGG+AGG + chr4_1:425586-425605 None:intergenic 55.0%
!! AGGCCCTCAGGTTGAGAGAT+AGG + chr4_1:425589-425608 None:intergenic 55.0%
ATACGCAAAGGAAGGCCCTC+AGG + chr4_1:425601-425620 None:intergenic 55.0%
CAACTGCAAGCTGGCGATAC+TGG - chr4_1:425727-425746 Msa0527770:intron 55.0%
TTAGCCGTATGGACCCTGAG+GGG - chr4_1:426295-426314 Msa0527770:intron 55.0%
GTTTCCCCTCAGGGTCCATA+CGG + chr4_1:426302-426321 None:intergenic 55.0%
TCCCCCTAAGTGGACGTGTA+TGG - chr4_1:427570-427589 Msa0527770:CDS 55.0%
GCTTATGCGATGCTGTCAGC+AGG - chr4_1:427675-427694 Msa0527770:CDS 55.0%
!! AGATAAGGCGGTGGTGGTGG+CGG + chr4_1:421880-421899 None:intergenic 60.0%
! TGGAGATAAGGCGGTGGTGG+TGG + chr4_1:421883-421902 None:intergenic 60.0%
!! CCTCTACGTCGATTCGGTGG+CGG - chr4_1:422110-422129 Msa0527770:intron 60.0%
!! ACGTCGATTCGGTGGCGGAA+AGG - chr4_1:422115-422134 Msa0527770:intron 60.0%
!! CGATTCGGTGGCGGAAAGGT+TGG - chr4_1:422119-422138 Msa0527770:intron 60.0%
ATAGCAAGGCCTCCTGCCGA+AGG - chr4_1:425124-425143 Msa0527770:intron 60.0%
! GCGGCGAGTTGCGGTGGTTT+TGG + chr4_1:421858-421877 None:intergenic 65.0%
CCGCCACCGAATCGACGTAG+AGG + chr4_1:422113-422132 None:intergenic 65.0%
TGGTTACCCCAGGTCGGACC+TGG - chr4_1:423125-423144 Msa0527770:intron 65.0%
GGTTACCCCAGGTCGGACCT+GGG - chr4_1:423126-423145 Msa0527770:intron 65.0%
GAGATCCCAGGTCCGACCTG+GGG + chr4_1:423134-423153 None:intergenic 65.0%
GGAGATCCCAGGTCCGACCT+GGG + chr4_1:423135-423154 None:intergenic 65.0%
CAAGGCCTCCTGCCGAAGGA+CGG - chr4_1:425128-425147 Msa0527770:intron 65.0%
AAGGCCTCCTGCCGAAGGAC+GGG - chr4_1:425129-425148 Msa0527770:intron 65.0%
TTCCTTCCCCGTCCTTCGGC+AGG + chr4_1:425139-425158 None:intergenic 65.0%
!! TAAGGCGGTGGTGGTGGCGG+CGG + chr4_1:421877-421896 None:intergenic 70.0%
CGGAGATCCCAGGTCCGACC+TGG + chr4_1:423136-423155 None:intergenic 70.0%
AGGCCTCCTGCCGAAGGACG+GGG - chr4_1:425130-425149 Msa0527770:intron 70.0%
CTTCCCCGTCCTTCGGCAGG+AGG + chr4_1:425136-425155 None:intergenic 70.0%
CTCCTGCCGAAGGACGGGGA+AGG - chr4_1:425134-425153 Msa0527770:intron 70.0%
!! GTGGTGGCGGCGGCGAGTTG+CGG + chr4_1:421867-421886 None:intergenic 75.0%
! GTGGCGGCGGCGAGTTGCGG+TGG + chr4_1:421864-421883 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 421689 427820 421689 ID=Msa0527770;Name=Msa0527770
chr4_1 mRNA 421689 427820 421689 ID=Msa0527770-mRNA-1;Parent=Msa0527770;Name=Msa0527770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.90|0.91|1|1|1|12|27|731
chr4_1 exon 421689 421812 421689 ID=Msa0527770-mRNA-1:exon:60;Parent=Msa0527770-mRNA-1
chr4_1 exon 421895 422008 421895 ID=Msa0527770-mRNA-1:exon:59;Parent=Msa0527770-mRNA-1
chr4_1 exon 422154 422203 422154 ID=Msa0527770-mRNA-1:exon:58;Parent=Msa0527770-mRNA-1
chr4_1 exon 422648 423073 422648 ID=Msa0527770-mRNA-1:exon:57;Parent=Msa0527770-mRNA-1
chr4_1 exon 423144 423220 423144 ID=Msa0527770-mRNA-1:exon:56;Parent=Msa0527770-mRNA-1
chr4_1 exon 423761 423935 423761 ID=Msa0527770-mRNA-1:exon:55;Parent=Msa0527770-mRNA-1
chr4_1 exon 424050 424146 424050 ID=Msa0527770-mRNA-1:exon:54;Parent=Msa0527770-mRNA-1
chr4_1 exon 424288 424907 424288 ID=Msa0527770-mRNA-1:exon:53;Parent=Msa0527770-mRNA-1
chr4_1 exon 425369 425470 425369 ID=Msa0527770-mRNA-1:exon:52;Parent=Msa0527770-mRNA-1
chr4_1 exon 425562 425643 425562 ID=Msa0527770-mRNA-1:exon:51;Parent=Msa0527770-mRNA-1
chr4_1 exon 427373 427457 427373 ID=Msa0527770-mRNA-1:exon:50;Parent=Msa0527770-mRNA-1
chr4_1 exon 427550 427820 427550 ID=Msa0527770-mRNA-1:exon:49;Parent=Msa0527770-mRNA-1
chr4_1 CDS 427550 427820 427550 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 427373 427457 427373 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 425562 425643 425562 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 425369 425470 425369 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 424288 424907 424288 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 424050 424146 424050 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 423761 423935 423761 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 423144 423220 423144 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 422648 423073 422648 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 422154 422203 422154 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 421895 422008 421895 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 CDS 421716 421812 421716 ID=Msa0527770-mRNA-1:cds;Parent=Msa0527770-mRNA-1
chr4_1 three_prime_UTR 421689 421715 421689 ID=Msa0527770-mRNA-1:three_prime_utr;Parent=Msa0527770-mRNA-1
Gene Sequence

>Msa0527770

TTTTCTTCTTATTCTGCATGCACACGCTTTCTTATTTTTTCTCTCTTAATTCCTCACCTTCTCTTTCTTTCTTCCCATTTTCTCTCCGGTAACCGTTTTTCATTTCCTCCTAACTTCTTCTCCTCCGTTCAAACTCTCTCCTCCACGCTGCAACACAAATGCAAATCCAAAACCACCGCAACTCGCCGCCGCCACCACCACCGCCTTATCTCCATAACCAACTGTGACCGGAACTTCCCTCAAACTTCTGGTGACGTTAGCTTTGATTCCGGTTGTGGAATTGAAGTTGAAAATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGGTATTTCTCTATTTCTTGCTTTAAATTAA
Protein sequence

>Msa0527770

FSSYSACTRFLIFSLLIPHLLFLSSHFLSGNRFSFPPNFFSSVQTLSSTLQHKCKSKTTATRRRHHHRLISITNCDRNFPQTSGDVSFDSGCGIEVENGVKVLHERCLWNLYVDSVAESSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNGISLFLALN*