AlfalfaGEDB | Msa0538190

M. sativa cultivar zhongmu-4 / Msa0538190

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538190	XP_003605289.1	98.113	901	16	1	1	901	1	900	0.0	1833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538190	sp\|Q6Z3U3\|Y7797_ORYSJ	49.946	933	395	22	4	885	15	926	0.0	813

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538190	G7JIB0	98.113	901	16	1	1	901	1	900	0.0	1833

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TFs/TRs:

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Gene ID	Type	Classification
Msa0538190	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030700	Msa0538190	0.835446	1.670539e-56	-8.615850e-47
Msa0078120	Msa0538190	0.817335	3.479062e-52	-8.615850e-47
Msa0189710	Msa0538190	0.847417	1.172026e-59	-8.615850e-47
Msa0232020	Msa0538190	0.838512	2.751303e-57	-8.615850e-47
Msa0232090	Msa0538190	0.853623	2.113833e-61	-8.615850e-47
Msa0287780	Msa0538190	0.810782	9.714402e-51	-8.615850e-47
Msa0300840	Msa0538190	0.802230	6.191620e-49	-8.615850e-47
Msa0310090	Msa0538190	0.846652	1.898254e-59	-8.615850e-47
Msa0338340	Msa0538190	0.801353	9.370416e-49	-8.615850e-47
Msa0403470	Msa0538190	-0.815064	1.119517e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538190	MtrunA17_Chr4g0012861	98.113	901	16	1	1	901	1	900	0.0	1833
Msa0538190	MtrunA17_Chr3g0107701	48.115	902	416	12	19	887	16	898	0.0	793
Msa0538190	MtrunA17_Chr5g0432721	43.426	829	403	12	1	815	1	777	0.0	612
Msa0538190	MtrunA17_Chr2g0281191	51.706	586	217	13	270	839	308	843	5.04e-180	543
Msa0538190	MtrunA17_Chr2g0281191	43.411	129	56	2	4	132	29	140	1.50e-26	117
Msa0538190	MtrunA17_Chr7g0244871	68.478	92	29	0	308	399	6	97	1.48e-40	144
Msa0538190	MtrunA17_Chr7g0251891	37.838	111	68	1	314	423	16	126	2.45e-19	87.4
Msa0538190	MtrunA17_Chr7g0237841	35.714	98	62	1	314	410	623	720	8.94e-15	79.0
Msa0538190	MtrunA17_Chr1g0178071	36.090	133	65	6	295	414	54	179	1.31e-14	76.3
Msa0538190	MtrunA17_Chr8g0345771	37.273	110	61	4	314	417	171	278	2.46e-14	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0538190	AT4G32010.2	50.117	858	311	15	1	852	1	747	0.0	796
Msa0538190	AT4G32010.1	49.884	862	311	16	1	852	1	751	0.0	790
Msa0538190	AT2G30470.1	51.348	779	306	19	1	765	6	725	0.0	710
Msa0538190	AT4G21550.3	34.396	596	282	15	3	570	14	528	4.40e-93	305
Msa0538190	AT4G21550.1	34.899	596	280	12	3	571	14	528	1.26e-89	300
Msa0538190	AT4G21550.1	37.795	127	57	3	687	812	550	655	4.46e-12	70.5
Msa0538190	AT4G21550.2	33.793	580	276	13	3	555	14	512	9.73e-89	292
Msa0538190	AT3G26790.1	39.450	109	65	1	314	421	91	199	7.64e-20	92.0
Msa0538190	AT5G06250.5	32.948	173	95	5	314	467	45	215	1.09e-16	81.6
Msa0538190	AT5G06250.4	32.948	173	95	5	314	467	45	215	1.09e-16	82.0

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Find 287 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTATCCAGTTCCCT+TGG	0.457180	4_1:-17351292	None:intergenic
AAAATGATGGGATGAGGTAC+TGG	0.452920	4_1:+17348289	Msa0538190:CDS
AAAATTACAGGAGGTTTGTT+TGG	0.274922	4_1:+17353189	Msa0538190:three_prime_UTR
AAAGGGATTTGGCAAAGGAG+CGG	0.674141	4_1:-17348514	None:intergenic
AAAGGTTGGATTCTTCGATC+CGG	0.567319	4_1:+17345721	Msa0538190:CDS
AAATTACAGGAGGTTTGTTT+GGG	0.383291	4_1:+17353190	Msa0538190:three_prime_UTR
AAATTCAGCTTCAAATGTGC+AGG	0.519112	4_1:+17352957	Msa0538190:CDS
AACAAATTCTGCTTCAGTAC+AGG	0.472669	4_1:+17349908	Msa0538190:CDS
AACGGTTACCGGAGAGAAAA+TGG	0.205781	4_1:-17345346	None:intergenic
AACTCTTGATCTGTAATTCT+GGG	0.432750	4_1:-17348744	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGATTATACTTCAAGACT+TGG	-	chr4_1:17345211-17345230	None:intergenic	30.0%
GTTAGGAAGGAAATGAAAAA+CGG	-	chr4_1:17345367-17345386	None:intergenic	30.0%
TTGTGAATTTATGAAGGTTG+TGG	+	chr4_1:17345624-17345643	Msa0538190:intron	30.0%
TGTGGAATTGAAGTTGAAAA+TGG	+	chr4_1:17345642-17345661	Msa0538190:exon	30.0%
AAACGCCAAATATTGTTTGT+AGG	+	chr4_1:17346434-17346453	Msa0538190:intron	30.0%
TTAGGCCTACAAACAATATT+TGG	-	chr4_1:17346442-17346461	None:intergenic	30.0%
TATGTCTACATCAAAAAAGC+TGG	+	chr4_1:17346761-17346780	Msa0538190:intron	30.0%
CTGCAGATAATAGAACAAAT+AGG	-	chr4_1:17347573-17347592	None:intergenic	30.0%
TATTTCATCTATTTCCAGAG+AGG	-	chr4_1:17347747-17347766	None:intergenic	30.0%
AATGTATGATGATAGATAGC+AGG	+	chr4_1:17347839-17347858	Msa0538190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	17345207	17353495	17345207	ID=Msa0538190;Name=Msa0538190
chr4_1	mRNA	17345207	17353495	17345207	ID=Msa0538190-mRNA-1;Parent=Msa0538190;Name=Msa0538190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=362\|1\|1\|1\|0.83\|0.84\|13\|385\|901
chr4_1	exon	17345207	17345547	17345207	ID=Msa0538190-mRNA-1:exon:5158;Parent=Msa0538190-mRNA-1
chr4_1	exon	17345640	17345773	17345640	ID=Msa0538190-mRNA-1:exon:5159;Parent=Msa0538190-mRNA-1
chr4_1	exon	17347420	17347501	17347420	ID=Msa0538190-mRNA-1:exon:5160;Parent=Msa0538190-mRNA-1
chr4_1	exon	17347593	17347694	17347593	ID=Msa0538190-mRNA-1:exon:5161;Parent=Msa0538190-mRNA-1
chr4_1	exon	17348165	17348784	17348165	ID=Msa0538190-mRNA-1:exon:5162;Parent=Msa0538190-mRNA-1
chr4_1	exon	17348926	17349022	17348926	ID=Msa0538190-mRNA-1:exon:5163;Parent=Msa0538190-mRNA-1
chr4_1	exon	17349137	17349311	17349137	ID=Msa0538190-mRNA-1:exon:5164;Parent=Msa0538190-mRNA-1
chr4_1	exon	17349853	17349929	17349853	ID=Msa0538190-mRNA-1:exon:5165;Parent=Msa0538190-mRNA-1
chr4_1	exon	17350000	17350425	17350000	ID=Msa0538190-mRNA-1:exon:5166;Parent=Msa0538190-mRNA-1
chr4_1	exon	17350870	17350919	17350870	ID=Msa0538190-mRNA-1:exon:5167;Parent=Msa0538190-mRNA-1
chr4_1	exon	17351065	17351178	17351065	ID=Msa0538190-mRNA-1:exon:5168;Parent=Msa0538190-mRNA-1
chr4_1	exon	17351261	17351328	17351261	ID=Msa0538190-mRNA-1:exon:5169;Parent=Msa0538190-mRNA-1
chr4_1	exon	17352329	17353495	17352329	ID=Msa0538190-mRNA-1:exon:5170;Parent=Msa0538190-mRNA-1
chr4_1	five_prime_UTR	17345207	17345547	17345207	ID=Msa0538190-mRNA-1:five_prime_utr;Parent=Msa0538190-mRNA-1
chr4_1	five_prime_UTR	17345640	17345660	17345640	ID=Msa0538190-mRNA-1:five_prime_utr;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17345661	17345773	17345661	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17347420	17347501	17347420	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17347593	17347694	17347593	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17348165	17348784	17348165	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17348926	17349022	17348926	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17349137	17349311	17349137	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17349853	17349929	17349853	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17350000	17350425	17350000	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17350870	17350919	17350870	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17351065	17351178	17351065	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17351261	17351328	17351261	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	CDS	17352329	17353110	17352329	ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1	three_prime_UTR	17353111	17353495	17353111	ID=Msa0538190-mRNA-1:three_prime_utr;Parent=Msa0538190-mRNA-1

Gene Sequence

>Msa0538190

ATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGGTTGGATTCTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGAGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGAATTCAAGAAACAAAGACAAGCAGCGGCAAGCCAGAGGCCAGCTCTGGATCGTGAATCTTCTGGTCTTGATGCTTTAGCAAATGCTGCGGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGTTGACCACAACAAGACACCCTCGTCATAGGCCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGTAATGTCTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAGCGCGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGAGGGCCAAATGAATTAGATTCAAGTAACCAAGACCAAGTGGCTGATGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCGGATCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCGTTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCAGTTCATGAACAGGAAGACAGTCCTGAAGAGAATAGTGGGCAAGACAGAGACCAACACAATTCACTTTCTTGA

Protein sequence

>Msa0538190

MESKCCMNVVCGTSTSIRWRKGWILRSGEFADLCDKCGSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNEFKKQRQAAASQRPALDRESSGLDALANAAVLGDDASDSGRTPVLTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTKDESEVDSTSRHLTPVDGSENEARGPNELDSSNQDQVADAAKGQLDLNCQPDREDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCCTASAVHEQEDSPEENSGQDRDQHNSLS*