AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538190 MtrunA17_Chr4g0012861 98.113 901 16 1 1 901 1 900 0.0 1833
Msa0538190 MtrunA17_Chr3g0107701 48.115 902 416 12 19 887 16 898 0.0 793
Msa0538190 MtrunA17_Chr5g0432721 43.426 829 403 12 1 815 1 777 0.0 612
Msa0538190 MtrunA17_Chr2g0281191 51.706 586 217 13 270 839 308 843 5.04e-180 543
Msa0538190 MtrunA17_Chr2g0281191 43.411 129 56 2 4 132 29 140 1.50e-26 117
Msa0538190 MtrunA17_Chr7g0244871 68.478 92 29 0 308 399 6 97 1.48e-40 144
Msa0538190 MtrunA17_Chr7g0251891 37.838 111 68 1 314 423 16 126 2.45e-19 87.4
Msa0538190 MtrunA17_Chr7g0237841 35.714 98 62 1 314 410 623 720 8.94e-15 79.0
Msa0538190 MtrunA17_Chr1g0178071 36.090 133 65 6 295 414 54 179 1.31e-14 76.3
Msa0538190 MtrunA17_Chr8g0345771 37.273 110 61 4 314 417 171 278 2.46e-14 77.0
Msa0538190 MtrunA17_Chr7g0276471 40.659 91 49 3 314 401 117 205 6.89e-14 75.1
Msa0538190 MtrunA17_Chr7g0244881 41.441 111 62 2 199 306 3 113 2.81e-13 67.4
Msa0538190 MtrunA17_Chr7g0266821 39.252 107 58 5 319 421 65 168 6.59e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538190 AT4G32010.2 50.117 858 311 15 1 852 1 747 0.0 796
Msa0538190 AT4G32010.1 49.884 862 311 16 1 852 1 751 0.0 790
Msa0538190 AT2G30470.1 51.348 779 306 19 1 765 6 725 0.0 710
Msa0538190 AT4G21550.3 34.396 596 282 15 3 570 14 528 4.40e-93 305
Msa0538190 AT4G21550.1 34.899 596 280 12 3 571 14 528 1.26e-89 300
Msa0538190 AT4G21550.1 37.795 127 57 3 687 812 550 655 4.46e-12 70.5
Msa0538190 AT4G21550.2 33.793 580 276 13 3 555 14 512 9.73e-89 292
Msa0538190 AT3G26790.1 39.450 109 65 1 314 421 91 199 7.64e-20 92.0
Msa0538190 AT5G06250.5 32.948 173 95 5 314 467 45 215 1.09e-16 81.6
Msa0538190 AT5G06250.4 32.948 173 95 5 314 467 45 215 1.09e-16 82.0
Msa0538190 AT5G06250.2 32.948 173 95 5 314 467 45 215 1.17e-16 82.0
Msa0538190 AT1G13260.1 40.000 110 59 5 314 418 187 294 1.84e-15 79.3
Msa0538190 AT3G24650.1 37.931 116 70 2 314 427 571 686 2.31e-15 81.3
Msa0538190 AT1G28300.1 40.741 108 60 3 294 398 149 255 3.14e-15 79.0
Msa0538190 AT2G36080.4 39.815 108 56 4 314 414 37 142 4.08e-15 74.7
Msa0538190 AT2G36080.2 39.815 108 56 4 314 414 37 142 4.08e-15 74.7
Msa0538190 AT2G36080.3 39.815 108 56 4 314 414 37 142 4.62e-15 76.3
Msa0538190 AT2G36080.1 39.815 108 56 4 314 414 37 142 4.89e-15 76.3
Msa0538190 AT5G06250.3 36.923 130 56 5 314 419 45 172 5.23e-15 76.6
Msa0538190 AT5G06250.1 33.103 145 81 4 314 444 45 187 5.83e-15 76.6
Msa0538190 AT4G01500.1 38.261 115 59 4 297 401 9 121 2.44e-14 75.9
Msa0538190 AT1G68840.2 43.011 93 46 4 314 401 187 277 4.05e-14 75.5
Msa0538190 AT1G68840.1 43.011 93 46 4 314 401 187 277 4.05e-14 75.5
Msa0538190 AT2G46870.1 39.560 91 50 3 314 401 34 122 7.83e-14 73.9
Msa0538190 AT3G11580.4 36.207 116 57 4 314 414 28 141 6.84e-13 69.7
Msa0538190 AT3G11580.2 36.207 116 57 4 314 414 28 141 6.84e-13 69.7
Msa0538190 AT3G11580.5 36.207 116 57 4 314 414 28 141 6.84e-13 69.7
Msa0538190 AT1G01030.2 40.659 91 49 3 314 401 55 143 7.04e-13 71.2
Msa0538190 AT1G01030.1 40.659 91 49 3 314 401 55 143 8.79e-13 71.2
Msa0538190 AT3G11580.3 36.207 116 57 4 314 414 28 141 4.28e-12 69.3
Msa0538190 AT3G11580.1 36.207 116 57 4 314 414 28 141 4.77e-12 67.8

Find 287 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTTTCAATTTAGATTT+TGG 0.133418 4_1:+17349207 Msa0538190:CDS
TACATCCTGCTATTATTATT+TGG 0.167699 4_1:-17349230 None:intergenic
CAACTCTTGATCTGTAATTC+TGG 0.172835 4_1:-17348745 None:intergenic
TTACCCTCTGTTGGAGAATT+TGG 0.188202 4_1:+17348369 Msa0538190:CDS
AACGGTTACCGGAGAGAAAA+TGG 0.205781 4_1:-17345346 None:intergenic
CGAGCGAGTTGCGGTGGTTT+TGG 0.215530 4_1:-17345439 None:intergenic
GCATACCCCTCACATTTAAT+TGG 0.234093 4_1:-17348248 None:intergenic
TGACTTTAGAGTAATGTAAA+AGG 0.237204 4_1:-17353135 None:intergenic
AAGAAAAGAACTCGAAATAT+TGG 0.272591 4_1:+17350255 Msa0538190:CDS
AAAATTACAGGAGGTTTGTT+TGG 0.274922 4_1:+17353189 Msa0538190:three_prime_UTR
GGACGTGTATGGAGAACTTT+TGG 0.278484 4_1:+17351145 Msa0538190:CDS
TCAAGTGAAACTTCCTATTC+TGG 0.278901 4_1:+17350036 Msa0538190:CDS
CCAACAGAGGGTAAAACTTC+TGG 0.283471 4_1:-17348360 None:intergenic
GAGGCCTTGCTATACGTATC+TGG 0.288912 4_1:-17348677 None:intergenic
ATTACTTCAGCACATGCTTT+TGG 0.292122 4_1:-17349005 None:intergenic
CCTATATTAAGTGGTTATTC+TGG 0.299020 4_1:+17350075 Msa0538190:CDS
TGCGTAAGCTATAAAATTAC+AGG 0.302650 4_1:+17353177 Msa0538190:three_prime_UTR
CAAACCTCACAATGTTGATT+TGG 0.320944 4_1:+17348314 Msa0538190:CDS
AAGCGTGTGCATGCAGAATA+AGG 0.324375 4_1:-17345277 None:intergenic
ATCAGTTGCTTCCGCGATAT+TGG 0.327434 4_1:+17348721 Msa0538190:CDS
ATTCAGGAGCCTCCTGTGTT+TGG 0.329853 4_1:+17350864 Msa0538190:intron
TGTGGAATTGAAGTTGAAAA+TGG 0.332556 4_1:+17345642 Msa0538190:exon
TGAACGGAGGAGAAGAAGTT+AGG 0.335477 4_1:-17345381 None:intergenic
CAACTGCAAGCTGGCGATAC+TGG 0.336996 4_1:+17349290 Msa0538190:CDS
TCTTGCCCACTATTCTCTTC+AGG 0.340208 4_1:-17353060 None:intergenic
TGCCCTTCCCACTTGGTGGC+TGG 0.342375 4_1:-17352516 None:intergenic
ACAACACTTGGCTTAACTTC+TGG 0.343319 4_1:-17350369 None:intergenic
CCCTGAGGGGAAACTTATAA+TGG 0.343393 4_1:+17349872 Msa0538190:CDS
AGAGTTGGCCTAGGAGGTTT+AGG 0.345670 4_1:-17348618 None:intergenic
TTCCCTTGGATTCAATTCAT+TGG 0.348370 4_1:-17351278 None:intergenic
GTTCCGGTCACAGTTGGTTA+TGG 0.348632 4_1:-17345488 None:intergenic
CACTGGAGCTGAAACTTACT+TGG 0.350730 4_1:+17350316 Msa0538190:CDS
AATGAAAAGCCTAATGAATC+TGG 0.351647 4_1:+17348174 Msa0538190:CDS
ACTTTCTAGAGAGCGCATTT+AGG 0.352085 4_1:-17350134 None:intergenic
TCAAGAGTTGCAGCAAATAT+CGG 0.354064 4_1:+17348758 Msa0538190:CDS
CGACATTTAACTCCAGTTGA+TGG 0.354939 4_1:+17352706 Msa0538190:CDS
TTTGCTGTTCCAGATTCATT+AGG 0.360782 4_1:-17348183 None:intergenic
TTACTTGAATCTAATTCATT+TGG 0.362360 4_1:-17352751 None:intergenic
TTGTCTTCCCTCACTCTCAT+TGG 0.362735 4_1:-17352989 None:intergenic
TGGAGATAAGGCGGCGGCGG+TGG 0.370879 4_1:-17345468 None:intergenic
ATGTGAGGGGTATGCAAGTT+GGG 0.375012 4_1:+17348256 Msa0538190:CDS
CAGCATCAGCCACTTGGTCT+TGG 0.376062 4_1:-17352774 None:intergenic
CGGAAGTTTGAGGGAAGTTC+CGG 0.376643 4_1:-17345504 None:intergenic
TCCCTTGGATTCAATTCATT+GGG 0.378007 4_1:-17351277 None:intergenic
AGGACATTATGAAAGGGATT+TGG 0.378577 4_1:-17348525 None:intergenic
TTAGCAAATGCTGCGGTACT+TGG 0.380392 4_1:+17352403 Msa0538190:CDS
GTCTACTTCTGATTCATCCT+TGG 0.381182 4_1:-17352674 None:intergenic
AGGCCCTCAGGTTGAGAGAT+AGG 0.381204 4_1:-17349149 None:intergenic
AAATTACAGGAGGTTTGTTT+GGG 0.383291 4_1:+17353190 Msa0538190:three_prime_UTR
ATTACCTGTGCAAGTACTTC+AGG 0.390989 4_1:+17347662 Msa0538190:CDS
ATATTTGTGGTACGATCTAC+TGG 0.393389 4_1:+17350897 Msa0538190:CDS
TGGCCTTCTTCAGTCTCAAA+AGG 0.396098 4_1:+17350095 Msa0538190:CDS
TAAGGCGGCGGCGGTGGTGG+CGG 0.397381 4_1:-17345462 None:intergenic
GCTCTGGATCGTGAATCTTC+TGG 0.398177 4_1:+17352370 Msa0538190:CDS
ACTTACTTGGGAAGAGGCTC+AGG 0.399619 4_1:+17350329 Msa0538190:CDS
GTCATCATGCTCAGAGTGTT+TGG 0.401168 4_1:-17352853 None:intergenic
AGATAAGGCGGCGGCGGTGG+TGG 0.402541 4_1:-17345465 None:intergenic
GGAAACTTATAATGGGGTTC+AGG 0.403096 4_1:+17349880 Msa0538190:CDS
TTCCTTCCTCGTCCTTCGGC+AGG 0.411704 4_1:-17348699 None:intergenic
CCAGAATAACCACTTAATAT+AGG 0.414414 4_1:-17350075 None:intergenic
TCTGGTTTGATTTCTCTAGA+AGG 0.414545 4_1:-17348342 None:intergenic
ACTCTATCTCCAGGCTTAGA+AGG 0.416607 4_1:+17348636 Msa0538190:CDS
TGAATTGAATCCAAGGGAAC+TGG 0.417947 4_1:+17351282 Msa0538190:CDS
CGGAACTTCCCTCAAACTTC+CGG 0.418455 4_1:+17345505 Msa0538190:five_prime_UTR
TCATTCTCCGAACCATCAAC+TGG 0.418732 4_1:-17352718 None:intergenic
AGAAAAGAACTCGAAATATT+GGG 0.421447 4_1:+17350256 Msa0538190:CDS
TATAGCTATTATATGTATAG+TGG 0.423994 4_1:-17353255 None:intergenic
TGCTTCTGCAGTTCATGAAC+AGG 0.426089 4_1:+17353029 Msa0538190:CDS
CTTGAATTGCCAACCGGATC+GGG 0.426831 4_1:+17352813 Msa0538190:CDS
GGGAATTATGCAGAAAATGA+TGG 0.428592 4_1:+17348276 Msa0538190:CDS
TCTCCATACACGTCCACTTA+GGG 0.429073 4_1:-17351137 None:intergenic
AACTCTTGATCTGTAATTCT+GGG 0.432750 4_1:-17348744 None:intergenic
AATGTCACCTCCACTTCTAT+TGG 0.433907 4_1:+17348572 Msa0538190:CDS
GCTTGCATGTCTTCCCGATC+CGG 0.434187 4_1:-17352826 None:intergenic
ATGTTCCATGCAAAAGAATC+TGG 0.435693 4_1:+17347451 Msa0538190:CDS
CCTGTGTTTCCTTCTAAGCC+TGG 0.440594 4_1:-17348645 None:intergenic
CCTTGGCAGCATCAGCCACT+TGG 0.441564 4_1:-17352780 None:intergenic
ATTCTCATAAACACCAGAAT+AGG 0.444115 4_1:-17350049 None:intergenic
TTCACTTGAATGAGAACCAT+TGG 0.445941 4_1:-17350022 None:intergenic
TAATGTCCTTGTTGATGAAA+GGG 0.448219 4_1:+17348539 Msa0538190:CDS
CACGATCCAGAGCTGGCCTC+TGG 0.448625 4_1:-17352360 None:intergenic
TTCTTCTCAGGAACCAGCAC+AGG 0.450915 4_1:-17350237 None:intergenic
GGCAAGCCAGAGGCCAGCTC+TGG 0.450969 4_1:+17352354 Msa0538190:CDS
CCCATTATAAGTTTCCCCTC+AGG 0.451841 4_1:-17349873 None:intergenic
GACTTTAGAGTAATGTAAAA+GGG 0.452325 4_1:-17353134 None:intergenic
AAAATGATGGGATGAGGTAC+TGG 0.452920 4_1:+17348289 Msa0538190:CDS
TGCTGGTCGAATTGGTCGCT+TGG 0.454425 4_1:+17348977 Msa0538190:CDS
AATGTGAGGGGTATGCAAGT+TGG 0.455328 4_1:+17348255 Msa0538190:CDS
CTGATTCCTTCCTCGTCCTT+CGG 0.456088 4_1:-17348703 None:intergenic
TTTAACTCCAGTTGATGGTT+CGG 0.456293 4_1:+17352711 Msa0538190:CDS
CGGAGGAGAAGAAGTTAGGA+AGG 0.456972 4_1:-17345377 None:intergenic
AAAAGATTATCCAGTTCCCT+TGG 0.457180 4_1:-17351292 None:intergenic
CAACAAGACACCCTCGTCAT+AGG 0.457379 4_1:+17352467 Msa0538190:CDS
CAATTTCATCGTGAGTCAAA+TGG 0.458649 4_1:+17348408 Msa0538190:CDS
GGTGACGTTAGCTTTGATTC+CGG 0.459786 4_1:+17345526 Msa0538190:five_prime_UTR
ATAATGTCCTTGTTGATGAA+AGG 0.463710 4_1:+17348538 Msa0538190:CDS
GGCCTTCTTCAGTCTCAAAA+GGG 0.464157 4_1:+17350096 Msa0538190:CDS
TGGAAAGAAGAGTATATTTG+TGG 0.465676 4_1:+17350884 Msa0538190:CDS
TGTTGCATGAACGTTGTTTG+TGG 0.466630 4_1:+17345673 Msa0538190:CDS
CAGTTGCATAGACTGAATAC+AGG 0.468777 4_1:-17349273 None:intergenic
CCTGAGGGGAAACTTATAAT+GGG 0.471341 4_1:+17349873 Msa0538190:CDS
GAGAATATACCTATATTAAG+TGG 0.472374 4_1:+17350066 Msa0538190:CDS
AACAAATTCTGCTTCAGTAC+AGG 0.472669 4_1:+17349908 Msa0538190:CDS
AGGCCTCCTGCCGAAGGACG+AGG 0.477953 4_1:+17348693 Msa0538190:CDS
TGTTTGCCCTTCCCACTTGG+TGG 0.481303 4_1:-17352520 None:intergenic
CACAGTTGGTTATGGAGATA+AGG 0.482353 4_1:-17345480 None:intergenic
GCAAGTGATGCTGGTCGAAT+TGG 0.484028 4_1:+17348969 Msa0538190:CDS
CAAGAGTTGCAGCAAATATC+GGG 0.484696 4_1:+17348759 Msa0538190:CDS
TTCCCAGCAGTGCATATCTC+TGG 0.485291 4_1:+17348221 Msa0538190:CDS
GGAGATGATGCAAGTGACTC+TGG 0.485895 4_1:+17352424 Msa0538190:CDS
CCTCACAATGTTGATTTGGA+TGG 0.486454 4_1:+17348318 Msa0538190:CDS
AGACACCCTCGTCATAGGCC+TGG 0.487047 4_1:+17352472 Msa0538190:CDS
GACAGTCCTGAAGAGAATAG+TGG 0.489705 4_1:+17353054 Msa0538190:CDS
TAGCCAGAGATATGCACTGC+TGG 0.491104 4_1:-17348224 None:intergenic
CGATTCGGTGGCGGAAAGGT+TGG 0.493342 4_1:+17345707 Msa0538190:CDS
TATTGATAGCGAGGATGCAC+TGG 0.493835 4_1:+17350299 Msa0538190:CDS
GTGGAACCTCTACGTCGATT+CGG 0.494921 4_1:+17345692 Msa0538190:CDS
CCAAGTGGCTGATGCTGCCA+AGG 0.498515 4_1:+17352780 Msa0538190:CDS
TTTGGCCAAATAATAATAGC+AGG 0.500753 4_1:+17349225 Msa0538190:CDS
ATCAACAAGGACATTATGAA+AGG 0.502025 4_1:-17348532 None:intergenic
GAGACATACCTGAAGCAAAA+TGG 0.503082 4_1:+17352904 Msa0538190:CDS
TTCAAGAAAGTGAATTGTGT+TGG 0.503800 4_1:-17353089 None:intergenic
GTGAGTCAAATGGTTCATCT+AGG 0.506203 4_1:+17348418 Msa0538190:CDS
GGCTAACCAATTAAATGTGA+GGG 0.506229 4_1:+17348242 Msa0538190:CDS
TGGTGGCGGCGAGCGAGTTG+CGG 0.507156 4_1:-17345448 None:intergenic
TCACTTGAATGAGAACCATT+GGG 0.509159 4_1:-17350021 None:intergenic
CTAACGTCACCGGAAGTTTG+AGG 0.510766 4_1:-17345514 None:intergenic
GTTGTCTTTACCACCTGTGC+TGG 0.513012 4_1:+17350224 Msa0538190:CDS
TGCTTCAGGTATGTCTCCAA+CGG 0.513673 4_1:-17352898 None:intergenic
GCTTCAGGTATGTCTCCAAC+GGG 0.514701 4_1:-17352897 None:intergenic
CTTCCTCGTCCTTCGGCAGG+AGG 0.514830 4_1:-17348696 None:intergenic
CAGTCTATGCAACTGCAAGC+TGG 0.514895 4_1:+17349281 Msa0538190:CDS
CCTGGAGATAGAGTTGGCCT+AGG 0.516685 4_1:-17348627 None:intergenic
TGCAGTAACATTTAGCCGTA+TGG 0.517779 4_1:+17349848 Msa0538190:intron
ACTTGAATTGCCAACCGGAT+CGG 0.518323 4_1:+17352812 Msa0538190:CDS
AAATTCAGCTTCAAATGTGC+AGG 0.519112 4_1:+17352957 Msa0538190:CDS
TCTCCATAACCAACTGTGAC+CGG 0.520011 4_1:+17345485 Msa0538190:five_prime_UTR
TTCTAGAGAGCGCATTTAGG+TGG 0.520190 4_1:-17350131 None:intergenic
TAAGGAGAAGAAAGAAAGAG+AGG 0.521502 4_1:-17345259 None:intergenic
CCCTCCTATCTCTCAACCTG+AGG 0.521917 4_1:+17349145 Msa0538190:CDS
TAAATGCGCTCTCTAGAAAG+TGG 0.523105 4_1:+17350136 Msa0538190:CDS
TTGTGTTTGCCCTTCCCACT+TGG 0.523559 4_1:-17352523 None:intergenic
ATTAGACTTGAATTGCCAAC+CGG 0.524003 4_1:+17352807 Msa0538190:CDS
GCAAGATATATATGAATCAC+TGG 0.525449 4_1:+17348464 Msa0538190:CDS
GTGTTGCAGCGTGGAGGAGA+GGG 0.525963 4_1:-17345406 None:intergenic
ACGGTTACCGGAGAGAAAAT+GGG 0.527913 4_1:-17345345 None:intergenic
CCGATCTATGTGATAAGTGC+GGG 0.529734 4_1:+17345752 Msa0538190:CDS
TAACGTCACCGGAAGTTTGA+GGG 0.531760 4_1:-17345513 None:intergenic
ATGTAGAAATGCCTGAAAGC+AGG 0.533071 4_1:+17350190 Msa0538190:CDS
AGGCCTTGCTATACGTATCT+GGG 0.533919 4_1:-17348676 None:intergenic
TTCAACTCCTTGCCTCACAC+TGG 0.534815 4_1:-17353308 None:intergenic
TCCTCGATCATGACAACACT+TGG 0.535986 4_1:-17350381 None:intergenic
GAGTGAGGGAAGACAAAATG+AGG 0.539623 4_1:+17352996 Msa0538190:CDS
CTCCCAATGAATTGAATCCA+AGG 0.539749 4_1:+17351275 Msa0538190:CDS
TTATGGAGATAAGGCGGCGG+CGG 0.541810 4_1:-17345471 None:intergenic
ACATAGATCGGCAAATTCAC+CGG 0.541892 4_1:-17345740 None:intergenic
TCAACAAGGACATTATGAAA+GGG 0.542098 4_1:-17348531 None:intergenic
GGAATCAAAGCTAACGTCAC+CGG 0.542767 4_1:-17345524 None:intergenic
ATGCTTAGTGCAAGTGATGC+TGG 0.543355 4_1:+17348960 Msa0538190:CDS
TGTGTTGCAGCGTGGAGGAG+AGG 0.543588 4_1:-17345407 None:intergenic
CCTAGGCCAACTCTATCTCC+AGG 0.543621 4_1:+17348627 Msa0538190:CDS
TTCTCCATACACGTCCACTT+AGG 0.543699 4_1:-17351138 None:intergenic
CAGTTGGTGCTGACATGGAT+TGG 0.544785 4_1:+17350163 Msa0538190:CDS
ATTCAAGTCTAATTGTCCCT+TGG 0.544992 4_1:-17352797 None:intergenic
GAAGATTCACGATCCAGAGC+TGG 0.546355 4_1:-17352367 None:intergenic
GAAGAAAGAAAGAGAAGGTG+AGG 0.550740 4_1:-17345323 None:intergenic
ATACGCAAAGGAAGGCCCTC+AGG 0.550975 4_1:-17349161 None:intergenic
ATTTGGCAAAGGAGCGGTAA+GGG 0.556170 4_1:-17348508 None:intergenic
AGCACCCAGGCCTATGACGA+GGG 0.556180 4_1:-17352477 None:intergenic
GATGATTATACTTCAAGACT+TGG 0.556252 4_1:-17345208 None:intergenic
GACACCCTCGTCATAGGCCT+GGG 0.556520 4_1:+17352473 Msa0538190:CDS
CCATTATAAGTTTCCCCTCA+GGG 0.557442 4_1:-17349872 None:intergenic
AAGTCCTGAAGTACTTGCAC+AGG 0.558364 4_1:-17347666 None:intergenic
ATGATGCAAGTGACTCTGGC+AGG 0.558412 4_1:+17352428 Msa0538190:CDS
GAACTCAGTTGGTGCTGACA+TGG 0.559385 4_1:+17350158 Msa0538190:CDS
AAGATGTGAAAGGAAAAGAA+TGG 0.562266 4_1:+17349186 Msa0538190:CDS
TTTCCGTCTAATATGCCCAA+TGG 0.563491 4_1:+17350006 Msa0538190:CDS
GATCGGGAAGACATGCAAGC+TGG 0.563741 4_1:+17352829 Msa0538190:CDS
GTTTCCCCTCAGGGTCCATA+CGG 0.563865 4_1:-17349863 None:intergenic
CTTGGCTTAACTTCTGGAGG+TGG 0.565044 4_1:-17350363 None:intergenic
CCCGCACTTATCACATAGAT+CGG 0.565675 4_1:-17345752 None:intergenic
GCTGAAACTTACTTGGGAAG+AGG 0.565759 4_1:+17350323 Msa0538190:CDS
TATCCAGCCACCAAGTGGGA+AGG 0.566881 4_1:+17352513 Msa0538190:CDS
AAAGGTTGGATTCTTCGATC+CGG 0.567319 4_1:+17345721 Msa0538190:CDS
ATGCAGAAAATGATGGGATG+AGG 0.568840 4_1:+17348283 Msa0538190:CDS
ATCCAGCCACCAAGTGGGAA+GGG 0.569945 4_1:+17352514 Msa0538190:CDS
GACAAGCAGCGGCAAGCCAG+AGG 0.570055 4_1:+17352344 Msa0538190:CDS
TTCTCAGGAACCAGCACAGG+TGG 0.570575 4_1:-17350234 None:intergenic
CCTCCTATCTCTCAACCTGA+GGG 0.572708 4_1:+17349146 Msa0538190:CDS
ACGTCGATTCGGTGGCGGAA+AGG 0.573751 4_1:+17345703 Msa0538190:CDS
ACTTATAATGGGGTTCAGGA+AGG 0.575522 4_1:+17349884 Msa0538190:CDS
CCTCTACGTCGATTCGGTGG+CGG 0.575763 4_1:+17345698 Msa0538190:CDS
AGGGAAGTTCCGGTCACAGT+TGG 0.576253 4_1:-17345494 None:intergenic
AGCCAGAGATATGCACTGCT+GGG 0.576349 4_1:-17348223 None:intergenic
GATTTGGCAAAGGAGCGGTA+AGG 0.576714 4_1:-17348509 None:intergenic
TGTCTTGTTGTGGTCAACAC+TGG 0.577354 4_1:-17352454 None:intergenic
TCTAGAAAGTGGAACTCAGT+TGG 0.578317 4_1:+17350147 Msa0538190:CDS
GGAGATAGAGTTGGCCTAGG+AGG 0.578335 4_1:-17348624 None:intergenic
TCTAGAGAGCGCATTTAGGT+GGG 0.579194 4_1:-17350130 None:intergenic
TCCATGCAAAAGAATCTGGT+TGG 0.579415 4_1:+17347455 Msa0538190:CDS
TTCAAAGAGTGGCACAATGG+TGG 0.580676 4_1:-17348934 None:intergenic
GGAATTATGCAGAAAATGAT+GGG 0.581193 4_1:+17348277 Msa0538190:CDS
CGTGGAGGAGAGGGTTTGAA+CGG 0.581485 4_1:-17345397 None:intergenic
GCATGTCTTCCCGATCCGGT+TGG 0.581547 4_1:-17352822 None:intergenic
CCTCAGGTTGAGAGATAGGA+GGG 0.582109 4_1:-17349145 None:intergenic
TCTAAGCCTGGAGATAGAGT+TGG 0.583408 4_1:-17348633 None:intergenic
TCAAATGGTTCATCTAGGAC+TGG 0.583729 4_1:+17348423 Msa0538190:CDS
GATCTAGACGCCAATAGAAG+TGG 0.585121 4_1:-17348582 None:intergenic
TATCTGCAGCGTCTCCATTG+TGG 0.587990 4_1:+17347584 Msa0538190:intron
TGGCGGCGAGCGAGTTGCGG+TGG 0.589236 4_1:-17345445 None:intergenic
ATAGCAAGGCCTCCTGCCGA+AGG 0.591462 4_1:+17348687 Msa0538190:CDS
AATGGGAAGAAAGAAAGAGA+AGG 0.592521 4_1:-17345328 None:intergenic
ATACTCTTCTTTCCAAACAC+AGG 0.593392 4_1:-17350876 None:intergenic
GTCTGTATCCAGCCACCAAG+TGG 0.593579 4_1:+17352508 Msa0538190:CDS
ATGACGAGGGTGTCTTGTTG+TGG 0.595378 4_1:-17352464 None:intergenic
CAGACATTACACGTGCATGT+AGG 0.595381 4_1:-17352547 None:intergenic
ACACTTGGCTTAACTTCTGG+AGG 0.596735 4_1:-17350366 None:intergenic
TTATGAAAGGGATTTGGCAA+AGG 0.597001 4_1:-17348519 None:intergenic
CCCTCAGGTTGAGAGATAGG+AGG 0.598922 4_1:-17349146 None:intergenic
GCTTCCAAATTCTCCAACAG+AGG 0.599653 4_1:-17348373 None:intergenic
ACAGTCCTGAAGAGAATAGT+GGG 0.601508 4_1:+17353055 Msa0538190:CDS
TTCACATCTTGGATACGCAA+AGG 0.602051 4_1:-17349173 None:intergenic
TCCCAATGAATTGAATCCAA+GGG 0.602257 4_1:+17351276 Msa0538190:CDS
TGGCTGGATACAGACAATAC+AGG 0.604446 4_1:-17352500 None:intergenic
GAGGTTGCTTATTGATAGCG+AGG 0.605174 4_1:+17350290 Msa0538190:CDS
GAACCATTGGGCATATTAGA+CGG 0.606117 4_1:-17350009 None:intergenic
CATCTTGGATACGCAAAGGA+AGG 0.606572 4_1:-17349169 None:intergenic
CTCTTCTTTCCAAACACAGG+AGG 0.606920 4_1:-17350873 None:intergenic
CCATCCAAATCAACATTGTG+AGG 0.607409 4_1:-17348318 None:intergenic
TGGCTAACCAATTAAATGTG+AGG 0.608102 4_1:+17348241 Msa0538190:CDS
TGAAGAAGCAAATCTCCCGT+TGG 0.612037 4_1:+17352882 Msa0538190:CDS
CTCCATACACGTCCACTTAG+GGG 0.615994 4_1:-17351136 None:intergenic
TTGCGTATCCAAGATGTGAA+AGG 0.616182 4_1:+17349176 Msa0538190:CDS
TCCATACACGTCCACTTAGG+GGG 0.618210 4_1:-17351135 None:intergenic
AGAGTGTACTTCATGTGGCA+AGG 0.623087 4_1:+17347480 Msa0538190:CDS
CAAGAAACAAAGACAAGCAG+CGG 0.623503 4_1:+17352333 Msa0538190:CDS
TTTGTTCCCTTTCATCAACA+AGG 0.624287 4_1:-17348545 None:intergenic
GAGCACCCAGGCCTATGACG+AGG 0.624956 4_1:-17352478 None:intergenic
AGTAAAGCATCTTCTTGCCG+TGG 0.625829 4_1:+17353330 Msa0538190:three_prime_UTR
CTTCCAAATTCTCCAACAGA+GGG 0.627135 4_1:-17348372 None:intergenic
ACAGACAACCAATGAGAGTG+AGG 0.631032 4_1:+17352981 Msa0538190:CDS
TTCAAGTAACCAAGACCAAG+TGG 0.631930 4_1:+17352765 Msa0538190:CDS
TTAGGTTGTACACCAGTGTG+AGG 0.632561 4_1:+17353296 Msa0538190:three_prime_UTR
TTGTACACCAGTGTGAGGCA+AGG 0.633191 4_1:+17353301 Msa0538190:three_prime_UTR
GTAAGCTATAAAATTACAGG+AGG 0.633774 4_1:+17353180 Msa0538190:three_prime_UTR
GGAGGAGAGGGTTTGAACGG+AGG 0.640796 4_1:-17345394 None:intergenic
GCCGATCTATGTGATAAGTG+CGG 0.642160 4_1:+17345751 Msa0538190:CDS
CTCCTGCCGAAGGACGAGGA+AGG 0.643593 4_1:+17348697 Msa0538190:CDS
CTAGACGCCAATAGAAGTGG+AGG 0.644014 4_1:-17348579 None:intergenic
CAGCTTGAAATACTTGACAC+TGG 0.646808 4_1:+17347626 Msa0538190:CDS
TTGAAGCAACACATCCACAA+TGG 0.648024 4_1:-17347598 None:intergenic
GTAATTCTGGGCCAATATCG+CGG 0.648517 4_1:-17348732 None:intergenic
TATTTGTGGTACGATCTACT+GGG 0.648538 4_1:+17350898 Msa0538190:CDS
TCTGTATCCAGCCACCAAGT+GGG 0.649632 4_1:+17352509 Msa0538190:CDS
GGTTCGGAGAATGAAGCAAG+AGG 0.650245 4_1:+17352727 Msa0538190:CDS
CCGCCACCGAATCGACGTAG+AGG 0.651077 4_1:-17345698 None:intergenic
GCCAAGTGTTGTCATGATCG+AGG 0.651574 4_1:+17350380 Msa0538190:CDS
AGTTGCATAGACTGAATACA+GGG 0.651610 4_1:-17349272 None:intergenic
ACTGGAGCTGAAACTTACTT+GGG 0.656896 4_1:+17350317 Msa0538190:CDS
TTTCCCAGATACGTATAGCA+AGG 0.657040 4_1:+17348673 Msa0538190:CDS
AACTGGAGTTAAATGTCGAG+AGG 0.658373 4_1:-17352701 None:intergenic
CTTAGAAGGAAACACAGGCA+TGG 0.658844 4_1:+17348650 Msa0538190:CDS
CCAGGCTTAGAAGGAAACAC+AGG 0.660663 4_1:+17348645 Msa0538190:CDS
GCTAACCAATTAAATGTGAG+GGG 0.663001 4_1:+17348243 Msa0538190:CDS
CAAGTGGCTGATGCTGCCAA+GGG 0.663194 4_1:+17352781 Msa0538190:CDS
TGGTTATGGAGATAAGGCGG+CGG 0.664009 4_1:-17345474 None:intergenic
ACCACAGGATAAGTGAGCAG+TGG 0.664291 4_1:+17351058 Msa0538190:intron
GAACCTCTACGTCGATTCGG+TGG 0.665625 4_1:+17345695 Msa0538190:CDS
CTGAGGGGAAACTTATAATG+GGG 0.667153 4_1:+17349874 Msa0538190:CDS
TCAGCAATCATGGAGGACCA+AGG 0.667770 4_1:+17352657 Msa0538190:CDS
GCATTTGTGTTGCAGCGTGG+AGG 0.669736 4_1:-17345412 None:intergenic
TCTGCATGACAGTTAAACGC+CGG 0.670607 4_1:+17352566 Msa0538190:CDS
TTTAGCCGTATGGACCCTGA+GGG 0.672269 4_1:+17349858 Msa0538190:CDS
AAAGGGATTTGGCAAAGGAG+CGG 0.674141 4_1:-17348514 None:intergenic
TTTGCATTTGTGTTGCAGCG+TGG 0.677898 4_1:-17345415 None:intergenic
GTTCGGAGAATGAAGCAAGA+GGG 0.686630 4_1:+17352728 Msa0538190:CDS
CAGACAACCAATGAGAGTGA+GGG 0.686644 4_1:+17352982 Msa0538190:CDS
ATTTAGCCGTATGGACCCTG+AGG 0.687200 4_1:+17349857 Msa0538190:CDS
AGTTGGTTATGGAGATAAGG+CGG 0.693886 4_1:-17345477 None:intergenic
TGATGCTTTAGCAAATGCTG+CGG 0.695273 4_1:+17352396 Msa0538190:CDS
GATGTATTAATATATTACCA+CGG 0.703213 4_1:-17353347 None:intergenic
TTGCATAGACTGAATACAGG+GGG 0.707100 4_1:-17349270 None:intergenic
TGGAGAGAGTGTACTTCATG+TGG 0.711681 4_1:+17347475 Msa0538190:CDS
CAGACAATACAGGAGCACCC+AGG 0.725333 4_1:-17352490 None:intergenic
CTTGAAATACTTGACACTGG+TGG 0.733966 4_1:+17347629 Msa0538190:CDS
TTAGCCGTATGGACCCTGAG+GGG 0.752430 4_1:+17349859 Msa0538190:CDS
GTTGCATAGACTGAATACAG+GGG 0.770443 4_1:-17349271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAATTTTAATTT+TGG + chr4_1:17351545-17351564 Msa0538190:intron 0.0%
!!! TTTTTTGTTAATTTGAATTT+GGG + chr4_1:17345993-17346012 Msa0538190:intron 10.0%
!! TCAAAAATAAAATAAAATTG+AGG + chr4_1:17346030-17346049 Msa0538190:intron 10.0%
!!! TTTTTTATTTTTTGAAAACT+CGG - chr4_1:17346632-17346651 None:intergenic 10.0%
!!! TATATATTTATTTTTTTAGG+TGG - chr4_1:17346805-17346824 None:intergenic 10.0%
!!! CCATATATATTTATTTTTTT+AGG - chr4_1:17346808-17346827 None:intergenic 10.0%
!! CCTAAAAAAATAAATATATA+TGG + chr4_1:17346805-17346824 Msa0538190:intron 10.0%
!! TTCTTTAAATTGTTAATTAT+AGG + chr4_1:17348805-17348824 Msa0538190:intron 10.0%
!!! ATTATTTAGATTTTTTTCTT+TGG + chr4_1:17349420-17349439 Msa0538190:intron 10.0%
!! AGAAAAAAAATATTATATAG+AGG - chr4_1:17349538-17349557 None:intergenic 10.0%
!!! AAAATTTAGTTCAATATTTT+TGG - chr4_1:17349652-17349671 None:intergenic 10.0%
!!! TTATTTGATACATTTTTTTT+TGG + chr4_1:17349763-17349782 Msa0538190:intron 10.0%
!! TAAAATTTAAATAAAAGACT+GGG - chr4_1:17351541-17351560 None:intergenic 10.0%
!! TTAAAATTTAAATAAAAGAC+TGG - chr4_1:17351542-17351561 None:intergenic 10.0%
!!! TTATTTTACAGATTTTTTTT+AGG + chr4_1:17353419-17353438 Msa0538190:three_prime_UTR 10.0%
!!! GTTTTTTGTTAATTTGAATT+TGG + chr4_1:17345992-17346011 Msa0538190:intron 15.0%
!!! TTTTTGTTAATTTGAATTTG+GGG + chr4_1:17345994-17346013 Msa0538190:intron 15.0%
!!! ATAGTTTAAAACGTTATTTT+TGG + chr4_1:17346249-17346268 Msa0538190:intron 15.0%
!!! TATCAGCAATAATTATATTT+TGG - chr4_1:17346345-17346364 None:intergenic 15.0%
!!! AATTTCTTTTTCCATTTTTT+GGG - chr4_1:17346390-17346409 None:intergenic 15.0%
!!! GAGTTTTCAAAAAATAAAAA+AGG + chr4_1:17346631-17346650 Msa0538190:intron 15.0%
!! AAAATCATATATAAACAAAC+AGG - chr4_1:17346831-17346850 None:intergenic 15.0%
!!! TTATATATGATTTTGAAGTT+TGG + chr4_1:17346837-17346856 Msa0538190:intron 15.0%
!!! ATTTTTTACTTATTTGAAGT+TGG + chr4_1:17347337-17347356 Msa0538190:intron 15.0%
!!! TTTTTTACTTATTTGAAGTT+GGG + chr4_1:17347338-17347357 Msa0538190:intron 15.0%
!!! ATTTCAATAGTCTTTTAATT+TGG + chr4_1:17351024-17351043 Msa0538190:intron 15.0%
!! AAAATTTAAATAAAAGACTG+GGG - chr4_1:17351540-17351559 None:intergenic 15.0%
!! TTCAAAACATATAATTTAAG+AGG - chr4_1:17352165-17352184 None:intergenic 15.0%
!! TTATTGTTGTGAATTTATGA+AGG + chr4_1:17345618-17345637 Msa0538190:intron 20.0%
!!! TGATTTGATTTGAAATTGTA+CGG + chr4_1:17345837-17345856 Msa0538190:intron 20.0%
!!! GTTTGTTAAATTGAATTTGA+AGG + chr4_1:17345932-17345951 Msa0538190:intron 20.0%
!! AATCAACAACAACATAAAAA+GGG - chr4_1:17346133-17346152 None:intergenic 20.0%
!! AAATAAAATGTATGTAGTTG+CGG + chr4_1:17346199-17346218 Msa0538190:intron 20.0%
!!! CAATTTCTTTTTCCATTTTT+TGG - chr4_1:17346391-17346410 None:intergenic 20.0%
!! AAAAAAGCTGGATAATTATA+TGG + chr4_1:17346773-17346792 Msa0538190:intron 20.0%
!! ATTTACATCTATACTAATCA+TGG - chr4_1:17347317-17347336 None:intergenic 20.0%
!! CATTAAAATACAAAAGTTGT+GGG - chr4_1:17347532-17347551 None:intergenic 20.0%
!! TCATTAAAATACAAAAGTTG+TGG - chr4_1:17347533-17347552 None:intergenic 20.0%
!!! TTTTGTATTTTAATGAGCTA+TGG + chr4_1:17347537-17347556 Msa0538190:intron 20.0%
!! GGTTATTTATATATGTAACA+AGG - chr4_1:17347712-17347731 None:intergenic 20.0%
!! AAATAGATGAAATATCGTTT+CGG + chr4_1:17347753-17347772 Msa0538190:intron 20.0%
!!! ATCTTGTTTCATTATGTAAT+TGG + chr4_1:17347891-17347910 Msa0538190:intron 20.0%
!!! ATACAAAATAACCCAATTTT+GGG - chr4_1:17348084-17348103 None:intergenic 20.0%
!!! AATACAAAATAACCCAATTT+TGG - chr4_1:17348085-17348104 None:intergenic 20.0%
!! TAAAGAACTAATTACAAAGT+TGG - chr4_1:17348792-17348811 None:intergenic 20.0%
!!! TAATAATGGGTAAATACAAA+AGG - chr4_1:17349051-17349070 None:intergenic 20.0%
!!! ATTTTTTCAGTTCTAAGAAA+TGG - chr4_1:17349103-17349122 None:intergenic 20.0%
!! TTCTTAGAACTGAAAAAATA+TGG + chr4_1:17349104-17349123 Msa0538190:intron 20.0%
!!! ACTAAATTTTCTTGTGTTTT+TGG + chr4_1:17349662-17349681 Msa0538190:intron 20.0%
!!! CTAAATTTTCTTGTGTTTTT+GGG + chr4_1:17349663-17349682 Msa0538190:intron 20.0%
!!! TAAATTTTCTTGTGTTTTTG+GGG + chr4_1:17349664-17349683 Msa0538190:intron 20.0%
!! TATTAAATTACCTATTAAGC+AGG + chr4_1:17349978-17349997 Msa0538190:intron 20.0%
!! AAAATATAAGTTCTATGACA+TGG + chr4_1:17350641-17350660 Msa0538190:intron 20.0%
!!! TGCATCTTTTATATTTTCTA+TGG + chr4_1:17350953-17350972 Msa0538190:intron 20.0%
!! CAATAAATACTACTAGTAAA+TGG + chr4_1:17351390-17351409 Msa0538190:intron 20.0%
!!! TTCTGAGAAAATATTTCAAT+TGG + chr4_1:17351454-17351473 Msa0538190:intron 20.0%
!!! TTTAGTAATAGATTTTCTCA+GGG + chr4_1:17351611-17351630 Msa0538190:intron 20.0%
!!! CTTTTAAAGAGATACAAAAA+GGG - chr4_1:17351736-17351755 None:intergenic 20.0%
!!! CTTTTTGTATCTCTTTAAAA+GGG + chr4_1:17351735-17351754 Msa0538190:intron 20.0%
!! AAATGTGTAAACTAGATAAA+AGG - chr4_1:17351786-17351805 None:intergenic 20.0%
!!! TTAGTTCTTATGTTTGAATT+AGG + chr4_1:17351804-17351823 Msa0538190:intron 20.0%
!!! AAAAAGTCAATTTTTACAAG+TGG - chr4_1:17352043-17352062 None:intergenic 20.0%
!! ATATAATTTAAGAGGTAAAC+AGG - chr4_1:17352157-17352176 None:intergenic 20.0%
!!! TGATGGATATAAATGTTTTA+GGG - chr4_1:17352298-17352317 None:intergenic 20.0%
!!! ATGATGGATATAAATGTTTT+AGG - chr4_1:17352299-17352318 None:intergenic 20.0%
!!! AACATTTATATCCATCATTT+TGG + chr4_1:17352301-17352320 Msa0538190:intron 20.0%
!! TTACTTGAATCTAATTCATT+TGG - chr4_1:17352754-17352773 None:intergenic 20.0%
!! TATAGCTATTATATGTATAG+TGG - chr4_1:17353258-17353277 None:intergenic 20.0%
!! GATGTATTAATATATTACCA+CGG - chr4_1:17353350-17353369 None:intergenic 20.0%
!! GACAATTTCGATTTTGAATT+CGG + chr4_1:17345552-17345571 Msa0538190:intron 25.0%
!!! TGAGTTGATTCAAATTGTTA+GGG + chr4_1:17345584-17345603 Msa0538190:intron 25.0%
!! CAGTGGATATTTGAATTTTT+AGG + chr4_1:17345866-17345885 Msa0538190:intron 25.0%
! GAATCAACAACAACATAAAA+AGG - chr4_1:17346134-17346153 None:intergenic 25.0%
!!! TGTTGTTGATTCTTTATAGT+TGG + chr4_1:17346142-17346161 Msa0538190:intron 25.0%
! TGATAAATACTAAGTAGCAT+AGG + chr4_1:17346360-17346379 Msa0538190:intron 25.0%
!!! TTTATTTTTTTAGGTGGAAC+AGG - chr4_1:17346799-17346818 None:intergenic 25.0%
! TCATAAATTCTGATCTGATT+GGG - chr4_1:17347798-17347817 None:intergenic 25.0%
! ATCATAAATTCTGATCTGAT+TGG - chr4_1:17347799-17347818 None:intergenic 25.0%
! TTGGTATGTAAATTATTGAC+TGG + chr4_1:17347910-17347929 Msa0538190:intron 25.0%
! ATAGTTAGACTTCAAAAATG+AGG - chr4_1:17348056-17348075 None:intergenic 25.0%
! TAACTATATCTTCCCAAAAT+TGG + chr4_1:17348069-17348088 Msa0538190:intron 25.0%
! AACTATATCTTCCCAAAATT+GGG + chr4_1:17348070-17348089 Msa0538190:intron 25.0%
!! AAGTTATCATTGCCAATTTT+GGG - chr4_1:17348140-17348159 None:intergenic 25.0%
! ATTTCCTTAACCATGATTTA+TGG + chr4_1:17348893-17348912 Msa0538190:intron 25.0%
!! GGATGTTTCAATTTAGATTT+TGG + chr4_1:17349207-17349226 Msa0538190:CDS 25.0%
! TACATCCTGCTATTATTATT+TGG - chr4_1:17349233-17349252 None:intergenic 25.0%
!!! AAATTGCCCATTTTAAGAAT+TGG + chr4_1:17349343-17349362 Msa0538190:intron 25.0%
! AAGGTTCCAATTCTTAAAAT+GGG - chr4_1:17349352-17349371 None:intergenic 25.0%
! AAACACATACAGAAAAAAGA+AGG - chr4_1:17349371-17349390 None:intergenic 25.0%
! GAGAATATACCTATATTAAG+TGG + chr4_1:17350066-17350085 Msa0538190:CDS 25.0%
! AAGAAAAGAACTCGAAATAT+TGG + chr4_1:17350255-17350274 Msa0538190:CDS 25.0%
! AGAAAAGAACTCGAAATATT+GGG + chr4_1:17350256-17350275 Msa0538190:CDS 25.0%
!! TATAGTTTAACTTTGACGTA+TGG + chr4_1:17350820-17350839 Msa0538190:intron 25.0%
!! AAGGTCTTACTAAAAAGTTT+TGG - chr4_1:17351216-17351235 None:intergenic 25.0%
!!! AATCTTTTGAGAATGAACAA+TGG + chr4_1:17351307-17351326 Msa0538190:CDS 25.0%
!! CTTTAGTAATAGATTTTCTC+AGG + chr4_1:17351610-17351629 Msa0538190:intron 25.0%
!!! CCTTTTAAAGAGATACAAAA+AGG - chr4_1:17351737-17351756 None:intergenic 25.0%
!! CCTTTTTGTATCTCTTTAAA+AGG + chr4_1:17351734-17351753 Msa0538190:intron 25.0%
!!! TTTTTTCAACAATACGAAGA+TGG - chr4_1:17351932-17351951 None:intergenic 25.0%
! AGTTCTGTATTAATACTTCA+TGG + chr4_1:17352128-17352147 Msa0538190:intron 25.0%
! GATTCTATGACTATTATACA+TGG + chr4_1:17352236-17352255 Msa0538190:intron 25.0%
! TGAATTCTATTCCAAAATGA+TGG - chr4_1:17352315-17352334 None:intergenic 25.0%
! AAAAGGGAAAAAATGAAGAT+TGG - chr4_1:17353121-17353140 None:intergenic 25.0%
!!! GACTTTAGAGTAATGTAAAA+GGG - chr4_1:17353137-17353156 None:intergenic 25.0%
!!! TGACTTTAGAGTAATGTAAA+AGG - chr4_1:17353138-17353157 None:intergenic 25.0%
GATGATTATACTTCAAGACT+TGG - chr4_1:17345211-17345230 None:intergenic 30.0%
GTTAGGAAGGAAATGAAAAA+CGG - chr4_1:17345367-17345386 None:intergenic 30.0%
!! GATTTTGAATTCGGTGAATT+TGG + chr4_1:17345561-17345580 Msa0538190:intron 30.0%
!! GTGAGTTGATTCAAATTGTT+AGG + chr4_1:17345583-17345602 Msa0538190:intron 30.0%
TTGTGAATTTATGAAGGTTG+TGG + chr4_1:17345624-17345643 Msa0538190:intron 30.0%
TGTGGAATTGAAGTTGAAAA+TGG + chr4_1:17345642-17345661 Msa0538190:exon 30.0%
AAACGCCAAATATTGTTTGT+AGG + chr4_1:17346434-17346453 Msa0538190:intron 30.0%
TTAGGCCTACAAACAATATT+TGG - chr4_1:17346442-17346461 None:intergenic 30.0%
TATGTCTACATCAAAAAAGC+TGG + chr4_1:17346761-17346780 Msa0538190:intron 30.0%
CTGCAGATAATAGAACAAAT+AGG - chr4_1:17347573-17347592 None:intergenic 30.0%
TATTTCATCTATTTCCAGAG+AGG - chr4_1:17347747-17347766 None:intergenic 30.0%
AATGTATGATGATAGATAGC+AGG + chr4_1:17347839-17347858 Msa0538190:intron 30.0%
!!! GTTGTTGCTTTTTGCTTATA+TGG + chr4_1:17348014-17348033 Msa0538190:intron 30.0%
! CAAGTTATCATTGCCAATTT+TGG - chr4_1:17348141-17348160 None:intergenic 30.0%
AATGAAAAGCCTAATGAATC+TGG + chr4_1:17348174-17348193 Msa0538190:CDS 30.0%
GGAATTATGCAGAAAATGAT+GGG + chr4_1:17348277-17348296 Msa0538190:CDS 30.0%
GCAAGATATATATGAATCAC+TGG + chr4_1:17348464-17348483 Msa0538190:CDS 30.0%
TCAACAAGGACATTATGAAA+GGG - chr4_1:17348534-17348553 None:intergenic 30.0%
ATCAACAAGGACATTATGAA+AGG - chr4_1:17348535-17348554 None:intergenic 30.0%
! ATAATGTCCTTGTTGATGAA+AGG + chr4_1:17348538-17348557 Msa0538190:CDS 30.0%
! TAATGTCCTTGTTGATGAAA+GGG + chr4_1:17348539-17348558 Msa0538190:CDS 30.0%
AACTCTTGATCTGTAATTCT+GGG - chr4_1:17348747-17348766 None:intergenic 30.0%
!! GTTAAGGAAATGTTTTTCAG+AGG - chr4_1:17348884-17348903 None:intergenic 30.0%
CATACCATAAATCATGGTTA+AGG - chr4_1:17348900-17348919 None:intergenic 30.0%
CTTGAACATACCATAAATCA+TGG - chr4_1:17348906-17348925 None:intergenic 30.0%
! ATTCTTTTCCTTTCACATCT+TGG - chr4_1:17349187-17349206 None:intergenic 30.0%
AAGATGTGAAAGGAAAAGAA+TGG + chr4_1:17349186-17349205 Msa0538190:CDS 30.0%
TTTGGCCAAATAATAATAGC+AGG + chr4_1:17349225-17349244 Msa0538190:CDS 30.0%
GAAGGTTCCAATTCTTAAAA+TGG - chr4_1:17349353-17349372 None:intergenic 30.0%
GCTGCAATATAAGCTAAATT+TGG + chr4_1:17349395-17349414 Msa0538190:intron 30.0%
!! GTTTGCTATATGAGCTAAAA+TGG - chr4_1:17349940-17349959 None:intergenic 30.0%
ATTCTCATAAACACCAGAAT+AGG - chr4_1:17350052-17350071 None:intergenic 30.0%
CCAGAATAACCACTTAATAT+AGG - chr4_1:17350078-17350097 None:intergenic 30.0%
CCTATATTAAGTGGTTATTC+TGG + chr4_1:17350075-17350094 Msa0538190:CDS 30.0%
ATATTGGGTCAAAAAGTAAG+AGG + chr4_1:17350271-17350290 Msa0538190:CDS 30.0%
TTCTGATATTTAGATTCACC+AGG - chr4_1:17350620-17350639 None:intergenic 30.0%
AAAATTTGCAACTCCAATAC+TGG - chr4_1:17350705-17350724 None:intergenic 30.0%
GAACTTACTTCTATTCATTC+AGG + chr4_1:17350848-17350867 Msa0538190:intron 30.0%
! TGGAAAGAAGAGTATATTTG+TGG + chr4_1:17350884-17350903 Msa0538190:CDS 30.0%
TTTCAATTGGCAGTAACAAA+TGG + chr4_1:17351467-17351486 Msa0538190:intron 30.0%
! TTTTGCAATATGTCTGCTTA+TGG + chr4_1:17351490-17351509 Msa0538190:intron 30.0%
TTTGCAATATGTCTGCTTAT+GGG + chr4_1:17351491-17351510 Msa0538190:intron 30.0%
CATCAGATCCAAATTTAAGA+GGG - chr4_1:17351668-17351687 None:intergenic 30.0%
! AAAAGGCTTTTGCATTATTC+AGG - chr4_1:17351769-17351788 None:intergenic 30.0%
GGAAAGATATAGTGCATAAA+AGG - chr4_1:17351911-17351930 None:intergenic 30.0%
! AAGTCAATTTTTACAAGTGG+AGG - chr4_1:17352040-17352059 None:intergenic 30.0%
CAATATGACAAGAATGTGAT+GGG + chr4_1:17352068-17352087 Msa0538190:intron 30.0%
TAACAAACGCAACAACAATA+TGG - chr4_1:17352105-17352124 None:intergenic 30.0%
TATATTATGCTGCATGATCA+AGG + chr4_1:17352208-17352227 Msa0538190:intron 30.0%
TTCAAGAAAGTGAATTGTGT+TGG - chr4_1:17353092-17353111 None:intergenic 30.0%
TGCGTAAGCTATAAAATTAC+AGG + chr4_1:17353177-17353196 Msa0538190:three_prime_UTR 30.0%
GTAAGCTATAAAATTACAGG+AGG + chr4_1:17353180-17353199 Msa0538190:three_prime_UTR 30.0%
! AAAATTACAGGAGGTTTGTT+TGG + chr4_1:17353189-17353208 Msa0538190:three_prime_UTR 30.0%
! AAATTACAGGAGGTTTGTTT+GGG + chr4_1:17353190-17353209 Msa0538190:three_prime_UTR 30.0%
TAAGGAGAAGAAAGAAAGAG+AGG - chr4_1:17345262-17345281 None:intergenic 35.0%
AATGGGAAGAAAGAAAGAGA+AGG - chr4_1:17345331-17345350 None:intergenic 35.0%
AGGAAATGAAAAACGGTTAC+CGG - chr4_1:17345360-17345379 None:intergenic 35.0%
CAAAATCGAAATTGTCGTAC+CGG - chr4_1:17345548-17345567 None:intergenic 35.0%
AAATTGTACGGATCAAACAG+TGG + chr4_1:17345849-17345868 Msa0538190:intron 35.0%
AAAGGGTCAAAACGACAAAA+CGG - chr4_1:17346116-17346135 None:intergenic 35.0%
GCATAGGATTTCCCAAAAAA+TGG + chr4_1:17346376-17346395 Msa0538190:intron 35.0%
TAGATATTGTCTGTTGTGCT+AGG - chr4_1:17346657-17346676 None:intergenic 35.0%
CTGAAAACTCACACTTAAAG+CGG - chr4_1:17346727-17346746 None:intergenic 35.0%
AGTTTGGAAAGAGCTTTCTT+TGG + chr4_1:17346853-17346872 Msa0538190:intron 35.0%
TGTAGTCACCAGTAATTGTA+GGG + chr4_1:17347145-17347164 Msa0538190:intron 35.0%
AAGCTCAGAGTGAAAATAGT+AGG + chr4_1:17347214-17347233 Msa0538190:intron 35.0%
!! TAGAGCATGAAGCTATTTCT+TGG - chr4_1:17347369-17347388 None:intergenic 35.0%
ATGTTCCATGCAAAAGAATC+TGG + chr4_1:17347451-17347470 Msa0538190:CDS 35.0%
AAGTTGTGGGTAAAGAAAAG+TGG - chr4_1:17347519-17347538 None:intergenic 35.0%
CCAGAGAGGTAAATCATAAA+TGG - chr4_1:17347733-17347752 None:intergenic 35.0%
CCATTTATGATTTACCTCTC+TGG + chr4_1:17347730-17347749 Msa0538190:intron 35.0%
AATCGTGCTCTTCCATATAT+AGG + chr4_1:17347989-17348008 Msa0538190:intron 35.0%
AAGCAACAACCTCCTATATA+TGG - chr4_1:17348004-17348023 None:intergenic 35.0%
TAACTGTATCCTCCCAAAAT+TGG + chr4_1:17348125-17348144 Msa0538190:intron 35.0%
! TTATCATTGCCAATTTTGGG+AGG - chr4_1:17348137-17348156 None:intergenic 35.0%
!! TTTGCTGTTCCAGATTCATT+AGG - chr4_1:17348186-17348205 None:intergenic 35.0%
TGGCTAACCAATTAAATGTG+AGG + chr4_1:17348241-17348260 Msa0538190:CDS 35.0%
GGCTAACCAATTAAATGTGA+GGG + chr4_1:17348242-17348261 Msa0538190:CDS 35.0%
GCTAACCAATTAAATGTGAG+GGG + chr4_1:17348243-17348262 Msa0538190:CDS 35.0%
GGGAATTATGCAGAAAATGA+TGG + chr4_1:17348276-17348295 Msa0538190:CDS 35.0%
! CAAACCTCACAATGTTGATT+TGG + chr4_1:17348314-17348333 Msa0538190:CDS 35.0%
! TCTGGTTTGATTTCTCTAGA+AGG - chr4_1:17348345-17348364 None:intergenic 35.0%
CAATTTCATCGTGAGTCAAA+TGG + chr4_1:17348408-17348427 Msa0538190:CDS 35.0%
TTATGAAAGGGATTTGGCAA+AGG - chr4_1:17348522-17348541 None:intergenic 35.0%
AGGACATTATGAAAGGGATT+TGG - chr4_1:17348528-17348547 None:intergenic 35.0%
TTTGTTCCCTTTCATCAACA+AGG - chr4_1:17348548-17348567 None:intergenic 35.0%
! ATCTTTTACCTAAACCTCCT+AGG + chr4_1:17348610-17348629 Msa0538190:CDS 35.0%
CAACTCTTGATCTGTAATTC+TGG - chr4_1:17348748-17348767 None:intergenic 35.0%
TCAAGAGTTGCAGCAAATAT+CGG + chr4_1:17348758-17348777 Msa0538190:CDS 35.0%
! CTAAGCATCTTTTCAAAGAG+TGG - chr4_1:17348948-17348967 None:intergenic 35.0%
! ATTACTTCAGCACATGCTTT+TGG - chr4_1:17349008-17349027 None:intergenic 35.0%
GAAAAAATATGGCATTGTGC+AGG + chr4_1:17349115-17349134 Msa0538190:intron 35.0%
!! AGCAGGATGTATGTTTTAGA+AGG + chr4_1:17349242-17349261 Msa0538190:CDS 35.0%
!!! GCAGGATGTATGTTTTAGAA+GGG + chr4_1:17349243-17349262 Msa0538190:CDS 35.0%
!!! CAGGATGTATGTTTTAGAAG+GGG + chr4_1:17349244-17349263 Msa0538190:CDS 35.0%
AGTTGCATAGACTGAATACA+GGG - chr4_1:17349275-17349294 None:intergenic 35.0%
!!! GATACTGGTATGTTTTAGTG+AGG + chr4_1:17349305-17349324 Msa0538190:intron 35.0%
! ATTTGTTAGCATATTGAGCC+AGG - chr4_1:17349486-17349505 None:intergenic 35.0%
!!! TTTTCTTGTGTTTTTGGGGA+TGG + chr4_1:17349668-17349687 Msa0538190:intron 35.0%
!!! TTTCTTGTGTTTTTGGGGAT+GGG + chr4_1:17349669-17349688 Msa0538190:intron 35.0%
AACAAATTCTGCTTCAGTAC+AGG + chr4_1:17349908-17349927 Msa0538190:CDS 35.0%
GGAAAAGTTTCCTGCTTAAT+AGG - chr4_1:17349991-17350010 None:intergenic 35.0%
TCACTTGAATGAGAACCATT+GGG - chr4_1:17350024-17350043 None:intergenic 35.0%
TTCACTTGAATGAGAACCAT+TGG - chr4_1:17350025-17350044 None:intergenic 35.0%
TCAAGTGAAACTTCCTATTC+TGG + chr4_1:17350036-17350055 Msa0538190:CDS 35.0%
!!! TTTCGAGTTCTTTTCTTCTC+AGG - chr4_1:17350252-17350271 None:intergenic 35.0%
ATACTCTTCTTTCCAAACAC+AGG - chr4_1:17350879-17350898 None:intergenic 35.0%
ATATTTGTGGTACGATCTAC+TGG + chr4_1:17350897-17350916 Msa0538190:CDS 35.0%
TATTTGTGGTACGATCTACT+GGG + chr4_1:17350898-17350917 Msa0538190:CDS 35.0%
AGTGTGATAGTTGCCAAAAA+TGG + chr4_1:17351085-17351104 Msa0538190:CDS 35.0%
TCCCAATGAATTGAATCCAA+GGG + chr4_1:17351276-17351295 Msa0538190:CDS 35.0%
TCCCTTGGATTCAATTCATT+GGG - chr4_1:17351280-17351299 None:intergenic 35.0%
TTCCCTTGGATTCAATTCAT+TGG - chr4_1:17351281-17351300 None:intergenic 35.0%
AAAAGATTATCCAGTTCCCT+TGG - chr4_1:17351295-17351314 None:intergenic 35.0%
! GTAACTATAAAAGCATAGCG+TGG - chr4_1:17351363-17351382 None:intergenic 35.0%
GTTGACATTACACTAAAGCT+AGG + chr4_1:17351428-17351447 Msa0538190:intron 35.0%
GCATCAGATCCAAATTTAAG+AGG - chr4_1:17351669-17351688 None:intergenic 35.0%
GTTGGTGTAGAAATTCAGAA+AGG + chr4_1:17351846-17351865 Msa0538190:intron 35.0%
CAGAAAGGAAAAATATGCAC+AGG + chr4_1:17351861-17351880 Msa0538190:intron 35.0%
AAGGAAAAATATGCACAGGA+TGG + chr4_1:17351865-17351884 Msa0538190:intron 35.0%
AGACTGTTAGAAGATGTACT+AGG - chr4_1:17351995-17352014 None:intergenic 35.0%
CCATCACATTCTTGTCATAT+TGG - chr4_1:17352070-17352089 None:intergenic 35.0%
CCAATATGACAAGAATGTGA+TGG + chr4_1:17352067-17352086 Msa0538190:intron 35.0%
GCAGCATAATATACGATCAT+GGG - chr4_1:17352201-17352220 None:intergenic 35.0%
TGCAGCATAATATACGATCA+TGG - chr4_1:17352202-17352221 None:intergenic 35.0%
! CTTTTTCTTTCGCATCATCA+GGG - chr4_1:17352599-17352618 None:intergenic 35.0%
CTCAGAAAAATCAGCAATCA+TGG + chr4_1:17352647-17352666 Msa0538190:CDS 35.0%
AGAAAAATCAGCAATCATGG+AGG + chr4_1:17352650-17352669 Msa0538190:CDS 35.0%
!! TTTAACTCCAGTTGATGGTT+CGG + chr4_1:17352711-17352730 Msa0538190:CDS 35.0%
ATTCAAGTCTAATTGTCCCT+TGG - chr4_1:17352800-17352819 None:intergenic 35.0%
ATTAGACTTGAATTGCCAAC+CGG + chr4_1:17352807-17352826 Msa0538190:CDS 35.0%
! TAGAAAGACCATTTTGCTTC+AGG - chr4_1:17352915-17352934 None:intergenic 35.0%
AAATTCAGCTTCAAATGTGC+AGG + chr4_1:17352957-17352976 Msa0538190:CDS 35.0%
TAGTGGAAAAATTCGCAGTT+AGG - chr4_1:17353241-17353260 None:intergenic 35.0%
! AATGCTGAAGCTTGTGTTTT+AGG + chr4_1:17353278-17353297 Msa0538190:three_prime_UTR 35.0%
GAAGAAAGAAAGAGAAGGTG+AGG - chr4_1:17345326-17345345 None:intergenic 40.0%
! CTTTCTTCCCATTTTCTCTC+CGG + chr4_1:17345338-17345357 Msa0538190:five_prime_UTR 40.0%
AGTTGGTTATGGAGATAAGG+CGG - chr4_1:17345480-17345499 None:intergenic 40.0%
CACAGTTGGTTATGGAGATA+AGG - chr4_1:17345483-17345502 None:intergenic 40.0%
TGTTGCATGAACGTTGTTTG+TGG + chr4_1:17345673-17345692 Msa0538190:CDS 40.0%
AAAGGTTGGATTCTTCGATC+CGG + chr4_1:17345721-17345740 Msa0538190:CDS 40.0%
ACATAGATCGGCAAATTCAC+CGG - chr4_1:17345743-17345762 None:intergenic 40.0%
ATGTATGTAGTTGCGGTTGT+TGG + chr4_1:17346206-17346225 Msa0538190:intron 40.0%
!!! CATAGGAGTGTGCTTTTTCA+AGG + chr4_1:17346492-17346511 Msa0538190:intron 40.0%
ATTGTCCATAAGCAAAGCTC+TGG - chr4_1:17346564-17346583 None:intergenic 40.0%
AGAGCTTTGCTTATGGACAA+TGG + chr4_1:17346563-17346582 Msa0538190:intron 40.0%
GAGCTTTGCTTATGGACAAT+GGG + chr4_1:17346564-17346583 Msa0538190:intron 40.0%
TATGGACAATGGGATTCGAT+TGG + chr4_1:17346574-17346593 Msa0538190:intron 40.0%
! AGTTAGCCGAACATTTTCTG+TGG + chr4_1:17346676-17346695 Msa0538190:intron 40.0%
GGGTAACCACAGAAAATGTT+CGG - chr4_1:17346685-17346704 None:intergenic 40.0%
ATGAACCGTCAGATCATGAT+CGG - chr4_1:17347037-17347056 None:intergenic 40.0%
GTGTAGTCACCAGTAATTGT+AGG + chr4_1:17347144-17347163 Msa0538190:intron 40.0%
CCAGTAATTGTAGGGAATCT+CGG + chr4_1:17347153-17347172 Msa0538190:intron 40.0%
TCATGCTCTAACTCTTACTC+TGG + chr4_1:17347379-17347398 Msa0538190:intron 40.0%
TCCATGCAAAAGAATCTGGT+TGG + chr4_1:17347455-17347474 Msa0538190:CDS 40.0%
! TCCAACCAGATTCTTTTGCA+TGG - chr4_1:17347459-17347478 None:intergenic 40.0%
TTGAAGCAACACATCCACAA+TGG - chr4_1:17347601-17347620 None:intergenic 40.0%
CAGCTTGAAATACTTGACAC+TGG + chr4_1:17347626-17347645 Msa0538190:CDS 40.0%
CTTGAAATACTTGACACTGG+TGG + chr4_1:17347629-17347648 Msa0538190:CDS 40.0%
ATTACCTGTGCAAGTACTTC+AGG + chr4_1:17347662-17347681 Msa0538190:CDS 40.0%
GCATACCCCTCACATTTAAT+TGG - chr4_1:17348251-17348270 None:intergenic 40.0%
! ATGCAGAAAATGATGGGATG+AGG + chr4_1:17348283-17348302 Msa0538190:CDS 40.0%
! AAAATGATGGGATGAGGTAC+TGG + chr4_1:17348289-17348308 Msa0538190:CDS 40.0%
CCATCCAAATCAACATTGTG+AGG - chr4_1:17348321-17348340 None:intergenic 40.0%
!! CCTCACAATGTTGATTTGGA+TGG + chr4_1:17348318-17348337 Msa0538190:CDS 40.0%
TTACCCTCTGTTGGAGAATT+TGG + chr4_1:17348369-17348388 Msa0538190:CDS 40.0%
CTTCCAAATTCTCCAACAGA+GGG - chr4_1:17348375-17348394 None:intergenic 40.0%
GTGAGTCAAATGGTTCATCT+AGG + chr4_1:17348418-17348437 Msa0538190:CDS 40.0%
! TCAAATGGTTCATCTAGGAC+TGG + chr4_1:17348423-17348442 Msa0538190:CDS 40.0%
AATGTCACCTCCACTTCTAT+TGG + chr4_1:17348572-17348591 Msa0538190:CDS 40.0%
TTTCCCAGATACGTATAGCA+AGG + chr4_1:17348673-17348692 Msa0538190:CDS 40.0%
CAAGAGTTGCAGCAAATATC+GGG + chr4_1:17348759-17348778 Msa0538190:CDS 40.0%
! CTTTTCAAAGAGTGGCACAA+TGG - chr4_1:17348940-17348959 None:intergenic 40.0%
TTCACATCTTGGATACGCAA+AGG - chr4_1:17349176-17349195 None:intergenic 40.0%
TTGCGTATCCAAGATGTGAA+AGG + chr4_1:17349176-17349195 Msa0538190:CDS 40.0%
TTGCATAGACTGAATACAGG+GGG - chr4_1:17349273-17349292 None:intergenic 40.0%
GTTGCATAGACTGAATACAG+GGG - chr4_1:17349274-17349293 None:intergenic 40.0%
CAGTTGCATAGACTGAATAC+AGG - chr4_1:17349276-17349295 None:intergenic 40.0%
TCAGAATCTTTGCAAGTTCC+TGG + chr4_1:17349465-17349484 Msa0538190:intron 40.0%
TGCAGTAACATTTAGCCGTA+TGG + chr4_1:17349848-17349867 Msa0538190:intron 40.0%
CCATTATAAGTTTCCCCTCA+GGG - chr4_1:17349875-17349894 None:intergenic 40.0%
CCTGAGGGGAAACTTATAAT+GGG + chr4_1:17349873-17349892 Msa0538190:CDS 40.0%
CTGAGGGGAAACTTATAATG+GGG + chr4_1:17349874-17349893 Msa0538190:CDS 40.0%
! GGAAACTTATAATGGGGTTC+AGG + chr4_1:17349880-17349899 Msa0538190:CDS 40.0%
! ACTTATAATGGGGTTCAGGA+AGG + chr4_1:17349884-17349903 Msa0538190:CDS 40.0%
TTTCCGTCTAATATGCCCAA+TGG + chr4_1:17350006-17350025 Msa0538190:CDS 40.0%
GAACCATTGGGCATATTAGA+CGG - chr4_1:17350012-17350031 None:intergenic 40.0%
!!! AACCCTTTTGAGACTGAAGA+AGG - chr4_1:17350101-17350120 None:intergenic 40.0%
! ACTTTCTAGAGAGCGCATTT+AGG - chr4_1:17350137-17350156 None:intergenic 40.0%
! TAAATGCGCTCTCTAGAAAG+TGG + chr4_1:17350136-17350155 Msa0538190:CDS 40.0%
TCTAGAAAGTGGAACTCAGT+TGG + chr4_1:17350147-17350166 Msa0538190:CDS 40.0%
ACTGGAGCTGAAACTTACTT+GGG + chr4_1:17350317-17350336 Msa0538190:CDS 40.0%
ACAACACTTGGCTTAACTTC+TGG - chr4_1:17350372-17350391 None:intergenic 40.0%
TACATGCATGCATGATAGAG+AGG + chr4_1:17350484-17350503 Msa0538190:intron 40.0%
ACATGCATGCATGATAGAGA+GGG + chr4_1:17350485-17350504 Msa0538190:intron 40.0%
ATAGAGAGGGGCGAAAATTA+TGG + chr4_1:17350498-17350517 Msa0538190:intron 40.0%
! TATCCAAAGCTTTTCAGTCC+TGG + chr4_1:17350599-17350618 Msa0538190:intron 40.0%
AAGTTAATCACTGCTACGTG+TGG - chr4_1:17350758-17350777 None:intergenic 40.0%
TTGGAGTATGATTGTACCAC+AGG + chr4_1:17351043-17351062 Msa0538190:intron 40.0%
GTGATAGTTGCCAAAAATGG+CGG + chr4_1:17351088-17351107 Msa0538190:CDS 40.0%
ATGTACTTATTCCCCCTAAG+TGG + chr4_1:17351124-17351143 Msa0538190:CDS 40.0%
! GACGTGTATGGAGAACTTTT+GGG + chr4_1:17351146-17351165 Msa0538190:CDS 40.0%
!!! AGAACTTTTGGGATCAAAGC+AGG + chr4_1:17351157-17351176 Msa0538190:CDS 40.0%
CTCCCAATGAATTGAATCCA+AGG + chr4_1:17351275-17351294 Msa0538190:CDS 40.0%
TGAATTGAATCCAAGGGAAC+TGG + chr4_1:17351282-17351301 Msa0538190:CDS 40.0%
TGATAGATTGGGGTTCCAAA+TGG + chr4_1:17351638-17351657 Msa0538190:intron 40.0%
GATAGATTGGGGTTCCAAAT+GGG + chr4_1:17351639-17351658 Msa0538190:intron 40.0%
ATTTAAGAGGGAAGCCCATT+TGG - chr4_1:17351656-17351675 None:intergenic 40.0%
ATGGGCTTCCCTCTTAAATT+TGG + chr4_1:17351657-17351676 Msa0538190:intron 40.0%
GAATTTCTACACCAACCGTA+CGG - chr4_1:17351842-17351861 None:intergenic 40.0%
! TATGACAAGAATGTGATGGG+TGG + chr4_1:17352071-17352090 Msa0538190:intron 40.0%
TTATGCTGCATGATCAAGGA+TGG + chr4_1:17352212-17352231 Msa0538190:intron 40.0%
CAAGAAACAAAGACAAGCAG+CGG + chr4_1:17352333-17352352 Msa0538190:CDS 40.0%
TGATGCTTTAGCAAATGCTG+CGG + chr4_1:17352396-17352415 Msa0538190:CDS 40.0%
!!! GCATCATCAGGGTTTTAAAC+CGG - chr4_1:17352588-17352607 None:intergenic 40.0%
!! GCTTTTTCTTTCGCATCATC+AGG - chr4_1:17352600-17352619 None:intergenic 40.0%
GTCTACTTCTGATTCATCCT+TGG - chr4_1:17352677-17352696 None:intergenic 40.0%
AACTGGAGTTAAATGTCGAG+AGG - chr4_1:17352704-17352723 None:intergenic 40.0%
CGACATTTAACTCCAGTTGA+TGG + chr4_1:17352706-17352725 Msa0538190:CDS 40.0%
TTCAAGTAACCAAGACCAAG+TGG + chr4_1:17352765-17352784 Msa0538190:CDS 40.0%
GAGACATACCTGAAGCAAAA+TGG + chr4_1:17352904-17352923 Msa0538190:CDS 40.0%
ACAGTCCTGAAGAGAATAGT+GGG + chr4_1:17353055-17353074 Msa0538190:CDS 40.0%
GGGAAAAAATGAAGATTGGC+AGG - chr4_1:17353117-17353136 None:intergenic 40.0%
AAGCGTGTGCATGCAGAATA+AGG - chr4_1:17345280-17345299 None:intergenic 45.0%
ACGGTTACCGGAGAGAAAAT+GGG - chr4_1:17345348-17345367 None:intergenic 45.0%
AACGGTTACCGGAGAGAAAA+TGG - chr4_1:17345349-17345368 None:intergenic 45.0%
TGAACGGAGGAGAAGAAGTT+AGG - chr4_1:17345384-17345403 None:intergenic 45.0%
TTTGCATTTGTGTTGCAGCG+TGG - chr4_1:17345418-17345437 None:intergenic 45.0%
TCTCCATAACCAACTGTGAC+CGG + chr4_1:17345485-17345504 Msa0538190:five_prime_UTR 45.0%
TAACGTCACCGGAAGTTTGA+GGG - chr4_1:17345516-17345535 None:intergenic 45.0%
GGAATCAAAGCTAACGTCAC+CGG - chr4_1:17345527-17345546 None:intergenic 45.0%
!! GGTGACGTTAGCTTTGATTC+CGG + chr4_1:17345526-17345545 Msa0538190:five_prime_UTR 45.0%
GCCGATCTATGTGATAAGTG+CGG + chr4_1:17345751-17345770 Msa0538190:CDS 45.0%
CCCGCACTTATCACATAGAT+CGG - chr4_1:17345755-17345774 None:intergenic 45.0%
CCGATCTATGTGATAAGTGC+GGG + chr4_1:17345752-17345771 Msa0538190:CDS 45.0%
! TGCGGTTGTTGGTAAGATTG+TGG + chr4_1:17346217-17346236 Msa0538190:intron 45.0%
! TGTTGGTAAGATTGTGGCTG+CGG + chr4_1:17346223-17346242 Msa0538190:intron 45.0%
!! ACCACTAGCTCTGTTGAGTT+AGG - chr4_1:17346460-17346479 None:intergenic 45.0%
!! ATGGACTAGCCCATCGAAAT+TGG - chr4_1:17346541-17346560 None:intergenic 45.0%
TCCATCCAGAGCTTTGCTTA+TGG + chr4_1:17346556-17346575 Msa0538190:intron 45.0%
!! TCCATAAGCAAAGCTCTGGA+TGG - chr4_1:17346560-17346579 None:intergenic 45.0%
ATTGGACCCCTCAGATTAGT+CGG + chr4_1:17346592-17346611 Msa0538190:intron 45.0%
CTAAGACCGACTAATCTGAG+GGG - chr4_1:17346601-17346620 None:intergenic 45.0%
CCTAAGACCGACTAATCTGA+GGG - chr4_1:17346602-17346621 None:intergenic 45.0%
! CCTCAGATTAGTCGGTCTTA+GGG + chr4_1:17346600-17346619 Msa0538190:intron 45.0%
! ACATTTTCTGTGGTTACCCC+AGG + chr4_1:17346686-17346705 Msa0538190:intron 45.0%
ACCATCCGATCATGATCTGA+CGG + chr4_1:17347029-17347048 Msa0538190:intron 45.0%
CCGAGATTCCCTACAATTAC+TGG - chr4_1:17347156-17347175 None:intergenic 45.0%
TCACAAGACTCGTGGGTATA+AGG - chr4_1:17347180-17347199 None:intergenic 45.0%
AACCATGTCACAAGACTCGT+GGG - chr4_1:17347187-17347206 None:intergenic 45.0%
AAACCATGTCACAAGACTCG+TGG - chr4_1:17347188-17347207 None:intergenic 45.0%
! TGGAGAGAGTGTACTTCATG+TGG + chr4_1:17347475-17347494 Msa0538190:CDS 45.0%
AGAGTGTACTTCATGTGGCA+AGG + chr4_1:17347480-17347499 Msa0538190:CDS 45.0%
! AAGTCCTGAAGTACTTGCAC+AGG - chr4_1:17347669-17347688 None:intergenic 45.0%
ACAAGGTGAAGTGAGCTTAC+AGG - chr4_1:17347695-17347714 None:intergenic 45.0%
CGTGCTCTTCCATATATAGG+AGG + chr4_1:17347992-17348011 Msa0538190:intron 45.0%
! AATGTGAGGGGTATGCAAGT+TGG + chr4_1:17348255-17348274 Msa0538190:CDS 45.0%
! ATGTGAGGGGTATGCAAGTT+GGG + chr4_1:17348256-17348275 Msa0538190:CDS 45.0%
CCAACAGAGGGTAAAACTTC+TGG - chr4_1:17348363-17348382 None:intergenic 45.0%
! CCAGAAGTTTTACCCTCTGT+TGG + chr4_1:17348360-17348379 Msa0538190:CDS 45.0%
GCTTCCAAATTCTCCAACAG+AGG - chr4_1:17348376-17348395 None:intergenic 45.0%
ATTTGGCAAAGGAGCGGTAA+GGG - chr4_1:17348511-17348530 None:intergenic 45.0%
AAAGGGATTTGGCAAAGGAG+CGG - chr4_1:17348517-17348536 None:intergenic 45.0%
GATCTAGACGCCAATAGAAG+TGG - chr4_1:17348585-17348604 None:intergenic 45.0%
TCTAAGCCTGGAGATAGAGT+TGG - chr4_1:17348636-17348655 None:intergenic 45.0%
ACTCTATCTCCAGGCTTAGA+AGG + chr4_1:17348636-17348655 Msa0538190:CDS 45.0%
CTTAGAAGGAAACACAGGCA+TGG + chr4_1:17348650-17348669 Msa0538190:CDS 45.0%
! AGGCCTTGCTATACGTATCT+GGG - chr4_1:17348679-17348698 None:intergenic 45.0%
ATCAGTTGCTTCCGCGATAT+TGG + chr4_1:17348721-17348740 Msa0538190:CDS 45.0%
GTAATTCTGGGCCAATATCG+CGG - chr4_1:17348735-17348754 None:intergenic 45.0%
TTCAAAGAGTGGCACAATGG+TGG - chr4_1:17348937-17348956 None:intergenic 45.0%
ATGCTTAGTGCAAGTGATGC+TGG + chr4_1:17348960-17348979 Msa0538190:CDS 45.0%
CATCTTGGATACGCAAAGGA+AGG - chr4_1:17349172-17349191 None:intergenic 45.0%
CCCTGAGGGGAAACTTATAA+TGG + chr4_1:17349872-17349891 Msa0538190:CDS 45.0%
CCCATTATAAGTTTCCCCTC+AGG - chr4_1:17349876-17349895 None:intergenic 45.0%
TGGCCTTCTTCAGTCTCAAA+AGG + chr4_1:17350095-17350114 Msa0538190:CDS 45.0%
GGCCTTCTTCAGTCTCAAAA+GGG + chr4_1:17350096-17350115 Msa0538190:CDS 45.0%
! TCTAGAGAGCGCATTTAGGT+GGG - chr4_1:17350133-17350152 None:intergenic 45.0%
! TTCTAGAGAGCGCATTTAGG+TGG - chr4_1:17350134-17350153 None:intergenic 45.0%
!! GAGGTTGCTTATTGATAGCG+AGG + chr4_1:17350290-17350309 Msa0538190:CDS 45.0%
!! TATTGATAGCGAGGATGCAC+TGG + chr4_1:17350299-17350318 Msa0538190:CDS 45.0%
CACTGGAGCTGAAACTTACT+TGG + chr4_1:17350316-17350335 Msa0538190:CDS 45.0%
GCTGAAACTTACTTGGGAAG+AGG + chr4_1:17350323-17350342 Msa0538190:CDS 45.0%
ACACTTGGCTTAACTTCTGG+AGG - chr4_1:17350369-17350388 None:intergenic 45.0%
TCCTCGATCATGACAACACT+TGG - chr4_1:17350384-17350403 None:intergenic 45.0%
CATGCATGCATGATAGAGAG+GGG + chr4_1:17350486-17350505 Msa0538190:intron 45.0%
TCACCAGGACTGAAAAGCTT+TGG - chr4_1:17350605-17350624 None:intergenic 45.0%
GACATGGACTTTACCTGCAT+TGG + chr4_1:17350657-17350676 Msa0538190:intron 45.0%
! GCGTATTGATAGACCAATGC+AGG - chr4_1:17350673-17350692 None:intergenic 45.0%
ACGCATGCACTAACCAGTAT+TGG + chr4_1:17350689-17350708 Msa0538190:intron 45.0%
CTCTTCTTTCCAAACACAGG+AGG - chr4_1:17350876-17350895 None:intergenic 45.0%
! CCAAAAATGGCGGAAGTTAC+CGG + chr4_1:17351098-17351117 Msa0538190:CDS 45.0%
GGGGGAATAAGTACATCAAC+CGG - chr4_1:17351120-17351139 None:intergenic 45.0%
TCTCCATACACGTCCACTTA+GGG - chr4_1:17351140-17351159 None:intergenic 45.0%
TTCTCCATACACGTCCACTT+AGG - chr4_1:17351141-17351160 None:intergenic 45.0%
! GGACGTGTATGGAGAACTTT+TGG + chr4_1:17351145-17351164 Msa0538190:CDS 45.0%
GATCAAAGCAGGTGAGTAGA+AGG + chr4_1:17351168-17351187 Msa0538190:intron 45.0%
ACAGCATCGCATAAGCACAA+AGG - chr4_1:17351235-17351254 None:intergenic 45.0%
TCTCAGGGACACTGATAGAT+TGG + chr4_1:17351626-17351645 Msa0538190:intron 45.0%
CTCAGGGACACTGATAGATT+GGG + chr4_1:17351627-17351646 Msa0538190:intron 45.0%
TCAGGGACACTGATAGATTG+GGG + chr4_1:17351628-17351647 Msa0538190:intron 45.0%
AGGAGATTTGACAGTCCGTA+CGG + chr4_1:17351824-17351843 Msa0538190:intron 45.0%
TTAGCAAATGCTGCGGTACT+TGG + chr4_1:17352403-17352422 Msa0538190:CDS 45.0%
! TGTCTTGTTGTGGTCAACAC+TGG - chr4_1:17352457-17352476 None:intergenic 45.0%
TGGCTGGATACAGACAATAC+AGG - chr4_1:17352503-17352522 None:intergenic 45.0%
CAGACATTACACGTGCATGT+AGG - chr4_1:17352550-17352569 None:intergenic 45.0%
TCTGCATGACAGTTAAACGC+CGG + chr4_1:17352566-17352585 Msa0538190:CDS 45.0%
TCATTCTCCGAACCATCAAC+TGG - chr4_1:17352721-17352740 None:intergenic 45.0%
GTTCGGAGAATGAAGCAAGA+GGG + chr4_1:17352728-17352747 Msa0538190:CDS 45.0%
ACTTGAATTGCCAACCGGAT+CGG + chr4_1:17352812-17352831 Msa0538190:CDS 45.0%
! GTCATCATGCTCAGAGTGTT+TGG - chr4_1:17352856-17352875 None:intergenic 45.0%
TGAAGAAGCAAATCTCCCGT+TGG + chr4_1:17352882-17352901 Msa0538190:CDS 45.0%
TGCTTCAGGTATGTCTCCAA+CGG - chr4_1:17352901-17352920 None:intergenic 45.0%
ACAGACAACCAATGAGAGTG+AGG + chr4_1:17352981-17353000 Msa0538190:CDS 45.0%
CAGACAACCAATGAGAGTGA+GGG + chr4_1:17352982-17353001 Msa0538190:CDS 45.0%
TTGTCTTCCCTCACTCTCAT+TGG - chr4_1:17352992-17353011 None:intergenic 45.0%
GAGTGAGGGAAGACAAAATG+AGG + chr4_1:17352996-17353015 Msa0538190:CDS 45.0%
TGCTTCTGCAGTTCATGAAC+AGG + chr4_1:17353029-17353048 Msa0538190:CDS 45.0%
GACAGTCCTGAAGAGAATAG+TGG + chr4_1:17353054-17353073 Msa0538190:CDS 45.0%
TCTTGCCCACTATTCTCTTC+AGG - chr4_1:17353063-17353082 None:intergenic 45.0%
! TTAGGTTGTACACCAGTGTG+AGG + chr4_1:17353296-17353315 Msa0538190:three_prime_UTR 45.0%
! AGTAAAGCATCTTCTTGCCG+TGG + chr4_1:17353330-17353349 Msa0538190:three_prime_UTR 45.0%
!!! AATTTATGATTTTTTTTTTT+TGG + chr4_1:17347809-17347828 Msa0538190:intron 5.0%
!!! ATTTATGATTTTTTTTTTTT+GGG + chr4_1:17347810-17347829 Msa0538190:intron 5.0%
!! ATAAAAATAACTATAATAAT+GGG - chr4_1:17349064-17349083 None:intergenic 5.0%
!! AATAAAAATAACTATAATAA+TGG - chr4_1:17349065-17349084 None:intergenic 5.0%
CGGAGGAGAAGAAGTTAGGA+AGG - chr4_1:17345380-17345399 None:intergenic 50.0%
TGGTTATGGAGATAAGGCGG+CGG - chr4_1:17345477-17345496 None:intergenic 50.0%
GTTCCGGTCACAGTTGGTTA+TGG - chr4_1:17345491-17345510 None:intergenic 50.0%
CGGAAGTTTGAGGGAAGTTC+CGG - chr4_1:17345507-17345526 None:intergenic 50.0%
CGGAACTTCCCTCAAACTTC+CGG + chr4_1:17345505-17345524 Msa0538190:five_prime_UTR 50.0%
CTAACGTCACCGGAAGTTTG+AGG - chr4_1:17345517-17345536 None:intergenic 50.0%
! GTGGAACCTCTACGTCGATT+CGG + chr4_1:17345692-17345711 Msa0538190:CDS 50.0%
GGGTCAAAACGACAAAACGG+TGG - chr4_1:17346113-17346132 None:intergenic 50.0%
GCCTAACTCAACAGAGCTAG+TGG + chr4_1:17346456-17346475 Msa0538190:intron 50.0%
! GTGGTGATGACGTGAGACAT+AGG + chr4_1:17346475-17346494 Msa0538190:intron 50.0%
TAGCCCATCGAAATTGGCAC+CGG - chr4_1:17346535-17346554 None:intergenic 50.0%
! CCCTCAGATTAGTCGGTCTT+AGG + chr4_1:17346599-17346618 Msa0538190:intron 50.0%
CCCTAAGACCGACTAATCTG+AGG - chr4_1:17346603-17346622 None:intergenic 50.0%
! CAGATTAGTCGGTCTTAGGG+CGG + chr4_1:17346603-17346622 Msa0538190:intron 50.0%
TTTCTGTGGTTACCCCAGGT+CGG + chr4_1:17346690-17346709 Msa0538190:intron 50.0%
ACACTTAAAGCGGAGATCCC+AGG - chr4_1:17346717-17346736 None:intergenic 50.0%
TGCATGCAATCAGTGACTGC+AGG - chr4_1:17346992-17347011 None:intergenic 50.0%
CATGCATTCACAGTGACTGC+AGG + chr4_1:17347006-17347025 Msa0538190:intron 50.0%
ACCGTCAGATCATGATCGGA+TGG - chr4_1:17347033-17347052 None:intergenic 50.0%
TGAACAGTCCGATCTCGATC+AGG + chr4_1:17347111-17347130 Msa0538190:intron 50.0%
! TACCCACGAGTCTTGTGACA+TGG + chr4_1:17347182-17347201 Msa0538190:intron 50.0%
TATCTGCAGCGTCTCCATTG+TGG + chr4_1:17347584-17347603 Msa0538190:intron 50.0%
TTCCCAGCAGTGCATATCTC+TGG + chr4_1:17348221-17348240 Msa0538190:CDS 50.0%
AGCCAGAGATATGCACTGCT+GGG - chr4_1:17348226-17348245 None:intergenic 50.0%
TAGCCAGAGATATGCACTGC+TGG - chr4_1:17348227-17348246 None:intergenic 50.0%
GATTTGGCAAAGGAGCGGTA+AGG - chr4_1:17348512-17348531 None:intergenic 50.0%
CTAGACGCCAATAGAAGTGG+AGG - chr4_1:17348582-17348601 None:intergenic 50.0%
! AGAGTTGGCCTAGGAGGTTT+AGG - chr4_1:17348621-17348640 None:intergenic 50.0%
CCTGTGTTTCCTTCTAAGCC+TGG - chr4_1:17348648-17348667 None:intergenic 50.0%
CCAGGCTTAGAAGGAAACAC+AGG + chr4_1:17348645-17348664 Msa0538190:CDS 50.0%
! GAGGCCTTGCTATACGTATC+TGG - chr4_1:17348680-17348699 None:intergenic 50.0%
CTGATTCCTTCCTCGTCCTT+CGG - chr4_1:17348706-17348725 None:intergenic 50.0%
GCAAGTGATGCTGGTCGAAT+TGG + chr4_1:17348969-17348988 Msa0538190:CDS 50.0%
!! CCTCAGGTTGAGAGATAGGA+GGG - chr4_1:17349148-17349167 None:intergenic 50.0%
CCTCCTATCTCTCAACCTGA+GGG + chr4_1:17349146-17349165 Msa0538190:CDS 50.0%
CAGTCTATGCAACTGCAAGC+TGG + chr4_1:17349281-17349300 Msa0538190:CDS 50.0%
ATTTAGCCGTATGGACCCTG+AGG + chr4_1:17349857-17349876 Msa0538190:CDS 50.0%
TTTAGCCGTATGGACCCTGA+GGG + chr4_1:17349858-17349877 Msa0538190:CDS 50.0%
!! GAACTCAGTTGGTGCTGACA+TGG + chr4_1:17350158-17350177 Msa0538190:CDS 50.0%
!! CAGTTGGTGCTGACATGGAT+TGG + chr4_1:17350163-17350182 Msa0538190:CDS 50.0%
GTTGTCTTTACCACCTGTGC+TGG + chr4_1:17350224-17350243 Msa0538190:CDS 50.0%
TTCTTCTCAGGAACCAGCAC+AGG - chr4_1:17350240-17350259 None:intergenic 50.0%
ACTTACTTGGGAAGAGGCTC+AGG + chr4_1:17350329-17350348 Msa0538190:CDS 50.0%
! CTTGGCTTAACTTCTGGAGG+TGG - chr4_1:17350366-17350385 None:intergenic 50.0%
! GCCAAGTGTTGTCATGATCG+AGG + chr4_1:17350380-17350399 Msa0538190:CDS 50.0%
ATTCAGGAGCCTCCTGTGTT+TGG + chr4_1:17350864-17350883 Msa0538190:intron 50.0%
ACCACAGGATAAGTGAGCAG+TGG + chr4_1:17351058-17351077 Msa0538190:intron 50.0%
TCCACTGCTCACTTATCCTG+TGG - chr4_1:17351062-17351081 None:intergenic 50.0%
!! CCGGTAACTTCCGCCATTTT+TGG - chr4_1:17351101-17351120 None:intergenic 50.0%
TCCATACACGTCCACTTAGG+GGG - chr4_1:17351138-17351157 None:intergenic 50.0%
CTCCATACACGTCCACTTAG+GGG - chr4_1:17351139-17351158 None:intergenic 50.0%
GATTTGACAGTCCGTACGGT+TGG + chr4_1:17351828-17351847 Msa0538190:intron 50.0%
GAAGATTCACGATCCAGAGC+TGG - chr4_1:17352370-17352389 None:intergenic 50.0%
! GCTCTGGATCGTGAATCTTC+TGG + chr4_1:17352370-17352389 Msa0538190:CDS 50.0%
GGAGATGATGCAAGTGACTC+TGG + chr4_1:17352424-17352443 Msa0538190:CDS 50.0%
ATGATGCAAGTGACTCTGGC+AGG + chr4_1:17352428-17352447 Msa0538190:CDS 50.0%
!! ATGACGAGGGTGTCTTGTTG+TGG - chr4_1:17352467-17352486 None:intergenic 50.0%
CAACAAGACACCCTCGTCAT+AGG + chr4_1:17352467-17352486 Msa0538190:CDS 50.0%
TCTGTATCCAGCCACCAAGT+GGG + chr4_1:17352509-17352528 Msa0538190:CDS 50.0%
TTGTGTTTGCCCTTCCCACT+TGG - chr4_1:17352526-17352545 None:intergenic 50.0%
TCAGCAATCATGGAGGACCA+AGG + chr4_1:17352657-17352676 Msa0538190:CDS 50.0%
GGTTCGGAGAATGAAGCAAG+AGG + chr4_1:17352727-17352746 Msa0538190:CDS 50.0%
CTTGAATTGCCAACCGGATC+GGG + chr4_1:17352813-17352832 Msa0538190:CDS 50.0%
GCTTCAGGTATGTCTCCAAC+GGG - chr4_1:17352900-17352919 None:intergenic 50.0%
TTGTACACCAGTGTGAGGCA+AGG + chr4_1:17353301-17353320 Msa0538190:three_prime_UTR 50.0%
TTCAACTCCTTGCCTCACAC+TGG - chr4_1:17353311-17353330 None:intergenic 50.0%
CGTGGAGGAGAGGGTTTGAA+CGG - chr4_1:17345400-17345419 None:intergenic 55.0%
GCATTTGTGTTGCAGCGTGG+AGG - chr4_1:17345415-17345434 None:intergenic 55.0%
TTATGGAGATAAGGCGGCGG+CGG - chr4_1:17345474-17345493 None:intergenic 55.0%
AGGGAAGTTCCGGTCACAGT+TGG - chr4_1:17345497-17345516 None:intergenic 55.0%
!! GAACCTCTACGTCGATTCGG+TGG + chr4_1:17345695-17345714 Msa0538190:CDS 55.0%
GGTGTCAAGTTCGTTTCCCC+CGG + chr4_1:17346513-17346532 Msa0538190:intron 55.0%
AGCCCATCGAAATTGGCACC+GGG - chr4_1:17346534-17346553 None:intergenic 55.0%
CGTGACTGCCTGATCGAGAT+CGG - chr4_1:17347122-17347141 None:intergenic 55.0%
! GGAGATAGAGTTGGCCTAGG+AGG - chr4_1:17348627-17348646 None:intergenic 55.0%
! CCTGGAGATAGAGTTGGCCT+AGG - chr4_1:17348630-17348649 None:intergenic 55.0%
CCTAGGCCAACTCTATCTCC+AGG + chr4_1:17348627-17348646 Msa0538190:CDS 55.0%
TGCTGGTCGAATTGGTCGCT+TGG + chr4_1:17348977-17348996 Msa0538190:CDS 55.0%
CCCTCCTATCTCTCAACCTG+AGG + chr4_1:17349145-17349164 Msa0538190:CDS 55.0%
!! CCCTCAGGTTGAGAGATAGG+AGG - chr4_1:17349149-17349168 None:intergenic 55.0%
!! AGGCCCTCAGGTTGAGAGAT+AGG - chr4_1:17349152-17349171 None:intergenic 55.0%
ATACGCAAAGGAAGGCCCTC+AGG - chr4_1:17349164-17349183 None:intergenic 55.0%
CAACTGCAAGCTGGCGATAC+TGG + chr4_1:17349290-17349309 Msa0538190:CDS 55.0%
TTAGCCGTATGGACCCTGAG+GGG + chr4_1:17349859-17349878 Msa0538190:CDS 55.0%
GTTTCCCCTCAGGGTCCATA+CGG - chr4_1:17349866-17349885 None:intergenic 55.0%
TTCTCAGGAACCAGCACAGG+TGG - chr4_1:17350237-17350256 None:intergenic 55.0%
TCCCCCTAAGTGGACGTGTA+TGG + chr4_1:17351134-17351153 Msa0538190:CDS 55.0%
GCTTATGCGATGCTGTCAGC+AGG + chr4_1:17351239-17351258 Msa0538190:intron 55.0%
!! CAGACAATACAGGAGCACCC+AGG - chr4_1:17352493-17352512 None:intergenic 55.0%
GTCTGTATCCAGCCACCAAG+TGG + chr4_1:17352508-17352527 Msa0538190:CDS 55.0%
TATCCAGCCACCAAGTGGGA+AGG + chr4_1:17352513-17352532 Msa0538190:CDS 55.0%
ATCCAGCCACCAAGTGGGAA+GGG + chr4_1:17352514-17352533 Msa0538190:CDS 55.0%
TGTTTGCCCTTCCCACTTGG+TGG - chr4_1:17352523-17352542 None:intergenic 55.0%
CAGCATCAGCCACTTGGTCT+TGG - chr4_1:17352777-17352796 None:intergenic 55.0%
CAAGTGGCTGATGCTGCCAA+GGG + chr4_1:17352781-17352800 Msa0538190:CDS 55.0%
GCTTGCATGTCTTCCCGATC+CGG - chr4_1:17352829-17352848 None:intergenic 55.0%
GATCGGGAAGACATGCAAGC+TGG + chr4_1:17352829-17352848 Msa0538190:CDS 55.0%
GGAGGAGAGGGTTTGAACGG+AGG - chr4_1:17345397-17345416 None:intergenic 60.0%
GTGTTGCAGCGTGGAGGAGA+GGG - chr4_1:17345409-17345428 None:intergenic 60.0%
TGTGTTGCAGCGTGGAGGAG+AGG - chr4_1:17345410-17345429 None:intergenic 60.0%
! CGAGCGAGTTGCGGTGGTTT+TGG - chr4_1:17345442-17345461 None:intergenic 60.0%
!! CCTCTACGTCGATTCGGTGG+CGG + chr4_1:17345698-17345717 Msa0538190:CDS 60.0%
!! ACGTCGATTCGGTGGCGGAA+AGG + chr4_1:17345703-17345722 Msa0538190:CDS 60.0%
!! CGATTCGGTGGCGGAAAGGT+TGG + chr4_1:17345707-17345726 Msa0538190:CDS 60.0%
! TCCCCCGGTGCCAATTTCGA+TGG + chr4_1:17346528-17346547 Msa0538190:intron 60.0%
! CCCATCGAAATTGGCACCGG+GGG - chr4_1:17346532-17346551 None:intergenic 60.0%
! CCCCCGGTGCCAATTTCGAT+GGG + chr4_1:17346529-17346548 Msa0538190:intron 60.0%
GCCCATCGAAATTGGCACCG+GGG - chr4_1:17346533-17346552 None:intergenic 60.0%
ATAGCAAGGCCTCCTGCCGA+AGG + chr4_1:17348687-17348706 Msa0538190:CDS 60.0%
TTCCTTCCTCGTCCTTCGGC+AGG - chr4_1:17348702-17348721 None:intergenic 60.0%
AGACACCCTCGTCATAGGCC+TGG + chr4_1:17352472-17352491 Msa0538190:CDS 60.0%
GACACCCTCGTCATAGGCCT+GGG + chr4_1:17352473-17352492 Msa0538190:CDS 60.0%
AGCACCCAGGCCTATGACGA+GGG - chr4_1:17352480-17352499 None:intergenic 60.0%
CCTTGGCAGCATCAGCCACT+TGG - chr4_1:17352783-17352802 None:intergenic 60.0%
CCAAGTGGCTGATGCTGCCA+AGG + chr4_1:17352780-17352799 Msa0538190:CDS 60.0%
GCATGTCTTCCCGATCCGGT+TGG - chr4_1:17352825-17352844 None:intergenic 60.0%
CCGCCACCGAATCGACGTAG+AGG - chr4_1:17345701-17345720 None:intergenic 65.0%
TGGTTACCCCAGGTCGGACC+TGG + chr4_1:17346696-17346715 Msa0538190:intron 65.0%
GGTTACCCCAGGTCGGACCT+GGG + chr4_1:17346697-17346716 Msa0538190:intron 65.0%
GAGATCCCAGGTCCGACCTG+GGG - chr4_1:17346705-17346724 None:intergenic 65.0%
GGAGATCCCAGGTCCGACCT+GGG - chr4_1:17346706-17346725 None:intergenic 65.0%
CTTCCTCGTCCTTCGGCAGG+AGG - chr4_1:17348699-17348718 None:intergenic 65.0%
CTCCTGCCGAAGGACGAGGA+AGG + chr4_1:17348697-17348716 Msa0538190:CDS 65.0%
GACAAGCAGCGGCAAGCCAG+AGG + chr4_1:17352344-17352363 Msa0538190:CDS 65.0%
! CACGATCCAGAGCTGGCCTC+TGG - chr4_1:17352363-17352382 None:intergenic 65.0%
GAGCACCCAGGCCTATGACG+AGG - chr4_1:17352481-17352500 None:intergenic 65.0%
! TGCCCTTCCCACTTGGTGGC+TGG - chr4_1:17352519-17352538 None:intergenic 65.0%
!! TGGTGGCGGCGAGCGAGTTG+CGG - chr4_1:17345451-17345470 None:intergenic 70.0%
AGATAAGGCGGCGGCGGTGG+TGG - chr4_1:17345468-17345487 None:intergenic 70.0%
TGGAGATAAGGCGGCGGCGG+TGG - chr4_1:17345471-17345490 None:intergenic 70.0%
CGGAGATCCCAGGTCCGACC+TGG - chr4_1:17346707-17346726 None:intergenic 70.0%
AGGCCTCCTGCCGAAGGACG+AGG + chr4_1:17348693-17348712 Msa0538190:CDS 70.0%
GGCAAGCCAGAGGCCAGCTC+TGG + chr4_1:17352354-17352373 Msa0538190:CDS 70.0%
TGGCGGCGAGCGAGTTGCGG+TGG - chr4_1:17345448-17345467 None:intergenic 75.0%
! TAAGGCGGCGGCGGTGGTGG+CGG - chr4_1:17345465-17345484 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17345207 17353495 17345207 ID=Msa0538190;Name=Msa0538190
chr4_1 mRNA 17345207 17353495 17345207 ID=Msa0538190-mRNA-1;Parent=Msa0538190;Name=Msa0538190-mRNA-1;_AED=0.07;_eAED=0.07;_QI=362|1|1|1|0.83|0.84|13|385|901
chr4_1 exon 17345207 17345547 17345207 ID=Msa0538190-mRNA-1:exon:5158;Parent=Msa0538190-mRNA-1
chr4_1 exon 17345640 17345773 17345640 ID=Msa0538190-mRNA-1:exon:5159;Parent=Msa0538190-mRNA-1
chr4_1 exon 17347420 17347501 17347420 ID=Msa0538190-mRNA-1:exon:5160;Parent=Msa0538190-mRNA-1
chr4_1 exon 17347593 17347694 17347593 ID=Msa0538190-mRNA-1:exon:5161;Parent=Msa0538190-mRNA-1
chr4_1 exon 17348165 17348784 17348165 ID=Msa0538190-mRNA-1:exon:5162;Parent=Msa0538190-mRNA-1
chr4_1 exon 17348926 17349022 17348926 ID=Msa0538190-mRNA-1:exon:5163;Parent=Msa0538190-mRNA-1
chr4_1 exon 17349137 17349311 17349137 ID=Msa0538190-mRNA-1:exon:5164;Parent=Msa0538190-mRNA-1
chr4_1 exon 17349853 17349929 17349853 ID=Msa0538190-mRNA-1:exon:5165;Parent=Msa0538190-mRNA-1
chr4_1 exon 17350000 17350425 17350000 ID=Msa0538190-mRNA-1:exon:5166;Parent=Msa0538190-mRNA-1
chr4_1 exon 17350870 17350919 17350870 ID=Msa0538190-mRNA-1:exon:5167;Parent=Msa0538190-mRNA-1
chr4_1 exon 17351065 17351178 17351065 ID=Msa0538190-mRNA-1:exon:5168;Parent=Msa0538190-mRNA-1
chr4_1 exon 17351261 17351328 17351261 ID=Msa0538190-mRNA-1:exon:5169;Parent=Msa0538190-mRNA-1
chr4_1 exon 17352329 17353495 17352329 ID=Msa0538190-mRNA-1:exon:5170;Parent=Msa0538190-mRNA-1
chr4_1 five_prime_UTR 17345207 17345547 17345207 ID=Msa0538190-mRNA-1:five_prime_utr;Parent=Msa0538190-mRNA-1
chr4_1 five_prime_UTR 17345640 17345660 17345640 ID=Msa0538190-mRNA-1:five_prime_utr;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17345661 17345773 17345661 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17347420 17347501 17347420 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17347593 17347694 17347593 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17348165 17348784 17348165 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17348926 17349022 17348926 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17349137 17349311 17349137 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17349853 17349929 17349853 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17350000 17350425 17350000 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17350870 17350919 17350870 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17351065 17351178 17351065 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17351261 17351328 17351261 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 CDS 17352329 17353110 17352329 ID=Msa0538190-mRNA-1:cds;Parent=Msa0538190-mRNA-1
chr4_1 three_prime_UTR 17353111 17353495 17353111 ID=Msa0538190-mRNA-1:three_prime_utr;Parent=Msa0538190-mRNA-1
Gene Sequence

>Msa0538190

ATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGGTTGGATTCTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGAGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGAATTCAAGAAACAAAGACAAGCAGCGGCAAGCCAGAGGCCAGCTCTGGATCGTGAATCTTCTGGTCTTGATGCTTTAGCAAATGCTGCGGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGTTGACCACAACAAGACACCCTCGTCATAGGCCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGTAATGTCTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAGCGCGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGAGGGCCAAATGAATTAGATTCAAGTAACCAAGACCAAGTGGCTGATGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCGGATCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCGTTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCAGTTCATGAACAGGAAGACAGTCCTGAAGAGAATAGTGGGCAAGACAGAGACCAACACAATTCACTTTCTTGA
Protein sequence

>Msa0538190

MESKCCMNVVCGTSTSIRWRKGWILRSGEFADLCDKCGSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNEFKKQRQAAASQRPALDRESSGLDALANAAVLGDDASDSGRTPVLTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTKDESEVDSTSRHLTPVDGSENEARGPNELDSSNQDQVADAAKGQLDLNCQPDREDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCCTASAVHEQEDSPEENSGQDRDQHNSLS*