AlfalfaGEDB | Msa1408110

M. sativa cultivar zhongmu-4 / Msa1408110

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408110	XP_003605289.1	98.113	901	16	1	1	901	1	900	0.0	1833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408110	sp\|Q6Z3U3\|Y7797_ORYSJ	49.946	933	395	22	4	885	15	926	0.0	813

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408110	G7JIB0	98.113	901	16	1	1	901	1	900	0.0	1833

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TFs/TRs:

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Gene ID	Type	Classification
Msa1408110	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030700	Msa1408110	0.833365	5.561170e-56	-8.615850e-47
Msa0078120	Msa1408110	0.816394	5.657259e-52	-8.615850e-47
Msa0189710	Msa1408110	0.848523	5.807407e-60	-8.615850e-47
Msa0232020	Msa1408110	0.839150	1.882365e-57	-8.615850e-47
Msa0232090	Msa1408110	0.854574	1.124040e-61	-8.615850e-47
Msa0287780	Msa1408110	0.812817	3.502803e-51	-8.615850e-47
Msa0310090	Msa1408110	0.847521	1.097015e-59	-8.615850e-47
Msa0403470	Msa1408110	-0.811221	7.801868e-51	-8.615850e-47
Msa0436060	Msa1408110	0.814720	1.334365e-51	-8.615850e-47
Msa0527770	Msa1408110	0.890909	6.427067e-74	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408110	MtrunA17_Chr4g0012861	98.113	901	16	1	1	901	1	900	0.0	1833
Msa1408110	MtrunA17_Chr3g0107701	48.115	902	416	12	19	887	16	898	0.0	793
Msa1408110	MtrunA17_Chr5g0432721	43.426	829	403	12	1	815	1	777	0.0	612
Msa1408110	MtrunA17_Chr2g0281191	51.706	586	217	13	270	839	308	843	5.04e-180	543
Msa1408110	MtrunA17_Chr2g0281191	43.411	129	56	2	4	132	29	140	1.50e-26	117
Msa1408110	MtrunA17_Chr7g0244871	68.478	92	29	0	308	399	6	97	1.48e-40	144
Msa1408110	MtrunA17_Chr7g0251891	37.838	111	68	1	314	423	16	126	2.45e-19	87.4
Msa1408110	MtrunA17_Chr7g0237841	35.714	98	62	1	314	410	623	720	8.94e-15	79.0
Msa1408110	MtrunA17_Chr1g0178071	36.090	133	65	6	295	414	54	179	1.31e-14	76.3
Msa1408110	MtrunA17_Chr8g0345771	37.273	110	61	4	314	417	171	278	2.46e-14	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1408110	AT4G32010.2	50.117	858	311	15	1	852	1	747	0.0	796
Msa1408110	AT4G32010.1	49.884	862	311	16	1	852	1	751	0.0	790
Msa1408110	AT2G30470.1	51.348	779	306	19	1	765	6	725	0.0	710
Msa1408110	AT4G21550.3	34.396	596	282	15	3	570	14	528	4.40e-93	305
Msa1408110	AT4G21550.1	34.899	596	280	12	3	571	14	528	1.26e-89	300
Msa1408110	AT4G21550.1	37.795	127	57	3	687	812	550	655	4.46e-12	70.5
Msa1408110	AT4G21550.2	33.793	580	276	13	3	555	14	512	9.73e-89	292
Msa1408110	AT3G26790.1	39.450	109	65	1	314	421	91	199	7.64e-20	92.0
Msa1408110	AT5G06250.5	32.948	173	95	5	314	467	45	215	1.09e-16	81.6
Msa1408110	AT5G06250.4	32.948	173	95	5	314	467	45	215	1.09e-16	82.0

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Find 287 sgRNAs with CRISPR-Local

Find 566 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTATCCAGTTCCCT+TGG	0.457180	tig0023361:-68311	None:intergenic
AAAATGATGGGATGAGGTAC+TGG	0.452920	tig0023361:+65309	Msa1408110:CDS
AAAATTACAGGAGGTTTGTT+TGG	0.274922	tig0023361:+70208	Msa1408110:three_prime_UTR
AAAGGGATTTGGCAAAGGAG+CGG	0.674141	tig0023361:-65534	None:intergenic
AAAGGTTGGATTCTTCGATC+CGG	0.567319	tig0023361:+62741	Msa1408110:CDS
AAATTACAGGAGGTTTGTTT+GGG	0.383291	tig0023361:+70209	Msa1408110:three_prime_UTR
AAATTCAGCTTCAAATGTGC+AGG	0.519112	tig0023361:+69976	Msa1408110:CDS
AACAAATTCTGCTTCAGTAC+AGG	0.472669	tig0023361:+66928	Msa1408110:CDS
AACGGTTACCGGAGAGAAAA+TGG	0.205781	tig0023361:-62366	None:intergenic
AACTCTTGATCTGTAATTCT+GGG	0.432750	tig0023361:-65764	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGATTATACTTCAAGACT+TGG	-	tig0023361:62231-62250	None:intergenic	30.0%
GTTAGGAAGGAAATGAAAAA+CGG	-	tig0023361:62387-62406	None:intergenic	30.0%
TTGTGAATTTATGAAGGTTG+TGG	+	tig0023361:62644-62663	Msa1408110:intron	30.0%
TGTGGAATTGAAGTTGAAAA+TGG	+	tig0023361:62662-62681	Msa1408110:exon	30.0%
AAACGCCAAATATTGTTTGT+AGG	+	tig0023361:63454-63473	Msa1408110:intron	30.0%
TTAGGCCTACAAACAATATT+TGG	-	tig0023361:63462-63481	None:intergenic	30.0%
TATGTCTACATCAAAAAAGC+TGG	+	tig0023361:63781-63800	Msa1408110:intron	30.0%
CTGCAGATAATAGAACAAAT+AGG	-	tig0023361:64593-64612	None:intergenic	30.0%
TATTTCATCTATTTCCAGAG+AGG	-	tig0023361:64767-64786	None:intergenic	30.0%
AATGTATGATGATAGATAGC+AGG	+	tig0023361:64859-64878	Msa1408110:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023361	gene	62227	70514	62227	ID=Msa1408110;Name=Msa1408110
tig0023361	mRNA	62227	70514	62227	ID=Msa1408110-mRNA-1;Parent=Msa1408110;Name=Msa1408110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=362\|1\|1\|1\|0.83\|0.84\|13\|385\|901
tig0023361	exon	62227	62567	62227	ID=Msa1408110-mRNA-1:exon:25461;Parent=Msa1408110-mRNA-1
tig0023361	exon	62660	62793	62660	ID=Msa1408110-mRNA-1:exon:25462;Parent=Msa1408110-mRNA-1
tig0023361	exon	64440	64521	64440	ID=Msa1408110-mRNA-1:exon:25463;Parent=Msa1408110-mRNA-1
tig0023361	exon	64613	64714	64613	ID=Msa1408110-mRNA-1:exon:25464;Parent=Msa1408110-mRNA-1
tig0023361	exon	65185	65804	65185	ID=Msa1408110-mRNA-1:exon:25465;Parent=Msa1408110-mRNA-1
tig0023361	exon	65946	66042	65946	ID=Msa1408110-mRNA-1:exon:25466;Parent=Msa1408110-mRNA-1
tig0023361	exon	66157	66331	66157	ID=Msa1408110-mRNA-1:exon:25467;Parent=Msa1408110-mRNA-1
tig0023361	exon	66873	66949	66873	ID=Msa1408110-mRNA-1:exon:25468;Parent=Msa1408110-mRNA-1
tig0023361	exon	67020	67445	67020	ID=Msa1408110-mRNA-1:exon:25469;Parent=Msa1408110-mRNA-1
tig0023361	exon	67889	67938	67889	ID=Msa1408110-mRNA-1:exon:25470;Parent=Msa1408110-mRNA-1
tig0023361	exon	68084	68197	68084	ID=Msa1408110-mRNA-1:exon:25471;Parent=Msa1408110-mRNA-1
tig0023361	exon	68280	68347	68280	ID=Msa1408110-mRNA-1:exon:25472;Parent=Msa1408110-mRNA-1
tig0023361	exon	69348	70514	69348	ID=Msa1408110-mRNA-1:exon:25473;Parent=Msa1408110-mRNA-1
tig0023361	five_prime_UTR	62227	62567	62227	ID=Msa1408110-mRNA-1:five_prime_utr;Parent=Msa1408110-mRNA-1
tig0023361	five_prime_UTR	62660	62680	62660	ID=Msa1408110-mRNA-1:five_prime_utr;Parent=Msa1408110-mRNA-1
tig0023361	CDS	62681	62793	62681	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	64440	64521	64440	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	64613	64714	64613	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	65185	65804	65185	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	65946	66042	65946	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	66157	66331	66157	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	66873	66949	66873	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	67020	67445	67020	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	67889	67938	67889	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	68084	68197	68084	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	68280	68347	68280	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	CDS	69348	70129	69348	ID=Msa1408110-mRNA-1:cds;Parent=Msa1408110-mRNA-1
tig0023361	three_prime_UTR	70130	70514	70130	ID=Msa1408110-mRNA-1:three_prime_utr;Parent=Msa1408110-mRNA-1

Gene Sequence

>Msa1408110

ATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGGTTGGATTCTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGAGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGAATTCAAGAAACAAAGACAAGCAGCGGCAAGCCAGAGGCCAGCTCTGGATCGTGAATCTTCTGGTCTTGATGCTTTAGCAAATGCTGCGGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGTTGACCACAACAAGACACCCTCGTCATAGGCCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGTAATGTCTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAGCGCGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGAGGGCCAAATGAATTAGATTCAAGTAACCAAGACCAAGTGGCTGATGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCGGATCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCGTTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCAGTTCATGAACAGGAAGACAGTCCTGAAGAGAATAGTGGGCAAGACAGAGACCAACACAATTCACTTTCTTGA

Protein sequence

>Msa1408110

MESKCCMNVVCGTSTSIRWRKGWILRSGEFADLCDKCGSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNEFKKQRQAAASQRPALDRESSGLDALANAAVLGDDASDSGRTPVLTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTKDESEVDSTSRHLTPVDGSENEARGPNELDSSNQDQVADAAKGQLDLNCQPDREDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCCTASAVHEQEDSPEENSGQDRDQHNSLS*