AlfalfaGEDB | Msa0641220

M. sativa cultivar zhongmu-4 / Msa0641220

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641220	XP_003605289.1	98.113	901	16	1	1	901	1	900	0.0	1833

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641220	sp\|Q6Z3U3\|Y7797_ORYSJ	49.946	933	395	22	4	885	15	926	0.0	813

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641220	G7JIB0	98.113	901	16	1	1	901	1	900	0.0	1833

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TFs/TRs:

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Gene ID	Type	Classification
Msa0641220	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030700	Msa0641220	0.829991	3.775932e-55	-8.615850e-47
Msa0078120	Msa0641220	0.815501	8.951391e-52	-8.615850e-47
Msa0106710	Msa0641220	0.804030	2.627118e-49	-8.615850e-47
Msa0189710	Msa0641220	0.860568	1.886435e-63	-8.615850e-47
Msa0232020	Msa0641220	0.862082	6.518717e-64	-8.615850e-47
Msa0232090	Msa0641220	0.862499	4.854200e-64	-8.615850e-47
Msa0237210	Msa0641220	0.816783	4.628207e-52	-8.615850e-47
Msa0278450	Msa0641220	0.800685	1.283652e-48	-8.615850e-47
Msa0287780	Msa0641220	0.822613	2.156951e-53	-8.615850e-47
Msa0287870	Msa0641220	0.804779	1.833623e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641220	MtrunA17_Chr4g0012861	98.113	901	16	1	1	901	1	900	0.0	1833
Msa0641220	MtrunA17_Chr3g0107701	48.115	902	416	12	19	887	16	898	0.0	793
Msa0641220	MtrunA17_Chr5g0432721	43.305	829	404	12	1	815	1	777	0.0	611
Msa0641220	MtrunA17_Chr2g0281191	51.706	586	217	13	270	839	308	843	3.66e-180	543
Msa0641220	MtrunA17_Chr2g0281191	43.411	129	56	2	4	132	29	140	1.54e-26	117
Msa0641220	MtrunA17_Chr7g0244871	68.478	92	29	0	308	399	6	97	1.48e-40	144
Msa0641220	MtrunA17_Chr7g0251891	37.838	111	68	1	314	423	16	126	2.42e-19	87.4
Msa0641220	MtrunA17_Chr7g0237841	35.714	98	62	1	314	410	623	720	8.79e-15	79.0
Msa0641220	MtrunA17_Chr1g0178071	36.090	133	65	6	295	414	54	179	1.35e-14	76.3
Msa0641220	MtrunA17_Chr8g0345771	37.273	110	61	4	314	417	171	278	2.53e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0641220	AT4G32010.2	50.233	858	310	15	1	852	1	747	0.0	797
Msa0641220	AT4G32010.1	50.000	862	310	16	1	852	1	751	0.0	791
Msa0641220	AT2G30470.1	51.226	775	313	18	1	765	6	725	0.0	710
Msa0641220	AT4G21550.3	34.396	596	282	15	3	570	14	528	4.73e-93	305
Msa0641220	AT4G21550.1	34.899	596	280	12	3	571	14	528	1.33e-89	300
Msa0641220	AT4G21550.1	37.795	127	57	3	687	812	550	655	4.38e-12	70.5
Msa0641220	AT4G21550.2	33.793	580	276	13	3	555	14	512	8.96e-89	292
Msa0641220	AT3G26790.1	39.450	109	65	1	314	421	91	199	7.43e-20	92.0
Msa0641220	AT5G06250.5	32.948	173	95	5	314	467	45	215	9.79e-17	81.6
Msa0641220	AT5G06250.4	32.948	173	95	5	314	467	45	215	1.04e-16	82.0

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Find 287 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAGAAAGAAAGAG+AGG	0.466357	4_3:-41204592	None:intergenic
AAAAGATTATCCAGTTCCCT+TGG	0.457180	4_3:-41210607	None:intergenic
AAAATGATGGGATGAGGTAC+TGG	0.452920	4_3:+41207604	Msa0641220:CDS
AAAATTACAGGAAGTTTGAT+TGG	0.331996	4_3:+41212507	Msa0641220:three_prime_UTR
AAAGGGATTTGGCAAAGGAG+CGG	0.674141	4_3:-41207829	None:intergenic
AAAGGTTGGATTCTTCGATC+CGG	0.567319	4_3:+41205037	Msa0641220:CDS
AAATTACAGGAAGTTTGATT+GGG	0.471299	4_3:+41212508	Msa0641220:three_prime_UTR
AAATTCAGCTTCAAATGTGC+AGG	0.519112	4_3:+41212274	Msa0641220:CDS
AACAAATTCTGCTTCAGTAC+AGG	0.472669	4_3:+41209223	Msa0641220:CDS
AACTCTTGATCTGTAATTCT+GGG	0.432750	4_3:-41208059	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGATTATACTTCAAGACT+TGG	-	chr4_3:41204544-41204563	None:intergenic	30.0%
AAAAGAGAAGAAAGAAAGAG+AGG	-	chr4_3:41204595-41204614	None:intergenic	30.0%
AAGTTAGAGAGGAAATGAAA+CGG	-	chr4_3:41204709-41204728	None:intergenic	30.0%
TTGTGAATTTATGAAGGTTG+TGG	+	chr4_3:41204940-41204959	Msa0641220:intron	30.0%
TGTGGAATTGAAGTTGAAAA+TGG	+	chr4_3:41204958-41204977	Msa0641220:exon	30.0%
TATGTCTACATCAAAAAAGC+TGG	+	chr4_3:41206076-41206095	Msa0641220:intron	30.0%
CTGCAGATAATAGAACAAAT+AGG	-	chr4_3:41206888-41206907	None:intergenic	30.0%
TATTTCATCTATTTCCAGAG+AGG	-	chr4_3:41207062-41207081	None:intergenic	30.0%
AATGTATGATGATAGATAGC+AGG	+	chr4_3:41207154-41207173	Msa0641220:intron	30.0%
AATGAAAAGCCTAATGAATC+TGG	+	chr4_3:41207489-41207508	Msa0641220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	41204540	41212804	41204540	ID=Msa0641220;Name=Msa0641220
chr4_3	mRNA	41204540	41212804	41204540	ID=Msa0641220-mRNA-1;Parent=Msa0641220;Name=Msa0641220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=371\|1\|1\|1\|0.91\|0.92\|13\|377\|901
chr4_3	exon	41204540	41204889	41204540	ID=Msa0641220-mRNA-1:exon:9264;Parent=Msa0641220-mRNA-1
chr4_3	exon	41204956	41205089	41204956	ID=Msa0641220-mRNA-1:exon:9265;Parent=Msa0641220-mRNA-1
chr4_3	exon	41206735	41206816	41206735	ID=Msa0641220-mRNA-1:exon:9266;Parent=Msa0641220-mRNA-1
chr4_3	exon	41206908	41207009	41206908	ID=Msa0641220-mRNA-1:exon:9267;Parent=Msa0641220-mRNA-1
chr4_3	exon	41207480	41208099	41207480	ID=Msa0641220-mRNA-1:exon:9268;Parent=Msa0641220-mRNA-1
chr4_3	exon	41208241	41208337	41208241	ID=Msa0641220-mRNA-1:exon:9269;Parent=Msa0641220-mRNA-1
chr4_3	exon	41208452	41208626	41208452	ID=Msa0641220-mRNA-1:exon:9270;Parent=Msa0641220-mRNA-1
chr4_3	exon	41209168	41209244	41209168	ID=Msa0641220-mRNA-1:exon:9271;Parent=Msa0641220-mRNA-1
chr4_3	exon	41209315	41209740	41209315	ID=Msa0641220-mRNA-1:exon:9272;Parent=Msa0641220-mRNA-1
chr4_3	exon	41210185	41210234	41210185	ID=Msa0641220-mRNA-1:exon:9273;Parent=Msa0641220-mRNA-1
chr4_3	exon	41210380	41210493	41210380	ID=Msa0641220-mRNA-1:exon:9274;Parent=Msa0641220-mRNA-1
chr4_3	exon	41210576	41210643	41210576	ID=Msa0641220-mRNA-1:exon:9275;Parent=Msa0641220-mRNA-1
chr4_3	exon	41211646	41212804	41211646	ID=Msa0641220-mRNA-1:exon:9276;Parent=Msa0641220-mRNA-1
chr4_3	five_prime_UTR	41204540	41204889	41204540	ID=Msa0641220-mRNA-1:five_prime_utr;Parent=Msa0641220-mRNA-1
chr4_3	five_prime_UTR	41204956	41204976	41204956	ID=Msa0641220-mRNA-1:five_prime_utr;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41204977	41205089	41204977	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41206735	41206816	41206735	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41206908	41207009	41206908	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41207480	41208099	41207480	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41208241	41208337	41208241	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41208452	41208626	41208452	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41209168	41209244	41209168	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41209315	41209740	41209315	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41210185	41210234	41210185	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41210380	41210493	41210380	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41210576	41210643	41210576	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	CDS	41211646	41212427	41211646	ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3	three_prime_UTR	41212428	41212804	41212428	ID=Msa0641220-mRNA-1:three_prime_utr;Parent=Msa0641220-mRNA-1

Gene Sequence

>Msa0641220

ATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGGTTGGATTCTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGAATTCAAGAAACAAAGACAAGCATCGGCAAGCCAGAGGCCAGCTCTGGATCGTGAATCTTCTGGTCTTGATGCTTTAGCAAATGCTGCGGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGTTGACCACAACAAGACACCCTCGTCATAGGCCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGTAATGTCTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAGCGCGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGAGGGCCAAATGAATTAGATTCAAGTAACCAAGACCAAGTGGCTGATGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCGGATCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCGTTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCAGTTCATGAACAGGAAGACAGTCCTGAAGAGAATAGTGGGCAAGACAGAGACCAAAACAATTCACTTTCTTGA

Protein sequence

>Msa0641220

MESKCCMNVVCGTSTSIRWRKGWILRSGEFADLCDKCGSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNEFKKQRQASASQRPALDRESSGLDALANAAVLGDDASDSGRTPVLTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTKDESEVDSTSRHLTPVDGSENEARGPNELDSSNQDQVADAAKGQLDLNCQPDREDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCCTASAVHEQEDSPEENSGQDRDQNNSLS*