AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641220 MtrunA17_Chr4g0012861 98.113 901 16 1 1 901 1 900 0.0 1833
Msa0641220 MtrunA17_Chr3g0107701 48.115 902 416 12 19 887 16 898 0.0 793
Msa0641220 MtrunA17_Chr5g0432721 43.305 829 404 12 1 815 1 777 0.0 611
Msa0641220 MtrunA17_Chr2g0281191 51.706 586 217 13 270 839 308 843 3.66e-180 543
Msa0641220 MtrunA17_Chr2g0281191 43.411 129 56 2 4 132 29 140 1.54e-26 117
Msa0641220 MtrunA17_Chr7g0244871 68.478 92 29 0 308 399 6 97 1.48e-40 144
Msa0641220 MtrunA17_Chr7g0251891 37.838 111 68 1 314 423 16 126 2.42e-19 87.4
Msa0641220 MtrunA17_Chr7g0237841 35.714 98 62 1 314 410 623 720 8.79e-15 79.0
Msa0641220 MtrunA17_Chr1g0178071 36.090 133 65 6 295 414 54 179 1.35e-14 76.3
Msa0641220 MtrunA17_Chr8g0345771 37.273 110 61 4 314 417 171 278 2.53e-14 76.6
Msa0641220 MtrunA17_Chr7g0276471 40.659 91 49 3 314 401 117 205 7.26e-14 75.1
Msa0641220 MtrunA17_Chr7g0244881 41.441 111 62 2 199 306 3 113 2.71e-13 67.4
Msa0641220 MtrunA17_Chr7g0266821 39.252 107 58 5 319 421 65 168 6.71e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641220 AT4G32010.2 50.233 858 310 15 1 852 1 747 0.0 797
Msa0641220 AT4G32010.1 50.000 862 310 16 1 852 1 751 0.0 791
Msa0641220 AT2G30470.1 51.226 775 313 18 1 765 6 725 0.0 710
Msa0641220 AT4G21550.3 34.396 596 282 15 3 570 14 528 4.73e-93 305
Msa0641220 AT4G21550.1 34.899 596 280 12 3 571 14 528 1.33e-89 300
Msa0641220 AT4G21550.1 37.795 127 57 3 687 812 550 655 4.38e-12 70.5
Msa0641220 AT4G21550.2 33.793 580 276 13 3 555 14 512 8.96e-89 292
Msa0641220 AT3G26790.1 39.450 109 65 1 314 421 91 199 7.43e-20 92.0
Msa0641220 AT5G06250.5 32.948 173 95 5 314 467 45 215 9.79e-17 81.6
Msa0641220 AT5G06250.4 32.948 173 95 5 314 467 45 215 1.04e-16 82.0
Msa0641220 AT5G06250.2 32.948 173 95 5 314 467 45 215 1.17e-16 82.0
Msa0641220 AT1G13260.1 40.000 110 59 5 314 418 187 294 1.79e-15 79.3
Msa0641220 AT3G24650.1 37.931 116 70 2 314 427 571 686 2.47e-15 80.9
Msa0641220 AT1G28300.1 40.741 108 60 3 294 398 149 255 3.34e-15 79.0
Msa0641220 AT2G36080.4 39.815 108 56 4 314 414 37 142 3.78e-15 74.7
Msa0641220 AT2G36080.2 39.815 108 56 4 314 414 37 142 3.78e-15 74.7
Msa0641220 AT2G36080.3 39.815 108 56 4 314 414 37 142 4.29e-15 76.3
Msa0641220 AT2G36080.1 39.815 108 56 4 314 414 37 142 4.58e-15 76.3
Msa0641220 AT5G06250.3 36.923 130 56 5 314 419 45 172 5.18e-15 76.6
Msa0641220 AT5G06250.1 36.923 130 56 5 314 419 45 172 5.94e-15 76.6
Msa0641220 AT4G01500.1 38.261 115 59 4 297 401 9 121 2.70e-14 75.5
Msa0641220 AT1G68840.2 43.011 93 46 4 314 401 187 277 3.94e-14 75.5
Msa0641220 AT1G68840.1 43.011 93 46 4 314 401 187 277 3.94e-14 75.5
Msa0641220 AT2G46870.1 39.560 91 50 3 314 401 34 122 7.69e-14 73.9
Msa0641220 AT3G11580.4 36.207 116 57 4 314 414 28 141 6.65e-13 69.7
Msa0641220 AT3G11580.2 36.207 116 57 4 314 414 28 141 6.65e-13 69.7
Msa0641220 AT3G11580.5 36.207 116 57 4 314 414 28 141 6.65e-13 69.7
Msa0641220 AT1G01030.2 40.659 91 49 3 314 401 55 143 7.17e-13 71.2
Msa0641220 AT1G01030.1 40.659 91 49 3 314 401 55 143 8.87e-13 71.2
Msa0641220 AT3G11580.1 36.207 116 57 4 314 414 28 141 4.15e-12 68.2
Msa0641220 AT3G11580.3 36.207 116 57 4 314 414 28 141 4.36e-12 69.3

Find 287 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTTTCAATTTAGATTT+TGG 0.133418 4_3:+41208522 Msa0641220:CDS
TACATCCTGCTATTATTATT+TGG 0.167699 4_3:-41208545 None:intergenic
CAACTCTTGATCTGTAATTC+TGG 0.172835 4_3:-41208060 None:intergenic
TTACCCTCTGTTGGAGAATT+TGG 0.188202 4_3:+41207684 Msa0641220:CDS
CGGACGAGTTGCGGTGGTTT+TGG 0.222643 4_3:-41204776 None:intergenic
GCATACCCCTCACATTTAAT+TGG 0.234093 4_3:-41207563 None:intergenic
TGACTTCAGAGTAAAGTAAA+AGG 0.239813 4_3:-41212453 None:intergenic
AAGAAAAGAACTCGAAATAT+TGG 0.272591 4_3:+41209570 Msa0641220:CDS
GGACGTGTATGGAGAACTTT+TGG 0.278484 4_3:+41210460 Msa0641220:CDS
TCAAGTGAAACTTCCTATTC+TGG 0.278901 4_3:+41209351 Msa0641220:CDS
CCAACAGAGGGTAAAACTTC+TGG 0.283471 4_3:-41207675 None:intergenic
TTCAAGAAAGTGAATTGTTT+TGG 0.283494 4_3:-41212406 None:intergenic
GAGGCCTTGCTATACGTATC+TGG 0.288912 4_3:-41207992 None:intergenic
ATTACTTCAGCACATGCTTT+TGG 0.292122 4_3:-41208320 None:intergenic
CCTATATTAAGTGGTTATTC+TGG 0.299020 4_3:+41209390 Msa0641220:CDS
TGCGTAAGCTATAAAATTAC+AGG 0.302650 4_3:+41212495 Msa0641220:three_prime_UTR
CAAACCTCACAATGTTGATT+TGG 0.320944 4_3:+41207629 Msa0641220:CDS
ATCAGTTGCTTCCGCGATAT+TGG 0.327434 4_3:+41208036 Msa0641220:CDS
ATTCAGGAGCCTCCTGTGTT+TGG 0.329853 4_3:+41210179 Msa0641220:intron
AAAATTACAGGAAGTTTGAT+TGG 0.331996 4_3:+41212507 Msa0641220:three_prime_UTR
TGTGGAATTGAAGTTGAAAA+TGG 0.332556 4_3:+41204958 Msa0641220:exon
CAACTGCAAGCTGGCGATAC+TGG 0.336996 4_3:+41208605 Msa0641220:CDS
TCTTGCCCACTATTCTCTTC+AGG 0.340208 4_3:-41212377 None:intergenic
TGCCCTTCCCACTTGGTGGC+TGG 0.342375 4_3:-41211833 None:intergenic
ACAACACTTGGCTTAACTTC+TGG 0.343319 4_3:-41209684 None:intergenic
CCCTGAGGGGAAACTTATAA+TGG 0.343393 4_3:+41209187 Msa0641220:CDS
AGAGTTGGCCTAGGAGGTTT+AGG 0.345670 4_3:-41207933 None:intergenic
TTCCCTTGGATTCAATTCAT+TGG 0.348370 4_3:-41210593 None:intergenic
CACTGGAGCTGAAACTTACT+TGG 0.350730 4_3:+41209631 Msa0641220:CDS
AATGAAAAGCCTAATGAATC+TGG 0.351647 4_3:+41207489 Msa0641220:CDS
ACTTTCTAGAGAGCGCATTT+AGG 0.352085 4_3:-41209449 None:intergenic
TCAAGAGTTGCAGCAAATAT+CGG 0.354064 4_3:+41208073 Msa0641220:CDS
CGACATTTAACTCCAGTTGA+TGG 0.354939 4_3:+41212023 Msa0641220:CDS
TTTGCTGTTCCAGATTCATT+AGG 0.360782 4_3:-41207498 None:intergenic
TTACTTGAATCTAATTCATT+TGG 0.362360 4_3:-41212068 None:intergenic
TTGTCTTCCCTCACTCTCAT+TGG 0.362735 4_3:-41212306 None:intergenic
GGCGGTGGTGTTGGCGGCGG+CGG 0.372837 4_3:-41204796 None:intergenic
ATGTGAGGGGTATGCAAGTT+GGG 0.375012 4_3:+41207571 Msa0641220:CDS
CAGCATCAGCCACTTGGTCT+TGG 0.376062 4_3:-41212091 None:intergenic
TCCCTTGGATTCAATTCATT+GGG 0.378007 4_3:-41210592 None:intergenic
AGGACATTATGAAAGGGATT+TGG 0.378577 4_3:-41207840 None:intergenic
TTAGCAAATGCTGCGGTACT+TGG 0.380392 4_3:+41211720 Msa0641220:CDS
GTCTACTTCTGATTCATCCT+TGG 0.381182 4_3:-41211991 None:intergenic
AGGCCCTCAGGTTGAGAGAT+AGG 0.381204 4_3:-41208464 None:intergenic
TATAGCTATTATATGTATAG+TGG 0.382888 4_3:-41212568 None:intergenic
ATTACCTGTGCAAGTACTTC+AGG 0.390989 4_3:+41206977 Msa0641220:CDS
ATATTTGTGGTACGATCTAC+TGG 0.393389 4_3:+41210212 Msa0641220:CDS
TGGCCTTCTTCAGTCTCAAA+AGG 0.396098 4_3:+41209410 Msa0641220:CDS
GCTCTGGATCGTGAATCTTC+TGG 0.398177 4_3:+41211687 Msa0641220:CDS
ACTTACTTGGGAAGAGGCTC+AGG 0.399619 4_3:+41209644 Msa0641220:CDS
GTCATCATGCTCAGAGTGTT+TGG 0.401168 4_3:-41212170 None:intergenic
GGAAACTTATAATGGGGTTC+AGG 0.403096 4_3:+41209195 Msa0641220:CDS
TTCCTTCCCCGTCCTTCGGC+AGG 0.411704 4_3:-41208014 None:intergenic
CCAGAATAACCACTTAATAT+AGG 0.414414 4_3:-41209390 None:intergenic
TCTGGTTTGATTTCTCTAGA+AGG 0.414545 4_3:-41207657 None:intergenic
ACTCTATCTCCAGGCTTAGA+AGG 0.416607 4_3:+41207951 Msa0641220:CDS
TGAATTGAATCCAAGGGAAC+TGG 0.417947 4_3:+41210597 Msa0641220:CDS
TCATTCTCCGAACCATCAAC+TGG 0.418732 4_3:-41212035 None:intergenic
AAGGCCTCCTGCCGAAGGAC+GGG 0.419862 4_3:+41208007 Msa0641220:CDS
AGAAAAGAACTCGAAATATT+GGG 0.421447 4_3:+41209571 Msa0641220:CDS
TGCTTCTGCAGTTCATGAAC+AGG 0.426089 4_3:+41212346 Msa0641220:CDS
CTTGAATTGCCAACCGGATC+GGG 0.426831 4_3:+41212130 Msa0641220:CDS
GGGAATTATGCAGAAAATGA+TGG 0.428592 4_3:+41207591 Msa0641220:CDS
TCTCCATACACGTCCACTTA+GGG 0.429073 4_3:-41210452 None:intergenic
AGAGGAAATGAAACGGTTAC+CGG 0.429267 4_3:-41204699 None:intergenic
AACTCTTGATCTGTAATTCT+GGG 0.432750 4_3:-41208059 None:intergenic
GGCAAGCCAGAGGCCAGCTC+TGG 0.433133 4_3:+41211671 Msa0641220:CDS
AATGTCACCTCCACTTCTAT+TGG 0.433907 4_3:+41207887 Msa0641220:CDS
GCTTGCATGTCTTCCCGATC+CGG 0.434187 4_3:-41212143 None:intergenic
ATGTTCCATGCAAAAGAATC+TGG 0.435693 4_3:+41206766 Msa0641220:CDS
TAGTGGGAAAATTGACAGTT+AGG 0.435895 4_3:-41212551 None:intergenic
CCTGTGTTTCCTTCTAAGCC+TGG 0.440594 4_3:-41207960 None:intergenic
CCTTGGCAGCATCAGCCACT+TGG 0.441564 4_3:-41212097 None:intergenic
ATTCTCATAAACACCAGAAT+AGG 0.444115 4_3:-41209364 None:intergenic
TTCACTTGAATGAGAACCAT+TGG 0.445941 4_3:-41209337 None:intergenic
TAATGTCCTTGTTGATGAAA+GGG 0.448219 4_3:+41207854 Msa0641220:CDS
CACGATCCAGAGCTGGCCTC+TGG 0.448625 4_3:-41211677 None:intergenic
TTCTTCTCAGGAACCAGCAC+AGG 0.450915 4_3:-41209552 None:intergenic
CCCATTATAAGTTTCCCCTC+AGG 0.451841 4_3:-41209188 None:intergenic
AAAATGATGGGATGAGGTAC+TGG 0.452920 4_3:+41207604 Msa0641220:CDS
TGCTGGTCGAATTGGTCGCT+TGG 0.454425 4_3:+41208292 Msa0641220:CDS
AATGTGAGGGGTATGCAAGT+TGG 0.455328 4_3:+41207570 Msa0641220:CDS
TGAACTTCCCCTCAAACTTC+CGG 0.455635 4_3:+41204842 Msa0641220:five_prime_UTR
TTTAACTCCAGTTGATGGTT+CGG 0.456293 4_3:+41212028 Msa0641220:CDS
AAAAGATTATCCAGTTCCCT+TGG 0.457180 4_3:-41210607 None:intergenic
CAACAAGACACCCTCGTCAT+AGG 0.457379 4_3:+41211784 Msa0641220:CDS
CAATTTCATCGTGAGTCAAA+TGG 0.458649 4_3:+41207723 Msa0641220:CDS
TGGTGATACGGCGGTGGTGT+TGG 0.459464 4_3:-41204805 None:intergenic
ATAATGTCCTTGTTGATGAA+AGG 0.463710 4_3:+41207853 Msa0641220:CDS
GGCCTTCTTCAGTCTCAAAA+GGG 0.464157 4_3:+41209411 Msa0641220:CDS
TGGAAAGAAGAGTATATTTG+TGG 0.465676 4_3:+41210199 Msa0641220:CDS
AAAAGAGAAGAAAGAAAGAG+AGG 0.466357 4_3:-41204592 None:intergenic
TGTTGCATGAACGTTGTTTG+TGG 0.466630 4_3:+41204989 Msa0641220:CDS
CAGTTGCATAGACTGAATAC+AGG 0.468777 4_3:-41208588 None:intergenic
AAATTACAGGAAGTTTGATT+GGG 0.471299 4_3:+41212508 Msa0641220:three_prime_UTR
CCTGAGGGGAAACTTATAAT+GGG 0.471341 4_3:+41209188 Msa0641220:CDS
GAGAATATACCTATATTAAG+TGG 0.472374 4_3:+41209381 Msa0641220:CDS
AACAAATTCTGCTTCAGTAC+AGG 0.472669 4_3:+41209223 Msa0641220:CDS
CTGATTCCTTCCCCGTCCTT+CGG 0.474070 4_3:-41208018 None:intergenic
AGGCCTCCTGCCGAAGGACG+GGG 0.474201 4_3:+41208008 Msa0641220:CDS
TGTTTGCCCTTCCCACTTGG+TGG 0.481303 4_3:-41211837 None:intergenic
GCAAGTGATGCTGGTCGAAT+TGG 0.484028 4_3:+41208284 Msa0641220:CDS
CAAGAGTTGCAGCAAATATC+GGG 0.484696 4_3:+41208074 Msa0641220:CDS
TTCCCAGCAGTGCATATCTC+TGG 0.485291 4_3:+41207536 Msa0641220:CDS
GGAGATGATGCAAGTGACTC+TGG 0.485895 4_3:+41211741 Msa0641220:CDS
CCTCACAATGTTGATTTGGA+TGG 0.486454 4_3:+41207633 Msa0641220:CDS
AGACACCCTCGTCATAGGCC+TGG 0.487047 4_3:+41211789 Msa0641220:CDS
TACGGCGGTGGTGTTGGCGG+CGG 0.488963 4_3:-41204799 None:intergenic
GACAGTCCTGAAGAGAATAG+TGG 0.489705 4_3:+41212371 Msa0641220:CDS
TGATACGGCGGTGGTGTTGG+CGG 0.490130 4_3:-41204802 None:intergenic
TAGCCAGAGATATGCACTGC+TGG 0.491104 4_3:-41207539 None:intergenic
CGATTCGGTGGCGGAAAGGT+TGG 0.493342 4_3:+41205023 Msa0641220:CDS
CGGAGGAGAAGAAGTTAGAG+AGG 0.493467 4_3:-41204717 None:intergenic
TATTGATAGCGAGGATGCAC+TGG 0.493835 4_3:+41209614 Msa0641220:CDS
GTGGAACCTCTACGTCGATT+CGG 0.494921 4_3:+41205008 Msa0641220:CDS
CCAAGTGGCTGATGCTGCCA+AGG 0.498515 4_3:+41212097 Msa0641220:CDS
GACTTCAGAGTAAAGTAAAA+GGG 0.500392 4_3:-41212452 None:intergenic
TTTGGCCAAATAATAATAGC+AGG 0.500753 4_3:+41208540 Msa0641220:CDS
ATCAACAAGGACATTATGAA+AGG 0.502025 4_3:-41207847 None:intergenic
TTGTCGTACCGGAAGTTTGA+GGG 0.502914 4_3:-41204850 None:intergenic
GAGACATACCTGAAGCAAAA+TGG 0.503082 4_3:+41212221 Msa0641220:CDS
CTTCCCCGTCCTTCGGCAGG+AGG 0.504076 4_3:-41208011 None:intergenic
GTGAGTCAAATGGTTCATCT+AGG 0.506203 4_3:+41207733 Msa0641220:CDS
GGCTAACCAATTAAATGTGA+GGG 0.506229 4_3:+41207557 Msa0641220:CDS
TCACTTGAATGAGAACCATT+GGG 0.509159 4_3:-41209336 None:intergenic
TGGCGGCGGCGGACGAGTTG+CGG 0.510909 4_3:-41204785 None:intergenic
GTTGTCTTTACCACCTGTGC+TGG 0.513012 4_3:+41209539 Msa0641220:CDS
CAAGGCCTCCTGCCGAAGGA+CGG 0.513301 4_3:+41208006 Msa0641220:CDS
TGCTTCAGGTATGTCTCCAA+CGG 0.513673 4_3:-41212215 None:intergenic
GCTTCAGGTATGTCTCCAAC+GGG 0.514701 4_3:-41212214 None:intergenic
CAGTCTATGCAACTGCAAGC+TGG 0.514895 4_3:+41208596 Msa0641220:CDS
CAAAATCGAAATTGTCGTAC+CGG 0.515610 4_3:-41204861 None:intergenic
AGTTCATGTACCGTCGGCTA+TGG 0.515740 4_3:-41204825 None:intergenic
CCTGGAGATAGAGTTGGCCT+AGG 0.516685 4_3:-41207942 None:intergenic
TGCAGTAACATTTAGCCGTA+TGG 0.517779 4_3:+41209163 Msa0641220:intron
ACTTGAATTGCCAACCGGAT+CGG 0.518323 4_3:+41212129 Msa0641220:CDS
AAATTCAGCTTCAAATGTGC+AGG 0.519112 4_3:+41212274 Msa0641220:CDS
TTCTAGAGAGCGCATTTAGG+TGG 0.520190 4_3:-41209446 None:intergenic
CCCTCCTATCTCTCAACCTG+AGG 0.521917 4_3:+41208460 Msa0641220:CDS
ATTGTCGTACCGGAAGTTTG+AGG 0.522733 4_3:-41204851 None:intergenic
TAAATGCGCTCTCTAGAAAG+TGG 0.523105 4_3:+41209451 Msa0641220:CDS
TTGTGTTTGCCCTTCCCACT+TGG 0.523559 4_3:-41211840 None:intergenic
ATTAGACTTGAATTGCCAAC+CGG 0.524003 4_3:+41212124 Msa0641220:CDS
GCAAGATATATATGAATCAC+TGG 0.525449 4_3:+41207779 Msa0641220:CDS
CCGATCTATGTGATAAGTGC+GGG 0.529734 4_3:+41205068 Msa0641220:CDS
ATGTAGAAATGCCTGAAAGC+AGG 0.533071 4_3:+41209505 Msa0641220:CDS
AGGCCTTGCTATACGTATCT+GGG 0.533919 4_3:-41207991 None:intergenic
TTCAACTCCTTGCCTCACAC+TGG 0.534815 4_3:-41212621 None:intergenic
TCCTCGATCATGACAACACT+TGG 0.535986 4_3:-41209696 None:intergenic
ATAGCTATTATATGTATAGT+GGG 0.538831 4_3:-41212567 None:intergenic
GAGTGAGGGAAGACAAAATG+AGG 0.539623 4_3:+41212313 Msa0641220:CDS
CTCCCAATGAATTGAATCCA+AGG 0.539749 4_3:+41210590 Msa0641220:CDS
CGGCGGCGGACGAGTTGCGG+TGG 0.540294 4_3:-41204782 None:intergenic
ACATAGATCGGCAAATTCAC+CGG 0.541892 4_3:-41205056 None:intergenic
TCAACAAGGACATTATGAAA+GGG 0.542098 4_3:-41207846 None:intergenic
AAGTTAGAGAGGAAATGAAA+CGG 0.542685 4_3:-41204706 None:intergenic
ATGCTTAGTGCAAGTGATGC+TGG 0.543355 4_3:+41208275 Msa0641220:CDS
CCTAGGCCAACTCTATCTCC+AGG 0.543621 4_3:+41207942 Msa0641220:CDS
TTCTCCATACACGTCCACTT+AGG 0.543699 4_3:-41210453 None:intergenic
CAGTTGGTGCTGACATGGAT+TGG 0.544785 4_3:+41209478 Msa0641220:CDS
ATTCAAGTCTAATTGTCCCT+TGG 0.544992 4_3:-41212114 None:intergenic
GAAGATTCACGATCCAGAGC+TGG 0.546355 4_3:-41211684 None:intergenic
GAAGAAAGAAAGAGAAGGTG+AGG 0.550740 4_3:-41204664 None:intergenic
CGGCTATGGTGATACGGCGG+TGG 0.550895 4_3:-41204811 None:intergenic
ATACGCAAAGGAAGGCCCTC+AGG 0.550975 4_3:-41208476 None:intergenic
ATTTGGCAAAGGAGCGGTAA+GGG 0.556170 4_3:-41207823 None:intergenic
AGCACCCAGGCCTATGACGA+GGG 0.556180 4_3:-41211794 None:intergenic
GATGATTATACTTCAAGACT+TGG 0.556252 4_3:-41204541 None:intergenic
GACACCCTCGTCATAGGCCT+GGG 0.556520 4_3:+41211790 Msa0641220:CDS
CCATTATAAGTTTCCCCTCA+GGG 0.557442 4_3:-41209187 None:intergenic
AAGTCCTGAAGTACTTGCAC+AGG 0.558364 4_3:-41206981 None:intergenic
ATGATGCAAGTGACTCTGGC+AGG 0.558412 4_3:+41211745 Msa0641220:CDS
GAACTCAGTTGGTGCTGACA+TGG 0.559385 4_3:+41209473 Msa0641220:CDS
AAGATGTGAAAGGAAAAGAA+TGG 0.562266 4_3:+41208501 Msa0641220:CDS
TTTCCGTCTAATATGCCCAA+TGG 0.563491 4_3:+41209321 Msa0641220:CDS
GATCGGGAAGACATGCAAGC+TGG 0.563741 4_3:+41212146 Msa0641220:CDS
GTTTCCCCTCAGGGTCCATA+CGG 0.563865 4_3:-41209178 None:intergenic
CTTGGCTTAACTTCTGGAGG+TGG 0.565044 4_3:-41209678 None:intergenic
CAAGAAACAAAGACAAGCAT+CGG 0.565134 4_3:+41211650 Msa0641220:CDS
CCCGCACTTATCACATAGAT+CGG 0.565675 4_3:-41205068 None:intergenic
GCTGAAACTTACTTGGGAAG+AGG 0.565759 4_3:+41209638 Msa0641220:CDS
AGAAGGTGAGGAATTAAGAG+AGG 0.566296 4_3:-41204652 None:intergenic
TATCCAGCCACCAAGTGGGA+AGG 0.566881 4_3:+41211830 Msa0641220:CDS
AAAGGTTGGATTCTTCGATC+CGG 0.567319 4_3:+41205037 Msa0641220:CDS
AGTAAAGCATCTTCTTGCCA+TGG 0.567975 4_3:+41212643 Msa0641220:three_prime_UTR
ATGCAGAAAATGATGGGATG+AGG 0.568840 4_3:+41207598 Msa0641220:CDS
ATCCAGCCACCAAGTGGGAA+GGG 0.569945 4_3:+41211831 Msa0641220:CDS
TTCTCAGGAACCAGCACAGG+TGG 0.570575 4_3:-41209549 None:intergenic
CCTCCTATCTCTCAACCTGA+GGG 0.572708 4_3:+41208461 Msa0641220:CDS
ACGTCGATTCGGTGGCGGAA+AGG 0.573751 4_3:+41205019 Msa0641220:CDS
CGGTTACCGGAGAGAAAAGT+GGG 0.573756 4_3:-41204686 None:intergenic
TACCGTCGGCTATGGTGATA+CGG 0.575072 4_3:-41204817 None:intergenic
ACTTATAATGGGGTTCAGGA+AGG 0.575522 4_3:+41209199 Msa0641220:CDS
CCTCTACGTCGATTCGGTGG+CGG 0.575763 4_3:+41205014 Msa0641220:CDS
AGCCAGAGATATGCACTGCT+GGG 0.576349 4_3:-41207538 None:intergenic
GATTTGGCAAAGGAGCGGTA+AGG 0.576714 4_3:-41207824 None:intergenic
TGTCTTGTTGTGGTCAACAC+TGG 0.577354 4_3:-41211771 None:intergenic
TCTAGAAAGTGGAACTCAGT+TGG 0.578317 4_3:+41209462 Msa0641220:CDS
GGAGATAGAGTTGGCCTAGG+AGG 0.578335 4_3:-41207939 None:intergenic
TCTAGAGAGCGCATTTAGGT+GGG 0.579194 4_3:-41209445 None:intergenic
TCCATGCAAAAGAATCTGGT+TGG 0.579415 4_3:+41206770 Msa0641220:CDS
TTCAAAGAGTGGCACAATGG+TGG 0.580676 4_3:-41208249 None:intergenic
GGAATTATGCAGAAAATGAT+GGG 0.581193 4_3:+41207592 Msa0641220:CDS
GCATGTCTTCCCGATCCGGT+TGG 0.581547 4_3:-41212139 None:intergenic
CCTCAGGTTGAGAGATAGGA+GGG 0.582109 4_3:-41208460 None:intergenic
TCTAAGCCTGGAGATAGAGT+TGG 0.583408 4_3:-41207948 None:intergenic
TCAAATGGTTCATCTAGGAC+TGG 0.583729 4_3:+41207738 Msa0641220:CDS
GATCTAGACGCCAATAGAAG+TGG 0.585121 4_3:-41207897 None:intergenic
TATCTGCAGCGTCTCCATTG+TGG 0.587990 4_3:+41206899 Msa0641220:intron
ATAGCAAGGCCTCCTGCCGA+AGG 0.591462 4_3:+41208002 Msa0641220:CDS
AGTGGGAAGAAAGAAAGAGA+AGG 0.592521 4_3:-41204669 None:intergenic
ACGGTTACCGGAGAGAAAAG+TGG 0.592961 4_3:-41204687 None:intergenic
ATACTCTTCTTTCCAAACAC+AGG 0.593392 4_3:-41210191 None:intergenic
GTCTGTATCCAGCCACCAAG+TGG 0.593579 4_3:+41211825 Msa0641220:CDS
ATGACGAGGGTGTCTTGTTG+TGG 0.595378 4_3:-41211781 None:intergenic
CAGACATTACACGTGCATGT+AGG 0.595381 4_3:-41211864 None:intergenic
ACACTTGGCTTAACTTCTGG+AGG 0.596735 4_3:-41209681 None:intergenic
TTATGAAAGGGATTTGGCAA+AGG 0.597001 4_3:-41207834 None:intergenic
CCCTCAGGTTGAGAGATAGG+AGG 0.598922 4_3:-41208461 None:intergenic
GCTTCCAAATTCTCCAACAG+AGG 0.599653 4_3:-41207688 None:intergenic
ACAGTCCTGAAGAGAATAGT+GGG 0.601508 4_3:+41212372 Msa0641220:CDS
TTCACATCTTGGATACGCAA+AGG 0.602051 4_3:-41208488 None:intergenic
TCCCAATGAATTGAATCCAA+GGG 0.602257 4_3:+41210591 Msa0641220:CDS
TGGCTGGATACAGACAATAC+AGG 0.604446 4_3:-41211817 None:intergenic
GAGGTTGCTTATTGATAGCG+AGG 0.605174 4_3:+41209605 Msa0641220:CDS
AGGGGAAGTTCATGTACCGT+CGG 0.605747 4_3:-41204831 None:intergenic
GAACCATTGGGCATATTAGA+CGG 0.606117 4_3:-41209324 None:intergenic
CATCTTGGATACGCAAAGGA+AGG 0.606572 4_3:-41208484 None:intergenic
CTCTTCTTTCCAAACACAGG+AGG 0.606920 4_3:-41210188 None:intergenic
CCATCCAAATCAACATTGTG+AGG 0.607409 4_3:-41207633 None:intergenic
TGGCTAACCAATTAAATGTG+AGG 0.608102 4_3:+41207556 Msa0641220:CDS
TGAAGAAGCAAATCTCCCGT+TGG 0.612037 4_3:+41212199 Msa0641220:CDS
CAGCGCGGAGAGAGTTTGAA+CGG 0.613892 4_3:-41204737 None:intergenic
CTCCTGCCGAAGGACGGGGA+AGG 0.614694 4_3:+41208012 Msa0641220:CDS
CTCCATACACGTCCACTTAG+GGG 0.615994 4_3:-41210451 None:intergenic
TTGCGTATCCAAGATGTGAA+AGG 0.616182 4_3:+41208491 Msa0641220:CDS
TCCATACACGTCCACTTAGG+GGG 0.618210 4_3:-41210450 None:intergenic
AGAGTGTACTTCATGTGGCA+AGG 0.623087 4_3:+41206795 Msa0641220:CDS
TTTGTTCCCTTTCATCAACA+AGG 0.624287 4_3:-41207860 None:intergenic
GAGCACCCAGGCCTATGACG+AGG 0.624956 4_3:-41211795 None:intergenic
CTTCCAAATTCTCCAACAGA+GGG 0.627135 4_3:-41207687 None:intergenic
TGTCGTACCGGAAGTTTGAG+GGG 0.627328 4_3:-41204849 None:intergenic
ACAGACAACCAATGAGAGTG+AGG 0.631032 4_3:+41212298 Msa0641220:CDS
TTCAAGTAACCAAGACCAAG+TGG 0.631930 4_3:+41212082 Msa0641220:CDS
TTAGGTTGTACACCAGTGTG+AGG 0.632561 4_3:+41212609 Msa0641220:three_prime_UTR
TTGTACACCAGTGTGAGGCA+AGG 0.633191 4_3:+41212614 Msa0641220:three_prime_UTR
CGCGGAGAGAGTTTGAACGG+AGG 0.641783 4_3:-41204734 None:intergenic
GCCGATCTATGTGATAAGTG+CGG 0.642160 4_3:+41205067 Msa0641220:CDS
GACAAGCATCGGCAAGCCAG+AGG 0.642701 4_3:+41211661 Msa0641220:CDS
CTAGACGCCAATAGAAGTGG+AGG 0.644014 4_3:-41207894 None:intergenic
CAGCTTGAAATACTTGACAC+TGG 0.646808 4_3:+41206941 Msa0641220:CDS
TTGAAGCAACACATCCACAA+TGG 0.648024 4_3:-41206913 None:intergenic
GTAATTCTGGGCCAATATCG+CGG 0.648517 4_3:-41208047 None:intergenic
TATTTGTGGTACGATCTACT+GGG 0.648538 4_3:+41210213 Msa0641220:CDS
TCTGTATCCAGCCACCAAGT+GGG 0.649632 4_3:+41211826 Msa0641220:CDS
GGTTCGGAGAATGAAGCAAG+AGG 0.650245 4_3:+41212044 Msa0641220:CDS
CCGCCACCGAATCGACGTAG+AGG 0.651077 4_3:-41205014 None:intergenic
GCCAAGTGTTGTCATGATCG+AGG 0.651574 4_3:+41209695 Msa0641220:CDS
AGTTGCATAGACTGAATACA+GGG 0.651610 4_3:-41208587 None:intergenic
ACTGGAGCTGAAACTTACTT+GGG 0.656896 4_3:+41209632 Msa0641220:CDS
TTTCCCAGATACGTATAGCA+AGG 0.657040 4_3:+41207988 Msa0641220:CDS
AACTGGAGTTAAATGTCGAG+AGG 0.658373 4_3:-41212018 None:intergenic
CTTAGAAGGAAACACAGGCA+TGG 0.658844 4_3:+41207965 Msa0641220:CDS
CCAGGCTTAGAAGGAAACAC+AGG 0.660663 4_3:+41207960 Msa0641220:CDS
GCTAACCAATTAAATGTGAG+GGG 0.663001 4_3:+41207558 Msa0641220:CDS
CAAGTGGCTGATGCTGCCAA+GGG 0.663194 4_3:+41212098 Msa0641220:CDS
ACCACAGGATAAGTGAGCAG+TGG 0.664291 4_3:+41210373 Msa0641220:intron
GAACCTCTACGTCGATTCGG+TGG 0.665625 4_3:+41205011 Msa0641220:CDS
CTGAGGGGAAACTTATAATG+GGG 0.667153 4_3:+41209189 Msa0641220:CDS
TCAGCAATCATGGAGGACCA+AGG 0.667770 4_3:+41211974 Msa0641220:CDS
GATGTATTAATATATTACCA+TGG 0.669495 4_3:-41212660 None:intergenic
TCTGCATGACAGTTAAACGC+CGG 0.670607 4_3:+41211883 Msa0641220:CDS
CGCCGTATCACCATAGCCGA+CGG 0.670797 4_3:+41204815 Msa0641220:five_prime_UTR
TTTAGCCGTATGGACCCTGA+GGG 0.672269 4_3:+41209173 Msa0641220:CDS
AAAGGGATTTGGCAAAGGAG+CGG 0.674141 4_3:-41207829 None:intergenic
GTTCGGAGAATGAAGCAAGA+GGG 0.686630 4_3:+41212045 Msa0641220:CDS
CAGACAACCAATGAGAGTGA+GGG 0.686644 4_3:+41212299 Msa0641220:CDS
ATTTAGCCGTATGGACCCTG+AGG 0.687200 4_3:+41209172 Msa0641220:CDS
TGATGCTTTAGCAAATGCTG+CGG 0.695273 4_3:+41211713 Msa0641220:CDS
TTGCATAGACTGAATACAGG+GGG 0.707100 4_3:-41208585 None:intergenic
TGGAGAGAGTGTACTTCATG+TGG 0.711681 4_3:+41206790 Msa0641220:CDS
CAGACAATACAGGAGCACCC+AGG 0.725333 4_3:-41211807 None:intergenic
CTTGAAATACTTGACACTGG+TGG 0.733966 4_3:+41206944 Msa0641220:CDS
TTTGCATTTGTGTTGCAGCG+CGG 0.736535 4_3:-41204752 None:intergenic
TTAGCCGTATGGACCCTGAG+GGG 0.752430 4_3:+41209174 Msa0641220:CDS
GTTGCATAGACTGAATACAG+GGG 0.770443 4_3:-41208586 None:intergenic
CGTCGGCTATGGTGATACGG+CGG 0.788167 4_3:-41204814 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTAAATTTTAATTT+TGG + chr4_3:41210860-41210879 Msa0641220:intron 0.0%
!!! TTTTTTGTTAATTTGAATTT+GGG + chr4_3:41205308-41205327 Msa0641220:intron 10.0%
!! TCAAAAATAAAATAAAATTG+AGG + chr4_3:41205345-41205364 Msa0641220:intron 10.0%
!!! AATTTATTTTTCCATTTTTT+GGG - chr4_3:41205707-41205726 None:intergenic 10.0%
!!! TTTTTTATTTTTTGAAAACT+CGG - chr4_3:41205947-41205966 None:intergenic 10.0%
!!! TATATATTTATTTTTTTAGG+TGG - chr4_3:41206120-41206139 None:intergenic 10.0%
!!! CCATATATATTTATTTTTTT+AGG - chr4_3:41206123-41206142 None:intergenic 10.0%
!! CCTAAAAAAATAAATATATA+TGG + chr4_3:41206120-41206139 Msa0641220:intron 10.0%
!! TTCTTTAAATTGTTAATTAT+AGG + chr4_3:41208120-41208139 Msa0641220:intron 10.0%
!!! ATTATTTAGATTTTTTTCTT+TGG + chr4_3:41208735-41208754 Msa0641220:intron 10.0%
!! AGAAAAAAAATATTATATAG+AGG - chr4_3:41208853-41208872 None:intergenic 10.0%
!!! AAAATTTAGTTCAATATTTT+TGG - chr4_3:41208967-41208986 None:intergenic 10.0%
!!! TTATTTGATACATTTTTTTT+TGG + chr4_3:41209078-41209097 Msa0641220:intron 10.0%
!! TAAAATTTAAATAAAAGACT+GGG - chr4_3:41210856-41210875 None:intergenic 10.0%
!! TTAAAATTTAAATAAAAGAC+TGG - chr4_3:41210857-41210876 None:intergenic 10.0%
!!! GTTTTTTGTTAATTTGAATT+TGG + chr4_3:41205307-41205326 Msa0641220:intron 15.0%
!!! TTTTTGTTAATTTGAATTTG+GGG + chr4_3:41205309-41205328 Msa0641220:intron 15.0%
!!! ATAGTTTAAAACGTTATTTT+TGG + chr4_3:41205564-41205583 Msa0641220:intron 15.0%
!!! TATCAGCAATAATTATATTT+TGG - chr4_3:41205662-41205681 None:intergenic 15.0%
!!! CAATTTATTTTTCCATTTTT+TGG - chr4_3:41205708-41205727 None:intergenic 15.0%
!!! GAGTTTTCAAAAAATAAAAA+AGG + chr4_3:41205946-41205965 Msa0641220:intron 15.0%
!! AAAATCATATATAAACAAAC+AGG - chr4_3:41206146-41206165 None:intergenic 15.0%
!!! TTATATATGATTTTGAAGTT+TGG + chr4_3:41206152-41206171 Msa0641220:intron 15.0%
!!! ATTTTTTACTTATTTGAAGT+TGG + chr4_3:41206652-41206671 Msa0641220:intron 15.0%
!!! TTTTTTACTTATTTGAAGTT+GGG + chr4_3:41206653-41206672 Msa0641220:intron 15.0%
!!! ATTTCAATAGTCTTTTAATT+TGG + chr4_3:41210339-41210358 Msa0641220:intron 15.0%
!! AAAATTTAAATAAAAGACTG+GGG - chr4_3:41210855-41210874 None:intergenic 15.0%
!! TTATTGTTGTGAATTTATGA+AGG + chr4_3:41204934-41204953 Msa0641220:intron 20.0%
!!! TGATTTGATTTGAAATTGTA+CGG + chr4_3:41205153-41205172 Msa0641220:intron 20.0%
!!! TGTTTGTTAAATTGAATTTG+AGG + chr4_3:41205247-41205266 Msa0641220:intron 20.0%
!! AATCAACAACAACATAAAAA+GGG - chr4_3:41205448-41205467 None:intergenic 20.0%
!! AAATAAAATGTATGTAGTTG+CGG + chr4_3:41205514-41205533 Msa0641220:intron 20.0%
!! AAAAAAGCTGGATAATTATA+TGG + chr4_3:41206088-41206107 Msa0641220:intron 20.0%
!! ATTTACATCTATACTAATCA+TGG - chr4_3:41206632-41206651 None:intergenic 20.0%
!! CATTAAAATACAAAAGTTGT+GGG - chr4_3:41206847-41206866 None:intergenic 20.0%
!! TCATTAAAATACAAAAGTTG+TGG - chr4_3:41206848-41206867 None:intergenic 20.0%
!!! TTTTGTATTTTAATGAGCTA+TGG + chr4_3:41206852-41206871 Msa0641220:intron 20.0%
!! GGTTATTTATATATGTAACA+AGG - chr4_3:41207027-41207046 None:intergenic 20.0%
!! AAATAGATGAAATATCGTTT+CGG + chr4_3:41207068-41207087 Msa0641220:intron 20.0%
!!! ATCTTGTTTCATTATGTAAT+TGG + chr4_3:41207206-41207225 Msa0641220:intron 20.0%
!!! ATACAAAATAACCCAATTTT+GGG - chr4_3:41207399-41207418 None:intergenic 20.0%
!!! AATACAAAATAACCCAATTT+TGG - chr4_3:41207400-41207419 None:intergenic 20.0%
!! TAAAGAACTAATTACAAAGT+TGG - chr4_3:41208107-41208126 None:intergenic 20.0%
!!! TAATAATGGGTAAATACAAA+AGG - chr4_3:41208366-41208385 None:intergenic 20.0%
!!! ATTTTTTCAGTTCTAAGAAA+TGG - chr4_3:41208418-41208437 None:intergenic 20.0%
!! TTCTTAGAACTGAAAAAATA+TGG + chr4_3:41208419-41208438 Msa0641220:intron 20.0%
!!! ACTAAATTTTCTTGTGTTTT+TGG + chr4_3:41208977-41208996 Msa0641220:intron 20.0%
!!! CTAAATTTTCTTGTGTTTTT+GGG + chr4_3:41208978-41208997 Msa0641220:intron 20.0%
!!! TAAATTTTCTTGTGTTTTTG+GGG + chr4_3:41208979-41208998 Msa0641220:intron 20.0%
!! TATTAAATTACCTATTAAGC+AGG + chr4_3:41209293-41209312 Msa0641220:intron 20.0%
!! AAAATATAAGTTCTATGACA+TGG + chr4_3:41209956-41209975 Msa0641220:intron 20.0%
!!! TGCATCTTTTATATTTTCTA+TGG + chr4_3:41210268-41210287 Msa0641220:intron 20.0%
!! CAATAAATACTACTAGTAAA+TGG + chr4_3:41210705-41210724 Msa0641220:intron 20.0%
!!! TTTAGTAATAGATTTTCTCA+GGG + chr4_3:41210926-41210945 Msa0641220:intron 20.0%
!! AAAAAAGAAGAAGAAAAACT+AGG - chr4_3:41211031-41211050 None:intergenic 20.0%
!!! CTTTTAAAGAGATACAAAAA+GGG - chr4_3:41211054-41211073 None:intergenic 20.0%
!!! CTTTTTGTATCTCTTTAAAA+GGG + chr4_3:41211053-41211072 Msa0641220:intron 20.0%
!! TTAGTTCATATGTTTGAATT+AGG + chr4_3:41211122-41211141 Msa0641220:intron 20.0%
!! TTCAAAACATATAATTTGAG+AGG - chr4_3:41211482-41211501 None:intergenic 20.0%
!!! GATTTTGTTACTATTATACA+TGG + chr4_3:41211553-41211572 Msa0641220:intron 20.0%
!!! TGATGGATATAAATGTTTTA+GGG - chr4_3:41211615-41211634 None:intergenic 20.0%
!!! ATGATGGATATAAATGTTTT+AGG - chr4_3:41211616-41211635 None:intergenic 20.0%
!!! AACATTTATATCCATCATTT+TGG + chr4_3:41211618-41211637 Msa0641220:intron 20.0%
!! TTACTTGAATCTAATTCATT+TGG - chr4_3:41212071-41212090 None:intergenic 20.0%
!! ATAGCTATTATATGTATAGT+GGG - chr4_3:41212570-41212589 None:intergenic 20.0%
!! TATAGCTATTATATGTATAG+TGG - chr4_3:41212571-41212590 None:intergenic 20.0%
!! GATGTATTAATATATTACCA+TGG - chr4_3:41212663-41212682 None:intergenic 20.0%
!! GACAATTTCGATTTTGAATT+CGG + chr4_3:41204868-41204887 Msa0641220:five_prime_UTR 25.0%
!!! TGAGTTGATTCAAATTGTTA+GGG + chr4_3:41204900-41204919 Msa0641220:intron 25.0%
!! CAGTGGATATTTGAATTTTT+AGG + chr4_3:41205182-41205201 Msa0641220:intron 25.0%
! GAATCAACAACAACATAAAA+AGG - chr4_3:41205449-41205468 None:intergenic 25.0%
!!! TGTTGTTGATTCTTTATAGT+TGG + chr4_3:41205457-41205476 Msa0641220:intron 25.0%
! TGATAAATACTAAGTAGCAT+AGG + chr4_3:41205677-41205696 Msa0641220:intron 25.0%
!!! TTTATTTTTTTAGGTGGAAC+AGG - chr4_3:41206114-41206133 None:intergenic 25.0%
! TCATAAATTCTGATCTGATT+GGG - chr4_3:41207113-41207132 None:intergenic 25.0%
! ATCATAAATTCTGATCTGAT+TGG - chr4_3:41207114-41207133 None:intergenic 25.0%
! TTGGTATGTAAATTATTGAC+TGG + chr4_3:41207225-41207244 Msa0641220:intron 25.0%
! ATAGTTAGACTTCAAAAATG+AGG - chr4_3:41207371-41207390 None:intergenic 25.0%
! TAACTATATCTTCCCAAAAT+TGG + chr4_3:41207384-41207403 Msa0641220:intron 25.0%
! AACTATATCTTCCCAAAATT+GGG + chr4_3:41207385-41207404 Msa0641220:intron 25.0%
!! AAGTTATCATTGCCAATTTT+GGG - chr4_3:41207455-41207474 None:intergenic 25.0%
! ATTTCCTTAACCATGATTTA+TGG + chr4_3:41208208-41208227 Msa0641220:intron 25.0%
!! GGATGTTTCAATTTAGATTT+TGG + chr4_3:41208522-41208541 Msa0641220:CDS 25.0%
! TACATCCTGCTATTATTATT+TGG - chr4_3:41208548-41208567 None:intergenic 25.0%
!!! AAATTGCCCATTTTAAGAAT+TGG + chr4_3:41208658-41208677 Msa0641220:intron 25.0%
! AAGGTTCCAATTCTTAAAAT+GGG - chr4_3:41208667-41208686 None:intergenic 25.0%
! AAACACATACAGAAAAAAGA+AGG - chr4_3:41208686-41208705 None:intergenic 25.0%
! GAGAATATACCTATATTAAG+TGG + chr4_3:41209381-41209400 Msa0641220:CDS 25.0%
! AAGAAAAGAACTCGAAATAT+TGG + chr4_3:41209570-41209589 Msa0641220:CDS 25.0%
! AGAAAAGAACTCGAAATATT+GGG + chr4_3:41209571-41209590 Msa0641220:CDS 25.0%
!! TATAGTTTAACTTTGACGTA+TGG + chr4_3:41210135-41210154 Msa0641220:intron 25.0%
!! AAGGTCTTACTAAAAAGTTT+TGG - chr4_3:41210531-41210550 None:intergenic 25.0%
!!! AATCTTTTGAGAATGAACAA+TGG + chr4_3:41210622-41210641 Msa0641220:CDS 25.0%
!!! TTCTGAGAGAATTTTTCAAT+TGG + chr4_3:41210769-41210788 Msa0641220:intron 25.0%
!! CTTTAGTAATAGATTTTCTC+AGG + chr4_3:41210925-41210944 Msa0641220:intron 25.0%
!!! CCTTTTAAAGAGATACAAAA+AGG - chr4_3:41211055-41211074 None:intergenic 25.0%
!! CCTTTTTGTATCTCTTTAAA+AGG + chr4_3:41211052-41211071 Msa0641220:intron 25.0%
! AAATGTGTAAATTAGATGAG+AGG - chr4_3:41211104-41211123 None:intergenic 25.0%
!!! ATTTTTCAACAATCCAAAGA+TGG - chr4_3:41211250-41211269 None:intergenic 25.0%
!!! GAAAAAGTCAATTTTTCAAG+TGG - chr4_3:41211361-41211380 None:intergenic 25.0%
! TGAATTCTATTCCAAAATGA+TGG - chr4_3:41211632-41211651 None:intergenic 25.0%
!! TTCAAGAAAGTGAATTGTTT+TGG - chr4_3:41212409-41212428 None:intergenic 25.0%
! AAAGGGAAAAAAATGAAGAT+TGG - chr4_3:41212438-41212457 None:intergenic 25.0%
! AAAATTACAGGAAGTTTGAT+TGG + chr4_3:41212507-41212526 Msa0641220:three_prime_UTR 25.0%
! AAATTACAGGAAGTTTGATT+GGG + chr4_3:41212508-41212527 Msa0641220:three_prime_UTR 25.0%
GATGATTATACTTCAAGACT+TGG - chr4_3:41204544-41204563 None:intergenic 30.0%
AAAAGAGAAGAAAGAAAGAG+AGG - chr4_3:41204595-41204614 None:intergenic 30.0%
AAGTTAGAGAGGAAATGAAA+CGG - chr4_3:41204709-41204728 None:intergenic 30.0%
!! GATTTTGAATTCGGTGAATT+TGG + chr4_3:41204877-41204896 Msa0641220:intron 30.0%
!! GTGAGTTGATTCAAATTGTT+AGG + chr4_3:41204899-41204918 Msa0641220:intron 30.0%
TTGTGAATTTATGAAGGTTG+TGG + chr4_3:41204940-41204959 Msa0641220:intron 30.0%
TGTGGAATTGAAGTTGAAAA+TGG + chr4_3:41204958-41204977 Msa0641220:exon 30.0%
!! ATGTTTGCGCTTTAACTTTT+TGG + chr4_3:41205482-41205501 Msa0641220:intron 30.0%
!!! TTTTTTGAAAACTCGGTATC+CGG - chr4_3:41205940-41205959 None:intergenic 30.0%
TATGTCTACATCAAAAAAGC+TGG + chr4_3:41206076-41206095 Msa0641220:intron 30.0%
CTGCAGATAATAGAACAAAT+AGG - chr4_3:41206888-41206907 None:intergenic 30.0%
TATTTCATCTATTTCCAGAG+AGG - chr4_3:41207062-41207081 None:intergenic 30.0%
AATGTATGATGATAGATAGC+AGG + chr4_3:41207154-41207173 Msa0641220:intron 30.0%
!!! GTTGTTGCTTTTTGCTTATA+TGG + chr4_3:41207329-41207348 Msa0641220:intron 30.0%
! CAAGTTATCATTGCCAATTT+TGG - chr4_3:41207456-41207475 None:intergenic 30.0%
AATGAAAAGCCTAATGAATC+TGG + chr4_3:41207489-41207508 Msa0641220:CDS 30.0%
GGAATTATGCAGAAAATGAT+GGG + chr4_3:41207592-41207611 Msa0641220:CDS 30.0%
GCAAGATATATATGAATCAC+TGG + chr4_3:41207779-41207798 Msa0641220:CDS 30.0%
TCAACAAGGACATTATGAAA+GGG - chr4_3:41207849-41207868 None:intergenic 30.0%
ATCAACAAGGACATTATGAA+AGG - chr4_3:41207850-41207869 None:intergenic 30.0%
! ATAATGTCCTTGTTGATGAA+AGG + chr4_3:41207853-41207872 Msa0641220:CDS 30.0%
! TAATGTCCTTGTTGATGAAA+GGG + chr4_3:41207854-41207873 Msa0641220:CDS 30.0%
AACTCTTGATCTGTAATTCT+GGG - chr4_3:41208062-41208081 None:intergenic 30.0%
!! GTTAAGGAAATGTTTTTCAG+AGG - chr4_3:41208199-41208218 None:intergenic 30.0%
CATACCATAAATCATGGTTA+AGG - chr4_3:41208215-41208234 None:intergenic 30.0%
CTTGAACATACCATAAATCA+TGG - chr4_3:41208221-41208240 None:intergenic 30.0%
! ATTCTTTTCCTTTCACATCT+TGG - chr4_3:41208502-41208521 None:intergenic 30.0%
AAGATGTGAAAGGAAAAGAA+TGG + chr4_3:41208501-41208520 Msa0641220:CDS 30.0%
TTTGGCCAAATAATAATAGC+AGG + chr4_3:41208540-41208559 Msa0641220:CDS 30.0%
GAAGGTTCCAATTCTTAAAA+TGG - chr4_3:41208668-41208687 None:intergenic 30.0%
GCTGCAATATAAGCTAAATT+TGG + chr4_3:41208710-41208729 Msa0641220:intron 30.0%
!! GTTTGCTATATGAGCTAAAA+TGG - chr4_3:41209255-41209274 None:intergenic 30.0%
ATTCTCATAAACACCAGAAT+AGG - chr4_3:41209367-41209386 None:intergenic 30.0%
CCAGAATAACCACTTAATAT+AGG - chr4_3:41209393-41209412 None:intergenic 30.0%
CCTATATTAAGTGGTTATTC+TGG + chr4_3:41209390-41209409 Msa0641220:CDS 30.0%
ATATTGGGTCAAAAAGTAAG+AGG + chr4_3:41209586-41209605 Msa0641220:CDS 30.0%
TTCTGATATTTAGATTCACC+AGG - chr4_3:41209935-41209954 None:intergenic 30.0%
AAAATTTGCAACTCCAATAC+TGG - chr4_3:41210020-41210039 None:intergenic 30.0%
GAACTTACTTCTATTCATTC+AGG + chr4_3:41210163-41210182 Msa0641220:intron 30.0%
! TGGAAAGAAGAGTATATTTG+TGG + chr4_3:41210199-41210218 Msa0641220:CDS 30.0%
TTTCAATTGGCAGTAACAAA+TGG + chr4_3:41210782-41210801 Msa0641220:intron 30.0%
! TTTTGCAATATGTCTGCTTA+TGG + chr4_3:41210805-41210824 Msa0641220:intron 30.0%
TTTGCAATATGTCTGCTTAT+GGG + chr4_3:41210806-41210825 Msa0641220:intron 30.0%
CATCTGATCCAAATTTAAGA+GGG - chr4_3:41210983-41211002 None:intergenic 30.0%
!!! AAAGTCAATTTTTCAAGTGG+AGG - chr4_3:41211358-41211377 None:intergenic 30.0%
CAATATGACAAGAATGTGAT+GGG + chr4_3:41211385-41211404 Msa0641220:intron 30.0%
TAACAAAAGCAACAACGATA+TGG - chr4_3:41211422-41211441 None:intergenic 30.0%
! ATATAATTTGAGAGGTACAC+AGG - chr4_3:41211474-41211493 None:intergenic 30.0%
TTGATCATGCAGCATAATTT+GGG - chr4_3:41211526-41211545 None:intergenic 30.0%
GACTTCAGAGTAAAGTAAAA+GGG - chr4_3:41212455-41212474 None:intergenic 30.0%
TGACTTCAGAGTAAAGTAAA+AGG - chr4_3:41212456-41212475 None:intergenic 30.0%
TGCGTAAGCTATAAAATTAC+AGG + chr4_3:41212495-41212514 Msa0641220:three_prime_UTR 30.0%
! AATGCTGAAGTTTGTGTTTT+AGG + chr4_3:41212591-41212610 Msa0641220:three_prime_UTR 30.0%
CAAAATCGAAATTGTCGTAC+CGG - chr4_3:41204864-41204883 None:intergenic 35.0%
AAATTGTACGGATCAAACAG+TGG + chr4_3:41205165-41205184 Msa0641220:intron 35.0%
AAAGGGTCAAAACGACAAAA+CGG - chr4_3:41205431-41205450 None:intergenic 35.0%
GCATAGGATTTCCCAAAAAA+TGG + chr4_3:41205693-41205712 Msa0641220:intron 35.0%
AAACGCCAGATATTGTTTGT+AGG + chr4_3:41205749-41205768 Msa0641220:intron 35.0%
TTAGGCCTACAAACAATATC+TGG - chr4_3:41205757-41205776 None:intergenic 35.0%
TAGATATTGTCTGTTGTGCT+AGG - chr4_3:41205972-41205991 None:intergenic 35.0%
! AGTTAGCTGAACATTTTCTG+TGG + chr4_3:41205991-41206010 Msa0641220:intron 35.0%
CTGAAAACTCACACTTAAAG+CGG - chr4_3:41206042-41206061 None:intergenic 35.0%
AGTTTGGAAAGAGCTTTCTT+TGG + chr4_3:41206168-41206187 Msa0641220:intron 35.0%
TGTAGTCACCAGTAATTGTA+GGG + chr4_3:41206460-41206479 Msa0641220:intron 35.0%
AAGCTCAGAGTGAAAATAGT+AGG + chr4_3:41206529-41206548 Msa0641220:intron 35.0%
!! TAGAGCATGAAGCTATTTCT+TGG - chr4_3:41206684-41206703 None:intergenic 35.0%
ATGTTCCATGCAAAAGAATC+TGG + chr4_3:41206766-41206785 Msa0641220:CDS 35.0%
AAGTTGTGGGTAAAGAAAAG+TGG - chr4_3:41206834-41206853 None:intergenic 35.0%
CCAGAGAGGTAAATCATAAA+TGG - chr4_3:41207048-41207067 None:intergenic 35.0%
CCATTTATGATTTACCTCTC+TGG + chr4_3:41207045-41207064 Msa0641220:intron 35.0%
AATCGTGCTCTTCCATATAT+AGG + chr4_3:41207304-41207323 Msa0641220:intron 35.0%
AAGCAACAACCTCCTATATA+TGG - chr4_3:41207319-41207338 None:intergenic 35.0%
TAACTGTATCCTCCCAAAAT+TGG + chr4_3:41207440-41207459 Msa0641220:intron 35.0%
! TTATCATTGCCAATTTTGGG+AGG - chr4_3:41207452-41207471 None:intergenic 35.0%
!! TTTGCTGTTCCAGATTCATT+AGG - chr4_3:41207501-41207520 None:intergenic 35.0%
TGGCTAACCAATTAAATGTG+AGG + chr4_3:41207556-41207575 Msa0641220:CDS 35.0%
GGCTAACCAATTAAATGTGA+GGG + chr4_3:41207557-41207576 Msa0641220:CDS 35.0%
GCTAACCAATTAAATGTGAG+GGG + chr4_3:41207558-41207577 Msa0641220:CDS 35.0%
GGGAATTATGCAGAAAATGA+TGG + chr4_3:41207591-41207610 Msa0641220:CDS 35.0%
! CAAACCTCACAATGTTGATT+TGG + chr4_3:41207629-41207648 Msa0641220:CDS 35.0%
! TCTGGTTTGATTTCTCTAGA+AGG - chr4_3:41207660-41207679 None:intergenic 35.0%
CAATTTCATCGTGAGTCAAA+TGG + chr4_3:41207723-41207742 Msa0641220:CDS 35.0%
TTATGAAAGGGATTTGGCAA+AGG - chr4_3:41207837-41207856 None:intergenic 35.0%
AGGACATTATGAAAGGGATT+TGG - chr4_3:41207843-41207862 None:intergenic 35.0%
TTTGTTCCCTTTCATCAACA+AGG - chr4_3:41207863-41207882 None:intergenic 35.0%
! ATCTTTTACCTAAACCTCCT+AGG + chr4_3:41207925-41207944 Msa0641220:CDS 35.0%
CAACTCTTGATCTGTAATTC+TGG - chr4_3:41208063-41208082 None:intergenic 35.0%
TCAAGAGTTGCAGCAAATAT+CGG + chr4_3:41208073-41208092 Msa0641220:CDS 35.0%
! CTAAGCATCTTTTCAAAGAG+TGG - chr4_3:41208263-41208282 None:intergenic 35.0%
! ATTACTTCAGCACATGCTTT+TGG - chr4_3:41208323-41208342 None:intergenic 35.0%
GAAAAAATATGGCATTGTGC+AGG + chr4_3:41208430-41208449 Msa0641220:intron 35.0%
!! AGCAGGATGTATGTTTTAGA+AGG + chr4_3:41208557-41208576 Msa0641220:CDS 35.0%
!!! GCAGGATGTATGTTTTAGAA+GGG + chr4_3:41208558-41208577 Msa0641220:CDS 35.0%
!!! CAGGATGTATGTTTTAGAAG+GGG + chr4_3:41208559-41208578 Msa0641220:CDS 35.0%
AGTTGCATAGACTGAATACA+GGG - chr4_3:41208590-41208609 None:intergenic 35.0%
! ATTTGTTAGCATATTGAGCC+AGG - chr4_3:41208801-41208820 None:intergenic 35.0%
!!! TTTTCTTGTGTTTTTGGGGA+TGG + chr4_3:41208983-41209002 Msa0641220:intron 35.0%
!!! TTTCTTGTGTTTTTGGGGAT+GGG + chr4_3:41208984-41209003 Msa0641220:intron 35.0%
AACAAATTCTGCTTCAGTAC+AGG + chr4_3:41209223-41209242 Msa0641220:CDS 35.0%
GGAAAAGTTTCCTGCTTAAT+AGG - chr4_3:41209306-41209325 None:intergenic 35.0%
TCACTTGAATGAGAACCATT+GGG - chr4_3:41209339-41209358 None:intergenic 35.0%
TTCACTTGAATGAGAACCAT+TGG - chr4_3:41209340-41209359 None:intergenic 35.0%
TCAAGTGAAACTTCCTATTC+TGG + chr4_3:41209351-41209370 Msa0641220:CDS 35.0%
!!! TTTCGAGTTCTTTTCTTCTC+AGG - chr4_3:41209567-41209586 None:intergenic 35.0%
ATACTCTTCTTTCCAAACAC+AGG - chr4_3:41210194-41210213 None:intergenic 35.0%
ATATTTGTGGTACGATCTAC+TGG + chr4_3:41210212-41210231 Msa0641220:CDS 35.0%
TATTTGTGGTACGATCTACT+GGG + chr4_3:41210213-41210232 Msa0641220:CDS 35.0%
AGTGTGATAGTTGCCAAAAA+TGG + chr4_3:41210400-41210419 Msa0641220:CDS 35.0%
TCCCAATGAATTGAATCCAA+GGG + chr4_3:41210591-41210610 Msa0641220:CDS 35.0%
TCCCTTGGATTCAATTCATT+GGG - chr4_3:41210595-41210614 None:intergenic 35.0%
TTCCCTTGGATTCAATTCAT+TGG - chr4_3:41210596-41210615 None:intergenic 35.0%
AAAAGATTATCCAGTTCCCT+TGG - chr4_3:41210610-41210629 None:intergenic 35.0%
! GTAACTATAAAAGCATAGCG+TGG - chr4_3:41210678-41210697 None:intergenic 35.0%
GTTGACATTTCACTAAAGCT+AGG + chr4_3:41210743-41210762 Msa0641220:intron 35.0%
GCATCTGATCCAAATTTAAG+AGG - chr4_3:41210984-41211003 None:intergenic 35.0%
CAGAAAGTAAACATATGCAC+AGG + chr4_3:41211179-41211198 Msa0641220:intron 35.0%
AAGTAAACATATGCACAGGA+TGG + chr4_3:41211183-41211202 Msa0641220:intron 35.0%
GCACTATATGTTTCCATCTT+TGG + chr4_3:41211234-41211253 Msa0641220:intron 35.0%
AGACTGTTAGTAGATGTACT+AGG - chr4_3:41211313-41211332 None:intergenic 35.0%
CCATCACATTCTTGTCATAT+TGG - chr4_3:41211387-41211406 None:intergenic 35.0%
CCAATATGACAAGAATGTGA+TGG + chr4_3:41211384-41211403 Msa0641220:intron 35.0%
CTTGATCATGCAGCATAATT+TGG - chr4_3:41211527-41211546 None:intergenic 35.0%
CAAATTATGCTGCATGATCA+AGG + chr4_3:41211525-41211544 Msa0641220:intron 35.0%
CAAGAAACAAAGACAAGCAT+CGG + chr4_3:41211650-41211669 Msa0641220:CDS 35.0%
! CTTTTTCTTTCGCATCATCA+GGG - chr4_3:41211916-41211935 None:intergenic 35.0%
CTCAGAAAAATCAGCAATCA+TGG + chr4_3:41211964-41211983 Msa0641220:CDS 35.0%
AGAAAAATCAGCAATCATGG+AGG + chr4_3:41211967-41211986 Msa0641220:CDS 35.0%
!! TTTAACTCCAGTTGATGGTT+CGG + chr4_3:41212028-41212047 Msa0641220:CDS 35.0%
ATTCAAGTCTAATTGTCCCT+TGG - chr4_3:41212117-41212136 None:intergenic 35.0%
ATTAGACTTGAATTGCCAAC+CGG + chr4_3:41212124-41212143 Msa0641220:CDS 35.0%
! TAGAAAGACCATTTTGCTTC+AGG - chr4_3:41212232-41212251 None:intergenic 35.0%
AAATTCAGCTTCAAATGTGC+AGG + chr4_3:41212274-41212293 Msa0641220:CDS 35.0%
GGAAAAAAATGAAGATTGGC+AGG - chr4_3:41212434-41212453 None:intergenic 35.0%
TAGTGGGAAAATTGACAGTT+AGG - chr4_3:41212554-41212573 None:intergenic 35.0%
AGAAGGTGAGGAATTAAGAG+AGG - chr4_3:41204655-41204674 None:intergenic 40.0%
GAAGAAAGAAAGAGAAGGTG+AGG - chr4_3:41204667-41204686 None:intergenic 40.0%
AGTGGGAAGAAAGAAAGAGA+AGG - chr4_3:41204672-41204691 None:intergenic 40.0%
!! TTTCTTCCCACTTTTCTCTC+CGG + chr4_3:41204680-41204699 Msa0641220:five_prime_UTR 40.0%
AGAGGAAATGAAACGGTTAC+CGG - chr4_3:41204702-41204721 None:intergenic 40.0%
TGTTGCATGAACGTTGTTTG+TGG + chr4_3:41204989-41205008 Msa0641220:CDS 40.0%
AAAGGTTGGATTCTTCGATC+CGG + chr4_3:41205037-41205056 Msa0641220:CDS 40.0%
ACATAGATCGGCAAATTCAC+CGG - chr4_3:41205059-41205078 None:intergenic 40.0%
ATGTATGTAGTTGCGGTTGT+TGG + chr4_3:41205521-41205540 Msa0641220:intron 40.0%
!!! CATAGGAGTGTGCTTTTTCA+AGG + chr4_3:41205807-41205826 Msa0641220:intron 40.0%
ATGTACTAGCCCATCGAAAT+TGG - chr4_3:41205856-41205875 None:intergenic 40.0%
TACATCCAGAGCTTTGCTTA+TGG + chr4_3:41205871-41205890 Msa0641220:intron 40.0%
ATTGTCCATAAGCAAAGCTC+TGG - chr4_3:41205879-41205898 None:intergenic 40.0%
AGAGCTTTGCTTATGGACAA+TGG + chr4_3:41205878-41205897 Msa0641220:intron 40.0%
GAGCTTTGCTTATGGACAAT+GGG + chr4_3:41205879-41205898 Msa0641220:intron 40.0%
TATGGACAATGGGATTCGAT+TGG + chr4_3:41205889-41205908 Msa0641220:intron 40.0%
! ACATTTTCTGTGGTTACCCT+AGG + chr4_3:41206001-41206020 Msa0641220:intron 40.0%
ATGAACCGTCAGATCATGAT+CGG - chr4_3:41206352-41206371 None:intergenic 40.0%
GTGTAGTCACCAGTAATTGT+AGG + chr4_3:41206459-41206478 Msa0641220:intron 40.0%
CCAGTAATTGTAGGGAATCT+CGG + chr4_3:41206468-41206487 Msa0641220:intron 40.0%
TCATGCTCTAACTCTTACTC+TGG + chr4_3:41206694-41206713 Msa0641220:intron 40.0%
TCCATGCAAAAGAATCTGGT+TGG + chr4_3:41206770-41206789 Msa0641220:CDS 40.0%
! TCCAACCAGATTCTTTTGCA+TGG - chr4_3:41206774-41206793 None:intergenic 40.0%
TTGAAGCAACACATCCACAA+TGG - chr4_3:41206916-41206935 None:intergenic 40.0%
CAGCTTGAAATACTTGACAC+TGG + chr4_3:41206941-41206960 Msa0641220:CDS 40.0%
CTTGAAATACTTGACACTGG+TGG + chr4_3:41206944-41206963 Msa0641220:CDS 40.0%
ATTACCTGTGCAAGTACTTC+AGG + chr4_3:41206977-41206996 Msa0641220:CDS 40.0%
GCATACCCCTCACATTTAAT+TGG - chr4_3:41207566-41207585 None:intergenic 40.0%
! ATGCAGAAAATGATGGGATG+AGG + chr4_3:41207598-41207617 Msa0641220:CDS 40.0%
! AAAATGATGGGATGAGGTAC+TGG + chr4_3:41207604-41207623 Msa0641220:CDS 40.0%
CCATCCAAATCAACATTGTG+AGG - chr4_3:41207636-41207655 None:intergenic 40.0%
!! CCTCACAATGTTGATTTGGA+TGG + chr4_3:41207633-41207652 Msa0641220:CDS 40.0%
TTACCCTCTGTTGGAGAATT+TGG + chr4_3:41207684-41207703 Msa0641220:CDS 40.0%
CTTCCAAATTCTCCAACAGA+GGG - chr4_3:41207690-41207709 None:intergenic 40.0%
GTGAGTCAAATGGTTCATCT+AGG + chr4_3:41207733-41207752 Msa0641220:CDS 40.0%
! TCAAATGGTTCATCTAGGAC+TGG + chr4_3:41207738-41207757 Msa0641220:CDS 40.0%
AATGTCACCTCCACTTCTAT+TGG + chr4_3:41207887-41207906 Msa0641220:CDS 40.0%
TTTCCCAGATACGTATAGCA+AGG + chr4_3:41207988-41208007 Msa0641220:CDS 40.0%
CAAGAGTTGCAGCAAATATC+GGG + chr4_3:41208074-41208093 Msa0641220:CDS 40.0%
! CTTTTCAAAGAGTGGCACAA+TGG - chr4_3:41208255-41208274 None:intergenic 40.0%
TTCACATCTTGGATACGCAA+AGG - chr4_3:41208491-41208510 None:intergenic 40.0%
TTGCGTATCCAAGATGTGAA+AGG + chr4_3:41208491-41208510 Msa0641220:CDS 40.0%
TTGCATAGACTGAATACAGG+GGG - chr4_3:41208588-41208607 None:intergenic 40.0%
GTTGCATAGACTGAATACAG+GGG - chr4_3:41208589-41208608 None:intergenic 40.0%
CAGTTGCATAGACTGAATAC+AGG - chr4_3:41208591-41208610 None:intergenic 40.0%
TCAGAATCTTTGCAAGTTCC+TGG + chr4_3:41208780-41208799 Msa0641220:intron 40.0%
TGCAGTAACATTTAGCCGTA+TGG + chr4_3:41209163-41209182 Msa0641220:intron 40.0%
CCATTATAAGTTTCCCCTCA+GGG - chr4_3:41209190-41209209 None:intergenic 40.0%
CCTGAGGGGAAACTTATAAT+GGG + chr4_3:41209188-41209207 Msa0641220:CDS 40.0%
CTGAGGGGAAACTTATAATG+GGG + chr4_3:41209189-41209208 Msa0641220:CDS 40.0%
! GGAAACTTATAATGGGGTTC+AGG + chr4_3:41209195-41209214 Msa0641220:CDS 40.0%
! ACTTATAATGGGGTTCAGGA+AGG + chr4_3:41209199-41209218 Msa0641220:CDS 40.0%
TTTCCGTCTAATATGCCCAA+TGG + chr4_3:41209321-41209340 Msa0641220:CDS 40.0%
GAACCATTGGGCATATTAGA+CGG - chr4_3:41209327-41209346 None:intergenic 40.0%
!!! AACCCTTTTGAGACTGAAGA+AGG - chr4_3:41209416-41209435 None:intergenic 40.0%
! ACTTTCTAGAGAGCGCATTT+AGG - chr4_3:41209452-41209471 None:intergenic 40.0%
! TAAATGCGCTCTCTAGAAAG+TGG + chr4_3:41209451-41209470 Msa0641220:CDS 40.0%
TCTAGAAAGTGGAACTCAGT+TGG + chr4_3:41209462-41209481 Msa0641220:CDS 40.0%
ATGTAGAAATGCCTGAAAGC+AGG + chr4_3:41209505-41209524 Msa0641220:CDS 40.0%
! ACATCTCTTTTCCTGCTTTC+AGG - chr4_3:41209519-41209538 None:intergenic 40.0%
ACTGGAGCTGAAACTTACTT+GGG + chr4_3:41209632-41209651 Msa0641220:CDS 40.0%
ACAACACTTGGCTTAACTTC+TGG - chr4_3:41209687-41209706 None:intergenic 40.0%
TACATGCATGCATGATAGAG+AGG + chr4_3:41209799-41209818 Msa0641220:intron 40.0%
ACATGCATGCATGATAGAGA+GGG + chr4_3:41209800-41209819 Msa0641220:intron 40.0%
ATAGAGAGGGGCGAAAATTA+TGG + chr4_3:41209813-41209832 Msa0641220:intron 40.0%
! TATCCAAAGCTTTTCAGTCC+TGG + chr4_3:41209914-41209933 Msa0641220:intron 40.0%
AAGTTAATCACTGCTACGTG+TGG - chr4_3:41210073-41210092 None:intergenic 40.0%
TTGGAGTATGATTGTACCAC+AGG + chr4_3:41210358-41210377 Msa0641220:intron 40.0%
GTGATAGTTGCCAAAAATGG+CGG + chr4_3:41210403-41210422 Msa0641220:CDS 40.0%
ATGTACTTATTCCCCCTAAG+TGG + chr4_3:41210439-41210458 Msa0641220:CDS 40.0%
! GACGTGTATGGAGAACTTTT+GGG + chr4_3:41210461-41210480 Msa0641220:CDS 40.0%
!!! AGAACTTTTGGGATCAAAGC+AGG + chr4_3:41210472-41210491 Msa0641220:CDS 40.0%
CTCCCAATGAATTGAATCCA+AGG + chr4_3:41210590-41210609 Msa0641220:CDS 40.0%
TGAATTGAATCCAAGGGAAC+TGG + chr4_3:41210597-41210616 Msa0641220:CDS 40.0%
TGATAGATTGGGGTTCCAAA+TGG + chr4_3:41210953-41210972 Msa0641220:intron 40.0%
GATAGATTGGGGTTCCAAAT+GGG + chr4_3:41210954-41210973 Msa0641220:intron 40.0%
ATTTAAGAGGGAAGCCCATT+TGG - chr4_3:41210971-41210990 None:intergenic 40.0%
ATGGGCTTCCCTCTTAAATT+TGG + chr4_3:41210972-41210991 Msa0641220:intron 40.0%
! GAGAGGCTTTTGCATTATTC+AGG - chr4_3:41211087-41211106 None:intergenic 40.0%
GAATTTGTACACCAACCGTA+CGG - chr4_3:41211160-41211179 None:intergenic 40.0%
! TATGACAAGAATGTGATGGG+TGG + chr4_3:41211388-41211407 Msa0641220:intron 40.0%
! GCAGCATAATTTGGGATCAT+GGG - chr4_3:41211518-41211537 None:intergenic 40.0%
! TGCAGCATAATTTGGGATCA+TGG - chr4_3:41211519-41211538 None:intergenic 40.0%
TTATGCTGCATGATCAAGGA+TGG + chr4_3:41211529-41211548 Msa0641220:intron 40.0%
TGATGCTTTAGCAAATGCTG+CGG + chr4_3:41211713-41211732 Msa0641220:CDS 40.0%
!!! GCATCATCAGGGTTTTAAAC+CGG - chr4_3:41211905-41211924 None:intergenic 40.0%
!! GCTTTTTCTTTCGCATCATC+AGG - chr4_3:41211917-41211936 None:intergenic 40.0%
GTCTACTTCTGATTCATCCT+TGG - chr4_3:41211994-41212013 None:intergenic 40.0%
AACTGGAGTTAAATGTCGAG+AGG - chr4_3:41212021-41212040 None:intergenic 40.0%
CGACATTTAACTCCAGTTGA+TGG + chr4_3:41212023-41212042 Msa0641220:CDS 40.0%
TTCAAGTAACCAAGACCAAG+TGG + chr4_3:41212082-41212101 Msa0641220:CDS 40.0%
GAGACATACCTGAAGCAAAA+TGG + chr4_3:41212221-41212240 Msa0641220:CDS 40.0%
ACAGTCCTGAAGAGAATAGT+GGG + chr4_3:41212372-41212391 Msa0641220:CDS 40.0%
! AGTAAAGCATCTTCTTGCCA+TGG + chr4_3:41212643-41212662 Msa0641220:three_prime_UTR 40.0%
TTTGCATTTGTGTTGCAGCG+CGG - chr4_3:41204755-41204774 None:intergenic 45.0%
TGAACTTCCCCTCAAACTTC+CGG + chr4_3:41204842-41204861 Msa0641220:five_prime_UTR 45.0%
TTGTCGTACCGGAAGTTTGA+GGG - chr4_3:41204853-41204872 None:intergenic 45.0%
ATTGTCGTACCGGAAGTTTG+AGG - chr4_3:41204854-41204873 None:intergenic 45.0%
GCCGATCTATGTGATAAGTG+CGG + chr4_3:41205067-41205086 Msa0641220:CDS 45.0%
CCCGCACTTATCACATAGAT+CGG - chr4_3:41205071-41205090 None:intergenic 45.0%
CCGATCTATGTGATAAGTGC+GGG + chr4_3:41205068-41205087 Msa0641220:CDS 45.0%
! TGCGGTTGTTGGTAAGATTG+TGG + chr4_3:41205532-41205551 Msa0641220:intron 45.0%
! TGTTGGTAAGATTGTGGCTG+CGG + chr4_3:41205538-41205557 Msa0641220:intron 45.0%
!! ACCACTAGCTCTGTTGAGTT+AGG - chr4_3:41205775-41205794 None:intergenic 45.0%
ATTGGACCCCTCAGATTAGT+CGG + chr4_3:41205907-41205926 Msa0641220:intron 45.0%
CTAAGACCGACTAATCTGAG+GGG - chr4_3:41205916-41205935 None:intergenic 45.0%
CCTAAGACCGACTAATCTGA+GGG - chr4_3:41205917-41205936 None:intergenic 45.0%
TTTCTGTGGTTACCCTAGGT+CGG + chr4_3:41206005-41206024 Msa0641220:intron 45.0%
ACCATCCGATCATGATCTGA+CGG + chr4_3:41206344-41206363 Msa0641220:intron 45.0%
CCGAGATTCCCTACAATTAC+TGG - chr4_3:41206471-41206490 None:intergenic 45.0%
TCACAAGACTCGTGGGTATA+AGG - chr4_3:41206495-41206514 None:intergenic 45.0%
AACCATGTCACAAGACTCGT+GGG - chr4_3:41206502-41206521 None:intergenic 45.0%
AAACCATGTCACAAGACTCG+TGG - chr4_3:41206503-41206522 None:intergenic 45.0%
! TGGAGAGAGTGTACTTCATG+TGG + chr4_3:41206790-41206809 Msa0641220:CDS 45.0%
AGAGTGTACTTCATGTGGCA+AGG + chr4_3:41206795-41206814 Msa0641220:CDS 45.0%
! AAGTCCTGAAGTACTTGCAC+AGG - chr4_3:41206984-41207003 None:intergenic 45.0%
ACAAGGTGAAGTGAGCTTAC+AGG - chr4_3:41207010-41207029 None:intergenic 45.0%
CGTGCTCTTCCATATATAGG+AGG + chr4_3:41207307-41207326 Msa0641220:intron 45.0%
! AATGTGAGGGGTATGCAAGT+TGG + chr4_3:41207570-41207589 Msa0641220:CDS 45.0%
! ATGTGAGGGGTATGCAAGTT+GGG + chr4_3:41207571-41207590 Msa0641220:CDS 45.0%
CCAACAGAGGGTAAAACTTC+TGG - chr4_3:41207678-41207697 None:intergenic 45.0%
! CCAGAAGTTTTACCCTCTGT+TGG + chr4_3:41207675-41207694 Msa0641220:CDS 45.0%
GCTTCCAAATTCTCCAACAG+AGG - chr4_3:41207691-41207710 None:intergenic 45.0%
ATTTGGCAAAGGAGCGGTAA+GGG - chr4_3:41207826-41207845 None:intergenic 45.0%
AAAGGGATTTGGCAAAGGAG+CGG - chr4_3:41207832-41207851 None:intergenic 45.0%
GATCTAGACGCCAATAGAAG+TGG - chr4_3:41207900-41207919 None:intergenic 45.0%
TCTAAGCCTGGAGATAGAGT+TGG - chr4_3:41207951-41207970 None:intergenic 45.0%
ACTCTATCTCCAGGCTTAGA+AGG + chr4_3:41207951-41207970 Msa0641220:CDS 45.0%
CTTAGAAGGAAACACAGGCA+TGG + chr4_3:41207965-41207984 Msa0641220:CDS 45.0%
! AGGCCTTGCTATACGTATCT+GGG - chr4_3:41207994-41208013 None:intergenic 45.0%
ATCAGTTGCTTCCGCGATAT+TGG + chr4_3:41208036-41208055 Msa0641220:CDS 45.0%
GTAATTCTGGGCCAATATCG+CGG - chr4_3:41208050-41208069 None:intergenic 45.0%
TTCAAAGAGTGGCACAATGG+TGG - chr4_3:41208252-41208271 None:intergenic 45.0%
ATGCTTAGTGCAAGTGATGC+TGG + chr4_3:41208275-41208294 Msa0641220:CDS 45.0%
CATCTTGGATACGCAAAGGA+AGG - chr4_3:41208487-41208506 None:intergenic 45.0%
CCCTGAGGGGAAACTTATAA+TGG + chr4_3:41209187-41209206 Msa0641220:CDS 45.0%
CCCATTATAAGTTTCCCCTC+AGG - chr4_3:41209191-41209210 None:intergenic 45.0%
TGGCCTTCTTCAGTCTCAAA+AGG + chr4_3:41209410-41209429 Msa0641220:CDS 45.0%
GGCCTTCTTCAGTCTCAAAA+GGG + chr4_3:41209411-41209430 Msa0641220:CDS 45.0%
! TCTAGAGAGCGCATTTAGGT+GGG - chr4_3:41209448-41209467 None:intergenic 45.0%
! TTCTAGAGAGCGCATTTAGG+TGG - chr4_3:41209449-41209468 None:intergenic 45.0%
!! GAGGTTGCTTATTGATAGCG+AGG + chr4_3:41209605-41209624 Msa0641220:CDS 45.0%
!! TATTGATAGCGAGGATGCAC+TGG + chr4_3:41209614-41209633 Msa0641220:CDS 45.0%
CACTGGAGCTGAAACTTACT+TGG + chr4_3:41209631-41209650 Msa0641220:CDS 45.0%
GCTGAAACTTACTTGGGAAG+AGG + chr4_3:41209638-41209657 Msa0641220:CDS 45.0%
ACACTTGGCTTAACTTCTGG+AGG - chr4_3:41209684-41209703 None:intergenic 45.0%
TCCTCGATCATGACAACACT+TGG - chr4_3:41209699-41209718 None:intergenic 45.0%
CATGCATGCATGATAGAGAG+GGG + chr4_3:41209801-41209820 Msa0641220:intron 45.0%
TCACCAGGACTGAAAAGCTT+TGG - chr4_3:41209920-41209939 None:intergenic 45.0%
GACATGGACTTTACCTGCAT+TGG + chr4_3:41209972-41209991 Msa0641220:intron 45.0%
! GCGTATTGATAGACCAATGC+AGG - chr4_3:41209988-41210007 None:intergenic 45.0%
ACGCATGCACTAACCAGTAT+TGG + chr4_3:41210004-41210023 Msa0641220:intron 45.0%
CTCTTCTTTCCAAACACAGG+AGG - chr4_3:41210191-41210210 None:intergenic 45.0%
! CCAAAAATGGCGGAAGTTAC+CGG + chr4_3:41210413-41210432 Msa0641220:CDS 45.0%
GGGGGAATAAGTACATCAAC+CGG - chr4_3:41210435-41210454 None:intergenic 45.0%
TCTCCATACACGTCCACTTA+GGG - chr4_3:41210455-41210474 None:intergenic 45.0%
TTCTCCATACACGTCCACTT+AGG - chr4_3:41210456-41210475 None:intergenic 45.0%
! GGACGTGTATGGAGAACTTT+TGG + chr4_3:41210460-41210479 Msa0641220:CDS 45.0%
GATCAAAGCAGGTGAGTAGA+AGG + chr4_3:41210483-41210502 Msa0641220:intron 45.0%
ACAGCATCGCATAAGCACAA+AGG - chr4_3:41210550-41210569 None:intergenic 45.0%
TCTCAGGGACACTGATAGAT+TGG + chr4_3:41210941-41210960 Msa0641220:intron 45.0%
CTCAGGGACACTGATAGATT+GGG + chr4_3:41210942-41210961 Msa0641220:intron 45.0%
TCAGGGACACTGATAGATTG+GGG + chr4_3:41210943-41210962 Msa0641220:intron 45.0%
AGGAGAATTGACAGTCCGTA+CGG + chr4_3:41211142-41211161 Msa0641220:intron 45.0%
TTAGCAAATGCTGCGGTACT+TGG + chr4_3:41211720-41211739 Msa0641220:CDS 45.0%
! TGTCTTGTTGTGGTCAACAC+TGG - chr4_3:41211774-41211793 None:intergenic 45.0%
TGGCTGGATACAGACAATAC+AGG - chr4_3:41211820-41211839 None:intergenic 45.0%
CAGACATTACACGTGCATGT+AGG - chr4_3:41211867-41211886 None:intergenic 45.0%
TCTGCATGACAGTTAAACGC+CGG + chr4_3:41211883-41211902 Msa0641220:CDS 45.0%
TCATTCTCCGAACCATCAAC+TGG - chr4_3:41212038-41212057 None:intergenic 45.0%
GTTCGGAGAATGAAGCAAGA+GGG + chr4_3:41212045-41212064 Msa0641220:CDS 45.0%
ACTTGAATTGCCAACCGGAT+CGG + chr4_3:41212129-41212148 Msa0641220:CDS 45.0%
! GTCATCATGCTCAGAGTGTT+TGG - chr4_3:41212173-41212192 None:intergenic 45.0%
TGAAGAAGCAAATCTCCCGT+TGG + chr4_3:41212199-41212218 Msa0641220:CDS 45.0%
TGCTTCAGGTATGTCTCCAA+CGG - chr4_3:41212218-41212237 None:intergenic 45.0%
ACAGACAACCAATGAGAGTG+AGG + chr4_3:41212298-41212317 Msa0641220:CDS 45.0%
CAGACAACCAATGAGAGTGA+GGG + chr4_3:41212299-41212318 Msa0641220:CDS 45.0%
TTGTCTTCCCTCACTCTCAT+TGG - chr4_3:41212309-41212328 None:intergenic 45.0%
GAGTGAGGGAAGACAAAATG+AGG + chr4_3:41212313-41212332 Msa0641220:CDS 45.0%
TGCTTCTGCAGTTCATGAAC+AGG + chr4_3:41212346-41212365 Msa0641220:CDS 45.0%
GACAGTCCTGAAGAGAATAG+TGG + chr4_3:41212371-41212390 Msa0641220:CDS 45.0%
TCTTGCCCACTATTCTCTTC+AGG - chr4_3:41212380-41212399 None:intergenic 45.0%
! TTAGGTTGTACACCAGTGTG+AGG + chr4_3:41212609-41212628 Msa0641220:three_prime_UTR 45.0%
!!! AATTTATGATTTTTTTTTTT+TGG + chr4_3:41207124-41207143 Msa0641220:intron 5.0%
!!! ATTTATGATTTTTTTTTTTT+GGG + chr4_3:41207125-41207144 Msa0641220:intron 5.0%
!! ATAAAAATAACTATAATAAT+GGG - chr4_3:41208379-41208398 None:intergenic 5.0%
!! AATAAAAATAACTATAATAA+TGG - chr4_3:41208380-41208399 None:intergenic 5.0%
CGGTTACCGGAGAGAAAAGT+GGG - chr4_3:41204689-41204708 None:intergenic 50.0%
ACGGTTACCGGAGAGAAAAG+TGG - chr4_3:41204690-41204709 None:intergenic 50.0%
CGGAGGAGAAGAAGTTAGAG+AGG - chr4_3:41204720-41204739 None:intergenic 50.0%
! TACCGTCGGCTATGGTGATA+CGG - chr4_3:41204820-41204839 None:intergenic 50.0%
! AGTTCATGTACCGTCGGCTA+TGG - chr4_3:41204828-41204847 None:intergenic 50.0%
AGGGGAAGTTCATGTACCGT+CGG - chr4_3:41204834-41204853 None:intergenic 50.0%
TGTCGTACCGGAAGTTTGAG+GGG - chr4_3:41204852-41204871 None:intergenic 50.0%
! GTGGAACCTCTACGTCGATT+CGG + chr4_3:41205008-41205027 Msa0641220:CDS 50.0%
GGGTCAAAACGACAAAACGG+TGG - chr4_3:41205428-41205447 None:intergenic 50.0%
GCCTAACTCAACAGAGCTAG+TGG + chr4_3:41205771-41205790 Msa0641220:intron 50.0%
! GTGGTGATGACGTGAGACAT+AGG + chr4_3:41205790-41205809 Msa0641220:intron 50.0%
AGCCCATCGAAATTGGCACT+GGG - chr4_3:41205849-41205868 None:intergenic 50.0%
TAGCCCATCGAAATTGGCAC+TGG - chr4_3:41205850-41205869 None:intergenic 50.0%
! CCCTCAGATTAGTCGGTCTT+AGG + chr4_3:41205914-41205933 Msa0641220:intron 50.0%
GCCTAAGACCGACTAATCTG+AGG - chr4_3:41205918-41205937 None:intergenic 50.0%
! CAGATTAGTCGGTCTTAGGC+CGG + chr4_3:41205918-41205937 Msa0641220:intron 50.0%
TGCATGCAATCAGTGACTGC+AGG - chr4_3:41206307-41206326 None:intergenic 50.0%
CATGCATTCACAGTGACTGC+AGG + chr4_3:41206321-41206340 Msa0641220:intron 50.0%
ACCGTCAGATCATGATCGGA+TGG - chr4_3:41206348-41206367 None:intergenic 50.0%
TGAACAGTCCGATCTCGATC+AGG + chr4_3:41206426-41206445 Msa0641220:intron 50.0%
! TACCCACGAGTCTTGTGACA+TGG + chr4_3:41206497-41206516 Msa0641220:intron 50.0%
TATCTGCAGCGTCTCCATTG+TGG + chr4_3:41206899-41206918 Msa0641220:intron 50.0%
TTCCCAGCAGTGCATATCTC+TGG + chr4_3:41207536-41207555 Msa0641220:CDS 50.0%
AGCCAGAGATATGCACTGCT+GGG - chr4_3:41207541-41207560 None:intergenic 50.0%
TAGCCAGAGATATGCACTGC+TGG - chr4_3:41207542-41207561 None:intergenic 50.0%
GATTTGGCAAAGGAGCGGTA+AGG - chr4_3:41207827-41207846 None:intergenic 50.0%
CTAGACGCCAATAGAAGTGG+AGG - chr4_3:41207897-41207916 None:intergenic 50.0%
! AGAGTTGGCCTAGGAGGTTT+AGG - chr4_3:41207936-41207955 None:intergenic 50.0%
CCTGTGTTTCCTTCTAAGCC+TGG - chr4_3:41207963-41207982 None:intergenic 50.0%
CCAGGCTTAGAAGGAAACAC+AGG + chr4_3:41207960-41207979 Msa0641220:CDS 50.0%
! GAGGCCTTGCTATACGTATC+TGG - chr4_3:41207995-41208014 None:intergenic 50.0%
GCAAGTGATGCTGGTCGAAT+TGG + chr4_3:41208284-41208303 Msa0641220:CDS 50.0%
!! CCTCAGGTTGAGAGATAGGA+GGG - chr4_3:41208463-41208482 None:intergenic 50.0%
CCTCCTATCTCTCAACCTGA+GGG + chr4_3:41208461-41208480 Msa0641220:CDS 50.0%
CAGTCTATGCAACTGCAAGC+TGG + chr4_3:41208596-41208615 Msa0641220:CDS 50.0%
ATTTAGCCGTATGGACCCTG+AGG + chr4_3:41209172-41209191 Msa0641220:CDS 50.0%
TTTAGCCGTATGGACCCTGA+GGG + chr4_3:41209173-41209192 Msa0641220:CDS 50.0%
!! GAACTCAGTTGGTGCTGACA+TGG + chr4_3:41209473-41209492 Msa0641220:CDS 50.0%
!! CAGTTGGTGCTGACATGGAT+TGG + chr4_3:41209478-41209497 Msa0641220:CDS 50.0%
TTCTTCTCAGGAACCAGCAC+AGG - chr4_3:41209555-41209574 None:intergenic 50.0%
ACTTACTTGGGAAGAGGCTC+AGG + chr4_3:41209644-41209663 Msa0641220:CDS 50.0%
! CTTGGCTTAACTTCTGGAGG+TGG - chr4_3:41209681-41209700 None:intergenic 50.0%
! GCCAAGTGTTGTCATGATCG+AGG + chr4_3:41209695-41209714 Msa0641220:CDS 50.0%
ATTCAGGAGCCTCCTGTGTT+TGG + chr4_3:41210179-41210198 Msa0641220:intron 50.0%
ACCACAGGATAAGTGAGCAG+TGG + chr4_3:41210373-41210392 Msa0641220:intron 50.0%
TCCACTGCTCACTTATCCTG+TGG - chr4_3:41210377-41210396 None:intergenic 50.0%
!! CCGGTAACTTCCGCCATTTT+TGG - chr4_3:41210416-41210435 None:intergenic 50.0%
TCCATACACGTCCACTTAGG+GGG - chr4_3:41210453-41210472 None:intergenic 50.0%
CTCCATACACGTCCACTTAG+GGG - chr4_3:41210454-41210473 None:intergenic 50.0%
GAATTGACAGTCCGTACGGT+TGG + chr4_3:41211146-41211165 Msa0641220:intron 50.0%
GAAGATTCACGATCCAGAGC+TGG - chr4_3:41211687-41211706 None:intergenic 50.0%
! GCTCTGGATCGTGAATCTTC+TGG + chr4_3:41211687-41211706 Msa0641220:CDS 50.0%
GGAGATGATGCAAGTGACTC+TGG + chr4_3:41211741-41211760 Msa0641220:CDS 50.0%
ATGATGCAAGTGACTCTGGC+AGG + chr4_3:41211745-41211764 Msa0641220:CDS 50.0%
!! ATGACGAGGGTGTCTTGTTG+TGG - chr4_3:41211784-41211803 None:intergenic 50.0%
CAACAAGACACCCTCGTCAT+AGG + chr4_3:41211784-41211803 Msa0641220:CDS 50.0%
TCTGTATCCAGCCACCAAGT+GGG + chr4_3:41211826-41211845 Msa0641220:CDS 50.0%
TTGTGTTTGCCCTTCCCACT+TGG - chr4_3:41211843-41211862 None:intergenic 50.0%
TCAGCAATCATGGAGGACCA+AGG + chr4_3:41211974-41211993 Msa0641220:CDS 50.0%
GGTTCGGAGAATGAAGCAAG+AGG + chr4_3:41212044-41212063 Msa0641220:CDS 50.0%
CTTGAATTGCCAACCGGATC+GGG + chr4_3:41212130-41212149 Msa0641220:CDS 50.0%
GCTTCAGGTATGTCTCCAAC+GGG - chr4_3:41212217-41212236 None:intergenic 50.0%
TTGTACACCAGTGTGAGGCA+AGG + chr4_3:41212614-41212633 Msa0641220:three_prime_UTR 50.0%
TTCAACTCCTTGCCTCACAC+TGG - chr4_3:41212624-41212643 None:intergenic 50.0%
CAGCGCGGAGAGAGTTTGAA+CGG - chr4_3:41204740-41204759 None:intergenic 55.0%
!! GAACCTCTACGTCGATTCGG+TGG + chr4_3:41205011-41205030 Msa0641220:CDS 55.0%
TCCCCCAGTGCCAATTTCGA+TGG + chr4_3:41205843-41205862 Msa0641220:intron 55.0%
! CCCATCGAAATTGGCACTGG+GGG - chr4_3:41205847-41205866 None:intergenic 55.0%
CCCCCAGTGCCAATTTCGAT+GGG + chr4_3:41205844-41205863 Msa0641220:intron 55.0%
GCCCATCGAAATTGGCACTG+GGG - chr4_3:41205848-41205867 None:intergenic 55.0%
TGGTTACCCTAGGTCGGAAC+TGG + chr4_3:41206011-41206030 Msa0641220:intron 55.0%
GGTTACCCTAGGTCGGAACT+GGG + chr4_3:41206012-41206031 Msa0641220:intron 55.0%
GAGATCCCAGTTCCGACCTA+GGG - chr4_3:41206020-41206039 None:intergenic 55.0%
CGTGACTGCCTGATCGAGAT+CGG - chr4_3:41206437-41206456 None:intergenic 55.0%
! GGAGATAGAGTTGGCCTAGG+AGG - chr4_3:41207942-41207961 None:intergenic 55.0%
! CCTGGAGATAGAGTTGGCCT+AGG - chr4_3:41207945-41207964 None:intergenic 55.0%
CCTAGGCCAACTCTATCTCC+AGG + chr4_3:41207942-41207961 Msa0641220:CDS 55.0%
CTGATTCCTTCCCCGTCCTT+CGG - chr4_3:41208021-41208040 None:intergenic 55.0%
TGCTGGTCGAATTGGTCGCT+TGG + chr4_3:41208292-41208311 Msa0641220:CDS 55.0%
CCCTCCTATCTCTCAACCTG+AGG + chr4_3:41208460-41208479 Msa0641220:CDS 55.0%
!! CCCTCAGGTTGAGAGATAGG+AGG - chr4_3:41208464-41208483 None:intergenic 55.0%
!! AGGCCCTCAGGTTGAGAGAT+AGG - chr4_3:41208467-41208486 None:intergenic 55.0%
ATACGCAAAGGAAGGCCCTC+AGG - chr4_3:41208479-41208498 None:intergenic 55.0%
CAACTGCAAGCTGGCGATAC+TGG + chr4_3:41208605-41208624 Msa0641220:CDS 55.0%
TTAGCCGTATGGACCCTGAG+GGG + chr4_3:41209174-41209193 Msa0641220:CDS 55.0%
GTTTCCCCTCAGGGTCCATA+CGG - chr4_3:41209181-41209200 None:intergenic 55.0%
TTCTCAGGAACCAGCACAGG+TGG - chr4_3:41209552-41209571 None:intergenic 55.0%
TCCCCCTAAGTGGACGTGTA+TGG + chr4_3:41210449-41210468 Msa0641220:CDS 55.0%
GCTTATGCGATGCTGTCAGC+AGG + chr4_3:41210554-41210573 Msa0641220:intron 55.0%
!! CAGACAATACAGGAGCACCC+AGG - chr4_3:41211810-41211829 None:intergenic 55.0%
GTCTGTATCCAGCCACCAAG+TGG + chr4_3:41211825-41211844 Msa0641220:CDS 55.0%
TATCCAGCCACCAAGTGGGA+AGG + chr4_3:41211830-41211849 Msa0641220:CDS 55.0%
ATCCAGCCACCAAGTGGGAA+GGG + chr4_3:41211831-41211850 Msa0641220:CDS 55.0%
TGTTTGCCCTTCCCACTTGG+TGG - chr4_3:41211840-41211859 None:intergenic 55.0%
CAGCATCAGCCACTTGGTCT+TGG - chr4_3:41212094-41212113 None:intergenic 55.0%
CAAGTGGCTGATGCTGCCAA+GGG + chr4_3:41212098-41212117 Msa0641220:CDS 55.0%
GCTTGCATGTCTTCCCGATC+CGG - chr4_3:41212146-41212165 None:intergenic 55.0%
GATCGGGAAGACATGCAAGC+TGG + chr4_3:41212146-41212165 Msa0641220:CDS 55.0%
CGCGGAGAGAGTTTGAACGG+AGG - chr4_3:41204737-41204756 None:intergenic 60.0%
! CGGACGAGTTGCGGTGGTTT+TGG - chr4_3:41204779-41204798 None:intergenic 60.0%
! TGATACGGCGGTGGTGTTGG+CGG - chr4_3:41204805-41204824 None:intergenic 60.0%
TGGTGATACGGCGGTGGTGT+TGG - chr4_3:41204808-41204827 None:intergenic 60.0%
! CGTCGGCTATGGTGATACGG+CGG - chr4_3:41204817-41204836 None:intergenic 60.0%
CGCCGTATCACCATAGCCGA+CGG + chr4_3:41204815-41204834 Msa0641220:five_prime_UTR 60.0%
!! CCTCTACGTCGATTCGGTGG+CGG + chr4_3:41205014-41205033 Msa0641220:CDS 60.0%
!! ACGTCGATTCGGTGGCGGAA+AGG + chr4_3:41205019-41205038 Msa0641220:CDS 60.0%
!! CGATTCGGTGGCGGAAAGGT+TGG + chr4_3:41205023-41205042 Msa0641220:CDS 60.0%
GGAGATCCCAGTTCCGACCT+AGG - chr4_3:41206021-41206040 None:intergenic 60.0%
ATAGCAAGGCCTCCTGCCGA+AGG + chr4_3:41208002-41208021 Msa0641220:CDS 60.0%
!! GACAAGCATCGGCAAGCCAG+AGG + chr4_3:41211661-41211680 Msa0641220:CDS 60.0%
AGACACCCTCGTCATAGGCC+TGG + chr4_3:41211789-41211808 Msa0641220:CDS 60.0%
GACACCCTCGTCATAGGCCT+GGG + chr4_3:41211790-41211809 Msa0641220:CDS 60.0%
AGCACCCAGGCCTATGACGA+GGG - chr4_3:41211797-41211816 None:intergenic 60.0%
CCTTGGCAGCATCAGCCACT+TGG - chr4_3:41212100-41212119 None:intergenic 60.0%
CCAAGTGGCTGATGCTGCCA+AGG + chr4_3:41212097-41212116 Msa0641220:CDS 60.0%
GCATGTCTTCCCGATCCGGT+TGG - chr4_3:41212142-41212161 None:intergenic 60.0%
CGGCTATGGTGATACGGCGG+TGG - chr4_3:41204814-41204833 None:intergenic 65.0%
CCGCCACCGAATCGACGTAG+AGG - chr4_3:41205017-41205036 None:intergenic 65.0%
CAAGGCCTCCTGCCGAAGGA+CGG + chr4_3:41208006-41208025 Msa0641220:CDS 65.0%
AAGGCCTCCTGCCGAAGGAC+GGG + chr4_3:41208007-41208026 Msa0641220:CDS 65.0%
TTCCTTCCCCGTCCTTCGGC+AGG - chr4_3:41208017-41208036 None:intergenic 65.0%
! CACGATCCAGAGCTGGCCTC+TGG - chr4_3:41211680-41211699 None:intergenic 65.0%
GAGCACCCAGGCCTATGACG+AGG - chr4_3:41211798-41211817 None:intergenic 65.0%
! TGCCCTTCCCACTTGGTGGC+TGG - chr4_3:41211836-41211855 None:intergenic 65.0%
!! TACGGCGGTGGTGTTGGCGG+CGG - chr4_3:41204802-41204821 None:intergenic 70.0%
AGGCCTCCTGCCGAAGGACG+GGG + chr4_3:41208008-41208027 Msa0641220:CDS 70.0%
CTTCCCCGTCCTTCGGCAGG+AGG - chr4_3:41208014-41208033 None:intergenic 70.0%
CTCCTGCCGAAGGACGGGGA+AGG + chr4_3:41208012-41208031 Msa0641220:CDS 70.0%
GGCAAGCCAGAGGCCAGCTC+TGG + chr4_3:41211671-41211690 Msa0641220:CDS 70.0%
TGGCGGCGGCGGACGAGTTG+CGG - chr4_3:41204788-41204807 None:intergenic 75.0%
! CGGCGGCGGACGAGTTGCGG+TGG - chr4_3:41204785-41204804 None:intergenic 80.0%
!!! GGCGGTGGTGTTGGCGGCGG+CGG - chr4_3:41204799-41204818 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 41204540 41212804 41204540 ID=Msa0641220;Name=Msa0641220
chr4_3 mRNA 41204540 41212804 41204540 ID=Msa0641220-mRNA-1;Parent=Msa0641220;Name=Msa0641220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=371|1|1|1|0.91|0.92|13|377|901
chr4_3 exon 41204540 41204889 41204540 ID=Msa0641220-mRNA-1:exon:9264;Parent=Msa0641220-mRNA-1
chr4_3 exon 41204956 41205089 41204956 ID=Msa0641220-mRNA-1:exon:9265;Parent=Msa0641220-mRNA-1
chr4_3 exon 41206735 41206816 41206735 ID=Msa0641220-mRNA-1:exon:9266;Parent=Msa0641220-mRNA-1
chr4_3 exon 41206908 41207009 41206908 ID=Msa0641220-mRNA-1:exon:9267;Parent=Msa0641220-mRNA-1
chr4_3 exon 41207480 41208099 41207480 ID=Msa0641220-mRNA-1:exon:9268;Parent=Msa0641220-mRNA-1
chr4_3 exon 41208241 41208337 41208241 ID=Msa0641220-mRNA-1:exon:9269;Parent=Msa0641220-mRNA-1
chr4_3 exon 41208452 41208626 41208452 ID=Msa0641220-mRNA-1:exon:9270;Parent=Msa0641220-mRNA-1
chr4_3 exon 41209168 41209244 41209168 ID=Msa0641220-mRNA-1:exon:9271;Parent=Msa0641220-mRNA-1
chr4_3 exon 41209315 41209740 41209315 ID=Msa0641220-mRNA-1:exon:9272;Parent=Msa0641220-mRNA-1
chr4_3 exon 41210185 41210234 41210185 ID=Msa0641220-mRNA-1:exon:9273;Parent=Msa0641220-mRNA-1
chr4_3 exon 41210380 41210493 41210380 ID=Msa0641220-mRNA-1:exon:9274;Parent=Msa0641220-mRNA-1
chr4_3 exon 41210576 41210643 41210576 ID=Msa0641220-mRNA-1:exon:9275;Parent=Msa0641220-mRNA-1
chr4_3 exon 41211646 41212804 41211646 ID=Msa0641220-mRNA-1:exon:9276;Parent=Msa0641220-mRNA-1
chr4_3 five_prime_UTR 41204540 41204889 41204540 ID=Msa0641220-mRNA-1:five_prime_utr;Parent=Msa0641220-mRNA-1
chr4_3 five_prime_UTR 41204956 41204976 41204956 ID=Msa0641220-mRNA-1:five_prime_utr;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41204977 41205089 41204977 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41206735 41206816 41206735 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41206908 41207009 41206908 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41207480 41208099 41207480 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41208241 41208337 41208241 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41208452 41208626 41208452 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41209168 41209244 41209168 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41209315 41209740 41209315 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41210185 41210234 41210185 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41210380 41210493 41210380 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41210576 41210643 41210576 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 CDS 41211646 41212427 41211646 ID=Msa0641220-mRNA-1:cds;Parent=Msa0641220-mRNA-1
chr4_3 three_prime_UTR 41212428 41212804 41212428 ID=Msa0641220-mRNA-1:three_prime_utr;Parent=Msa0641220-mRNA-1
Gene Sequence

>Msa0641220

ATGGAGTCAAAGTGTTGCATGAACGTTGTTTGTGGAACCTCTACGTCGATTCGGTGGCGGAAAGGTTGGATTCTTCGATCCGGTGAATTTGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGCAAACAGCTTTTTGCGATATGTTCCATGCAAAAGAATCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCTCAGCTTGAAATACTTGACACTGGTGGTGTAAGCTGTATTACCTGTGCAAGTACTTCAGGACTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAAGTAAATAATGTCAGTTCCCAGCAGTGCATATCTCTGGCTAACCAATTAAATGTGAGGGGTATGCAAGTTGGGAATTATGCAGAAAATGATGGGATGAGGTACTGGCTCAAACCTCACAATGTTGATTTGGATGGACCTTCTAGAGAAATCAAACCAGAAGTTTTACCCTCTGTTGGAGAATTTGGAAGCACTTTGATGTCACAATTTCATCGTGAGTCAAATGGTTCATCTAGGACTGGTAAAGCAGAGAATGACATGCAAGATATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTACCGCTCCTTTGCCAAATCCCTTTCATAATGTCCTTGTTGATGAAAGGGAACAAAGCAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGTCATCTTTTACCTAAACCTCCTAGGCCAACTCTATCTCCAGGCTTAGAAGGAAACACAGGCATGGTTTCCCAGATACGTATAGCAAGGCCTCCTGCCGAAGGACGGGGAAGGAATCAGTTGCTTCCGCGATATTGGCCCAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTTCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTGCGTATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAATAGCAGGATGTATGTTTTAGAAGGGGTAACCCCCTGTATTCAGTCTATGCAACTGCAAGCTGGCGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATATACCTATATTAAGTGGTTATTCTGGCCTTCTTCAGTCTCAAAAGGGTTGTTCAGAAACCCACCTAAATGCGCTCTCTAGAAAGTGGAACTCAGTTGGTGCTGACATGGATTGGCATAATGTAGAAATGCCTGAAAGCAGGAAAAGAGATGTGTTGTCTTTACCACCTGTGCTGGTTCCTGAGAAGAAAAGAACTCGAAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCGAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATCGAGGATCACTTATTTGAAGAGTATGAAGAGCCTCCTGTGTTTGGAAAGAAGAGTATATTTGTGGTACGATCTACTGGGATAAGTGAGCAGTGGACACAGTGTGATAGTTGCCAAAAATGGCGGAAGTTACCGGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAACTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAATCCAAGGGAACTGGATAATCTTTTGAGAATGAACAATGAATTCAAGAAACAAAGACAAGCATCGGCAAGCCAGAGGCCAGCTCTGGATCGTGAATCTTCTGGTCTTGATGCTTTAGCAAATGCTGCGGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCAGTGTTGACCACAACAAGACACCCTCGTCATAGGCCTGGGTGCTCCTGTATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACGTGTAATGTCTGCATGACAGTTAAACGCCGGTTTAAAACCCTGATGATGCGAAAGAAAAAGCGTCAATCTGAGCGCGAAGCTGAGATTGCTCAGAAAAATCAGCAATCATGGAGGACCAAGGATGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGAGGGCCAAATGAATTAGATTCAAGTAACCAAGACCAAGTGGCTGATGCTGCCAAGGGACAATTAGACTTGAATTGCCAACCGGATCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCGTTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGTTGTACTGCTTCTGCAGTTCATGAACAGGAAGACAGTCCTGAAGAGAATAGTGGGCAAGACAGAGACCAAAACAATTCACTTTCTTGA
Protein sequence

>Msa0641220

MESKCCMNVVCGTSTSIRWRKGWILRSGEFADLCDKCGSAYEQTAFCDMFHAKESGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCASTSGLQPIASNEKPNESGTAKVNNVSSQQCISLANQLNVRGMQVGNYAENDGMRYWLKPHNVDLDGPSREIKPEVLPSVGEFGSTLMSQFHRESNGSSRTGKAENDMQDIYESLAQTNLSMTLTAPLPNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSPGLEGNTGMVSQIRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNMPNGSHSSETSYSGVYENIPILSGYSGLLQSQKGCSETHLNALSRKWNSVGADMDWHNVEMPESRKRDVLSLPPVLVPEKKRTRNIGSKSKRLLIDSEDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSTGISEQWTQCDSCQKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNNEFKKQRQASASQRPALDRESSGLDALANAAVLGDDASDSGRTPVLTTTRHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQQSWRTKDESEVDSTSRHLTPVDGSENEARGPNELDSSNQDQVADAAKGQLDLNCQPDREDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCCTASAVHEQEDSPEENSGQDRDQNNSLS*