Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529780 | XP_003604167.1 | 95.873 | 315 | 13 | 0 | 1 | 315 | 1 | 315 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529780 | sp|Q9LU39|GLUBP_ARATH | 54.829 | 321 | 121 | 8 | 1 | 313 | 1 | 305 | 2.24e-117 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529780 | G7JVM7 | 95.873 | 315 | 13 | 0 | 1 | 315 | 1 | 315 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072600 | Msa0529780 | 0.808032 | 3.779949e-50 | -8.615850e-47 |
| Msa0139550 | Msa0529780 | 0.950809 | 7.624169e-109 | -8.615850e-47 |
| Msa0374340 | Msa0529780 | 0.825273 | 5.128395e-54 | -8.615850e-47 |
| Msa0374420 | Msa0529780 | 0.825291 | 5.079381e-54 | -8.615850e-47 |
| Msa0388080 | Msa0529780 | 0.816835 | 4.506380e-52 | -8.615850e-47 |
| Msa0403470 | Msa0529780 | 0.831156 | 1.958328e-55 | -8.615850e-47 |
| Msa0469870 | Msa0529780 | 0.805162 | 1.524956e-49 | -8.615850e-47 |
| Msa0529780 | Msa0548650 | 0.806537 | 7.838373e-50 | -8.615850e-47 |
| Msa0529780 | Msa0603690 | 0.808916 | 2.447507e-50 | -8.615850e-47 |
| Msa0529780 | Msa0968470 | 0.800493 | 1.404361e-48 | -8.615850e-47 |
| Msa0529780 | Msa1124530 | 0.822180 | 2.719353e-53 | -8.615850e-47 |
| Msa0529780 | Msa1208450 | 0.801816 | 7.533234e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529780 | MtrunA17_Chr4g0000861 | 95.873 | 315 | 13 | 0 | 1 | 315 | 1 | 315 | 0.0 | 629 |
| Msa0529780 | MtrunA17_Chr3g0077841 | 83.721 | 43 | 7 | 0 | 223 | 265 | 1 | 43 | 2.77e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529780 | AT3G21200.1 | 54.829 | 321 | 121 | 8 | 1 | 313 | 1 | 305 | 2.28e-118 | 343 |
| Msa0529780 | AT3G03890.1 | 28.295 | 258 | 153 | 12 | 53 | 292 | 75 | 318 | 9.55e-13 | 68.2 |
| Msa0529780 | AT3G03890.2 | 28.163 | 245 | 144 | 12 | 53 | 279 | 75 | 305 | 8.76e-12 | 65.1 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTTCAAGAACAATTA+TGG | 0.206636 | 4_1:-3527687 | Msa0529780:CDS |
| CCTTGCATATTTGATGAAAT+TGG | 0.214626 | 4_1:+3525201 | None:intergenic |
| TAGGGTTCATATAGTATTTC+AGG | 0.218025 | 4_1:+3524968 | None:intergenic |
| AGTAATGTCTTCCATATTAT+TGG | 0.225630 | 4_1:+3525840 | None:intergenic |
| CGATTGTTGATTGTTCTAAT+TGG | 0.226764 | 4_1:+3527738 | None:intergenic |
| TGAAGGGTGTGTTGAGATTT+TGG | 0.236408 | 4_1:+3527808 | None:intergenic |
| CTATGTTGATTTGGATTTCC+AGG | 0.294434 | 4_1:-3525803 | Msa0529780:intron |
| TGTTGAAATGAAAGGGAAAA+TGG | 0.302674 | 4_1:+3527975 | None:intergenic |
| TCACAGAAGCAAAGATGATA+TGG | 0.313832 | 4_1:-3525466 | Msa0529780:CDS |
| TGTATATTATTGCTGTAGAT+AGG | 0.315510 | 4_1:-3526124 | Msa0529780:CDS |
| GCTGCACTTGGATGACTTCC+AGG | 0.317388 | 4_1:-3526099 | Msa0529780:CDS |
| TGAAATTAACACCAATAATA+TGG | 0.323447 | 4_1:-3525851 | Msa0529780:CDS |
| TTGTAATGTCTATGTTGATT+TGG | 0.370501 | 4_1:-3525812 | Msa0529780:CDS |
| CACAGCGGCTTGTTTCTTTG+TGG | 0.379289 | 4_1:-3526184 | Msa0529780:intron |
| ACTTTCAACGTTAACCCAAC+AGG | 0.382511 | 4_1:-3527645 | Msa0529780:CDS |
| ATTTAACTGTATGTCACAAT+TGG | 0.386834 | 4_1:-3525333 | Msa0529780:CDS |
| AGAGAAGTCACAGATGAAAA+AGG | 0.391076 | 4_1:-3525368 | Msa0529780:CDS |
| TTCGTTGTTGATTCTGAAGA+TGG | 0.392454 | 4_1:-3527596 | Msa0529780:CDS |
| GATGATATGGGTAGACCGTT+TGG | 0.393043 | 4_1:-3525453 | Msa0529780:CDS |
| GATTGTTGATTGTTCTAATT+GGG | 0.406772 | 4_1:+3527739 | None:intergenic |
| ATGGGTAGACCGTTTGGGCT+TGG | 0.410130 | 4_1:-3525447 | Msa0529780:CDS |
| ATGATATGGGTAGACCGTTT+GGG | 0.419361 | 4_1:-3525452 | Msa0529780:CDS |
| TCCTAACAACGGTTTATTTG+AGG | 0.427212 | 4_1:-3525408 | Msa0529780:CDS |
| GAACAATTATGGATTTAGCT+AGG | 0.431943 | 4_1:-3527676 | Msa0529780:CDS |
| TGACAAGATATTGAACTTGT+TGG | 0.433046 | 4_1:-3524999 | Msa0529780:three_prime_UTR |
| TCTTTGTGGACGAAGAGGTT+TGG | 0.443453 | 4_1:-3526170 | Msa0529780:CDS |
| ACTGTATGTCACAATTGGCT+TGG | 0.444223 | 4_1:-3525328 | Msa0529780:CDS |
| ATTCTGTGATGATTCATTTG+AGG | 0.444580 | 4_1:-3525130 | Msa0529780:three_prime_UTR |
| CGAAATGAGATTGAATTTGA+AGG | 0.447078 | 4_1:+3527791 | None:intergenic |
| ACCCAACAGGGTTATCCTCT+TGG | 0.450020 | 4_1:-3527632 | Msa0529780:CDS |
| CTGTATGTCACAATTGGCTT+GGG | 0.450082 | 4_1:-3525327 | Msa0529780:CDS |
| AGAAAGAAACTTCCATCCTC+TGG | 0.456228 | 4_1:-3525300 | Msa0529780:CDS |
| TGTTCAGTGTTGAAATGAAA+GGG | 0.456955 | 4_1:+3527968 | None:intergenic |
| AACAATTATGGATTTAGCTA+GGG | 0.462844 | 4_1:-3527675 | Msa0529780:CDS |
| CTTGAAACTTCAGATGGAAA+CGG | 0.466933 | 4_1:+3527698 | None:intergenic |
| ACTCCTCAGTGTACACTTCA+AGG | 0.467071 | 4_1:-3527358 | Msa0529780:CDS |
| TAAATGGGCAAATCCAAAAT+CGG | 0.468532 | 4_1:-3528035 | None:intergenic |
| TGTAGATAGGGTGCTGCACT+TGG | 0.473744 | 4_1:-3526111 | Msa0529780:CDS |
| CACTTCTTTCAAATAAAGTC+AGG | 0.480140 | 4_1:+3525028 | None:intergenic |
| CAGGGTTATCCTCTTGGTGT+TGG | 0.489252 | 4_1:-3527626 | Msa0529780:CDS |
| ATTATGGATTTAGCTAGGGT+TGG | 0.490791 | 4_1:-3527671 | Msa0529780:CDS |
| ACCTCAAATAAACCGTTGTT+AGG | 0.493427 | 4_1:+3525407 | None:intergenic |
| ATTGTTCTTGAAACTTCAGA+TGG | 0.496689 | 4_1:+3527692 | None:intergenic |
| TCAGGATCCGGCTTTGATCA+AGG | 0.506394 | 4_1:-3527320 | Msa0529780:intron |
| GAAATGAGATTGAATTTGAA+GGG | 0.509653 | 4_1:+3527792 | None:intergenic |
| TTGTTCAGTGTTGAAATGAA+AGG | 0.517988 | 4_1:+3527967 | None:intergenic |
| GTATATTATTGCTGTAGATA+GGG | 0.518730 | 4_1:-3526123 | Msa0529780:CDS |
| GAAGATTGAATTGAAATTGA+AGG | 0.519184 | 4_1:+3527905 | None:intergenic |
| TTTCATCTGTGACTTCTCTA+GGG | 0.522593 | 4_1:+3525372 | None:intergenic |
| ACCAAGAGGATAACCCTGTT+GGG | 0.525860 | 4_1:+3527631 | None:intergenic |
| GTTGTTGGTGTAAAACATGA+TGG | 0.527632 | 4_1:+3527842 | None:intergenic |
| CATACAGTTAAATGTTGACT+TGG | 0.529692 | 4_1:+3525343 | None:intergenic |
| ACCTTGACATGAAGTGAAGA+GGG | 0.536966 | 4_1:+3527512 | None:intergenic |
| CATATAGTATTTCAGGCACA+AGG | 0.543248 | 4_1:+3524975 | None:intergenic |
| CACCAAGAGGATAACCCTGT+TGG | 0.548682 | 4_1:+3527630 | None:intergenic |
| CCTTCTCAAAATCCAGAGGA+TGG | 0.550636 | 4_1:+3525288 | None:intergenic |
| ATATTTGATGAAATTGGTAG+TGG | 0.551633 | 4_1:+3525207 | None:intergenic |
| CACAGAAGCAAAGATGATAT+GGG | 0.552316 | 4_1:-3525465 | Msa0529780:CDS |
| TCACTCACCTTGATCAAAGC+CGG | 0.553576 | 4_1:+3527313 | None:intergenic |
| AAAATTTCTAAAGAACTCTA+GGG | 0.557397 | 4_1:+3524950 | None:intergenic |
| AATTCTCAGCAAACTCTCGA+AGG | 0.558854 | 4_1:+3525881 | None:intergenic |
| ATTCTCAGCAAACTCTCGAA+GGG | 0.571271 | 4_1:+3525882 | None:intergenic |
| CTTTCAACGTTAACCCAACA+GGG | 0.573683 | 4_1:-3527644 | Msa0529780:CDS |
| GTGAATGTTATTATCAGTGG+TGG | 0.576165 | 4_1:+3527538 | None:intergenic |
| AGGAACGCTCACGAAACCTC+AGG | 0.583087 | 4_1:-3527338 | Msa0529780:CDS |
| AACGCATATCCAAGCCCAAA+CGG | 0.583766 | 4_1:+3525438 | None:intergenic |
| TCTGTGACTTCTCTAGGGAA+AGG | 0.588455 | 4_1:+3525377 | None:intergenic |
| TACCTTGACATGAAGTGAAG+AGG | 0.592658 | 4_1:+3527511 | None:intergenic |
| CCCCTCTTCACTTCATGTCA+AGG | 0.595937 | 4_1:-3527513 | Msa0529780:intron |
| TTGTTTCTTTGTGGACGAAG+AGG | 0.598679 | 4_1:-3526175 | Msa0529780:CDS |
| TATGTCACAATTGGCTTGGG+AGG | 0.603045 | 4_1:-3525324 | Msa0529780:CDS |
| GATTGAATTGAAATTGAAGG+TGG | 0.604584 | 4_1:+3527908 | None:intergenic |
| GCTCACGAAACCTCAGGATC+CGG | 0.604789 | 4_1:-3527332 | Msa0529780:CDS |
| TTGATCAAAGCCGGATCCTG+AGG | 0.605727 | 4_1:+3527322 | None:intergenic |
| GGTGTGAATGTTATTATCAG+TGG | 0.609297 | 4_1:+3527535 | None:intergenic |
| TTCTTTCAAATAAAGTCAGG+AGG | 0.611188 | 4_1:+3525031 | None:intergenic |
| CCAATTTCATCAAATATGCA+AGG | 0.612346 | 4_1:-3525201 | Msa0529780:three_prime_UTR |
| TTCTCAGCAAACTCTCGAAG+GGG | 0.632254 | 4_1:+3525883 | None:intergenic |
| AATCGAACACCAACACCAAG+AGG | 0.641303 | 4_1:+3527617 | None:intergenic |
| CTTCTCTAGGGAAAGGAATG+CGG | 0.641717 | 4_1:+3525384 | None:intergenic |
| TCTCAGCAAACTCTCGAAGG+GGG | 0.641945 | 4_1:+3525884 | None:intergenic |
| TGAATGTTATTATCAGTGGT+GGG | 0.656145 | 4_1:+3527539 | None:intergenic |
| GTAACCTTCTCAAAATCCAG+AGG | 0.672238 | 4_1:+3525284 | None:intergenic |
| ATATAGTATTTCAGGCACAA+GGG | 0.673526 | 4_1:+3524976 | None:intergenic |
| CTTGACATGAAGTGAAGAGG+GGG | 0.679817 | 4_1:+3527514 | None:intergenic |
| CCTTGACATGAAGTGAAGAG+GGG | 0.702259 | 4_1:+3527513 | None:intergenic |
| GCACTTGGATGACTTCCAGG+AGG | 0.736814 | 4_1:-3526096 | Msa0529780:intron |
| GTTCCTTGAAGTGTACACTG+AGG | 0.794003 | 4_1:+3527355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTGAAATAGAAAAAA+GGG | + | chr4_1:3525421-3525440 | None:intergenic | 15.0% |
| !! | TTATGATTGAAATAGAAAAA+AGG | + | chr4_1:3525422-3525441 | None:intergenic | 15.0% |
| !!! | AGTTTTTTGAATGAATTAAT+GGG | - | chr4_1:3525511-3525530 | Msa0529780:intron | 15.0% |
| !! | AACTAATGTGATATATTATA+TGG | + | chr4_1:3526301-3526320 | None:intergenic | 15.0% |
| !! | ACTAAATTAACTAATTCAAA+AGG | - | chr4_1:3526513-3526532 | Msa0529780:intron | 15.0% |
| !! | CTAAATTAACTAATTCAAAA+GGG | - | chr4_1:3526514-3526533 | Msa0529780:intron | 15.0% |
| !!! | TGATTGATGATTTTTAATTT+TGG | - | chr4_1:3526543-3526562 | Msa0529780:intron | 15.0% |
| !! | GGATAACAAATAAATAAAAA+TGG | + | chr4_1:3527262-3527281 | None:intergenic | 15.0% |
| !!! | AAATTTTATGTAGATAAATC+AGG | + | chr4_1:3527303-3527322 | None:intergenic | 15.0% |
| !! | TTATCTACATAAAATTTAAC+TGG | - | chr4_1:3527306-3527325 | Msa0529780:intron | 15.0% |
| !!! | GAGTTTTTTGAATGAATTAA+TGG | - | chr4_1:3525510-3525529 | Msa0529780:intron | 20.0% |
| !!! | TTGGTAACATTTTAGAATTT+CGG | - | chr4_1:3526073-3526092 | Msa0529780:intron | 20.0% |
| !! | TGAAATTAACACCAATAATA+TGG | - | chr4_1:3527137-3527156 | Msa0529780:intron | 20.0% |
| ! | GAAGATTGAATTGAAATTGA+AGG | + | chr4_1:3525086-3525105 | None:intergenic | 25.0% |
| ! | GAAATGAGATTGAATTTGAA+GGG | + | chr4_1:3525199-3525218 | None:intergenic | 25.0% |
| !! | GATTGTTGATTGTTCTAATT+GGG | + | chr4_1:3525252-3525271 | None:intergenic | 25.0% |
| ! | TGAAGTTTCAAGAACAATTA+TGG | - | chr4_1:3525301-3525320 | Msa0529780:CDS | 25.0% |
| ! | AACAATTATGGATTTAGCTA+GGG | - | chr4_1:3525313-3525332 | Msa0529780:CDS | 25.0% |
| ! | GAATGAATTAATGGGATAAT+TGG | - | chr4_1:3525519-3525538 | Msa0529780:intron | 25.0% |
| ! | ATTAATGGGATAATTGGAAT+TGG | - | chr4_1:3525525-3525544 | Msa0529780:intron | 25.0% |
| ! | TTAGTATAGATACATATGCA+TGG | - | chr4_1:3525754-3525773 | Msa0529780:intron | 25.0% |
| ! | AATTTAGTCCCTTAAATTGT+AGG | - | chr4_1:3525808-3525827 | Msa0529780:CDS | 25.0% |
| ! | AAACTAATGTGATCTATTGT+TGG | + | chr4_1:3525837-3525856 | None:intergenic | 25.0% |
| !! | ATTAGTTTGAATCAAGTAAG+TGG | - | chr4_1:3525849-3525868 | Msa0529780:CDS | 25.0% |
| ! | ACTAATTTGACTAACTCAAA+AGG | - | chr4_1:3526024-3526043 | Msa0529780:intron | 25.0% |
| !! | GGTCTAAAATTAAGTTCAAT+TGG | - | chr4_1:3526094-3526113 | Msa0529780:intron | 25.0% |
| ! | TGATCTCTTAAATGAACAAA+AGG | - | chr4_1:3526268-3526287 | Msa0529780:intron | 25.0% |
| !!! | TTATTTTTGTATCAACCATC+CGG | + | chr4_1:3526460-3526479 | None:intergenic | 25.0% |
| ! | TTAATTACCGAGAATTTCTA+GGG | - | chr4_1:3526584-3526603 | Msa0529780:intron | 25.0% |
| ! | TGTATATTATTGCTGTAGAT+AGG | - | chr4_1:3526864-3526883 | Msa0529780:intron | 25.0% |
| ! | GTATATTATTGCTGTAGATA+GGG | - | chr4_1:3526865-3526884 | Msa0529780:intron | 25.0% |
| ! | TTGCTGATACTAATTGTAAT+AGG | - | chr4_1:3526969-3526988 | Msa0529780:intron | 25.0% |
| ! | AGTAATGTCTTCCATATTAT+TGG | + | chr4_1:3527151-3527170 | None:intergenic | 25.0% |
| !! | TTGTAATGTCTATGTTGATT+TGG | - | chr4_1:3527176-3527195 | Msa0529780:intron | 25.0% |
| !! | TTGTTATCCTTTGATTTAAC+TGG | - | chr4_1:3527273-3527292 | Msa0529780:intron | 25.0% |
| ! | CTAACTTCAAAACAATATTG+AGG | - | chr4_1:3527442-3527461 | Msa0529780:intron | 25.0% |
| ! | ATTTAACTGTATGTCACAAT+TGG | - | chr4_1:3527655-3527674 | Msa0529780:CDS | 25.0% |
| ! | ATATTTGATGAAATTGGTAG+TGG | + | chr4_1:3527784-3527803 | None:intergenic | 25.0% |
| !!! | CAAGAATATGACCATTTTTA+TGG | - | chr4_1:3527828-3527847 | Msa0529780:CDS | 25.0% |
| ! | GAATACAAACACCATAAAAA+TGG | + | chr4_1:3527842-3527861 | None:intergenic | 25.0% |
| TGTTGAAATGAAAGGGAAAA+TGG | + | chr4_1:3525016-3525035 | None:intergenic | 30.0% | |
| ! | TGTTCAGTGTTGAAATGAAA+GGG | + | chr4_1:3525023-3525042 | None:intergenic | 30.0% |
| ! | TTGTTCAGTGTTGAAATGAA+AGG | + | chr4_1:3525024-3525043 | None:intergenic | 30.0% |
| !!! | GTTGTGTTTTTTGTTCTTGT+TGG | + | chr4_1:3525061-3525080 | None:intergenic | 30.0% |
| GATTGAATTGAAATTGAAGG+TGG | + | chr4_1:3525083-3525102 | None:intergenic | 30.0% | |
| CGAAATGAGATTGAATTTGA+AGG | + | chr4_1:3525200-3525219 | None:intergenic | 30.0% | |
| ! | CGATTGTTGATTGTTCTAAT+TGG | + | chr4_1:3525253-3525272 | None:intergenic | 30.0% |
| ATTGTTCTTGAAACTTCAGA+TGG | + | chr4_1:3525299-3525318 | None:intergenic | 30.0% | |
| GAACAATTATGGATTTAGCT+AGG | - | chr4_1:3525312-3525331 | Msa0529780:CDS | 30.0% | |
| TGAATGTTATTATCAGTGGT+GGG | + | chr4_1:3525452-3525471 | None:intergenic | 30.0% | |
| GGATAATTGGAATTGGAATT+GGG | - | chr4_1:3525532-3525551 | Msa0529780:intron | 30.0% | |
| TTTGAATCAAGTAAGTGGTT+TGG | - | chr4_1:3525854-3525873 | Msa0529780:CDS | 30.0% | |
| AGTACCTGAATTTGATTCTT+GGG | - | chr4_1:3525919-3525938 | Msa0529780:CDS | 30.0% | |
| ! | ATTTTCAGAACCCATTTTCT+TGG | - | chr4_1:3525990-3526009 | Msa0529780:intron | 30.0% |
| ! | TGATTGAGGATTTTCAATGT+TGG | - | chr4_1:3526054-3526073 | Msa0529780:intron | 30.0% |
| TAAGTTCAATTGGACAATGT+TGG | - | chr4_1:3526104-3526123 | Msa0529780:CDS | 30.0% | |
| TAAACCGTTAGTATTAGTGA+AGG | - | chr4_1:3526166-3526185 | Msa0529780:CDS | 30.0% | |
| TGTACCTTCACTAATACTAA+CGG | + | chr4_1:3526173-3526192 | None:intergenic | 30.0% | |
| TCACAGTTTGAAAAAACCTT+AGG | + | chr4_1:3526198-3526217 | None:intergenic | 30.0% | |
| TGGTTAATGAGTTTCAGTTA+AGG | - | chr4_1:3526344-3526363 | Msa0529780:intron | 30.0% | |
| GTTAATTACCGAGAATTTCT+AGG | - | chr4_1:3526583-3526602 | Msa0529780:intron | 30.0% | |
| AACTTATCCCTAGAAATTCT+CGG | + | chr4_1:3526594-3526613 | None:intergenic | 30.0% | |
| AAAGTGATTGATGTTGACAA+AGG | - | chr4_1:3526665-3526684 | Msa0529780:intron | 30.0% | |
| GCTATATGAAACTACAATCA+AGG | + | chr4_1:3526726-3526745 | None:intergenic | 30.0% | |
| !! | AGTCGTTTTGTTGTATAAGT+TGG | - | chr4_1:3527015-3527034 | Msa0529780:intron | 30.0% |
| ! | AGCATTTTTGTAGTCTAAAG+AGG | + | chr4_1:3527076-3527095 | None:intergenic | 30.0% |
| AAATGCTGTGTAGATAAATC+AGG | + | chr4_1:3527336-3527355 | None:intergenic | 30.0% | |
| ACACAGCAAAACTAACTTAT+CGG | + | chr4_1:3527469-3527488 | None:intergenic | 30.0% | |
| ! | TGTATTTGATTTCCCATTGT+AGG | - | chr4_1:3527499-3527518 | Msa0529780:intron | 30.0% |
| ! | CATACAGTTAAATGTTGACT+TGG | + | chr4_1:3527648-3527667 | None:intergenic | 30.0% |
| CCTTGCATATTTGATGAAAT+TGG | + | chr4_1:3527790-3527809 | None:intergenic | 30.0% | |
| CCAATTTCATCAAATATGCA+AGG | - | chr4_1:3527787-3527806 | Msa0529780:CDS | 30.0% | |
| ATTCTGTGATGATTCATTTG+AGG | - | chr4_1:3527858-3527877 | Msa0529780:CDS | 30.0% | |
| !! | TTGTTTTGCAAGGCAATTTT+TGG | - | chr4_1:3527912-3527931 | Msa0529780:five_prime_UTR | 30.0% |
| TTCTTTCAAATAAAGTCAGG+AGG | + | chr4_1:3527960-3527979 | None:intergenic | 30.0% | |
| CACTTCTTTCAAATAAAGTC+AGG | + | chr4_1:3527963-3527982 | None:intergenic | 30.0% | |
| TGACAAGATATTGAACTTGT+TGG | - | chr4_1:3527989-3528008 | Msa0529780:five_prime_UTR | 30.0% | |
| ATATAGTATTTCAGGCACAA+GGG | + | chr4_1:3528015-3528034 | None:intergenic | 30.0% | |
| TAGGGTTCATATAGTATTTC+AGG | + | chr4_1:3528023-3528042 | None:intergenic | 30.0% | |
| ! | CAATGTGTCTTTTCCGATTT+TGG | + | chr4_1:3524969-3524988 | None:intergenic | 35.0% |
| GTTGTTGGTGTAAAACATGA+TGG | + | chr4_1:3525149-3525168 | None:intergenic | 35.0% | |
| !!! | TTGGTGTTTGGTTTTGTTGT+TGG | + | chr4_1:3525164-3525183 | None:intergenic | 35.0% |
| !!! | TGTGTTGAGATTTTGGTGTT+TGG | + | chr4_1:3525176-3525195 | None:intergenic | 35.0% |
| CTTGAAACTTCAGATGGAAA+CGG | + | chr4_1:3525293-3525312 | None:intergenic | 35.0% | |
| ATTATGGATTTAGCTAGGGT+TGG | - | chr4_1:3525317-3525336 | Msa0529780:CDS | 35.0% | |
| !! | TTCGTTGTTGATTCTGAAGA+TGG | - | chr4_1:3525392-3525411 | Msa0529780:CDS | 35.0% |
| GTGAATGTTATTATCAGTGG+TGG | + | chr4_1:3525453-3525472 | None:intergenic | 35.0% | |
| GGTGTGAATGTTATTATCAG+TGG | + | chr4_1:3525456-3525475 | None:intergenic | 35.0% | |
| GGGATAATTGGAATTGGAAT+TGG | - | chr4_1:3525531-3525550 | Msa0529780:intron | 35.0% | |
| GAGTACCTGAATTTGATTCT+TGG | - | chr4_1:3525918-3525937 | Msa0529780:CDS | 35.0% | |
| TCTACCCAAGAATCAAATTC+AGG | + | chr4_1:3525926-3525945 | None:intergenic | 35.0% | |
| TTCTTGGGTAGAACAATTTG+TGG | - | chr4_1:3525934-3525953 | Msa0529780:CDS | 35.0% | |
| TCTGCATTGTCCAAGAAAAT+GGG | + | chr4_1:3526003-3526022 | None:intergenic | 35.0% | |
| CAAAAGGACTAATGTGATTG+AGG | - | chr4_1:3526040-3526059 | Msa0529780:intron | 35.0% | |
| ! | TTAGTGAAGGTACATACCTA+AGG | - | chr4_1:3526179-3526198 | Msa0529780:CDS | 35.0% |
| AGTTTAGTTGCTGAAATCGT+AGG | - | chr4_1:3526233-3526252 | Msa0529780:intron | 35.0% | |
| AACAATCTTTGGCCAAACTT+TGG | - | chr4_1:3526406-3526425 | Msa0529780:intron | 35.0% | |
| ! | GAGAATTTCTAGGGATAAGT+TGG | - | chr4_1:3526593-3526612 | Msa0529780:intron | 35.0% |
| AAACTACAATCAAGGTCACA+AGG | + | chr4_1:3526718-3526737 | None:intergenic | 35.0% | |
| ATACAACAAAACGACTTGCA+AGG | + | chr4_1:3527011-3527030 | None:intergenic | 35.0% | |
| !!! | TATGTCCTTGTTTTTCAGGA+CGG | - | chr4_1:3527039-3527058 | Msa0529780:intron | 35.0% |
| !! | CTATGTTGATTTGGATTTCC+AGG | - | chr4_1:3527185-3527204 | Msa0529780:intron | 35.0% |
| TCACAGAAGCAAAGATGATA+TGG | - | chr4_1:3527522-3527541 | Msa0529780:CDS | 35.0% | |
| CACAGAAGCAAAGATGATAT+GGG | - | chr4_1:3527523-3527542 | Msa0529780:CDS | 35.0% | |
| !! | CGTTTGTTTTCTCCTAACAA+CGG | - | chr4_1:3527569-3527588 | Msa0529780:CDS | 35.0% |
| TCCTAACAACGGTTTATTTG+AGG | - | chr4_1:3527580-3527599 | Msa0529780:CDS | 35.0% | |
| ACCTCAAATAAACCGTTGTT+AGG | + | chr4_1:3527584-3527603 | None:intergenic | 35.0% | |
| TTTCATCTGTGACTTCTCTA+GGG | + | chr4_1:3527619-3527638 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTGACTTCTCT+AGG | + | chr4_1:3527620-3527639 | None:intergenic | 35.0% |
| AGAGAAGTCACAGATGAAAA+AGG | - | chr4_1:3527620-3527639 | Msa0529780:CDS | 35.0% | |
| !!! | AAGACTGATCTTGTTTTGCA+AGG | - | chr4_1:3527902-3527921 | Msa0529780:five_prime_UTR | 35.0% |
| CATATAGTATTTCAGGCACA+AGG | + | chr4_1:3528016-3528035 | None:intergenic | 35.0% | |
| !! | TGAAGGGTGTGTTGAGATTT+TGG | + | chr4_1:3525183-3525202 | None:intergenic | 40.0% |
| ACTTTCAACGTTAACCCAAC+AGG | - | chr4_1:3525343-3525362 | Msa0529780:CDS | 40.0% | |
| CTTTCAACGTTAACCCAACA+GGG | - | chr4_1:3525344-3525363 | Msa0529780:CDS | 40.0% | |
| ACCTTGACATGAAGTGAAGA+GGG | + | chr4_1:3525479-3525498 | None:intergenic | 40.0% | |
| TACCTTGACATGAAGTGAAG+AGG | + | chr4_1:3525480-3525499 | None:intergenic | 40.0% | |
| ! | GTCAATCAGTTTTTGCAGTC+TGG | - | chr4_1:3525600-3525619 | Msa0529780:intron | 40.0% |
| ! | AGTTTTTGCAGTCTGGATTG+AGG | - | chr4_1:3525607-3525626 | Msa0529780:intron | 40.0% |
| GTTGGACGCCTACAATTTAA+GGG | + | chr4_1:3525819-3525838 | None:intergenic | 40.0% | |
| TGTTGGACGCCTACAATTTA+AGG | + | chr4_1:3525820-3525839 | None:intergenic | 40.0% | |
| ! | AGTAAGTGGTTTGGCTTAAG+TGG | - | chr4_1:3525863-3525882 | Msa0529780:CDS | 40.0% |
| GTCGAGAGGCAAGTAAAAAT+TGG | + | chr4_1:3525960-3525979 | None:intergenic | 40.0% | |
| CTCTGCATTGTCCAAGAAAA+TGG | + | chr4_1:3526004-3526023 | None:intergenic | 40.0% | |
| AACAAGAAGCTCAACTCAAG+TGG | - | chr4_1:3526324-3526343 | Msa0529780:intron | 40.0% | |
| ! | GCCAAAGATTGTTCTAGCTA+GGG | + | chr4_1:3526399-3526418 | None:intergenic | 40.0% |
| AACATTGCATTAGTTCGTCC+TGG | - | chr4_1:3526478-3526497 | Msa0529780:intron | 40.0% | |
| ACATTGCATTAGTTCGTCCT+GGG | - | chr4_1:3526479-3526498 | Msa0529780:intron | 40.0% | |
| TTTAGTCTCTACAATTGCCC+AGG | + | chr4_1:3526499-3526518 | None:intergenic | 40.0% | |
| GTGATTGATGTTGACAAAGG+TGG | - | chr4_1:3526668-3526687 | Msa0529780:intron | 40.0% | |
| CAATCAAGGTCACAAGGTAA+GGG | + | chr4_1:3526712-3526731 | None:intergenic | 40.0% | |
| ACAATCAAGGTCACAAGGTA+AGG | + | chr4_1:3526713-3526732 | None:intergenic | 40.0% | |
| ! | TTGTTTCTTTGTGGACGAAG+AGG | - | chr4_1:3526813-3526832 | Msa0529780:intron | 40.0% |
| !!! | TGGCTATGTCCTTGTTTTTC+AGG | - | chr4_1:3527035-3527054 | Msa0529780:intron | 40.0% |
| ATTCTCAGCAAACTCTCGAA+GGG | + | chr4_1:3527109-3527128 | None:intergenic | 40.0% | |
| AATTCTCAGCAAACTCTCGA+AGG | + | chr4_1:3527110-3527129 | None:intergenic | 40.0% | |
| !! | ATACATGCAGGAAAAGTACC+TGG | + | chr4_1:3527206-3527225 | None:intergenic | 40.0% |
| CATGCTATGTAGATACATGC+AGG | + | chr4_1:3527218-3527237 | None:intergenic | 40.0% | |
| AGGTGCACCAGTTAAATCAA+AGG | + | chr4_1:3527283-3527302 | None:intergenic | 40.0% | |
| TGCATAAATACAGTCACAGC+AGG | + | chr4_1:3527375-3527394 | None:intergenic | 40.0% | |
| TTGCTTCTGTGACCTACAAT+GGG | + | chr4_1:3527514-3527533 | None:intergenic | 40.0% | |
| TTTGCTTCTGTGACCTACAA+TGG | + | chr4_1:3527515-3527534 | None:intergenic | 40.0% | |
| ATGATATGGGTAGACCGTTT+GGG | - | chr4_1:3527536-3527555 | Msa0529780:CDS | 40.0% | |
| ACTGTATGTCACAATTGGCT+TGG | - | chr4_1:3527660-3527679 | Msa0529780:CDS | 40.0% | |
| ! | CTGTATGTCACAATTGGCTT+GGG | - | chr4_1:3527661-3527680 | Msa0529780:CDS | 40.0% |
| AGAAAGAAACTTCCATCCTC+TGG | - | chr4_1:3527688-3527707 | Msa0529780:CDS | 40.0% | |
| GTAACCTTCTCAAAATCCAG+AGG | + | chr4_1:3527707-3527726 | None:intergenic | 40.0% | |
| ! | GTTTTTGTCTAGTCTGTTGC+AGG | - | chr4_1:3527934-3527953 | Msa0529780:five_prime_UTR | 40.0% |
| ACCAAGAGGATAACCCTGTT+GGG | + | chr4_1:3525360-3525379 | None:intergenic | 45.0% | |
| AATCGAACACCAACACCAAG+AGG | + | chr4_1:3525374-3525393 | None:intergenic | 45.0% | |
| CTTGACATGAAGTGAAGAGG+GGG | + | chr4_1:3525477-3525496 | None:intergenic | 45.0% | |
| CCTTGACATGAAGTGAAGAG+GGG | + | chr4_1:3525478-3525497 | None:intergenic | 45.0% | |
| ACTCCTCAGTGTACACTTCA+AGG | - | chr4_1:3525630-3525649 | Msa0529780:intron | 45.0% | |
| GTTCCTTGAAGTGTACACTG+AGG | + | chr4_1:3525636-3525655 | None:intergenic | 45.0% | |
| TCACTCACCTTGATCAAAGC+CGG | + | chr4_1:3525678-3525697 | None:intergenic | 45.0% | |
| CTTTGATCAAGGTGAGTGAG+TGG | - | chr4_1:3525679-3525698 | Msa0529780:intron | 45.0% | |
| AAATCCAGAGTTGAGTCGAG+AGG | + | chr4_1:3525974-3525993 | None:intergenic | 45.0% | |
| GCCCTAGCTAGAACAATCTT+TGG | - | chr4_1:3526395-3526414 | Msa0529780:intron | 45.0% | |
| ! | GGCCAAAGATTGTTCTAGCT+AGG | + | chr4_1:3526400-3526419 | None:intergenic | 45.0% |
| TCCGGTTTCCAGAGGAAAAA+GGG | + | chr4_1:3526442-3526461 | None:intergenic | 45.0% | |
| ATCCGGTTTCCAGAGGAAAA+AGG | + | chr4_1:3526443-3526462 | None:intergenic | 45.0% | |
| !! | TTTTTCCTCTGGAAACCGGA+TGG | - | chr4_1:3526442-3526461 | Msa0529780:intron | 45.0% |
| ACAGAACACACAAGCGTAGA+TGG | + | chr4_1:3526758-3526777 | None:intergenic | 45.0% | |
| TTTCTATTGCCACTCCACAG+CGG | - | chr4_1:3526789-3526808 | Msa0529780:intron | 45.0% | |
| TCTTTGTGGACGAAGAGGTT+TGG | - | chr4_1:3526818-3526837 | Msa0529780:intron | 45.0% | |
| ACACACCGTCCTGAAAAACA+AGG | + | chr4_1:3527047-3527066 | None:intergenic | 45.0% | |
| !!! | TTGTTTTTCAGGACGGTGTG+TGG | - | chr4_1:3527046-3527065 | Msa0529780:intron | 45.0% |
| TTCTCAGCAAACTCTCGAAG+GGG | + | chr4_1:3527108-3527127 | None:intergenic | 45.0% | |
| GATGATATGGGTAGACCGTT+TGG | - | chr4_1:3527535-3527554 | Msa0529780:CDS | 45.0% | |
| AACGCATATCCAAGCCCAAA+CGG | + | chr4_1:3527553-3527572 | None:intergenic | 45.0% | |
| ! | CTTCTCTAGGGAAAGGAATG+CGG | + | chr4_1:3527607-3527626 | None:intergenic | 45.0% |
| ! | TCTGTGACTTCTCTAGGGAA+AGG | + | chr4_1:3527614-3527633 | None:intergenic | 45.0% |
| !! | TATGTCACAATTGGCTTGGG+AGG | - | chr4_1:3527664-3527683 | Msa0529780:CDS | 45.0% |
| CCTTCTCAAAATCCAGAGGA+TGG | + | chr4_1:3527703-3527722 | None:intergenic | 45.0% | |
| !! | CCATCCTCTGGATTTTGAGA+AGG | - | chr4_1:3527700-3527719 | Msa0529780:CDS | 45.0% |
| !! | TATAATTTAATAAAAATGAA+GGG | + | chr4_1:3526929-3526948 | None:intergenic | 5.0% |
| !! | ATATAATTTAATAAAAATGA+AGG | + | chr4_1:3526930-3526949 | None:intergenic | 5.0% |
| ACCCAACAGGGTTATCCTCT+TGG | - | chr4_1:3525356-3525375 | Msa0529780:CDS | 50.0% | |
| CACCAAGAGGATAACCCTGT+TGG | + | chr4_1:3525361-3525380 | None:intergenic | 50.0% | |
| ! | CAGGGTTATCCTCTTGGTGT+TGG | - | chr4_1:3525362-3525381 | Msa0529780:CDS | 50.0% |
| CCCCTCTTCACTTCATGTCA+AGG | - | chr4_1:3525475-3525494 | Msa0529780:intron | 50.0% | |
| TTGATCAAAGCCGGATCCTG+AGG | + | chr4_1:3525669-3525688 | None:intergenic | 50.0% | |
| ! | TCAGGATCCGGCTTTGATCA+AGG | - | chr4_1:3525668-3525687 | Msa0529780:intron | 50.0% |
| ! | TTCTAGCTAGGGCTCGAACT+CGG | + | chr4_1:3526388-3526407 | None:intergenic | 50.0% |
| ! | GGCTCTGGTAGTCCAAAGTT+TGG | + | chr4_1:3526421-3526440 | None:intergenic | 50.0% |
| ! | TACCAGAGCCCTTTTTCCTC+TGG | - | chr4_1:3526431-3526450 | Msa0529780:intron | 50.0% |
| TTCCAGAGGAAAAAGGGCTC+TGG | + | chr4_1:3526436-3526455 | None:intergenic | 50.0% | |
| !! | GCCCTTTTTCCTCTGGAAAC+CGG | - | chr4_1:3526438-3526457 | Msa0529780:intron | 50.0% |
| ATCAACCATCCGGTTTCCAG+AGG | + | chr4_1:3526450-3526469 | None:intergenic | 50.0% | |
| CACAAAGAAACAAGCCGCTG+TGG | + | chr4_1:3526806-3526825 | None:intergenic | 50.0% | |
| ! | CACAGCGGCTTGTTTCTTTG+TGG | - | chr4_1:3526804-3526823 | Msa0529780:intron | 50.0% |
| !! | TGTAGATAGGGTGCTGCACT+TGG | - | chr4_1:3526877-3526896 | Msa0529780:intron | 50.0% |
| TTGGATGACTTCCAGGAGGT+AGG | - | chr4_1:3526896-3526915 | Msa0529780:intron | 50.0% | |
| TGGATGACTTCCAGGAGGTA+GGG | - | chr4_1:3526897-3526916 | Msa0529780:intron | 50.0% | |
| TCTCAGCAAACTCTCGAAGG+GGG | + | chr4_1:3527107-3527126 | None:intergenic | 50.0% | |
| AGGAACGCTCACGAAACCTC+AGG | - | chr4_1:3525650-3525669 | Msa0529780:intron | 55.0% | |
| GCTCACGAAACCTCAGGATC+CGG | - | chr4_1:3525656-3525675 | Msa0529780:intron | 55.0% | |
| CTTGCCTCTCGACTCAACTC+TGG | - | chr4_1:3525967-3525986 | Msa0529780:intron | 55.0% | |
| TCTAGCTAGGGCTCGAACTC+GGG | + | chr4_1:3526387-3526406 | None:intergenic | 55.0% | |
| AGAAACAAGCCGCTGTGGAG+TGG | + | chr4_1:3526801-3526820 | None:intergenic | 55.0% | |
| GCTGCACTTGGATGACTTCC+AGG | - | chr4_1:3526889-3526908 | Msa0529780:intron | 55.0% | |
| GCACTTGGATGACTTCCAGG+AGG | - | chr4_1:3526892-3526911 | Msa0529780:intron | 55.0% | |
| ATGGGTAGACCGTTTGGGCT+TGG | - | chr4_1:3527541-3527560 | Msa0529780:CDS | 55.0% | |
| AGGGTCAAGTCCCTACCTCC+TGG | + | chr4_1:3526910-3526929 | None:intergenic | 60.0% | |
| GCAAACTCTCGAAGGGGGTC+AGG | + | chr4_1:3527102-3527121 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3524959 | 3528051 | 3524959 | ID=Msa0529780;Name=Msa0529780 |
| chr4_1 | mRNA | 3524959 | 3528051 | 3524959 | ID=Msa0529780-mRNA-1;Parent=Msa0529780;Name=Msa0529780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=157|1|1|1|1|1|5|300|315 |
| chr4_1 | exon | 3524959 | 3525489 | 3524959 | ID=Msa0529780-mRNA-1:exon:1046;Parent=Msa0529780-mRNA-1 |
| chr4_1 | exon | 3525804 | 3525953 | 3525804 | ID=Msa0529780-mRNA-1:exon:1045;Parent=Msa0529780-mRNA-1 |
| chr4_1 | exon | 3526097 | 3526201 | 3526097 | ID=Msa0529780-mRNA-1:exon:1044;Parent=Msa0529780-mRNA-1 |
| chr4_1 | exon | 3527321 | 3527401 | 3527321 | ID=Msa0529780-mRNA-1:exon:1043;Parent=Msa0529780-mRNA-1 |
| chr4_1 | exon | 3527514 | 3528051 | 3527514 | ID=Msa0529780-mRNA-1:exon:1042;Parent=Msa0529780-mRNA-1 |
| chr4_1 | five_prime_UTR | 3527895 | 3528051 | 3527895 | ID=Msa0529780-mRNA-1:five_prime_utr;Parent=Msa0529780-mRNA-1 |
| chr4_1 | CDS | 3527514 | 3527894 | 3527514 | ID=Msa0529780-mRNA-1:cds;Parent=Msa0529780-mRNA-1 |
| chr4_1 | CDS | 3527321 | 3527401 | 3527321 | ID=Msa0529780-mRNA-1:cds;Parent=Msa0529780-mRNA-1 |
| chr4_1 | CDS | 3526097 | 3526201 | 3526097 | ID=Msa0529780-mRNA-1:cds;Parent=Msa0529780-mRNA-1 |
| chr4_1 | CDS | 3525804 | 3525953 | 3525804 | ID=Msa0529780-mRNA-1:cds;Parent=Msa0529780-mRNA-1 |
| chr4_1 | CDS | 3525259 | 3525489 | 3525259 | ID=Msa0529780-mRNA-1:cds;Parent=Msa0529780-mRNA-1 |
| chr4_1 | three_prime_UTR | 3524959 | 3525258 | 3524959 | ID=Msa0529780-mRNA-1:three_prime_utr;Parent=Msa0529780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
