AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469870 MtrunA17_Chr3g0124871 98.063 413 8 0 1 413 1 413 0.0 833
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469870 AT1G69740.1 77.315 432 74 3 3 413 2 430 0.0 646
Msa0469870 AT1G69740.3 77.315 432 74 3 3 413 2 430 0.0 646
Msa0469870 AT1G69740.2 77.315 432 74 3 3 413 2 430 0.0 646
Msa0469870 AT1G44318.1 70.455 352 95 2 62 413 59 401 0.0 513

Find 133 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAGCATCTGGAATTT+TGG 0.073758 3_3:+71894498 None:intergenic
CTTTGAGCTCTCTGGCCTTC+TGG 0.109394 3_3:+71891398 None:intergenic
ATCATTCAGTTTCACCTTAT+TGG 0.128665 3_3:-71896028 Msa0469870:five_prime_UTR
CTTTATTCACAACAGGTTTC+TGG 0.142989 3_3:-71891612 Msa0469870:intron
GAAGCCTGGGCTTCCTTATT+TGG 0.157019 3_3:-71892400 Msa0469870:CDS
TACACATCGATCCGCGTTTC+AGG 0.190551 3_3:-71895503 Msa0469870:CDS
GAGTCCAATGCTTCCCTAAA+TGG 0.193544 3_3:+71892729 None:intergenic
TTACACCATTTGTAAGATAA+TGG 0.240086 3_3:+71891284 None:intergenic
GTGAGATTCTTCAAACATTT+AGG 0.248335 3_3:-71891433 Msa0469870:exon
AACGTTGGTGTGTGAATTTA+AGG 0.252371 3_3:+71895866 None:intergenic
TCATGCCCATCTGAAGAATA+TGG 0.266166 3_3:+71894193 None:intergenic
TTTGAGCTCTCTGGCCTTCT+GGG 0.294963 3_3:+71891399 None:intergenic
TTTAAGGTTAAGGGTGTGTT+TGG 0.329848 3_3:+71895882 None:intergenic
TACACCATTTGTAAGATAAT+GGG 0.335377 3_3:+71891285 None:intergenic
CGACGAGGACGCCTCTGAAT+TGG 0.335567 3_3:+71895541 None:intergenic
AAGAAGATAAGTTATTATTA+AGG 0.335812 3_3:+71896053 None:intergenic
TGGTGAGTACTCGATGATTA+AGG 0.335831 3_3:-71891592 Msa0469870:CDS
CAAAATTCCAGATGCTTTGA+AGG 0.350403 3_3:-71894497 Msa0469870:intron
GTGTGTGAATTTAAGGTTAA+GGG 0.356716 3_3:+71895873 None:intergenic
AGCCTTATGATATCCAAATA+AGG 0.360550 3_3:+71892387 None:intergenic
AAAGCCTCTCTGTAGTTTGC+CGG 0.370396 3_3:+71892566 None:intergenic
TTCCTTATTTGGATATCATA+AGG 0.373814 3_3:-71892389 Msa0469870:CDS
AATCTAGATAACAACCAATA+AGG 0.382103 3_3:+71896014 None:intergenic
CTGTGTTCACTTACAAGATC+AGG 0.387731 3_3:+71894322 None:intergenic
GAAGAGAAAAGGAACGTTGC+TGG 0.392659 3_3:-71896270 Msa0469870:five_prime_UTR
AATAGAACCTTCAAAGCATC+TGG 0.395086 3_3:+71894490 None:intergenic
GAAATTGAATAAAATTTGTC+TGG 0.395890 3_3:-71896110 Msa0469870:five_prime_UTR
TGTCAGCACCGGCACGTCTA+AGG 0.398953 3_3:+71891511 None:intergenic
TCTATATGACAGAAGGCTAA+TGG 0.402425 3_3:+71891145 None:intergenic
GTCAAATGCTTTGAGCTCTC+TGG 0.403806 3_3:+71891390 None:intergenic
CTTGTAGAGCAAAATATGTT+AGG 0.407581 3_3:+71891484 None:intergenic
CATCCGGGCATAGCACCAAT+TGG 0.415152 3_3:+71895146 None:intergenic
AATCTCCGATTACGATCATA+TGG 0.417432 3_3:-71895922 Msa0469870:exon
GGCGGTACAGGAGGCGCATC+CGG 0.419126 3_3:+71895714 None:intergenic
TCTCTTGTGCGTTTCACGTT+CGG 0.423040 3_3:+71896291 None:intergenic
AGTCCAATGCTTCCCTAAAT+GGG 0.431083 3_3:+71892730 None:intergenic
AGAAGGAGCTGATATTCTAT+TGG 0.434691 3_3:-71892519 Msa0469870:intron
TTAGCCTTCTGTCATATAGA+AGG 0.436080 3_3:-71891142 Msa0469870:three_prime_UTR
TAGTTCTTCAATGGTAGTGC+TGG 0.437216 3_3:+71895834 None:intergenic
AGAAGCCATATGATCGTAAT+CGG 0.438905 3_3:+71895917 None:intergenic
ATCCGGGCATAGCACCAATT+GGG 0.443550 3_3:+71895147 None:intergenic
AGTGGATAAACAAAATTAGT+AGG 0.445540 3_3:+71895466 None:intergenic
TTCGAAGCCGCTGTTGTCGC+TGG 0.446142 3_3:-71895744 Msa0469870:CDS
ACAGCCGGTGTAGGCGGTAC+AGG 0.451100 3_3:+71895702 None:intergenic
TCAACCCATTATCTTACAAA+TGG 0.451285 3_3:-71891289 Msa0469870:three_prime_UTR
CCAACCAAGCCTGTAGCATC+CGG 0.454753 3_3:+71895130 None:intergenic
CCTACACCGGCTGTACCTGC+TGG 0.460226 3_3:-71895693 Msa0469870:CDS
TAAAATGATTGATGAAGAAA+AGG 0.462660 3_3:-71891556 Msa0469870:CDS
TGGCCCATTTAGGGAAGCAT+TGG 0.464040 3_3:-71892733 Msa0469870:CDS
TCGAACTATACGATTACTTA+AGG 0.469401 3_3:-71894353 Msa0469870:CDS
AGAACCTGGTATGCTGCAAT+TGG 0.471730 3_3:+71892342 None:intergenic
TTGCATGTGCAGGTGAAGCC+TGG 0.473131 3_3:-71892414 Msa0469870:intron
TTGTATGCCTCATCTCCTGT+GGG 0.474392 3_3:+71894394 None:intergenic
GGTGAGGAGGACACCCCAAT+TGG 0.474774 3_3:-71895161 Msa0469870:CDS
GTGCTATGCCCGGATGCTAC+AGG 0.477134 3_3:-71895139 Msa0469870:CDS
ACCCCAATTGGTGCTATGCC+CGG 0.482806 3_3:-71895149 Msa0469870:CDS
TAGTTGGTGAAGGGTAGAAA+TGG 0.483889 3_3:-71896132 Msa0469870:five_prime_UTR
GACCACATCTGCTCCAGCAC+GGG 0.485822 3_3:+71893489 None:intergenic
TTCTAGTTATTCTGCTGTTG+AGG 0.493613 3_3:+71891223 None:intergenic
GGTGTGTGAATTTAAGGTTA+AGG 0.494498 3_3:+71895872 None:intergenic
AAGCCTCTCTGTAGTTTGCC+GGG 0.500631 3_3:+71892567 None:intergenic
AAGCTCAAATAGTTCTTCAA+TGG 0.500921 3_3:+71895825 None:intergenic
TGATGAAGAAAAGGTGATGA+TGG 0.507074 3_3:-71891547 Msa0469870:CDS
CGACCATCCATCATATCGCT+GGG 0.509074 3_3:+71893463 None:intergenic
GACGGCATTGTTAGAGAAGA+TGG 0.510196 3_3:-71894172 Msa0469870:intron
CATGCCCATCTGAAGAATAT+GGG 0.510541 3_3:+71894194 None:intergenic
GGCGTTCCAGCAGGTACAGC+CGG 0.510837 3_3:+71895687 None:intergenic
AGAAAAGAAGCAGTTATAGT+TGG 0.513239 3_3:-71896148 Msa0469870:five_prime_UTR
ACGACCATCCATCATATCGC+TGG 0.517199 3_3:+71893462 None:intergenic
TTAAGTAATCGTATAGTTCG+AGG 0.519833 3_3:+71894355 None:intergenic
AACGCACAAGAGAAGAGAAA+AGG 0.521680 3_3:-71896281 Msa0469870:five_prime_UTR
GAAGCAGTTATAGTTGGTGA+AGG 0.522012 3_3:-71896142 Msa0469870:five_prime_UTR
GAACAAGTACGCACGGGACA+TGG 0.523078 3_3:+71896077 None:intergenic
CGAGCAGCTCTCGATGCTGA+AGG 0.524524 3_3:-71893427 Msa0469870:CDS
TAATTCAGGTTGCAAAAGCA+CGG 0.525795 3_3:-71894552 Msa0469870:intron
GCTGCCAATTGCAGCATACC+AGG 0.526983 3_3:-71892346 Msa0469870:intron
GGCCCGTGCTGGAGCAGATG+TGG 0.528623 3_3:-71893491 Msa0469870:CDS
GTCACCACTGGCGTTCCAGC+AGG 0.529221 3_3:+71895678 None:intergenic
CTCGATGATTAAGGCTGGTG+GGG 0.530917 3_3:-71891583 Msa0469870:CDS
TGACCACATCTGCTCCAGCA+CGG 0.535344 3_3:+71893488 None:intergenic
AATAAGGTGAAACTGAATGA+TGG 0.538907 3_3:+71896030 None:intergenic
GTTGCAAAAGCACGGGATGT+TGG 0.543180 3_3:-71894544 Msa0469870:CDS
GGTCAGCCCCAGCGATATGA+TGG 0.544470 3_3:-71893470 Msa0469870:CDS
TACAGGCTTGGTTGGAGACA+CGG 0.544880 3_3:-71895122 Msa0469870:CDS
TACTCGATGATTAAGGCTGG+TGG 0.549281 3_3:-71891585 Msa0469870:CDS
TTAGACCCATATTCTTCAGA+TGG 0.549974 3_3:-71894199 Msa0469870:CDS
ATTGTATGCCTCATCTCCTG+TGG 0.553141 3_3:+71894393 None:intergenic
GATGAGGCATACAATGAGAA+TGG 0.554516 3_3:-71894385 Msa0469870:CDS
ATGCCCGGATGCTACAGGCT+TGG 0.560235 3_3:-71895134 Msa0469870:CDS
TGCATGTGCAGGTGAAGCCT+GGG 0.561269 3_3:-71892413 Msa0469870:intron
ATATCCAAATAAGGAAGCCC+AGG 0.561431 3_3:+71892396 None:intergenic
GAGAGGCTTTGACTGAAATG+AGG 0.562495 3_3:-71892553 Msa0469870:CDS
CCAGCAGGTACAGCCGGTGT+AGG 0.563870 3_3:+71895693 None:intergenic
TAGACCCATATTCTTCAGAT+GGG 0.565926 3_3:-71894198 Msa0469870:CDS
AAGCAGTTATAGTTGGTGAA+GGG 0.566815 3_3:-71896141 Msa0469870:five_prime_UTR
ACTCGATGATTAAGGCTGGT+GGG 0.569222 3_3:-71891584 Msa0469870:CDS
CCGGATGCTACAGGCTTGGT+TGG 0.571140 3_3:-71895130 Msa0469870:CDS
CAACCAAGCCTGTAGCATCC+GGG 0.572018 3_3:+71895131 None:intergenic
TGGTATGCTGCAATTGGCAG+CGG 0.572258 3_3:+71892348 None:intergenic
TTGTAAACAAGCTGTAGCCC+AGG 0.575741 3_3:-71893687 Msa0469870:intron
TGTTGTCGCTGGTAATGTGC+CGG 0.576305 3_3:-71895733 Msa0469870:CDS
AATTCAGGTTGCAAAAGCAC+GGG 0.578637 3_3:-71894551 Msa0469870:intron
TTACTGTGCCTTAGACGTGC+CGG 0.589296 3_3:-71891519 Msa0469870:CDS
GTATGCCTCATCTCCTGTGG+GGG 0.598288 3_3:+71894396 None:intergenic
TTAGCCTTCTATATGACAGA+AGG 0.598289 3_3:+71891138 None:intergenic
AGAGGCTTTGACTGAAATGA+GGG 0.601731 3_3:-71892552 Msa0469870:CDS
GCAGGTACAGCCGGTGTAGG+CGG 0.602153 3_3:+71895696 None:intergenic
TATTCTTCAGATGGGCATGA+CGG 0.608908 3_3:-71894190 Msa0469870:CDS
GAGACACGGACTGTTGCAAG+AGG 0.609699 3_3:-71895108 Msa0469870:intron
TGCTGGTTTAAGATCAACGT+TGG 0.610444 3_3:+71895851 None:intergenic
TGTTAGGATGATGTCAGCAC+CGG 0.612290 3_3:+71891500 None:intergenic
TGTGTTCACTTACAAGATCA+GGG 0.616355 3_3:+71894323 None:intergenic
AGCCCCAGCGATATGATGGA+TGG 0.618898 3_3:-71893466 Msa0469870:CDS
ATGAGGGAAGATGAATCAGA+AGG 0.619265 3_3:-71892536 Msa0469870:CDS
GAGTACTCGATGATTAAGGC+TGG 0.624101 3_3:-71891588 Msa0469870:CDS
TTAAGGTGAACAAGTACGCA+CGG 0.624642 3_3:+71896070 None:intergenic
TGTACCTGCTGGAACGCCAG+TGG 0.630725 3_3:-71895682 Msa0469870:CDS
TCCGGGCATAGCACCAATTG+GGG 0.638719 3_3:+71895148 None:intergenic
CTCACAAGTGAAGTCACCAC+TGG 0.642836 3_3:+71895666 None:intergenic
TGTATGCCTCATCTCCTGTG+GGG 0.643917 3_3:+71894395 None:intergenic
CAAAAGCTATCAGATGAACC+CGG 0.644138 3_3:-71892585 Msa0469870:intron
CACATTACCAGCGACAACAG+CGG 0.644957 3_3:+71895737 None:intergenic
GCCTCCTGTACCGCCTACAC+CGG 0.648035 3_3:-71895706 Msa0469870:CDS
GCTCAAAGCATTTGACAGTG+TGG 0.658784 3_3:-71891383 Msa0469870:three_prime_UTR
TAAGGTGAACAAGTACGCAC+GGG 0.662308 3_3:+71896071 None:intergenic
GATATGATGGATGGTCGTGT+TGG 0.663532 3_3:-71893457 Msa0469870:CDS
TGGTGTAATTTAATCAACTG+CGG 0.675934 3_3:-71891269 Msa0469870:three_prime_UTR
TAAAGTTGTTTCCTGAAACG+CGG 0.676695 3_3:+71895492 None:intergenic
GCCGGTGTAGGCGGTACAGG+AGG 0.678875 3_3:+71895705 None:intergenic
CGTAATCGGAGATTGAAGCG+TGG 0.722953 3_3:+71895931 None:intergenic
GACCATCCATCATATCGCTG+GGG 0.723541 3_3:+71893464 None:intergenic
GAACCCGGCAAACTACAGAG+AGG 0.774109 3_3:-71892570 Msa0469870:CDS
GCTGATCTTCTATTACGACG+AGG 0.800899 3_3:+71895526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAGATAAGTTATTATTA+AGG + chr3_3:71891384-71891403 None:intergenic 15.0%
!! TTTAGAAGATAAAAAAGAAA+AGG + chr3_3:71892787-71892806 None:intergenic 15.0%
!! TAAACTAAAATTCAATACTA+AGG + chr3_3:71892844-71892863 None:intergenic 15.0%
!! TATATTCTACCAAAAATTTA+TGG + chr3_3:71892985-71893004 None:intergenic 15.0%
!!! TAATCTAAACATTTTACATT+TGG - chr3_3:71893403-71893422 Msa0469870:CDS 15.0%
!!! TTGTGTTTTTATTTTATGAA+AGG - chr3_3:71893922-71893941 Msa0469870:intron 15.0%
!! AAATAAGTTTAGTAAAAAGA+AGG - chr3_3:71894168-71894187 Msa0469870:intron 15.0%
!!! AATTTCTATTTTTGTAGAAT+TGG + chr3_3:71894557-71894576 None:intergenic 15.0%
!!! TAAAAAAACGATTTTAACTC+TGG - chr3_3:71891202-71891221 Msa0469870:three_prime_UTR 20.0%
!!! ATAAAATTATTTTACCGCTT+TGG + chr3_3:71891249-71891268 None:intergenic 20.0%
!! GAAATTGAATAAAATTTGTC+TGG - chr3_3:71891324-71891343 Msa0469870:three_prime_UTR 20.0%
!!! TGTTTTTTTTTTTACAGCAA+TGG + chr3_3:71892542-71892561 None:intergenic 20.0%
!!! AGATTATGCAGATATTTTTT+TGG - chr3_3:71892573-71892592 Msa0469870:CDS 20.0%
!!! AAAAGGTTTTATGTTTGTTT+GGG + chr3_3:71892770-71892789 None:intergenic 20.0%
!!! TTGAGAATGTTATATTTTTC+TGG - chr3_3:71893144-71893163 Msa0469870:intron 20.0%
!!! TTTTCCAGGAATAATATTAA+AGG + chr3_3:71893510-71893529 None:intergenic 20.0%
!!! TCTTTTTTAATTTCTTTTCC+AGG + chr3_3:71893524-71893543 None:intergenic 20.0%
!! GAAATTAAAAAAGAAATCGT+CGG - chr3_3:71893530-71893549 Msa0469870:intron 20.0%
!! AAATTAAAAAAGAAATCGTC+GGG - chr3_3:71893531-71893550 Msa0469870:intron 20.0%
!!! TTATATTTTTATATCGAGCT+GGG - chr3_3:71895157-71895176 Msa0469870:CDS 20.0%
!! TAAAATGATTGATGAAGAAA+AGG - chr3_3:71895878-71895897 Msa0469870:CDS 20.0%
!!! TTAATAAAGTCAACTTTTTG+CGG - chr3_3:71896252-71896271 Msa0469870:five_prime_UTR 20.0%
! AATCTAGATAACAACCAATA+AGG + chr3_3:71891423-71891442 None:intergenic 25.0%
!!! TGATTTTTTTGTGTGTGTTT+TGG - chr3_3:71891859-71891878 Msa0469870:intron 25.0%
! AGTGGATAAACAAAATTAGT+AGG + chr3_3:71891971-71891990 None:intergenic 25.0%
!!! TATCCACTTTTTATACATGA+AGG - chr3_3:71891983-71892002 Msa0469870:intron 25.0%
! TAACCTTCATGTATAAAAAG+TGG + chr3_3:71891989-71892008 None:intergenic 25.0%
! AAATTTAGCTGAGAAAATGT+TGG - chr3_3:71892434-71892453 Msa0469870:intron 25.0%
!!! AATTCAATACCACTTTTGAA+TGG + chr3_3:71892505-71892524 None:intergenic 25.0%
!! ATTCAAAAGTGGTATTGAAT+TGG - chr3_3:71892504-71892523 Msa0469870:intron 25.0%
!! TTCAAAAGTGGTATTGAATT+GGG - chr3_3:71892505-71892524 Msa0469870:intron 25.0%
!! AATTTTATTCTTTACCGATC+TGG - chr3_3:71892599-71892618 Msa0469870:intron 25.0%
!! AGAGTTTGGATAGATTTTAT+TGG - chr3_3:71892626-71892645 Msa0469870:intron 25.0%
!! GAGTTTGGATAGATTTTATT+GGG - chr3_3:71892627-71892646 Msa0469870:intron 25.0%
!!! GAAAAGGTTTTATGTTTGTT+TGG + chr3_3:71892771-71892790 None:intergenic 25.0%
!!! AAAAAGATTTTGACGACAAA+AGG + chr3_3:71893304-71893323 None:intergenic 25.0%
! ATCATGTTCTGTAACAAAAT+AGG + chr3_3:71893333-71893352 None:intergenic 25.0%
!! AACATTTTACATTTGGATGA+TGG - chr3_3:71893410-71893429 Msa0469870:CDS 25.0%
! TGTACCTTTAATATTATTCC+TGG - chr3_3:71893503-71893522 Msa0469870:intron 25.0%
! ATGATTTGAACTATTCTTGA+AGG - chr3_3:71893617-71893636 Msa0469870:intron 25.0%
!! TTATTGACTACAATCAAGAA+AGG + chr3_3:71893656-71893675 None:intergenic 25.0%
! GTATATCCTTAATATCTTGT+AGG - chr3_3:71893691-71893710 Msa0469870:CDS 25.0%
! ATAACTCCTACAAGATATTA+AGG + chr3_3:71893700-71893719 None:intergenic 25.0%
! AAGATGTAGTTATATTACCT+GGG + chr3_3:71893767-71893786 None:intergenic 25.0%
! AAAGATGTAGTTATATTACC+TGG + chr3_3:71893768-71893787 None:intergenic 25.0%
!!! AAGTTACCATTATTTTGTTC+AGG - chr3_3:71893810-71893829 Msa0469870:intron 25.0%
!!! AGTTACCATTATTTTGTTCA+GGG - chr3_3:71893811-71893830 Msa0469870:intron 25.0%
! ACTAAATTATGTTAGTGTCT+TGG + chr3_3:71893902-71893921 None:intergenic 25.0%
!!! TAAACTTATTTCTAAAGCTC+AGG + chr3_3:71894159-71894178 None:intergenic 25.0%
!!! GGCATTTTTTTTTATTGATC+TGG - chr3_3:71894230-71894249 Msa0469870:intron 25.0%
! AGAAATTATGACTAACAAGA+TGG - chr3_3:71894570-71894589 Msa0469870:intron 25.0%
!! TATCATGCATATTTTCTTGT+CGG - chr3_3:71894614-71894633 Msa0469870:intron 25.0%
!! TTCTAAATTATGCCGTTTAT+TGG - chr3_3:71894650-71894669 Msa0469870:intron 25.0%
! TTATGTATACGATCATAGTT+AGG - chr3_3:71894952-71894971 Msa0469870:intron 25.0%
!! TTCCTTATTTGGATATCATA+AGG - chr3_3:71895045-71895064 Msa0469870:intron 25.0%
!!! CTTATATTTTTATATCGAGC+TGG - chr3_3:71895156-71895175 Msa0469870:CDS 25.0%
!!! TATATTTTTATATCGAGCTG+GGG - chr3_3:71895158-71895177 Msa0469870:CDS 25.0%
!!! TAACCATTTTTGGAAAGAAT+CGG + chr3_3:71895257-71895276 None:intergenic 25.0%
! TCTTTCCAAAAATGGTTAAT+CGG - chr3_3:71895259-71895278 Msa0469870:intron 25.0%
!! CGCTTTATTGTAATAAACTT+TGG - chr3_3:71895495-71895514 Msa0469870:CDS 25.0%
! AGATAAGATACAAAAACAGT+TGG - chr3_3:71895622-71895641 Msa0469870:intron 25.0%
! GTTGTTCATCATAGATATTA+TGG - chr3_3:71895678-71895697 Msa0469870:CDS 25.0%
! ATTGACTGCTTTAATCTTAA+GGG + chr3_3:71895727-71895746 None:intergenic 25.0%
! AATTGACTGCTTTAATCTTA+AGG + chr3_3:71895728-71895747 None:intergenic 25.0%
!! TGACAAAAACAACACATTTT+GGG + chr3_3:71896128-71896147 None:intergenic 25.0%
!! TTGACAAAAACAACACATTT+TGG + chr3_3:71896129-71896148 None:intergenic 25.0%
! TACACCATTTGTAAGATAAT+GGG + chr3_3:71896152-71896171 None:intergenic 25.0%
! TTACACCATTTGTAAGATAA+TGG + chr3_3:71896153-71896172 None:intergenic 25.0%
!! AAATTATTTTACCGCTTTGG+TGG + chr3_3:71891246-71891265 None:intergenic 30.0%
AGAAAAGAAGCAGTTATAGT+TGG - chr3_3:71891286-71891305 Msa0469870:three_prime_UTR 30.0%
AATAAGGTGAAACTGAATGA+TGG + chr3_3:71891407-71891426 None:intergenic 30.0%
ATCATTCAGTTTCACCTTAT+TGG - chr3_3:71891406-71891425 Msa0469870:three_prime_UTR 30.0%
! GTGTGTGAATTTAAGGTTAA+GGG + chr3_3:71891564-71891583 None:intergenic 30.0%
AAGCTCAAATAGTTCTTCAA+TGG + chr3_3:71891612-71891631 None:intergenic 30.0%
!! ATACATGAAGGTTAGTCTTA+AGG - chr3_3:71891995-71892014 Msa0469870:intron 30.0%
AAACTCTTGTGAAACTGTTT+CGG - chr3_3:71892057-71892076 Msa0469870:intron 30.0%
!! TACATACATTGTTAGCTTGT+AGG - chr3_3:71892192-71892211 Msa0469870:intron 30.0%
! AATATTTGAACCCTTTTTGC+AGG - chr3_3:71892252-71892271 Msa0469870:intron 30.0%
! TGTTGCAAGAGGTTTTTATA+TGG - chr3_3:71892337-71892356 Msa0469870:intron 30.0%
ATGACATTACCATTCAAAAG+TGG - chr3_3:71892493-71892512 Msa0469870:intron 30.0%
! TCAAAAGTGGTATTGAATTG+GGG - chr3_3:71892506-71892525 Msa0469870:intron 30.0%
TGTAATGAGAAGTTCAACAT+TGG + chr3_3:71892663-71892682 None:intergenic 30.0%
!! TTCAAAGCATCTGGAATTTT+GGG + chr3_3:71892938-71892957 None:intergenic 30.0%
! TCACACTTGCCATAAATTTT+TGG - chr3_3:71892973-71892992 Msa0469870:intron 30.0%
TTAAGTAATCGTATAGTTCG+AGG + chr3_3:71893082-71893101 None:intergenic 30.0%
TCGAACTATACGATTACTTA+AGG - chr3_3:71893081-71893100 Msa0469870:intron 30.0%
CAGAACATGATTCATTTCAT+TGG - chr3_3:71893342-71893361 Msa0469870:intron 30.0%
AGAATCCCTGAACAAAATAA+TGG + chr3_3:71893819-71893838 None:intergenic 30.0%
AAGTATAGCAAGAAAAACCT+TGG + chr3_3:71893868-71893887 None:intergenic 30.0%
GCAAAAACAGAAAGTAAGAT+CGG + chr3_3:71894098-71894117 None:intergenic 30.0%
AAATCGACAATTGCTAATGA+TGG - chr3_3:71894208-71894227 Msa0469870:CDS 30.0%
AATCGACAATTGCTAATGAT+GGG - chr3_3:71894209-71894228 Msa0469870:CDS 30.0%
CTTACAAGTTTGTGTTAAGA+AGG - chr3_3:71894259-71894278 Msa0469870:intron 30.0%
TATCGATGGCTATCTATTAT+AGG - chr3_3:71894294-71894313 Msa0469870:intron 30.0%
TCTATTATAGGTTGTAGCAT+TGG - chr3_3:71894306-71894325 Msa0469870:intron 30.0%
CTATTATAGGTTGTAGCATT+GGG - chr3_3:71894307-71894326 Msa0469870:intron 30.0%
GTGAAGATATTCAAAATGTG+TGG - chr3_3:71894335-71894354 Msa0469870:intron 30.0%
TTATGACTAACAAGATGGAT+TGG - chr3_3:71894575-71894594 Msa0469870:intron 30.0%
! TTCATTTTATGGCCCATTTA+GGG - chr3_3:71894692-71894711 Msa0469870:intron 30.0%
! ACGTCTTTTTATCTCCAAAA+CGG + chr3_3:71894737-71894756 None:intergenic 30.0%
TATTTACGTTGCCATATACT+TGG - chr3_3:71894816-71894835 Msa0469870:intron 30.0%
TATACGATCATAGTTAGGAA+TGG - chr3_3:71894957-71894976 Msa0469870:intron 30.0%
TTTAGAAAATTTGCATGTGC+AGG - chr3_3:71895010-71895029 Msa0469870:intron 30.0%
! AGCCTTATGATATCCAAATA+AGG + chr3_3:71895050-71895069 None:intergenic 30.0%
TTTATGCCAAGAACTAGAAT+GGG + chr3_3:71895125-71895144 None:intergenic 30.0%
AATCCGATTCTTTCCAAAAA+TGG - chr3_3:71895251-71895270 Msa0469870:intron 30.0%
CTTTCCAAAAATGGTTAATC+GGG - chr3_3:71895260-71895279 Msa0469870:intron 30.0%
! AATTCCCGATTAACCATTTT+TGG + chr3_3:71895267-71895286 None:intergenic 30.0%
TCATCATTCACATAAAACCA+AGG + chr3_3:71895759-71895778 None:intergenic 30.0%
AGAAACCTGTTGTGAATAAA+GGG + chr3_3:71895823-71895842 None:intergenic 30.0%
CTTGTAGAGCAAAATATGTT+AGG + chr3_3:71895953-71895972 None:intergenic 30.0%
! GATTTTTGTGTGGAGAAAAA+AGG - chr3_3:71895979-71895998 Msa0469870:five_prime_UTR 30.0%
GTGAGATTCTTCAAACATTT+AGG - chr3_3:71896001-71896020 Msa0469870:five_prime_UTR 30.0%
! GACAAAAACAACACATTTTG+GGG + chr3_3:71896127-71896146 None:intergenic 30.0%
TCAACCCATTATCTTACAAA+TGG - chr3_3:71896145-71896164 Msa0469870:five_prime_UTR 30.0%
TGGTGTAATTTAATCAACTG+CGG - chr3_3:71896165-71896184 Msa0469870:five_prime_UTR 30.0%
!! AAGCAGTTATAGTTGGTGAA+GGG - chr3_3:71891293-71891312 Msa0469870:three_prime_UTR 35.0%
AATCTCCGATTACGATCATA+TGG - chr3_3:71891512-71891531 Msa0469870:CDS 35.0%
AGAAGCCATATGATCGTAAT+CGG + chr3_3:71891520-71891539 None:intergenic 35.0%
! TTTAAGGTTAAGGGTGTGTT+TGG + chr3_3:71891555-71891574 None:intergenic 35.0%
! GGTGTGTGAATTTAAGGTTA+AGG + chr3_3:71891565-71891584 None:intergenic 35.0%
AACGTTGGTGTGTGAATTTA+AGG + chr3_3:71891571-71891590 None:intergenic 35.0%
!! TTTTGTTTCAGCCAATTCAG+AGG - chr3_3:71891882-71891901 Msa0469870:intron 35.0%
! TAAAGTTGTTTCCTGAAACG+CGG + chr3_3:71891945-71891964 None:intergenic 35.0%
!! GTTAGTCTTAAGGACATGTT+TGG - chr3_3:71892005-71892024 Msa0469870:intron 35.0%
! CTTTTTCTGTAGAGCTTTTG+TGG - chr3_3:71892157-71892176 Msa0469870:intron 35.0%
! TTGGACTTTGAAAATGTAGC+AGG - chr3_3:71892453-71892472 Msa0469870:intron 35.0%
!! ACATTGCTTGATTGTTTCTG+AGG - chr3_3:71892680-71892699 Msa0469870:intron 35.0%
! CAGTGAGCATTTTGTAATTC+AGG - chr3_3:71892868-71892887 Msa0469870:intron 35.0%
!! TAATTCAGGTTGCAAAAGCA+CGG - chr3_3:71892882-71892901 Msa0469870:intron 35.0%
!! TCAAAGCATCTGGAATTTTG+GGG + chr3_3:71892937-71892956 None:intergenic 35.0%
!! CTTCAAAGCATCTGGAATTT+TGG + chr3_3:71892939-71892958 None:intergenic 35.0%
CAAAATTCCAGATGCTTTGA+AGG - chr3_3:71892937-71892956 Msa0469870:intron 35.0%
! AATAGAACCTTCAAAGCATC+TGG + chr3_3:71892947-71892966 None:intergenic 35.0%
TGTGTTCACTTACAAGATCA+GGG + chr3_3:71893114-71893133 None:intergenic 35.0%
CAACAGTTGAACAAGGATAT+TGG + chr3_3:71893189-71893208 None:intergenic 35.0%
TTAGACCCATATTCTTCAGA+TGG - chr3_3:71893235-71893254 Msa0469870:intron 35.0%
TAGACCCATATTCTTCAGAT+GGG - chr3_3:71893236-71893255 Msa0469870:intron 35.0%
AATCGTCGGGAATTAAATTG+TGG - chr3_3:71893544-71893563 Msa0469870:intron 35.0%
TTACCAACACAAGTTCATAC+AGG + chr3_3:71893582-71893601 None:intergenic 35.0%
GTTCAAATCATGCAAATCCT+AGG + chr3_3:71893608-71893627 None:intergenic 35.0%
TGAACTATTCTTGAAGGAAG+TGG - chr3_3:71893623-71893642 Msa0469870:intron 35.0%
TCATGTGTACATCTTCAACT+AGG - chr3_3:71893787-71893806 Msa0469870:intron 35.0%
GAAAAACCTTGGAACATAGA+AGG + chr3_3:71893857-71893876 None:intergenic 35.0%
ATTATGTTAGTGTCTTGGTG+CGG + chr3_3:71893897-71893916 None:intergenic 35.0%
AGCAAAGTAATTTGATCGCT+TGG - chr3_3:71894060-71894079 Msa0469870:intron 35.0%
AGTAAGATCGGAAAAGGAAA+TGG + chr3_3:71894086-71894105 None:intergenic 35.0%
ACAGAAAGTAAGATCGGAAA+AGG + chr3_3:71894092-71894111 None:intergenic 35.0%
CAATAATTTCCAATGCATGC+AGG + chr3_3:71894120-71894139 None:intergenic 35.0%
AATTTGAACGCTACGGTTAT+TGG + chr3_3:71894452-71894471 None:intergenic 35.0%
CTAAAGGAATTTGAACGCTA+CGG + chr3_3:71894459-71894478 None:intergenic 35.0%
CAAATATAGTGAGATGCTCA+TGG + chr3_3:71894497-71894516 None:intergenic 35.0%
!! ATTGTCACTGATTTGCTCAT+TGG - chr3_3:71894527-71894546 Msa0469870:CDS 35.0%
! GTTCATTTTATGGCCCATTT+AGG - chr3_3:71894691-71894710 Msa0469870:intron 35.0%
! TCTTTTTATCTCCAAAACGG+GGG + chr3_3:71894734-71894753 None:intergenic 35.0%
! GTCTTTTTATCTCCAAAACG+GGG + chr3_3:71894735-71894754 None:intergenic 35.0%
! CGTCTTTTTATCTCCAAAAC+GGG + chr3_3:71894736-71894755 None:intergenic 35.0%
AGAAGGAGCTGATATTCTAT+TGG - chr3_3:71894915-71894934 Msa0469870:intron 35.0%
GTTTATGCCAAGAACTAGAA+TGG + chr3_3:71895126-71895145 None:intergenic 35.0%
TCATGTGAATCTTCCAGTTT+GGG - chr3_3:71895317-71895336 Msa0469870:intron 35.0%
CTGCTTTAATCTTAAGGGTA+GGG + chr3_3:71895722-71895741 None:intergenic 35.0%
ACTGCTTTAATCTTAAGGGT+AGG + chr3_3:71895723-71895742 None:intergenic 35.0%
CAGTCAATTAGAGAAAACCT+TGG - chr3_3:71895739-71895758 Msa0469870:CDS 35.0%
AAACCTGTTGTGAATAAAGG+GGG + chr3_3:71895821-71895840 None:intergenic 35.0%
GAAACCTGTTGTGAATAAAG+GGG + chr3_3:71895822-71895841 None:intergenic 35.0%
CAGAAACCTGTTGTGAATAA+AGG + chr3_3:71895824-71895843 None:intergenic 35.0%
CTTTATTCACAACAGGTTTC+TGG - chr3_3:71895822-71895841 Msa0469870:CDS 35.0%
TGATGAAGAAAAGGTGATGA+TGG - chr3_3:71895887-71895906 Msa0469870:CDS 35.0%
! TTCTAGTTATTCTGCTGTTG+AGG + chr3_3:71896214-71896233 None:intergenic 35.0%
TCTATATGACAGAAGGCTAA+TGG + chr3_3:71896292-71896311 None:intergenic 35.0%
! TTAGCCTTCTGTCATATAGA+AGG - chr3_3:71896292-71896311 Msa0469870:five_prime_UTR 35.0%
AACGCACAAGAGAAGAGAAA+AGG - chr3_3:71891153-71891172 Msa0469870:three_prime_UTR 40.0%
!!! ACGATTTTAACTCTGGTGAG+TGG - chr3_3:71891209-71891228 Msa0469870:three_prime_UTR 40.0%
! ACTTTTACGTTCCACCAAAG+CGG - chr3_3:71891232-71891251 Msa0469870:three_prime_UTR 40.0%
!! GAAGCAGTTATAGTTGGTGA+AGG - chr3_3:71891292-71891311 Msa0469870:three_prime_UTR 40.0%
!! TAGTTGGTGAAGGGTAGAAA+TGG - chr3_3:71891302-71891321 Msa0469870:three_prime_UTR 40.0%
TTAAGGTGAACAAGTACGCA+CGG + chr3_3:71891367-71891386 None:intergenic 40.0%
!! TGCTGGTTTAAGATCAACGT+TGG + chr3_3:71891586-71891605 None:intergenic 40.0%
! TAGTTCTTCAATGGTAGTGC+TGG + chr3_3:71891603-71891622 None:intergenic 40.0%
CTGACAGTAAAAAGACATGG+AGG + chr3_3:71891654-71891673 None:intergenic 40.0%
GCTCTGACAGTAAAAAGACA+TGG + chr3_3:71891657-71891676 None:intergenic 40.0%
CAGAAAAAGCCGAAAGCAAA+CGG + chr3_3:71892146-71892165 None:intergenic 40.0%
TCCAAACTCTTAGACCAGAT+CGG + chr3_3:71892616-71892635 None:intergenic 40.0%
!! AATTCAGGTTGCAAAAGCAC+GGG - chr3_3:71892883-71892902 Msa0469870:intron 40.0%
GATGAGGCATACAATGAGAA+TGG - chr3_3:71893049-71893068 Msa0469870:intron 40.0%
CTGTGTTCACTTACAAGATC+AGG + chr3_3:71893115-71893134 None:intergenic 40.0%
TCCTTGTTCAACTGTTGTTC+AGG - chr3_3:71893192-71893211 Msa0469870:intron 40.0%
ACCTGAACAACAGTTGAACA+AGG + chr3_3:71893196-71893215 None:intergenic 40.0%
CATGCCCATCTGAAGAATAT+GGG + chr3_3:71893243-71893262 None:intergenic 40.0%
TCATGCCCATCTGAAGAATA+TGG + chr3_3:71893244-71893263 None:intergenic 40.0%
TATTCTTCAGATGGGCATGA+CGG - chr3_3:71893244-71893263 Msa0469870:intron 40.0%
! TAATGCTAGAAGTATGCTGC+TGG + chr3_3:71893451-71893470 None:intergenic 40.0%
CAACACAAGTTCATACAGGA+AGG + chr3_3:71893578-71893597 None:intergenic 40.0%
CTTCCTGTATGAACTTGTGT+TGG - chr3_3:71893576-71893595 Msa0469870:intron 40.0%
! ACTTGTGTTGGTAAAAGCCT+AGG - chr3_3:71893588-71893607 Msa0469870:intron 40.0%
TACTCACCTTCTATGTTCCA+AGG - chr3_3:71893848-71893867 Msa0469870:intron 40.0%
GGATCTAGACTTACTATCGA+TGG - chr3_3:71894280-71894299 Msa0469870:intron 40.0%
! TAGGTTGTAGCATTGGGTAT+CGG - chr3_3:71894313-71894332 Msa0469870:intron 40.0%
CATTTCCATTATGCACAAGC+TGG - chr3_3:71894383-71894402 Msa0469870:CDS 40.0%
AGAAACCAGCTTGTGCATAA+TGG + chr3_3:71894391-71894410 None:intergenic 40.0%
ACCTGTTGGCAACCAATAAA+CGG + chr3_3:71894665-71894684 None:intergenic 40.0%
! AGGTACGCGAGTTCATTTTA+TGG - chr3_3:71894681-71894700 Msa0469870:intron 40.0%
AGTCCAATGCTTCCCTAAAT+GGG + chr3_3:71894707-71894726 None:intergenic 40.0%
TGGCACTCAGTTCAATTTCA+AGG + chr3_3:71894768-71894787 None:intergenic 40.0%
CAAAAGCTATCAGATGAACC+CGG - chr3_3:71894849-71894868 Msa0469870:intron 40.0%
! AGAGGCTTTGACTGAAATGA+GGG - chr3_3:71894882-71894901 Msa0469870:intron 40.0%
ATGAGGGAAGATGAATCAGA+AGG - chr3_3:71894898-71894917 Msa0469870:intron 40.0%
GGAGCTGATATTCTATTGGT+TGG - chr3_3:71894919-71894938 Msa0469870:intron 40.0%
ATATCCAAATAAGGAAGCCC+AGG + chr3_3:71895041-71895060 None:intergenic 40.0%
CTCATGTGAATCTTCCAGTT+TGG - chr3_3:71895316-71895335 Msa0469870:intron 40.0%
AGCAGTTCATATTCCCAAAC+TGG + chr3_3:71895333-71895352 None:intergenic 40.0%
TTACAGATGGGTAAGGGAAA+AGG + chr3_3:71895560-71895579 None:intergenic 40.0%
! TTTTCCCTTACCCATCTGTA+AGG - chr3_3:71895559-71895578 Msa0469870:intron 40.0%
ATGTTCCAGACCTTACAGAT+GGG + chr3_3:71895572-71895591 None:intergenic 40.0%
CTGGAACATCATTTAGACAG+TGG - chr3_3:71895583-71895602 Msa0469870:intron 40.0%
TGGTGAGTACTCGATGATTA+AGG - chr3_3:71895842-71895861 Msa0469870:CDS 40.0%
! AGGACAATTTTCTTCCCAGA+AGG - chr3_3:71896021-71896040 Msa0469870:five_prime_UTR 40.0%
TCTCTTGTGCGTTTCACGTT+CGG + chr3_3:71891146-71891165 None:intergenic 45.0%
GAAGAGAAAAGGAACGTTGC+TGG - chr3_3:71891164-71891183 Msa0469870:three_prime_UTR 45.0%
TAAGGTGAACAAGTACGCAC+GGG + chr3_3:71891366-71891385 None:intergenic 45.0%
GCTGATCTTCTATTACGACG+AGG + chr3_3:71891911-71891930 None:intergenic 45.0%
AGCTTGCATCCGTTTGCTTT+CGG - chr3_3:71892134-71892153 Msa0469870:intron 45.0%
! TTGAACCCTTTTTGCAGGTG+AGG - chr3_3:71892257-71892276 Msa0469870:intron 45.0%
ACCGATCTGGTCTAAGAGTT+TGG - chr3_3:71892612-71892631 Msa0469870:intron 45.0%
TTGTATGCCTCATCTCCTGT+GGG + chr3_3:71893043-71893062 None:intergenic 45.0%
ATTGTATGCCTCATCTCCTG+TGG + chr3_3:71893044-71893063 None:intergenic 45.0%
GACGGCATTGTTAGAGAAGA+TGG - chr3_3:71893262-71893281 Msa0469870:intron 45.0%
TTCTTGAAGGAAGTGGCAAG+TGG - chr3_3:71893630-71893649 Msa0469870:intron 45.0%
TTGTAAACAAGCTGTAGCCC+AGG - chr3_3:71893747-71893766 Msa0469870:intron 45.0%
! ATTTTATGAAAGGCCCGTGC+TGG - chr3_3:71893932-71893951 Msa0469870:intron 45.0%
!! GATATGATGGATGGTCGTGT+TGG - chr3_3:71893977-71893996 Msa0469870:intron 45.0%
!!! CTGTTTTTGCCTGCATGCAT+TGG - chr3_3:71894108-71894127 Msa0469870:intron 45.0%
GCAGCTACAAGATGCACTAA+AGG + chr3_3:71894475-71894494 None:intergenic 45.0%
AAATGAACTCGCGTACCTGT+TGG + chr3_3:71894679-71894698 None:intergenic 45.0%
GAGTCCAATGCTTCCCTAAA+TGG + chr3_3:71894708-71894727 None:intergenic 45.0%
ACGTTGCCATATACTTGGTC+TGG - chr3_3:71894821-71894840 Msa0469870:intron 45.0%
GTTCAGCCAGACCAAGTATA+TGG + chr3_3:71894830-71894849 None:intergenic 45.0%
! AAAGCCTCTCTGTAGTTTGC+CGG + chr3_3:71894871-71894890 None:intergenic 45.0%
! GAGAGGCTTTGACTGAAATG+AGG - chr3_3:71894881-71894900 Msa0469870:intron 45.0%
AGAACCTGGTATGCTGCAAT+TGG + chr3_3:71895095-71895114 None:intergenic 45.0%
CAGACCTTACAGATGGGTAA+GGG + chr3_3:71895566-71895585 None:intergenic 45.0%
GATGTTCCAGACCTTACAGA+TGG + chr3_3:71895573-71895592 None:intergenic 45.0%
TGACCCCCTTTATTCACAAC+AGG - chr3_3:71895815-71895834 Msa0469870:CDS 45.0%
GAGTACTCGATGATTAAGGC+TGG - chr3_3:71895846-71895865 Msa0469870:CDS 45.0%
TACTCGATGATTAAGGCTGG+TGG - chr3_3:71895849-71895868 Msa0469870:CDS 45.0%
ACTCGATGATTAAGGCTGGT+GGG - chr3_3:71895850-71895869 Msa0469870:CDS 45.0%
TGTTAGGATGATGTCAGCAC+CGG + chr3_3:71895937-71895956 None:intergenic 45.0%
! CAAGCTGCGAGATTTTTGTG+TGG - chr3_3:71895969-71895988 Msa0469870:five_prime_UTR 45.0%
! GTCAAATGCTTTGAGCTCTC+TGG + chr3_3:71896047-71896066 None:intergenic 45.0%
! GCTCAAAGCATTTGACAGTG+TGG - chr3_3:71896051-71896070 Msa0469870:five_prime_UTR 45.0%
!!! AAAAAAAAAAACATTTTTAA+AGG - chr3_3:71892549-71892568 Msa0469870:CDS 5.0%
!!! AAAAAAAAAACATTTTTAAA+GGG - chr3_3:71892550-71892569 Msa0469870:CDS 5.0%
!!! TTTAAAATAGATTAAATATT+TGG + chr3_3:71894788-71894807 None:intergenic 5.0%
CGTAATCGGAGATTGAAGCG+TGG + chr3_3:71891506-71891525 None:intergenic 50.0%
CACATTACCAGCGACAACAG+CGG + chr3_3:71891700-71891719 None:intergenic 50.0%
! TGTTGTCGCTGGTAATGTGC+CGG - chr3_3:71891701-71891720 Msa0469870:intron 50.0%
CTCACAAGTGAAGTCACCAC+TGG + chr3_3:71891771-71891790 None:intergenic 50.0%
TACACATCGATCCGCGTTTC+AGG - chr3_3:71891931-71891950 Msa0469870:intron 50.0%
! AACCCTTTTTGCAGGTGAGG+AGG - chr3_3:71892260-71892279 Msa0469870:intron 50.0%
GTCCTCCTCACCTGCAAAAA+GGG + chr3_3:71892265-71892284 None:intergenic 50.0%
TGTCCTCCTCACCTGCAAAA+AGG + chr3_3:71892266-71892285 None:intergenic 50.0%
ATCCGGGCATAGCACCAATT+GGG + chr3_3:71892290-71892309 None:intergenic 50.0%
! TACAGGCTTGGTTGGAGACA+CGG - chr3_3:71892312-71892331 Msa0469870:intron 50.0%
! GTTGCAAAAGCACGGGATGT+TGG - chr3_3:71892890-71892909 Msa0469870:intron 50.0%
ATCTCCTGTGGGGGTCTAAA+GGG + chr3_3:71893032-71893051 None:intergenic 50.0%
TGTATGCCTCATCTCCTGTG+GGG + chr3_3:71893042-71893061 None:intergenic 50.0%
GACCATCCATCATATCGCTG+GGG + chr3_3:71893973-71893992 None:intergenic 50.0%
CGACCATCCATCATATCGCT+GGG + chr3_3:71893974-71893993 None:intergenic 50.0%
ACGACCATCCATCATATCGC+TGG + chr3_3:71893975-71893994 None:intergenic 50.0%
ACGCTACGGTTATTGGCGAA+AGG + chr3_3:71894445-71894464 None:intergenic 50.0%
! GCCGTTTATTGGTTGCCAAC+AGG - chr3_3:71894661-71894680 Msa0469870:intron 50.0%
! TGGCCCATTTAGGGAAGCAT+TGG - chr3_3:71894701-71894720 Msa0469870:intron 50.0%
! TTGGACTCAAACCCCCGTTT+TGG - chr3_3:71894720-71894739 Msa0469870:intron 50.0%
! AAGCCTCTCTGTAGTTTGCC+GGG + chr3_3:71894870-71894889 None:intergenic 50.0%
GAAGCCTGGGCTTCCTTATT+TGG - chr3_3:71895034-71895053 Msa0469870:intron 50.0%
TGGTATGCTGCAATTGGCAG+CGG + chr3_3:71895089-71895108 None:intergenic 50.0%
CAGCATACCAGGTTCTTCTC+TGG - chr3_3:71895099-71895118 Msa0469870:intron 50.0%
!! CTCTGGCCCATTCTAGTTCT+TGG - chr3_3:71895116-71895135 Msa0469870:CDS 50.0%
TTTATATCGAGCTGGGGCAC+AGG - chr3_3:71895164-71895183 Msa0469870:intron 50.0%
CCAGACCTTACAGATGGGTA+AGG + chr3_3:71895567-71895586 None:intergenic 50.0%
CCTTACCCATCTGTAAGGTC+TGG - chr3_3:71895564-71895583 Msa0469870:intron 50.0%
CTCGATGATTAAGGCTGGTG+GGG - chr3_3:71895851-71895870 Msa0469870:CDS 50.0%
TTACTGTGCCTTAGACGTGC+CGG - chr3_3:71895915-71895934 Msa0469870:exon 50.0%
! TTTGAGCTCTCTGGCCTTCT+GGG + chr3_3:71896038-71896057 None:intergenic 50.0%
GAACAAGTACGCACGGGACA+TGG + chr3_3:71891360-71891379 None:intergenic 55.0%
!! ACCCCAATTGGTGCTATGCC+CGG - chr3_3:71892285-71892304 Msa0469870:intron 55.0%
TCCGGGCATAGCACCAATTG+GGG + chr3_3:71892289-71892308 None:intergenic 55.0%
CATCCGGGCATAGCACCAAT+TGG + chr3_3:71892291-71892310 None:intergenic 55.0%
CAACCAAGCCTGTAGCATCC+GGG + chr3_3:71892306-71892325 None:intergenic 55.0%
CCAACCAAGCCTGTAGCATC+CGG + chr3_3:71892307-71892326 None:intergenic 55.0%
! GAGACACGGACTGTTGCAAG+AGG - chr3_3:71892326-71892345 Msa0469870:intron 55.0%
TCTCCTGTGGGGGTCTAAAG+GGG + chr3_3:71893031-71893050 None:intergenic 55.0%
CATCTCCTGTGGGGGTCTAA+AGG + chr3_3:71893033-71893052 None:intergenic 55.0%
TTAGACCCCCACAGGAGATG+AGG - chr3_3:71893033-71893052 Msa0469870:intron 55.0%
GTATGCCTCATCTCCTGTGG+GGG + chr3_3:71893041-71893060 None:intergenic 55.0%
TGACCACATCTGCTCCAGCA+CGG + chr3_3:71893949-71893968 None:intergenic 55.0%
! AGCCCCAGCGATATGATGGA+TGG - chr3_3:71893968-71893987 Msa0469870:intron 55.0%
GAACCCGGCAAACTACAGAG+AGG - chr3_3:71894864-71894883 Msa0469870:intron 55.0%
TTGCATGTGCAGGTGAAGCC+TGG - chr3_3:71895020-71895039 Msa0469870:intron 55.0%
TGCATGTGCAGGTGAAGCCT+GGG - chr3_3:71895021-71895040 Msa0469870:intron 55.0%
GCTGCCAATTGCAGCATACC+AGG - chr3_3:71895088-71895107 Msa0469870:intron 55.0%
GAATGGGCCAGAGAAGAACC+TGG + chr3_3:71895109-71895128 None:intergenic 55.0%
! GAGCTGGGGCACAGGTTTTA+TGG - chr3_3:71895172-71895191 Msa0469870:intron 55.0%
! GGGTAGGGTGTCAAGCATCA+TGG + chr3_3:71895707-71895726 None:intergenic 55.0%
! CTTTGAGCTCTCTGGCCTTC+TGG + chr3_3:71896039-71896058 None:intergenic 55.0%
TTCGAAGCCGCTGTTGTCGC+TGG - chr3_3:71891690-71891709 Msa0469870:intron 60.0%
TGTACCTGCTGGAACGCCAG+TGG - chr3_3:71891752-71891771 Msa0469870:intron 60.0%
CGACGAGGACGCCTCTGAAT+TGG + chr3_3:71891896-71891915 None:intergenic 60.0%
GGTGAGGAGGACACCCCAAT+TGG - chr3_3:71892273-71892292 Msa0469870:intron 60.0%
GTGCTATGCCCGGATGCTAC+AGG - chr3_3:71892295-71892314 Msa0469870:intron 60.0%
ATGCCCGGATGCTACAGGCT+TGG - chr3_3:71892300-71892319 Msa0469870:intron 60.0%
! CCGGATGCTACAGGCTTGGT+TGG - chr3_3:71892304-71892323 Msa0469870:intron 60.0%
TTCCCCCTTTAGACCCCCAC+AGG - chr3_3:71893025-71893044 Msa0469870:intron 60.0%
CTCCTGTGGGGGTCTAAAGG+GGG + chr3_3:71893030-71893049 None:intergenic 60.0%
GACCACATCTGCTCCAGCAC+GGG + chr3_3:71893948-71893967 None:intergenic 60.0%
GGTCAGCCCCAGCGATATGA+TGG - chr3_3:71893964-71893983 Msa0469870:intron 60.0%
CGAGCAGCTCTCGATGCTGA+AGG - chr3_3:71894007-71894026 Msa0469870:intron 60.0%
!! TGTCAGCACCGGCACGTCTA+AGG + chr3_3:71895926-71895945 None:intergenic 60.0%
GCCTCCTGTACCGCCTACAC+CGG - chr3_3:71891728-71891747 Msa0469870:intron 65.0%
ACAGCCGGTGTAGGCGGTAC+AGG + chr3_3:71891735-71891754 None:intergenic 65.0%
GCAGGTACAGCCGGTGTAGG+CGG + chr3_3:71891741-71891760 None:intergenic 65.0%
CCAGCAGGTACAGCCGGTGT+AGG + chr3_3:71891744-71891763 None:intergenic 65.0%
! CCTACACCGGCTGTACCTGC+TGG - chr3_3:71891741-71891760 Msa0469870:intron 65.0%
GGCGTTCCAGCAGGTACAGC+CGG + chr3_3:71891750-71891769 None:intergenic 65.0%
GTCACCACTGGCGTTCCAGC+AGG + chr3_3:71891759-71891778 None:intergenic 65.0%
! GGCGGTACAGGAGGCGCATC+CGG + chr3_3:71891723-71891742 None:intergenic 70.0%
GCCGGTGTAGGCGGTACAGG+AGG + chr3_3:71891732-71891751 None:intergenic 70.0%
GGCCCGTGCTGGAGCAGATG+TGG - chr3_3:71893943-71893962 Msa0469870:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71891141 71896315 71891141 ID=Msa0469870;Name=Msa0469870
chr3_3 mRNA 71891141 71896315 71891141 ID=Msa0469870-mRNA-1;Parent=Msa0469870;Name=Msa0469870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=390|1|1|1|0.91|0.84|13|290|413
chr3_3 exon 71891141 71891344 71891141 ID=Msa0469870-mRNA-1:exon:17760;Parent=Msa0469870-mRNA-1
chr3_3 exon 71891366 71891619 71891366 ID=Msa0469870-mRNA-1:exon:17759;Parent=Msa0469870-mRNA-1
chr3_3 exon 71892347 71892424 71892347 ID=Msa0469870-mRNA-1:exon:17758;Parent=Msa0469870-mRNA-1
chr3_3 exon 71892520 71892601 71892520 ID=Msa0469870-mRNA-1:exon:17757;Parent=Msa0469870-mRNA-1
chr3_3 exon 71892702 71892773 71892702 ID=Msa0469870-mRNA-1:exon:17756;Parent=Msa0469870-mRNA-1
chr3_3 exon 71893391 71893512 71893391 ID=Msa0469870-mRNA-1:exon:17755;Parent=Msa0469870-mRNA-1
chr3_3 exon 71893688 71893743 71893688 ID=Msa0469870-mRNA-1:exon:17754;Parent=Msa0469870-mRNA-1
chr3_3 exon 71894173 71894242 71894173 ID=Msa0469870-mRNA-1:exon:17753;Parent=Msa0469870-mRNA-1
chr3_3 exon 71894336 71894419 71894336 ID=Msa0469870-mRNA-1:exon:17752;Parent=Msa0469870-mRNA-1
chr3_3 exon 71894498 71894566 71894498 ID=Msa0469870-mRNA-1:exon:17751;Parent=Msa0469870-mRNA-1
chr3_3 exon 71895109 71895182 71895109 ID=Msa0469870-mRNA-1:exon:17750;Parent=Msa0469870-mRNA-1
chr3_3 exon 71895452 71895563 71895452 ID=Msa0469870-mRNA-1:exon:17749;Parent=Msa0469870-mRNA-1
chr3_3 exon 71895671 71896315 71895671 ID=Msa0469870-mRNA-1:exon:17748;Parent=Msa0469870-mRNA-1
chr3_3 five_prime_UTR 71895926 71896315 71895926 ID=Msa0469870-mRNA-1:five_prime_utr;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71895671 71895925 71895671 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71895452 71895563 71895452 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71895109 71895182 71895109 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71894498 71894566 71894498 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71894336 71894419 71894336 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71894173 71894242 71894173 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71893688 71893743 71893688 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71893391 71893512 71893391 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71892702 71892773 71892702 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71892520 71892601 71892520 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71892347 71892424 71892347 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 CDS 71891452 71891619 71891452 ID=Msa0469870-mRNA-1:cds;Parent=Msa0469870-mRNA-1
chr3_3 three_prime_UTR 71891366 71891451 71891366 ID=Msa0469870-mRNA-1:three_prime_utr;Parent=Msa0469870-mRNA-1
chr3_3 three_prime_UTR 71891141 71891344 71891141 ID=Msa0469870-mRNA-1:three_prime_utr;Parent=Msa0469870-mRNA-1
Gene Sequence

>Msa0469870

ATGGCTTCTTCTTCAACAATTCCAAACACACCCTTAACCTTAAATTCACACACCAACGTTGATCTTAAACCAGCACTACCATTGAAGAACTATTTGAGCTTCTCTTTATCAAAGCGTCGACCTCCATGTCTTTTTACTGTCAGAGCTAGTGATGCAGATTTCGAAGCCGCTGTTGTCGCTGGTAATGTGCCGGATGCGCCTCCTGTACCGCCTACACCGGCTGTACCTGCTGGAACGCCAGTGGTGACTTCACTTCCAATTCAGAGGCGTCCTCGTCGTAATAGAAGATCAGCTACACATCGATCCGCGTTTCAGGAAACAACTTTATCACCTACTAATTTTGTTTATCCACTTTTTATACATGAAGGTGAGGAGGACACCCCAATTGGTGCTATGCCCGGATGCTACAGGCTTGGTTGGAGACACGGACTGTTGCAAGAGGTTGCAAAAGCACGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGACCCCCACAGGAGATGAGGCATACAATGAGAATGGCTTAGTGCCTCGAACTATACGATTACTTAAGGATAAATACCCTGATCTTGTTATTTATACAGATGTTGCATTAGACCCATATTCTTCAGATGGGCATGACGGCATTGTTAGAGAAGATGGAGTTATCATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGCCCGTGCTGGAGCAGATGTGGTCAGCCCCAGCGATATGATGGATGGTCGTGTTGGAGCAATGCGAGCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCATATACAGCAAAGTACGCGAGTTCATTTTATGGCCCATTTAGGGAAGCATTGGACTCAAACCCCCGTTTTGGAGATAAAAAGACCTATCAGATGAACCCGGCAAACTACAGAGAGGCTTTGACTGAAATGAGGGAAGATGAATCAGAAGGAGCTGATATTCTATTGGTGAAGCCTGGGCTTCCTTATTTGGATATCATAAGGCTACTCAGAGATAATTCTCCGCTGCCAATTGCAGCATACCAGGTTTCTGGTGAGTACTCGATGATTAAGGCTGGTGGGGCTCTTAAAATGATTGATGAAGAAAAGGTGATGATGGAGTCATTACTGTGCCTTAGACGTGCCGGTGCTGACATCATCCTAACATATTTTGCTCTACAAGCTGCGAGATTTTTGTGTGGAGAAAAAAGGTGA

Protein sequence

>Msa0469870

MASSSTIPNTPLTLNSHTNVDLKPALPLKNYLSFSLSKRRPPCLFTVRASDADFEAAVVAGNVPDAPPVPPTPAVPAGTPVVTSLPIQRRPRRNRRSATHRSAFQETTLSPTNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLLQEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNENGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARFLCGEKR*