AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072600 MtrunA17_Chr1g0179631 84.211 893 97 7 37 900 1 878 0.0 1389
Msa0072600 MtrunA17_Chr3g0086081 33.779 299 168 10 550 832 1 285 9.58e-37 142
Msa0072600 MtrunA17_Chr4g0010341 31.210 157 102 2 538 690 185 339 7.44e-25 109
Msa0072600 MtrunA17_Chr4g0039731 30.120 249 166 4 537 782 165 408 9.07e-20 95.1
Msa0072600 MtrunA17_Chr4g0025081 28.502 207 141 3 535 734 226 432 9.06e-18 87.8
Msa0072600 MtrunA17_Chr1g0179111 27.734 256 148 9 459 684 145 393 1.60e-15 80.5
Msa0072600 MtrunA17_Chr1g0176161 25.000 456 276 12 450 866 51 479 2.31e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 290 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATACATGTAATGGAAAT+TGG 0.167483 1_2:+45650096 None:intergenic
GATATACAAGTAATGGAAAT+TGG 0.185502 1_2:+45649814 None:intergenic
TCACTTGATAGTGGATATTT+TGG 0.205904 1_2:+45650038 None:intergenic
AGGTTTAAAATATCCCTTTC+TGG 0.230565 1_2:+45647709 None:intergenic
GACTGTATGGCAAAGTTTAT+TGG 0.246279 1_2:-45649067 Msa0072600:CDS
CCTTGTGTTCCTTGAAATCC+TGG 0.250219 1_2:+45649663 None:intergenic
TTGTAGAACCTCAACCAAAT+TGG 0.252973 1_2:+45648394 None:intergenic
TAGGGAGTTGGTTCCCAATT+TGG 0.269466 1_2:-45648408 Msa0072600:CDS
TCGCAAGTGGCGCACTCATC+TGG 0.284232 1_2:-45650957 Msa0072600:CDS
TTAGGATGACTAGACTTTAA+TGG 0.313659 1_2:+45649636 None:intergenic
TGATGGAACCTCTTTCTTGT+AGG 0.317594 1_2:+45648968 None:intergenic
TTGCCCTATCGTCATCATTT+AGG 0.327091 1_2:+45649337 None:intergenic
TTCACAGACTTACCCTTTAG+TGG 0.344824 1_2:+45649515 None:intergenic
ATCTCAGCGTCCGCCTTATC+AGG 0.352764 1_2:-45649610 Msa0072600:CDS
GATACACAGCTGATGAAGTA+TGG 0.355135 1_2:+45650453 None:intergenic
GATACACAGCTGATGAAGTA+TGG 0.355135 1_2:+45650744 None:intergenic
TTGAGGGAAGTTCGTCTTAA+GGG 0.355793 1_2:-45649114 Msa0072600:CDS
AATGTCAATACTATCACTTC+TGG 0.364657 1_2:-45647770 Msa0072600:three_prime_UTR
AACATCTTTCCCCTTATCAT+TGG 0.367203 1_2:+45651015 None:intergenic
AAAGTAACTCGAGTAGTTTC+TGG 0.368232 1_2:-45649945 Msa0072600:CDS
ACATCTTTCCCCTTATCATT+GGG 0.370025 1_2:+45651016 None:intergenic
AGTAATGGAAATTGGGTAGA+TGG 0.384566 1_2:+45649822 None:intergenic
TACGTGTTGCGTTGTGTTGA+TGG 0.386656 1_2:+45648951 None:intergenic
GGCCCCTTTCTTGTAGTTGA+CGG 0.387502 1_2:+45648484 None:intergenic
TTACCTGATTCTTTCTAGAA+TGG 0.393574 1_2:+45648751 None:intergenic
TGTAATGGAAATTGGGTAGA+TGG 0.393624 1_2:+45650104 None:intergenic
TTTGAAGGTTCACTTGATAG+TGG 0.397186 1_2:+45650029 None:intergenic
TGTAGAACCTCAACCAAATT+GGG 0.399007 1_2:+45648395 None:intergenic
TATGTAGGTGGTGGATAAAT+AGG 0.400107 1_2:+45650377 None:intergenic
CATGAGTCTTAATATTCCTT+TGG 0.400784 1_2:-45648462 Msa0072600:CDS
TTTGTAGGTGGTGGATAAAT+AGG 0.401237 1_2:+45650668 None:intergenic
ACTAACCCACCCAATGATAA+GGG 0.402555 1_2:-45651025 Msa0072600:CDS
TCACATAATGTCATTGCTAT+TGG 0.405215 1_2:+45646627 None:intergenic
CTAGGTGGACGCTTCTTTGA+AGG 0.409645 1_2:+45650014 None:intergenic
ACCTCGATTCCTTTGAAAAG+AGG 0.410029 1_2:-45647690 Msa0072600:intron
GTTGAGGGAAGTTCGTCTTA+AGG 0.412066 1_2:-45649115 Msa0072600:CDS
AAGCGTCCACCTAGTGATAA+GGG 0.413682 1_2:-45650005 Msa0072600:CDS
TGACCATTCTAGAAAGAATC+AGG 0.425997 1_2:-45648754 Msa0072600:intron
GGCAAAGTTTATTGGAGCAT+TGG 0.431611 1_2:-45649059 Msa0072600:CDS
GTTATTCAACCTTCCACTAA+AGG 0.432341 1_2:-45649528 Msa0072600:CDS
TTATTCAACCTTCCACTAAA+GGG 0.433677 1_2:-45649527 Msa0072600:intron
ACCACTTGTTCGGGTGTAGT+TGG 0.436086 1_2:-45648539 Msa0072600:CDS
ATATACATGTAATGGAAATT+GGG 0.437628 1_2:+45650097 None:intergenic
GTTCCTTGAAATCCTGGGTT+GGG 0.437913 1_2:+45649669 None:intergenic
ACTCAGATCATGAAGGAAAC+TGG 0.440348 1_2:-45648789 Msa0072600:CDS
AACTAACCCACCCAATGATA+AGG 0.441389 1_2:-45651026 Msa0072600:CDS
TGTTCCTTGAAATCCTGGGT+TGG 0.444757 1_2:+45649668 None:intergenic
TCGTCGGCACAGGTATAAAT+TGG 0.445880 1_2:+45650192 None:intergenic
AGAGGAGTTCAAACGTGAAC+GGG 0.446513 1_2:-45648824 Msa0072600:CDS
GCAGGGTTACAACTCATAGA+TGG 0.450605 1_2:+45648584 None:intergenic
TCATCGGCATAGGTATAAAC+TGG 0.451031 1_2:+45649910 None:intergenic
ATATACAAGTAATGGAAATT+GGG 0.451555 1_2:+45649815 None:intergenic
GACACCCTTCCCCTTACCAC+TGG 0.453777 1_2:+45650274 None:intergenic
CAAGCGGCCACCCAGTGGTA+AGG 0.455295 1_2:-45650285 Msa0072600:CDS
ATGCCCAACCCAGGATTTCA+AGG 0.458880 1_2:-45649672 Msa0072600:CDS
CCACCCGACAATGGATTTGT+AGG 0.461139 1_2:+45650317 None:intergenic
ATTGGATAGGCGAGACTGTA+TGG 0.461345 1_2:-45649080 Msa0072600:CDS
CCACCCGACAACGGATTTGT+AGG 0.461868 1_2:+45650653 None:intergenic
TTTAGTGGATATACATGTAA+TGG 0.462255 1_2:+45650089 None:intergenic
GTTGGTTCCCAATTTGGTTG+AGG 0.463056 1_2:-45648402 Msa0072600:CDS
CTTGTGTTCCTTGAAATCCT+GGG 0.463860 1_2:+45649664 None:intergenic
GGAGGCTGAGTATAGGTATG+AGG 0.464859 1_2:+45649864 None:intergenic
GAAGCGTCCACCTAGTGATA+AGG 0.465742 1_2:-45650006 Msa0072600:CDS
GGGATTAACATGTTTGATGA+TGG 0.472319 1_2:-45649558 Msa0072600:CDS
AAACGTGAACGGGCTTCATA+AGG 0.475012 1_2:-45648814 Msa0072600:CDS
GTTCACGTTTGAACTCCTCT+TGG 0.475194 1_2:+45648827 None:intergenic
GGCACAGGTATAAATTGGTC+TGG 0.477208 1_2:+45650197 None:intergenic
GATCAGAGGGTTGGAGGCGG+CGG 0.480017 1_2:+45648174 None:intergenic
TGAGAACTGGTAGGTGGAGG+TGG 0.480811 1_2:+45650131 None:intergenic
CCATCTTGACCAGCCTGATA+AGG 0.480953 1_2:+45649597 None:intergenic
CGGGTGGACTTTCACACAAA+CGG 0.482984 1_2:-45650637 Msa0072600:CDS
CTGGGTGGCCGCTTGTGTAA+AGG 0.484039 1_2:+45650293 None:intergenic
AACCAACTCCCTACCACTAC+AGG 0.484892 1_2:+45648418 None:intergenic
AGAAACATGGCATCAAAGAA+AGG 0.485403 1_2:-45648997 Msa0072600:CDS
GGGGCAACAACATCCTTAGC+AGG 0.485567 1_2:+45648566 None:intergenic
GCTAGAATGACTAGTGGTAA+TGG 0.486198 1_2:+45650247 None:intergenic
CAACTGCACTTTACCAGAAA+GGG 0.486789 1_2:-45647722 Msa0072600:three_prime_UTR
GAAACATGGCATCAAAGAAA+GGG 0.487800 1_2:-45648996 Msa0072600:CDS
CTCTGATCATGAGTCTACTT+TGG 0.487817 1_2:-45648159 Msa0072600:CDS
CATTCTAGCAAGGTAACTCC+TGG 0.488789 1_2:-45650233 Msa0072600:CDS
TCTTTCCCCTTATCATTGGG+TGG 0.488915 1_2:+45651019 None:intergenic
TTGAAATCCTGGGTTGGGCA+TGG 0.490031 1_2:+45649674 None:intergenic
ATGCCGTCAACTACAAGAAA+GGG 0.493045 1_2:-45648487 Msa0072600:CDS
TGCGGTGGATATACAAGTAA+TGG 0.493457 1_2:+45649807 None:intergenic
TATCCTGATGGTGTATGTTT+CGG 0.493683 1_2:+45650701 None:intergenic
GATGGTGCATAGGCATTTAG+TGG 0.494838 1_2:+45650074 None:intergenic
CCACCGAAACATACACCATC+AGG 0.495567 1_2:-45650704 Msa0072600:CDS
CCACCGAAACTTACACCATC+GGG 0.496584 1_2:-45650413 Msa0072600:CDS
GACAATGGATTTGTAGGTGG+TGG 0.498910 1_2:+45650323 None:intergenic
TGATCATGAGTCTACTTTGG+TGG 0.499231 1_2:-45648156 Msa0072600:CDS
CTTTCCCCTTATCATTGGGT+GGG 0.499770 1_2:+45651020 None:intergenic
TGAGTATAGGTATGAGGAGA+TGG 0.499968 1_2:+45649870 None:intergenic
AACGCAACACGTAACTCAAA+TGG 0.500116 1_2:-45648941 Msa0072600:intron
GCCACCCAGTGGTAAGGGGA+AGG 0.502442 1_2:-45650279 Msa0072600:CDS
GAAGTATGGGTAGGTGGAGG+CGG 0.502512 1_2:+45650758 None:intergenic
GGTAGATGGAGATTGAGAAC+TGG 0.505071 1_2:+45650118 None:intergenic
GATATCGCATCCACTACTAA+TGG 0.505243 1_2:-45649978 Msa0072600:CDS
CCACCTACAAATCCGTTGTC+GGG 0.507001 1_2:-45650656 Msa0072600:CDS
CCACCTACAAATCCATTGTC+GGG 0.509021 1_2:-45650320 Msa0072600:CDS
CAATAGATAAACATGTCATC+AGG 0.512057 1_2:-45651052 Msa0072600:intron
AGCCTGTAGTGGTAGGGAGT+TGG 0.512995 1_2:-45648420 Msa0072600:CDS
CAAACGGCCAGTCAGTGGTA+AGG 0.513566 1_2:-45650621 Msa0072600:CDS
GCCAGTCAGTGGTAAGGGGA+AGG 0.513865 1_2:-45650615 Msa0072600:CDS
ATAGGTATAAACTGGTCTAA+AGG 0.514240 1_2:+45649918 None:intergenic
GGAACATAGGTACGAGGAGA+TGG 0.514609 1_2:+45650152 None:intergenic
GAGAGAATGACTAGTGGTAG+TGG 0.516279 1_2:+45650583 None:intergenic
CAAAGGAATATTAAGACTCA+TGG 0.516583 1_2:+45648463 None:intergenic
GTGTAGTTGGAGGTAAGAAA+AGG 0.517698 1_2:-45648526 Msa0072600:CDS
AAAAGCCACAGACAAAATGT+AGG 0.518392 1_2:-45649368 Msa0072600:CDS
CATCGTTAGCCTGTAGTGGT+AGG 0.519129 1_2:-45648427 Msa0072600:CDS
AAGCGGCCACCCAGTGGTAA+GGG 0.520413 1_2:-45650284 Msa0072600:CDS
GGTAGGTGGAGGCTGAGTAT+AGG 0.521908 1_2:+45649857 None:intergenic
TTGCTGAAGAAACGGACAGA+GGG 0.522070 1_2:-45648296 Msa0072600:CDS
ACCACCTACAAATCCATTGT+CGG 0.522590 1_2:-45650321 Msa0072600:CDS
GGAGGCGGCGGTGACGTCCA+TGG 0.522976 1_2:+45648186 None:intergenic
CTGTTGAGCGCACTCGCAAG+TGG 0.523090 1_2:-45650970 Msa0072600:CDS
ACCACCTACAAATCCGTTGT+CGG 0.525060 1_2:-45650657 Msa0072600:CDS
TATCCCGATGGTGTAAGTTT+CGG 0.525804 1_2:+45650410 None:intergenic
CCAGTCAGTGGTAAGGGGAA+GGG 0.526964 1_2:-45650614 Msa0072600:CDS
GTATCTTTAGTCAGCGGCAT+AGG 0.527229 1_2:+45650905 None:intergenic
AAACGGCCAGTCAGTGGTAA+GGG 0.527405 1_2:-45650620 Msa0072600:CDS
CAGCGTCCGCCTTATCAGGC+TGG 0.530739 1_2:-45649606 Msa0072600:CDS
AGTGGTAAGGGGAAGGGTGT+CGG 0.531423 1_2:-45650608 Msa0072600:CDS
GATCATGAGTCTACTTTGGT+GGG 0.532480 1_2:-45648155 Msa0072600:CDS
CCACTTGATAGTGGATATGT+AGG 0.532942 1_2:+45649726 None:intergenic
TGTGAAGGTCCACTTGATAG+TGG 0.533328 1_2:+45649717 None:intergenic
ACACCCTTCCCCTTACCACT+GGG 0.533838 1_2:+45650275 None:intergenic
ATCTGTGTATGTGCAGTTGT+CGG 0.534228 1_2:+45650512 None:intergenic
ACTCATGATCAGAGGGTTGG+AGG 0.534387 1_2:+45648168 None:intergenic
CCACCCAGTGGTAAGGGGAA+GGG 0.534766 1_2:-45650278 Msa0072600:CDS
AAATTATTCGCTCAAGACCA+TGG 0.535708 1_2:-45648203 Msa0072600:CDS
GACTGAGAACGGGTAGGTGG+AGG 0.537395 1_2:+45649846 None:intergenic
TGATAAGGCGGACGCTGAGA+TGG 0.537853 1_2:+45649612 None:intergenic
ACTCGAATTTCCTCGCGAGT+AGG 0.538984 1_2:+45650845 None:intergenic
AACAGTAGGTCTAGTAGTAG+TGG 0.539497 1_2:+45650988 None:intergenic
GATGCCGTCAACTACAAGAA+AGG 0.540009 1_2:-45648488 Msa0072600:CDS
CTACACCCGAACAAGTGGTA+AGG 0.540049 1_2:+45648543 None:intergenic
GGAGCATATGTACGAGGAGA+TGG 0.541412 1_2:+45650779 None:intergenic
AGTGGTAAGGGGAAGGGTGT+CGG 0.543479 1_2:-45650272 Msa0072600:CDS
ATGTTGCATCCACTACTACT+AGG 0.543509 1_2:-45650868 Msa0072600:CDS
CAGACTTACCCTTTAGTGGA+AGG 0.544209 1_2:+45649519 None:intergenic
AATGAGTGGTTGGAAAGTAA+TGG 0.544788 1_2:-45651649 Msa0072600:CDS
GTATGTGCAGTCGTCGGCAC+AGG 0.546385 1_2:+45650182 None:intergenic
ACTTGTTCGGGTGTAGTTGG+AGG 0.547278 1_2:-45648536 Msa0072600:CDS
CCTTATCAGGCTGGTCAAGA+TGG 0.548609 1_2:-45649597 Msa0072600:CDS
GGCGGACGCTGAGATGGCTT+AGG 0.550526 1_2:+45649618 None:intergenic
TCAACTGCACTTTACCAGAA+AGG 0.550910 1_2:-45647723 Msa0072600:three_prime_UTR
TAGACTCATGATCAGAGGGT+TGG 0.552877 1_2:+45648165 None:intergenic
GTGACCTAAATGATGACGAT+AGG 0.557016 1_2:-45649341 Msa0072600:CDS
AAGATCCTGTTCGAAAACTA+CGG 0.557292 1_2:-45648352 Msa0072600:CDS
TGAGCATATGTATGAGAAGA+TGG 0.562096 1_2:+45650488 None:intergenic
TATGAGTTGTAACCCTGCTA+AGG 0.563576 1_2:-45648579 Msa0072600:CDS
CCCTTCCCCTTACCACTGAC+TGG 0.566348 1_2:+45650614 None:intergenic
AGCGGCCACCCAGTGGTAAG+GGG 0.566990 1_2:-45650283 Msa0072600:CDS
GGAGATTGAGAACTGGTAGG+TGG 0.567399 1_2:+45650125 None:intergenic
TTTAGTTCCATGCCCAACCC+AGG 0.569175 1_2:-45649681 Msa0072600:CDS
GGTAGATGGAGACTGAGAAC+GGG 0.569951 1_2:+45649836 None:intergenic
GGCAATCAAGACGTTGATGT+TGG 0.570273 1_2:-45648134 Msa0072600:CDS
TCCAACTACACCCGAACAAG+TGG 0.570300 1_2:+45648538 None:intergenic
GGGTAGATGGAGACTGAGAA+CGG 0.570642 1_2:+45649835 None:intergenic
AAATACAGGAGAAGTGTACA+TGG 0.571389 1_2:-45649206 Msa0072600:intron
GGTCAGTGCCCACATTGGAT+AGG 0.573158 1_2:-45649093 Msa0072600:CDS
CCCGATGGTGTAAGTTTCGG+TGG 0.573397 1_2:+45650413 None:intergenic
GTCTGTGTATGTGCAGTCGT+GGG 0.574424 1_2:+45650803 None:intergenic
TTGCGAGTGCGCTCAACAGT+AGG 0.576521 1_2:+45650974 None:intergenic
ATCGTTAGCCTGTAGTGGTA+GGG 0.576808 1_2:-45648426 Msa0072600:CDS
AGCTGGTCTAAAACATGTTG+AGG 0.579381 1_2:+45650932 None:intergenic
TACACCCGAACAAGTGGTAA+GGG 0.579884 1_2:+45648544 None:intergenic
TGTAAAGGTCCACCCGACAA+TGG 0.581837 1_2:+45650308 None:intergenic
AAAGCCACAGACAAAATGTA+GGG 0.582116 1_2:-45649367 Msa0072600:CDS
ACCGCATACATATGCACCAC+CGG 0.582783 1_2:-45649790 Msa0072600:CDS
TTTGGCAGTGCGTATGTCGA+TGG 0.583317 1_2:+45650056 None:intergenic
ACCACCGAAACTTACACCAT+CGG 0.584439 1_2:-45650414 Msa0072600:CDS
TATGTAGGTGTTGGATATGT+CGG 0.584602 1_2:+45649741 None:intergenic
CACCCGAACAAGTGGTAAGG+GGG 0.585944 1_2:+45648546 None:intergenic
TGACCTAAATGATGACGATA+GGG 0.586015 1_2:-45649340 Msa0072600:CDS
TCTCGGAGGAAATGAGTGGT+TGG 0.586798 1_2:-45651659 None:intergenic
TGACTTGTCTGATATGTTGA+GGG 0.587957 1_2:-45649130 Msa0072600:CDS
ACATCATGCATATGCTCCAT+CGG 0.589782 1_2:-45650351 Msa0072600:CDS
GTATGTGCAGTCATCGGCAT+AGG 0.589843 1_2:+45649900 None:intergenic
AAGAGGAGTTCAAACGTGAA+CGG 0.590882 1_2:-45648825 Msa0072600:CDS
CCAGGATTTCAAGGAACACA+AGG 0.592183 1_2:-45649663 Msa0072600:CDS
GCGAGTAGGCCTAGTAGTAG+TGG 0.592919 1_2:+45650859 None:intergenic
CATGATCAGAGGGTTGGAGG+CGG 0.593298 1_2:+45648171 None:intergenic
GTCGGCGGTGCGGATGTCGA+CGG 0.593551 1_2:+45649759 None:intergenic
TACTACTAGGCCTACTCGCG+AGG 0.593671 1_2:-45650855 Msa0072600:CDS
GGTGGTGCATATGCATGTTG+TGG 0.593870 1_2:+45650431 None:intergenic
TGATGTGAATATGTAGGTGG+TGG 0.594089 1_2:+45650368 None:intergenic
TGCGTATGTCGATGGTGCAT+AGG 0.595753 1_2:+45650064 None:intergenic
GGTGGTGCATAGGCATGTTG+TGG 0.595863 1_2:+45650722 None:intergenic
ATACACAGCTGATGAAGTAT+GGG 0.598166 1_2:+45650454 None:intergenic
ATACACAGCTGATGAAGTAT+GGG 0.598166 1_2:+45650745 None:intergenic
GTAGGTGGTGGATTCACCGA+TGG 0.598426 1_2:+45650335 None:intergenic
CCACAGACAAAATGTAGGGA+TGG 0.598675 1_2:-45649363 Msa0072600:CDS
GGTAGGTGGAGGTGGAACAT+AGG 0.598829 1_2:+45650139 None:intergenic
GGGGAAAGCCTACAAGAAAG+AGG 0.599017 1_2:-45648976 Msa0072600:CDS
CGGGTGGACCTTTACACAAG+CGG 0.600983 1_2:-45650301 Msa0072600:CDS
TCTGGAGAACTAGAAACTCC+AGG 0.601740 1_2:+45650215 None:intergenic
GGAGACTGAGAACGGGTAGG+TGG 0.602886 1_2:+45649843 None:intergenic
AGATGGCATTCATGATGCTG+AGG 0.604447 1_2:-45649580 Msa0072600:CDS
TCAGCGGCATAGGTACAAGC+TGG 0.604900 1_2:+45650915 None:intergenic
CTGACTAAAGATACACAGAC+GGG 0.607010 1_2:-45650896 Msa0072600:CDS
GTATGTGCAGTCGTGGGCAT+AGG 0.609019 1_2:+45650809 None:intergenic
TGTATGTTTCGGTGGTGCAT+AGG 0.609183 1_2:+45650712 None:intergenic
GTAGGTGGTGGATAAATAGG+TGG 0.609496 1_2:+45650380 None:intergenic
GATGGCATTCATGATGCTGA+GGG 0.610481 1_2:-45649579 Msa0072600:CDS
GGTGGTTGTGTGTATCCTGA+TGG 0.611455 1_2:+45650689 None:intergenic
GCTGATGAAGTATGGGTAGG+TGG 0.612690 1_2:+45650461 None:intergenic
GCTGATGAAGTATGGGTAGG+TGG 0.612690 1_2:+45650752 None:intergenic
TACCACTAGTCATTCTCTCA+AGG 0.612823 1_2:-45650579 Msa0072600:CDS
GATTGAGAACTGGTAGGTGG+AGG 0.613125 1_2:+45650128 None:intergenic
CCTACATATCCACTATCAAG+TGG 0.613583 1_2:-45649726 Msa0072600:CDS
GTTTGTGTATGTGCAGTCAT+CGG 0.614271 1_2:+45649894 None:intergenic
GTCTGTGTATCTTTAGTCAG+CGG 0.615011 1_2:+45650899 None:intergenic
AGCGTCCACCTAGTGATAAG+GGG 0.616167 1_2:-45650004 Msa0072600:CDS
TTGGTGCCGATGATGAATGA+TGG 0.617362 1_2:-45648115 Msa0072600:intron
AGTCTGTGTATGTGCAGTCG+TGG 0.617498 1_2:+45650802 None:intergenic
GATAGTGGATATGTAGGTGT+TGG 0.619025 1_2:+45649732 None:intergenic
GACAACGGATTTGTAGGTGG+TGG 0.619207 1_2:+45650659 None:intergenic
GAAGCACCATCATTCATCAT+CGG 0.619327 1_2:+45648109 None:intergenic
TATGCATGATGTGAATATGT+AGG 0.619505 1_2:+45650362 None:intergenic
ACAGTCTCGCCTATCCAATG+TGG 0.619509 1_2:+45649084 None:intergenic
GATGCTCTTGCATTATCCAA+AGG 0.620366 1_2:+45648446 None:intergenic
ATCTGTGTATGTGCAGTCGT+CGG 0.624063 1_2:+45650176 None:intergenic
AAAGTAGACTCATGATCAGA+GGG 0.624247 1_2:+45648161 None:intergenic
TAAGGATACTCAGATCATGA+AGG 0.624522 1_2:-45648796 Msa0072600:CDS
CAAAGTAGACTCATGATCAG+AGG 0.624934 1_2:+45648160 None:intergenic
TTGTCGGTGCAGCTATACAT+TGG 0.624983 1_2:+45650528 None:intergenic
AACGGCCAGTCAGTGGTAAG+GGG 0.625413 1_2:-45650619 Msa0072600:CDS
CCTGATGGTGTATGTTTCGG+TGG 0.626388 1_2:+45650704 None:intergenic
GATGAAGTATGGGTAGGTGG+AGG 0.627193 1_2:+45650755 None:intergenic
TACCACTAGTCATTCTAGCA+AGG 0.630639 1_2:-45650243 Msa0072600:CDS
ACACCCGAACAAGTGGTAAG+GGG 0.633338 1_2:+45648545 None:intergenic
AGAGCATCGTTAGCCTGTAG+TGG 0.637169 1_2:-45648431 Msa0072600:CDS
GCGAGAACGACCATTAGTAG+TGG 0.637821 1_2:+45649968 None:intergenic
CAGTCTCGCCTATCCAATGT+GGG 0.638006 1_2:+45649085 None:intergenic
AAACATGGCATCAAAGAAAG+GGG 0.640330 1_2:-45648995 Msa0072600:CDS
TCTTGACCAGCCTGATAAGG+CGG 0.640440 1_2:+45649600 None:intergenic
CTAACCCACCCAATGATAAG+GGG 0.640535 1_2:-45651024 Msa0072600:CDS
TGTGAAAGTCCACCCGACAA+CGG 0.640872 1_2:+45650644 None:intergenic
CCCGACAATGGATTTGTAGG+TGG 0.641838 1_2:+45650320 None:intergenic
TATAGACTAAGAAGTCCAAG+AGG 0.643321 1_2:-45648842 Msa0072600:intron
TCACTAACAAAATTACAAGA+CGG 0.643632 1_2:+45646589 None:intergenic
CCTACAAATCCGTTGTCGGG+TGG 0.643713 1_2:-45650653 Msa0072600:CDS
GTAGGTGGTGGATAAATAGG+TGG 0.645462 1_2:+45650671 None:intergenic
GATGGAGATTGAGAACTGGT+AGG 0.646075 1_2:+45650122 None:intergenic
TACCTTGCTAGAATGACTAG+TGG 0.646973 1_2:+45650241 None:intergenic
TTAAGGGTCAGTGCCCACAT+TGG 0.648200 1_2:-45649098 Msa0072600:CDS
TCACACAAACGGCCAGTCAG+TGG 0.648647 1_2:-45650626 Msa0072600:CDS
CCCGACAACGGATTTGTAGG+TGG 0.651696 1_2:+45650656 None:intergenic
CCCTTCCCCTTACCACTGGG+TGG 0.654508 1_2:+45650278 None:intergenic
GTGACTTGTCTGATATGTTG+AGG 0.654751 1_2:-45649131 Msa0072600:CDS
TGCTGAAGAAACGGACAGAG+GGG 0.654920 1_2:-45648295 Msa0072600:CDS
GCTGACTAAAGATACACAGA+CGG 0.660781 1_2:-45650897 Msa0072600:CDS
AATAGCAATGACATTATGTG+AGG 0.662671 1_2:-45646625 Msa0072600:three_prime_UTR
GCGTCCACCTAGTGATAAGG+GGG 0.664476 1_2:-45650003 Msa0072600:CDS
ATCAAGTGGACCTTCACACA+AGG 0.664485 1_2:-45649712 Msa0072600:CDS
TTTGTCTCGGAGGAAATGAG+TGG 0.664898 1_2:-45651663 None:intergenic
ACAGCTGATGAAGTATGGGT+AGG 0.665045 1_2:+45650458 None:intergenic
ACAGCTGATGAAGTATGGGT+AGG 0.665045 1_2:+45650749 None:intergenic
GTCGACGGTGTATACGCCGG+TGG 0.665297 1_2:+45649774 None:intergenic
TATAGGAGAAGTGTGAGGCG+AGG 0.665947 1_2:-45648643 Msa0072600:intron
ACCCGAACAAGTGGTAAGGG+GGG 0.667715 1_2:+45648547 None:intergenic
TAGATAAACATGTCATCAGG+AGG 0.668522 1_2:-45651049 Msa0072600:CDS
AAAGATTATGAATTCGCAGG+GGG 0.672074 1_2:-45648321 Msa0072600:CDS
TGCCGTCAACTACAAGAAAG+GGG 0.675987 1_2:-45648486 Msa0072600:CDS
GGGCAACAACATCCTTAGCA+GGG 0.676632 1_2:+45648567 None:intergenic
GATGTCGACGGTGTATACGC+CGG 0.677914 1_2:+45649771 None:intergenic
TTGGGCATGGAACTAAATTG+TGG 0.681887 1_2:+45649687 None:intergenic
ATAGGTCAACTGAAAACTAG+CGG 0.685932 1_2:+45649032 None:intergenic
GGTGGCAGTGTGTATCCCGA+TGG 0.687025 1_2:+45650398 None:intergenic
GATGGAGACTGAGAACGGGT+AGG 0.689290 1_2:+45649840 None:intergenic
TTCATTATAGGAGAAGTGTG+AGG 0.694705 1_2:-45648648 Msa0072600:intron
ATTGCTGAAGAAACGGACAG+AGG 0.696753 1_2:-45648297 Msa0072600:CDS
CCTACAAATCCATTGTCGGG+TGG 0.698994 1_2:-45650317 Msa0072600:CDS
TACCTTGAGAGAATGACTAG+TGG 0.700140 1_2:+45650577 None:intergenic
AATTGTGGTACCTTGTGTGA+AGG 0.703679 1_2:+45649702 None:intergenic
GATGAAGTATGGGTAGGTGG+AGG 0.705834 1_2:+45650464 None:intergenic
AAAAGATTATGAATTCGCAG+GGG 0.706642 1_2:-45648322 Msa0072600:CDS
GCATGATGTGAATATGTAGG+TGG 0.708116 1_2:+45650365 None:intergenic
CATATCAGACAAGTCACGCG+AGG 0.709129 1_2:+45649137 None:intergenic
TTACACAAGCGGCCACCCAG+TGG 0.712688 1_2:-45650290 Msa0072600:CDS
ATGGCATTCATGATGCTGAG+GGG 0.723530 1_2:-45649578 Msa0072600:CDS
GTAGGTGTTGGATATGTCGG+CGG 0.725546 1_2:+45649744 None:intergenic
GGTGGTGCATATGTATGCGG+TGG 0.727513 1_2:+45649792 None:intergenic
GCCGGTGGTGCATATGTATG+CGG 0.731075 1_2:+45649789 None:intergenic
TGTTGGATATGTCGGCGGTG+CGG 0.734289 1_2:+45649749 None:intergenic
GGAGGTGGAACATAGGTACG+AGG 0.741556 1_2:+45650146 None:intergenic
GGAGGCGGAGCATATGTACG+AGG 0.748386 1_2:+45650773 None:intergenic
TGACTAAAGATACACAGACG+GGG 0.766798 1_2:-45650895 Msa0072600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAACATTTTATG+AGG - chr1_2:45646799-45646818 Msa0072600:intron 10.0%
!! TTATGTTATATAAAAAATAC+AGG - chr1_2:45649022-45649041 Msa0072600:CDS 10.0%
!! ATATAGAAAAATTAAGATGT+TGG - chr1_2:45647064-45647083 Msa0072600:intron 15.0%
!!! TTTTATCTTTTTTCTCATTT+TGG - chr1_2:45647093-45647112 Msa0072600:intron 15.0%
!!! TTTGTATTGATTTATTAACA+TGG - chr1_2:45648782-45648801 Msa0072600:CDS 15.0%
!!! TAGTTCTTCTTTATTTATTT+TGG - chr1_2:45649337-45649356 Msa0072600:CDS 15.0%
!!! AGTTCTTCTTTATTTATTTT+GGG - chr1_2:45649338-45649357 Msa0072600:CDS 15.0%
!! GTTTCAAAAAATTATCATTA+TGG - chr1_2:45650662-45650681 Msa0072600:CDS 15.0%
!! AAAAGAATTTAAAAAGAGAA+CGG - chr1_2:45651058-45651077 Msa0072600:intron 15.0%
!!! ATATACATGTAATGGAAATT+GGG + chr1_2:45648148-45648167 None:intergenic 20.0%
!!! ATATACAAGTAATGGAAATT+GGG + chr1_2:45648430-45648449 None:intergenic 20.0%
!! TTATTAACATGGTATTGTTA+AGG - chr1_2:45648793-45648812 Msa0072600:CDS 20.0%
!! AAATAAAGAAGAACTAGTTA+AGG + chr1_2:45649333-45649352 None:intergenic 20.0%
!! TTTGTATGGTTATTCATTAT+AGG - chr1_2:45649582-45649601 Msa0072600:CDS 20.0%
!!! TTGTCTTGTTTATGTTTTTT+TGG - chr1_2:45650170-45650189 Msa0072600:CDS 20.0%
!!! TGTTTTGAATGTTATACTTA+TGG + chr1_2:45650692-45650711 None:intergenic 20.0%
!! TTAAACAGAAATATGAACTT+AGG - chr1_2:45650805-45650824 Msa0072600:CDS 20.0%
!!! AAATGAGTTTTTTAAGTGAT+AGG - chr1_2:45650875-45650894 Msa0072600:CDS 20.0%
!!! AATGTTTTTTGTACAACTAA+AGG - chr1_2:45650939-45650958 Msa0072600:CDS 20.0%
!!! TATCTTTTTTCTCATTTTGG+TGG - chr1_2:45647096-45647115 Msa0072600:intron 25.0%
!! GATATACATGTAATGGAAAT+TGG + chr1_2:45648149-45648168 None:intergenic 25.0%
!! TTTAGTGGATATACATGTAA+TGG + chr1_2:45648156-45648175 None:intergenic 25.0%
!! GATATACAAGTAATGGAAAT+TGG + chr1_2:45648431-45648450 None:intergenic 25.0%
!!! TTGTTATTTGACTCTTTGTA+TGG - chr1_2:45649568-45649587 Msa0072600:CDS 25.0%
! AAAAAAGATTATGAATTCGC+AGG - chr1_2:45649918-45649937 Msa0072600:CDS 25.0%
! AAAAAGATTATGAATTCGCA+GGG - chr1_2:45649919-45649938 Msa0072600:CDS 25.0%
!!! TTTCAGGTTTGGTATAATTT+TGG + chr1_2:45650301-45650320 None:intergenic 25.0%
! AAATTATACCAAACCTGAAA+TGG - chr1_2:45650301-45650320 Msa0072600:CDS 25.0%
! AATTATACCAAACCTGAAAT+GGG - chr1_2:45650302-45650321 Msa0072600:CDS 25.0%
!! GTTAGTTGTGAACATTTTAA+CGG + chr1_2:45650341-45650360 None:intergenic 25.0%
! TTAAAATGTTCACAACTAAC+TGG - chr1_2:45650341-45650360 Msa0072600:CDS 25.0%
! AATGACAATAATTAGATGTC+AGG + chr1_2:45650390-45650409 None:intergenic 25.0%
! TTGAATGTTATACTTATGGA+TGG + chr1_2:45650688-45650707 None:intergenic 25.0%
!!! TAGTTTTGTTTATGTGAAGT+AGG + chr1_2:45650905-45650924 None:intergenic 25.0%
!! ATAGAAGTTTAAAGTAGCTT+TGG + chr1_2:45651008-45651027 None:intergenic 25.0%
! AACTTCTATTCTCTGATTAA+TGG - chr1_2:45651019-45651038 Msa0072600:CDS 25.0%
! TACAAAATATCGTCAAACAA+CGG + chr1_2:45651508-45651527 None:intergenic 25.0%
! TCTTCAAATTTCATTATGCT+AGG - chr1_2:45651559-45651578 Msa0072600:intron 25.0%
AAAACTCGTCGGAAAAATTT+AGG - chr1_2:45646673-45646692 Msa0072600:intron 30.0%
AAACTCGTCGGAAAAATTTA+GGG - chr1_2:45646674-45646693 Msa0072600:intron 30.0%
TGTTGGGGATGAATTTATAA+AGG + chr1_2:45646704-45646723 None:intergenic 30.0%
! AGTTGGATCTCTTATTTGAA+TGG - chr1_2:45646977-45646996 Msa0072600:intron 30.0%
! GTTGGATCTCTTATTTGAAT+GGG - chr1_2:45646978-45646997 Msa0072600:intron 30.0%
! TTGGATCTCTTATTTGAATG+GGG - chr1_2:45646979-45646998 Msa0072600:intron 30.0%
CAATAGATAAACATGTCATC+AGG - chr1_2:45647190-45647209 Msa0072600:intron 30.0%
TATGCATGATGTGAATATGT+AGG + chr1_2:45647883-45647902 None:intergenic 30.0%
!!! TCACTTGATAGTGGATATTT+TGG + chr1_2:45648207-45648226 None:intergenic 30.0%
! ATAGGTATAAACTGGTCTAA+AGG + chr1_2:45648327-45648346 None:intergenic 30.0%
TTAGGATGACTAGACTTTAA+TGG + chr1_2:45648609-45648628 None:intergenic 30.0%
TTATTCAACCTTCCACTAAA+GGG - chr1_2:45648715-45648734 Msa0072600:intron 30.0%
! TTACCTGATTCTTTCTAGAA+TGG + chr1_2:45649494-45649513 None:intergenic 30.0%
CAAAGGAATATTAAGACTCA+TGG + chr1_2:45649782-45649801 None:intergenic 30.0%
CATGAGTCTTAATATTCCTT+TGG - chr1_2:45649780-45649799 Msa0072600:CDS 30.0%
AAAAGATTATGAATTCGCAG+GGG - chr1_2:45649920-45649939 Msa0072600:CDS 30.0%
!! TTATGCCATCATTTTTCAGA+TGG + chr1_2:45650251-45650270 None:intergenic 30.0%
ATTATACCAAACCTGAAATG+GGG - chr1_2:45650303-45650322 Msa0072600:CDS 30.0%
AATGTCAATACTATCACTTC+TGG - chr1_2:45650472-45650491 Msa0072600:CDS 30.0%
! AGGTTTAAAATATCCCTTTC+TGG + chr1_2:45650536-45650555 None:intergenic 30.0%
! ATTAACTGACCTCTTTTCAA+AGG + chr1_2:45650564-45650583 None:intergenic 30.0%
AGTGACAAAACTGCATTATT+TGG - chr1_2:45650741-45650760 Msa0072600:CDS 30.0%
TGTACAACTAAAGGATGATA+AGG - chr1_2:45650948-45650967 Msa0072600:CDS 30.0%
!! AGAATGAGTTTGCTGAATAA+TGG - chr1_2:45651118-45651137 Msa0072600:intron 30.0%
TAGACTTGTAGTAAATGCAA+AGG + chr1_2:45651173-45651192 None:intergenic 30.0%
! GAATAACAAGACTTTTGCTT+TGG + chr1_2:45651263-45651282 None:intergenic 30.0%
! CATGAAAGCATGATTAGAAT+CGG + chr1_2:45651285-45651304 None:intergenic 30.0%
ATGCTTTCATGTATTCTTCT+TGG - chr1_2:45651294-45651313 Msa0072600:intron 30.0%
ATACTAACCTACTTTGTGTA+GGG + chr1_2:45651411-45651430 None:intergenic 30.0%
AATACTAACCTACTTTGTGT+AGG + chr1_2:45651412-45651431 None:intergenic 30.0%
CTACTATGTTATAGTGCTAT+AGG - chr1_2:45651471-45651490 Msa0072600:intron 30.0%
! TAGGTTTTTGCAAACATGAA+GGG - chr1_2:45651578-45651597 Msa0072600:CDS 30.0%
TCACATAATGTCATTGCTAT+TGG + chr1_2:45651618-45651637 None:intergenic 30.0%
AATAGCAATGACATTATGTG+AGG - chr1_2:45651617-45651636 Msa0072600:CDS 30.0%
TGAGAGAGAGGAAGAAAAAA+CGG + chr1_2:45646727-45646746 None:intergenic 35.0%
TAGTACTAACCAGTGAATGA+CGG + chr1_2:45646775-45646794 None:intergenic 35.0%
GAAGTTCATATGTCTCAATG+TGG - chr1_2:45646876-45646895 Msa0072600:intron 35.0%
! AGTTGACAGTACTAGGTTTT+GGG + chr1_2:45647008-45647027 None:intergenic 35.0%
TAGATAAACATGTCATCAGG+AGG - chr1_2:45647193-45647212 Msa0072600:intron 35.0%
ACATCTTTCCCCTTATCATT+GGG + chr1_2:45647229-45647248 None:intergenic 35.0%
AACATCTTTCCCCTTATCAT+TGG + chr1_2:45647230-45647249 None:intergenic 35.0%
ATACACAGCTGATGAAGTAT+GGG + chr1_2:45647500-45647519 None:intergenic 35.0%
! TATCCTGATGGTGTATGTTT+CGG + chr1_2:45647544-45647563 None:intergenic 35.0%
!! TTTGTAGGTGGTGGATAAAT+AGG + chr1_2:45647577-45647596 None:intergenic 35.0%
TGAGCATATGTATGAGAAGA+TGG + chr1_2:45647757-45647776 None:intergenic 35.0%
ATACACAGCTGATGAAGTAT+GGG + chr1_2:45647500-45647519 None:intergenic 35.0%
!! TATGTAGGTGGTGGATAAAT+AGG + chr1_2:45647868-45647887 None:intergenic 35.0%
! TGTAATGGAAATTGGGTAGA+TGG + chr1_2:45648141-45648160 None:intergenic 35.0%
TTTGAAGGTTCACTTGATAG+TGG + chr1_2:45648216-45648235 None:intergenic 35.0%
AAAGTAACTCGAGTAGTTTC+TGG - chr1_2:45648297-45648316 Msa0072600:CDS 35.0%
! AGTAATGGAAATTGGGTAGA+TGG + chr1_2:45648423-45648442 None:intergenic 35.0%
!! TATGTAGGTGTTGGATATGT+CGG + chr1_2:45648504-45648523 None:intergenic 35.0%
GGGATTAACATGTTTGATGA+TGG - chr1_2:45648684-45648703 Msa0072600:intron 35.0%
GTTATTCAACCTTCCACTAA+AGG - chr1_2:45648714-45648733 Msa0072600:intron 35.0%
! TGTCTGTGGCTTTTTATGTT+GGG + chr1_2:45648868-45648887 None:intergenic 35.0%
! TTGTCTGTGGCTTTTTATGT+TGG + chr1_2:45648869-45648888 None:intergenic 35.0%
AAAAGCCACAGACAAAATGT+AGG - chr1_2:45648874-45648893 Msa0072600:intron 35.0%
AAAGCCACAGACAAAATGTA+GGG - chr1_2:45648875-45648894 Msa0072600:intron 35.0%
! TGACCTAAATGATGACGATA+GGG - chr1_2:45648902-45648921 Msa0072600:intron 35.0%
CGATAGGGCAAAAAAATTCA+AGG - chr1_2:45648917-45648936 Msa0072600:intron 35.0%
! AAATACAGGAGAAGTGTACA+TGG - chr1_2:45649036-45649055 Msa0072600:CDS 35.0%
! TGACTTGTCTGATATGTTGA+GGG - chr1_2:45649112-45649131 Msa0072600:CDS 35.0%
GACTGTATGGCAAAGTTTAT+TGG - chr1_2:45649175-45649194 Msa0072600:CDS 35.0%
ATAGGTCAACTGAAAACTAG+CGG + chr1_2:45649213-45649232 None:intergenic 35.0%
!!! GTTTCTCTTTTTTCTGGCAT+AGG + chr1_2:45649231-45649250 None:intergenic 35.0%
TGCCAGAAAAAAGAGAAACA+TGG - chr1_2:45649232-45649251 Msa0072600:intron 35.0%
!!! TGCCATGTTTCTCTTTTTTC+TGG + chr1_2:45649237-45649256 None:intergenic 35.0%
AGAAACATGGCATCAAAGAA+AGG - chr1_2:45649245-45649264 Msa0072600:intron 35.0%
GAAACATGGCATCAAAGAAA+GGG - chr1_2:45649246-45649265 Msa0072600:intron 35.0%
AAACATGGCATCAAAGAAAG+GGG - chr1_2:45649247-45649266 Msa0072600:intron 35.0%
TATAGACTAAGAAGTCCAAG+AGG - chr1_2:45649400-45649419 Msa0072600:CDS 35.0%
TAAGGATACTCAGATCATGA+AGG - chr1_2:45649446-45649465 Msa0072600:intron 35.0%
! TGACCATTCTAGAAAGAATC+AGG - chr1_2:45649488-45649507 Msa0072600:intron 35.0%
! TTCATTATAGGAGAAGTGTG+AGG - chr1_2:45649594-45649613 Msa0072600:CDS 35.0%
TGTAGAACCTCAACCAAATT+GGG + chr1_2:45649850-45649869 None:intergenic 35.0%
TTGTAGAACCTCAACCAAAT+TGG + chr1_2:45649851-45649870 None:intergenic 35.0%
AAGATCCTGTTCGAAAACTA+CGG - chr1_2:45649890-45649909 Msa0072600:CDS 35.0%
AAAGATTATGAATTCGCAGG+GGG - chr1_2:45649921-45649940 Msa0072600:CDS 35.0%
ACGTCTGCAAAAAATGAAAG+AGG - chr1_2:45649987-45650006 Msa0072600:CDS 35.0%
AAATTATTCGCTCAAGACCA+TGG - chr1_2:45650039-45650058 Msa0072600:CDS 35.0%
AAAGTAGACTCATGATCAGA+GGG + chr1_2:45650084-45650103 None:intergenic 35.0%
!! ATCATTTTTCAGATGGAAGG+GGG + chr1_2:45650244-45650263 None:intergenic 35.0%
!! CATCATTTTTCAGATGGAAG+GGG + chr1_2:45650245-45650264 None:intergenic 35.0%
!! CCATCATTTTTCAGATGGAA+GGG + chr1_2:45650246-45650265 None:intergenic 35.0%
TTATACCAAACCTGAAATGG+GGG - chr1_2:45650304-45650323 Msa0072600:CDS 35.0%
!! CTCAACTCTAAAATCATCTC+AGG - chr1_2:45650428-45650447 Msa0072600:CDS 35.0%
AATCATCTCAGGTGTCAAAT+TGG - chr1_2:45650439-45650458 Msa0072600:CDS 35.0%
! CTAGGTTTTTGCAAACATGA+AGG - chr1_2:45651577-45651596 Msa0072600:CDS 35.0%
!! GGCATTTTCATTTTTGCGAG+GGG + chr1_2:45646639-45646658 None:intergenic 40.0%
!! GGGCATTTTCATTTTTGCGA+GGG + chr1_2:45646640-45646659 None:intergenic 40.0%
GCAAAAATGAAAATGCCCCT+CGG - chr1_2:45646642-45646661 Msa0072600:three_prime_UTR 40.0%
! AGGAAGAAAAAACGGTGTTG+GGG + chr1_2:45646719-45646738 None:intergenic 40.0%
GAGGAAGAAAAAACGGTGTT+GGG + chr1_2:45646720-45646739 None:intergenic 40.0%
AGAGGAAGAAAAAACGGTGT+TGG + chr1_2:45646721-45646740 None:intergenic 40.0%
GTAACTTGAGACAAGCTCAT+GGG + chr1_2:45646951-45646970 None:intergenic 40.0%
TCTCAAGTTACGAAGACAGT+TGG - chr1_2:45646960-45646979 Msa0072600:intron 40.0%
! CAGTTGACAGTACTAGGTTT+TGG + chr1_2:45647009-45647028 None:intergenic 40.0%
GATAGACAGTTGACAGTACT+AGG + chr1_2:45647015-45647034 None:intergenic 40.0%
AACTAACCCACCCAATGATA+AGG - chr1_2:45647216-45647235 Msa0072600:intron 40.0%
ACTAACCCACCCAATGATAA+GGG - chr1_2:45647217-45647236 Msa0072600:intron 40.0%
AACAGTAGGTCTAGTAGTAG+TGG + chr1_2:45647257-45647276 None:intergenic 40.0%
! AGCTGGTCTAAAACATGTTG+AGG + chr1_2:45647313-45647332 None:intergenic 40.0%
GTCTGTGTATCTTTAGTCAG+CGG + chr1_2:45647346-45647365 None:intergenic 40.0%
GCTGACTAAAGATACACAGA+CGG - chr1_2:45647345-45647364 Msa0072600:intron 40.0%
CTGACTAAAGATACACAGAC+GGG - chr1_2:45647346-45647365 Msa0072600:intron 40.0%
TGACTAAAGATACACAGACG+GGG - chr1_2:45647347-45647366 Msa0072600:intron 40.0%
ATGTTGCATCCACTACTACT+AGG - chr1_2:45647245-45647264 Msa0072600:intron 40.0%
GATACACAGCTGATGAAGTA+TGG + chr1_2:45647501-45647520 None:intergenic 40.0%
TACCACTAGTCATTCTCTCA+AGG - chr1_2:45647663-45647682 Msa0072600:intron 40.0%
TACCTTGAGAGAATGACTAG+TGG + chr1_2:45647668-45647687 None:intergenic 40.0%
ATCTGTGTATGTGCAGTTGT+CGG + chr1_2:45647733-45647752 None:intergenic 40.0%
GATACACAGCTGATGAAGTA+TGG + chr1_2:45647501-45647520 None:intergenic 40.0%
TATCCCGATGGTGTAAGTTT+CGG + chr1_2:45647835-45647854 None:intergenic 40.0%
TGATGTGAATATGTAGGTGG+TGG + chr1_2:45647877-45647896 None:intergenic 40.0%
GCATGATGTGAATATGTAGG+TGG + chr1_2:45647880-45647899 None:intergenic 40.0%
ACATCATGCATATGCTCCAT+CGG - chr1_2:45647891-45647910 Msa0072600:intron 40.0%
ACCACCTACAAATCCATTGT+CGG - chr1_2:45647921-45647940 Msa0072600:intron 40.0%
GCTAGAATGACTAGTGGTAA+TGG + chr1_2:45647998-45648017 None:intergenic 40.0%
TACCACTAGTCATTCTAGCA+AGG - chr1_2:45647999-45648018 Msa0072600:intron 40.0%
TACCTTGCTAGAATGACTAG+TGG + chr1_2:45648004-45648023 None:intergenic 40.0%
GATATCGCATCCACTACTAA+TGG - chr1_2:45648264-45648283 Msa0072600:CDS 40.0%
TCATCGGCATAGGTATAAAC+TGG + chr1_2:45648335-45648354 None:intergenic 40.0%
GTTTGTGTATGTGCAGTCAT+CGG + chr1_2:45648351-45648370 None:intergenic 40.0%
TGAGTATAGGTATGAGGAGA+TGG + chr1_2:45648375-45648394 None:intergenic 40.0%
TGCGGTGGATATACAAGTAA+TGG + chr1_2:45648438-45648457 None:intergenic 40.0%
!! GATAGTGGATATGTAGGTGT+TGG + chr1_2:45648513-45648532 None:intergenic 40.0%
!! CCACTTGATAGTGGATATGT+AGG + chr1_2:45648519-45648538 None:intergenic 40.0%
CCTACATATCCACTATCAAG+TGG - chr1_2:45648516-45648535 Msa0072600:CDS 40.0%
AATTGTGGTACCTTGTGTGA+AGG + chr1_2:45648543-45648562 None:intergenic 40.0%
TTGGGCATGGAACTAAATTG+TGG + chr1_2:45648558-45648577 None:intergenic 40.0%
CTTGTGTTCCTTGAAATCCT+GGG + chr1_2:45648581-45648600 None:intergenic 40.0%
TTCACAGACTTACCCTTTAG+TGG + chr1_2:45648730-45648749 None:intergenic 40.0%
! GCTGAAATGCTTTTCGTCTT+CGG + chr1_2:45648834-45648853 None:intergenic 40.0%
! GTGACCTAAATGATGACGAT+AGG - chr1_2:45648901-45648920 Msa0072600:intron 40.0%
TTGCCCTATCGTCATCATTT+AGG + chr1_2:45648908-45648927 None:intergenic 40.0%
! GTGACTTGTCTGATATGTTG+AGG - chr1_2:45649111-45649130 Msa0072600:CDS 40.0%
TTGAGGGAAGTTCGTCTTAA+GGG - chr1_2:45649128-45649147 Msa0072600:CDS 40.0%
GGCAAAGTTTATTGGAGCAT+TGG - chr1_2:45649183-45649202 Msa0072600:CDS 40.0%
TGATGGAACCTCTTTCTTGT+AGG + chr1_2:45649277-45649296 None:intergenic 40.0%
AACGCAACACGTAACTCAAA+TGG - chr1_2:45649301-45649320 Msa0072600:intron 40.0%
AAGAGGAGTTCAAACGTGAA+CGG - chr1_2:45649417-45649436 Msa0072600:CDS 40.0%
ACTCAGATCATGAAGGAAAC+TGG - chr1_2:45649453-45649472 Msa0072600:intron 40.0%
TATGAGTTGTAACCCTGCTA+AGG - chr1_2:45649663-45649682 Msa0072600:CDS 40.0%
GTGTAGTTGGAGGTAAGAAA+AGG - chr1_2:45649716-45649735 Msa0072600:CDS 40.0%
ATGCCGTCAACTACAAGAAA+GGG - chr1_2:45649755-45649774 Msa0072600:CDS 40.0%
GATGCTCTTGCATTATCCAA+AGG + chr1_2:45649799-45649818 None:intergenic 40.0%
! AGTTTCCGTAGTTTTCGAAC+AGG + chr1_2:45649898-45649917 None:intergenic 40.0%
CAAAGTAGACTCATGATCAG+AGG + chr1_2:45650085-45650104 None:intergenic 40.0%
CTCTGATCATGAGTCTACTT+TGG - chr1_2:45650083-45650102 Msa0072600:CDS 40.0%
TGATCATGAGTCTACTTTGG+TGG - chr1_2:45650086-45650105 Msa0072600:CDS 40.0%
GATCATGAGTCTACTTTGGT+GGG - chr1_2:45650087-45650106 Msa0072600:CDS 40.0%
! GAAGCACCATCATTCATCAT+CGG + chr1_2:45650136-45650155 None:intergenic 40.0%
!! TCATTTTTCAGATGGAAGGG+GGG + chr1_2:45650243-45650262 None:intergenic 40.0%
CCCTTCCATCTGAAAAATGA+TGG - chr1_2:45650243-45650262 Msa0072600:CDS 40.0%
!! GCCATCATTTTTCAGATGGA+AGG + chr1_2:45650247-45650266 None:intergenic 40.0%
TCAACTGCACTTTACCAGAA+AGG - chr1_2:45650519-45650538 Msa0072600:CDS 40.0%
CAACTGCACTTTACCAGAAA+GGG - chr1_2:45650520-45650539 Msa0072600:CDS 40.0%
! ACCTCGATTCCTTTGAAAAG+AGG - chr1_2:45650552-45650571 Msa0072600:CDS 40.0%
! ACCTCTTTTCAAAGGAATCG+AGG + chr1_2:45650556-45650575 None:intergenic 40.0%
GTGTAGGGTCTGTAAGTTTA+GGG + chr1_2:45651396-45651415 None:intergenic 40.0%
TGTGTAGGGTCTGTAAGTTT+AGG + chr1_2:45651397-45651416 None:intergenic 40.0%
TTACAGACCCTACACAAAGT+AGG - chr1_2:45651401-45651420 Msa0072600:intron 40.0%
! GTTTTTGCAAACATGAAGGG+TGG - chr1_2:45651581-45651600 Msa0072600:CDS 40.0%
!! GGGGCATTTTCATTTTTGCG+AGG + chr1_2:45646641-45646660 None:intergenic 45.0%
! GAGTTTTTCACAGTTCCGAG+GGG + chr1_2:45646660-45646679 None:intergenic 45.0%
! CGAGTTTTTCACAGTTCCGA+GGG + chr1_2:45646661-45646680 None:intergenic 45.0%
! ACGAGTTTTTCACAGTTCCG+AGG + chr1_2:45646662-45646681 None:intergenic 45.0%
CGGAACTGTGAAAAACTCGT+CGG - chr1_2:45646662-45646681 Msa0072600:three_prime_UTR 45.0%
GGGAGTGAAAAATGAGAGAG+AGG + chr1_2:45646739-45646758 None:intergenic 45.0%
AATGACGGCTACTGGAAGAA+GGG + chr1_2:45646760-45646779 None:intergenic 45.0%
CGTAACTTGAGACAAGCTCA+TGG + chr1_2:45646952-45646971 None:intergenic 45.0%
CTAACCCACCCAATGATAAG+GGG - chr1_2:45647218-45647237 Msa0072600:intron 45.0%
CTTTCCCCTTATCATTGGGT+GGG + chr1_2:45647225-45647244 None:intergenic 45.0%
TCTTTCCCCTTATCATTGGG+TGG + chr1_2:45647226-45647245 None:intergenic 45.0%
GTATCTTTAGTCAGCGGCAT+AGG + chr1_2:45647340-45647359 None:intergenic 45.0%
ACAGCTGATGAAGTATGGGT+AGG + chr1_2:45647496-45647515 None:intergenic 45.0%
TGTATGTTTCGGTGGTGCAT+AGG + chr1_2:45647533-45647552 None:intergenic 45.0%
!! GTAGGTGGTGGATAAATAGG+TGG + chr1_2:45647574-45647593 None:intergenic 45.0%
ACCACCTACAAATCCGTTGT+CGG - chr1_2:45647585-45647604 Msa0072600:intron 45.0%
GAGAGAATGACTAGTGGTAG+TGG + chr1_2:45647662-45647681 None:intergenic 45.0%
TTGTCGGTGCAGCTATACAT+TGG + chr1_2:45647717-45647736 None:intergenic 45.0%
ACAGCTGATGAAGTATGGGT+AGG + chr1_2:45647496-45647515 None:intergenic 45.0%
ACCACCGAAACTTACACCAT+CGG - chr1_2:45647828-45647847 Msa0072600:intron 45.0%
!! GTAGGTGGTGGATAAATAGG+TGG + chr1_2:45647574-45647593 None:intergenic 45.0%
! GACAATGGATTTGTAGGTGG+TGG + chr1_2:45647922-45647941 None:intergenic 45.0%
CCACCTACAAATCCATTGTC+GGG - chr1_2:45647922-45647941 Msa0072600:intron 45.0%
CATTCTAGCAAGGTAACTCC+TGG - chr1_2:45648009-45648028 Msa0072600:intron 45.0%
TCTGGAGAACTAGAAACTCC+AGG + chr1_2:45648030-45648049 None:intergenic 45.0%
GGCACAGGTATAAATTGGTC+TGG + chr1_2:45648048-45648067 None:intergenic 45.0%
TCGTCGGCACAGGTATAAAT+TGG + chr1_2:45648053-45648072 None:intergenic 45.0%
ATCTGTGTATGTGCAGTCGT+CGG + chr1_2:45648069-45648088 None:intergenic 45.0%
GATGGAGATTGAGAACTGGT+AGG + chr1_2:45648123-45648142 None:intergenic 45.0%
GGTAGATGGAGATTGAGAAC+TGG + chr1_2:45648127-45648146 None:intergenic 45.0%
GATGGTGCATAGGCATTTAG+TGG + chr1_2:45648171-45648190 None:intergenic 45.0%
AAGCGTCCACCTAGTGATAA+GGG - chr1_2:45648237-45648256 Msa0072600:CDS 45.0%
ATATCCTCCCCCTTATCACT+AGG + chr1_2:45648249-45648268 None:intergenic 45.0%
TGTGAAGGTCCACTTGATAG+TGG + chr1_2:45648528-45648547 None:intergenic 45.0%
ATCAAGTGGACCTTCACACA+AGG - chr1_2:45648530-45648549 Msa0072600:CDS 45.0%
GTTCCTTGAAATCCTGGGTT+GGG + chr1_2:45648576-45648595 None:intergenic 45.0%
TGTTCCTTGAAATCCTGGGT+TGG + chr1_2:45648577-45648596 None:intergenic 45.0%
CCTTGTGTTCCTTGAAATCC+TGG + chr1_2:45648582-45648601 None:intergenic 45.0%
CCAGGATTTCAAGGAACACA+AGG - chr1_2:45648579-45648598 Msa0072600:CDS 45.0%
AGATGGCATTCATGATGCTG+AGG - chr1_2:45648662-45648681 Msa0072600:intron 45.0%
GATGGCATTCATGATGCTGA+GGG - chr1_2:45648663-45648682 Msa0072600:intron 45.0%
ATGGCATTCATGATGCTGAG+GGG - chr1_2:45648664-45648683 Msa0072600:intron 45.0%
CAGACTTACCCTTTAGTGGA+AGG + chr1_2:45648726-45648745 None:intergenic 45.0%
!! CTTTTCGTCTTCGGCTTTGA+AGG + chr1_2:45648825-45648844 None:intergenic 45.0%
! CCATCCCTACATTTTGTCTG+TGG + chr1_2:45648882-45648901 None:intergenic 45.0%
CCACAGACAAAATGTAGGGA+TGG - chr1_2:45648879-45648898 Msa0072600:intron 45.0%
GTTGAGGGAAGTTCGTCTTA+AGG - chr1_2:45649127-45649146 Msa0072600:CDS 45.0%
ATTGGATAGGCGAGACTGTA+TGG - chr1_2:45649162-45649181 Msa0072600:CDS 45.0%
TACGTGTTGCGTTGTGTTGA+TGG + chr1_2:45649294-45649313 None:intergenic 45.0%
GTTCACGTTTGAACTCCTCT+TGG + chr1_2:45649418-45649437 None:intergenic 45.0%
AGAGGAGTTCAAACGTGAAC+GGG - chr1_2:45649418-45649437 Msa0072600:CDS 45.0%
! AAACGTGAACGGGCTTCATA+AGG - chr1_2:45649428-45649447 Msa0072600:CDS 45.0%
GCAGGGTTACAACTCATAGA+TGG + chr1_2:45649661-45649680 None:intergenic 45.0%
TACACCCGAACAAGTGGTAA+GGG + chr1_2:45649701-45649720 None:intergenic 45.0%
GATGCCGTCAACTACAAGAA+AGG - chr1_2:45649754-45649773 Msa0072600:CDS 45.0%
TGCCGTCAACTACAAGAAAG+GGG - chr1_2:45649756-45649775 Msa0072600:CDS 45.0%
! ATCGTTAGCCTGTAGTGGTA+GGG - chr1_2:45649816-45649835 Msa0072600:CDS 45.0%
! TAGGGAGTTGGTTCCCAATT+TGG - chr1_2:45649834-45649853 Msa0072600:CDS 45.0%
! GTTGGTTCCCAATTTGGTTG+AGG - chr1_2:45649840-45649859 Msa0072600:CDS 45.0%
AGGGGGAATTGCTGAAGAAA+CGG - chr1_2:45649938-45649957 Msa0072600:CDS 45.0%
ATTGCTGAAGAAACGGACAG+AGG - chr1_2:45649945-45649964 Msa0072600:CDS 45.0%
TTGCTGAAGAAACGGACAGA+GGG - chr1_2:45649946-45649965 Msa0072600:CDS 45.0%
TAGACTCATGATCAGAGGGT+TGG + chr1_2:45650080-45650099 None:intergenic 45.0%
GGCAATCAAGACGTTGATGT+TGG - chr1_2:45650108-45650127 Msa0072600:CDS 45.0%
!! TTGGTGCCGATGATGAATGA+TGG - chr1_2:45650127-45650146 Msa0072600:CDS 45.0%
ATCTCAGGTGTCAAATTGGC+AGG - chr1_2:45650443-45650462 Msa0072600:CDS 45.0%
! TCGTCAAACAACGGCTTTTG+CGG + chr1_2:45651499-45651518 None:intergenic 45.0%
!! TATATAACATAAAATATAAT+AGG + chr1_2:45649014-45649033 None:intergenic 5.0%
ATGACGGCTACTGGAAGAAG+GGG + chr1_2:45646759-45646778 None:intergenic 50.0%
GAATGACGGCTACTGGAAGA+AGG + chr1_2:45646761-45646780 None:intergenic 50.0%
TTCCAGTAGCCGTCATTCAC+TGG - chr1_2:45646763-45646782 Msa0072600:intron 50.0%
AACCAGTGAATGACGGCTAC+TGG + chr1_2:45646768-45646787 None:intergenic 50.0%
ACTCGAATTTCCTCGCGAGT+AGG + chr1_2:45647400-45647419 None:intergenic 50.0%
GTCTGTGTATGTGCAGTCGT+GGG + chr1_2:45647442-45647461 None:intergenic 50.0%
AGTCTGTGTATGTGCAGTCG+TGG + chr1_2:45647443-45647462 None:intergenic 50.0%
GGAGCATATGTACGAGGAGA+TGG + chr1_2:45647466-45647485 None:intergenic 50.0%
GATGAAGTATGGGTAGGTGG+AGG + chr1_2:45647490-45647509 None:intergenic 50.0%
GCTGATGAAGTATGGGTAGG+TGG + chr1_2:45647493-45647512 None:intergenic 50.0%
! CCTGATGGTGTATGTTTCGG+TGG + chr1_2:45647541-45647560 None:intergenic 50.0%
CCACCGAAACATACACCATC+AGG - chr1_2:45647538-45647557 Msa0072600:intron 50.0%
GGTGGTTGTGTGTATCCTGA+TGG + chr1_2:45647556-45647575 None:intergenic 50.0%
! GACAACGGATTTGTAGGTGG+TGG + chr1_2:45647586-45647605 None:intergenic 50.0%
CCACCTACAAATCCGTTGTC+GGG - chr1_2:45647586-45647605 Msa0072600:intron 50.0%
TGTGAAAGTCCACCCGACAA+CGG + chr1_2:45647601-45647620 None:intergenic 50.0%
! CGGGTGGACTTTCACACAAA+CGG - chr1_2:45647605-45647624 Msa0072600:intron 50.0%
AAACGGCCAGTCAGTGGTAA+GGG - chr1_2:45647622-45647641 Msa0072600:intron 50.0%
GATGAAGTATGGGTAGGTGG+AGG + chr1_2:45647490-45647509 None:intergenic 50.0%
GCTGATGAAGTATGGGTAGG+TGG + chr1_2:45647493-45647512 None:intergenic 50.0%
GGTGGTGCATATGCATGTTG+TGG + chr1_2:45647814-45647833 None:intergenic 50.0%
CCACCGAAACTTACACCATC+GGG - chr1_2:45647829-45647848 Msa0072600:intron 50.0%
! CCCGACAATGGATTTGTAGG+TGG + chr1_2:45647925-45647944 None:intergenic 50.0%
! CCACCCGACAATGGATTTGT+AGG + chr1_2:45647928-45647947 None:intergenic 50.0%
CCTACAAATCCATTGTCGGG+TGG - chr1_2:45647925-45647944 Msa0072600:intron 50.0%
TGTAAAGGTCCACCCGACAA+TGG + chr1_2:45647937-45647956 None:intergenic 50.0%
GGAACATAGGTACGAGGAGA+TGG + chr1_2:45648093-45648112 None:intergenic 50.0%
GATTGAGAACTGGTAGGTGG+AGG + chr1_2:45648117-45648136 None:intergenic 50.0%
GGAGATTGAGAACTGGTAGG+TGG + chr1_2:45648120-45648139 None:intergenic 50.0%
TGCGTATGTCGATGGTGCAT+AGG + chr1_2:45648181-45648200 None:intergenic 50.0%
TTTGGCAGTGCGTATGTCGA+TGG + chr1_2:45648189-45648208 None:intergenic 50.0%
CTAGGTGGACGCTTCTTTGA+AGG + chr1_2:45648231-45648250 None:intergenic 50.0%
! GAAGCGTCCACCTAGTGATA+AGG - chr1_2:45648236-45648255 Msa0072600:CDS 50.0%
AGCGTCCACCTAGTGATAAG+GGG - chr1_2:45648238-45648257 Msa0072600:CDS 50.0%
GCGAGAACGACCATTAGTAG+TGG + chr1_2:45648277-45648296 None:intergenic 50.0%
GTATGTGCAGTCATCGGCAT+AGG + chr1_2:45648345-45648364 None:intergenic 50.0%
GGAGGCTGAGTATAGGTATG+AGG + chr1_2:45648381-45648400 None:intergenic 50.0%
GGTAGATGGAGACTGAGAAC+GGG + chr1_2:45648409-45648428 None:intergenic 50.0%
GGGTAGATGGAGACTGAGAA+CGG + chr1_2:45648410-45648429 None:intergenic 50.0%
ACCGCATACATATGCACCAC+CGG - chr1_2:45648452-45648471 Msa0072600:CDS 50.0%
!! GTAGGTGTTGGATATGTCGG+CGG + chr1_2:45648501-45648520 None:intergenic 50.0%
! TTTAGTTCCATGCCCAACCC+AGG - chr1_2:45648561-45648580 Msa0072600:CDS 50.0%
! TTGAAATCCTGGGTTGGGCA+TGG + chr1_2:45648571-45648590 None:intergenic 50.0%
ATGCCCAACCCAGGATTTCA+AGG - chr1_2:45648570-45648589 Msa0072600:CDS 50.0%
TCTTGACCAGCCTGATAAGG+CGG + chr1_2:45648645-45648664 None:intergenic 50.0%
CCATCTTGACCAGCCTGATA+AGG + chr1_2:45648648-45648667 None:intergenic 50.0%
! CCTTATCAGGCTGGTCAAGA+TGG - chr1_2:45648645-45648664 Msa0072600:intron 50.0%
CATATCAGACAAGTCACGCG+AGG + chr1_2:45649108-45649127 None:intergenic 50.0%
TTAAGGGTCAGTGCCCACAT+TGG - chr1_2:45649144-45649163 Msa0072600:CDS 50.0%
CAGTCTCGCCTATCCAATGT+GGG + chr1_2:45649160-45649179 None:intergenic 50.0%
ACAGTCTCGCCTATCCAATG+TGG + chr1_2:45649161-45649180 None:intergenic 50.0%
GGGGAAAGCCTACAAGAAAG+AGG - chr1_2:45649266-45649285 Msa0072600:intron 50.0%
! TATAGGAGAAGTGTGAGGCG+AGG - chr1_2:45649599-45649618 Msa0072600:CDS 50.0%
GGGCAACAACATCCTTAGCA+GGG + chr1_2:45649678-45649697 None:intergenic 50.0%
ACACCCGAACAAGTGGTAAG+GGG + chr1_2:45649700-45649719 None:intergenic 50.0%
CTACACCCGAACAAGTGGTA+AGG + chr1_2:45649702-45649721 None:intergenic 50.0%
ACCACTTGTTCGGGTGTAGT+TGG - chr1_2:45649703-45649722 Msa0072600:CDS 50.0%
TCCAACTACACCCGAACAAG+TGG + chr1_2:45649707-45649726 None:intergenic 50.0%
ACTTGTTCGGGTGTAGTTGG+AGG - chr1_2:45649706-45649725 Msa0072600:CDS 50.0%
GGCCCCTTTCTTGTAGTTGA+CGG + chr1_2:45649761-45649780 None:intergenic 50.0%
!! AGAGCATCGTTAGCCTGTAG+TGG - chr1_2:45649811-45649830 Msa0072600:CDS 50.0%
! CATCGTTAGCCTGTAGTGGT+AGG - chr1_2:45649815-45649834 Msa0072600:CDS 50.0%
AACCAACTCCCTACCACTAC+AGG + chr1_2:45649827-45649846 None:intergenic 50.0%
TGCTGAAGAAACGGACAGAG+GGG - chr1_2:45649947-45649966 Msa0072600:CDS 50.0%
ACTCATGATCAGAGGGTTGG+AGG + chr1_2:45650077-45650096 None:intergenic 50.0%
!! CTCTTCCCCCATTTCAGGTT+TGG + chr1_2:45650312-45650331 None:intergenic 50.0%
CAAACCTGAAATGGGGGAAG+AGG - chr1_2:45650310-45650329 Msa0072600:CDS 50.0%
AGATCCTCTTCCCCCATTTC+AGG + chr1_2:45650317-45650336 None:intergenic 50.0%
GTCTGATGCAGACAGTACAG+CGG + chr1_2:45650773-45650792 None:intergenic 50.0%
TGTCTGCATCAGACATACGC+TGG - chr1_2:45650779-45650798 Msa0072600:CDS 50.0%
TTGCGAGTGCGCTCAACAGT+AGG + chr1_2:45647271-45647290 None:intergenic 55.0%
TCAGCGGCATAGGTACAAGC+TGG + chr1_2:45647330-45647349 None:intergenic 55.0%
GCGAGTAGGCCTAGTAGTAG+TGG + chr1_2:45647386-45647405 None:intergenic 55.0%
TACTACTAGGCCTACTCGCG+AGG - chr1_2:45647387-45647406 Msa0072600:intron 55.0%
GTATGTGCAGTCGTGGGCAT+AGG + chr1_2:45647436-45647455 None:intergenic 55.0%
GAAGTATGGGTAGGTGGAGG+CGG + chr1_2:45647487-45647506 None:intergenic 55.0%
GGTGGTGCATAGGCATGTTG+TGG + chr1_2:45647523-45647542 None:intergenic 55.0%
! CCCGACAACGGATTTGTAGG+TGG + chr1_2:45647589-45647608 None:intergenic 55.0%
! CCACCCGACAACGGATTTGT+AGG + chr1_2:45647592-45647611 None:intergenic 55.0%
CCTACAAATCCGTTGTCGGG+TGG - chr1_2:45647589-45647608 Msa0072600:intron 55.0%
TCACACAAACGGCCAGTCAG+TGG - chr1_2:45647616-45647635 Msa0072600:intron 55.0%
CAAACGGCCAGTCAGTGGTA+AGG - chr1_2:45647621-45647640 Msa0072600:intron 55.0%
AACGGCCAGTCAGTGGTAAG+GGG - chr1_2:45647623-45647642 Msa0072600:intron 55.0%
CCAGTCAGTGGTAAGGGGAA+GGG - chr1_2:45647628-45647647 Msa0072600:intron 55.0%
! AGTGGTAAGGGGAAGGGTGT+CGG - chr1_2:45647634-45647653 Msa0072600:intron 55.0%
CCCGATGGTGTAAGTTTCGG+TGG + chr1_2:45647832-45647851 None:intergenic 55.0%
!! GTAGGTGGTGGATTCACCGA+TGG + chr1_2:45647910-45647929 None:intergenic 55.0%
CGGGTGGACCTTTACACAAG+CGG - chr1_2:45647941-45647960 Msa0072600:intron 55.0%
ACACCCTTCCCCTTACCACT+GGG + chr1_2:45647634-45647653 None:intergenic 55.0%
! AGTGGTAAGGGGAAGGGTGT+CGG - chr1_2:45647634-45647653 Msa0072600:intron 55.0%
GGAGGTGGAACATAGGTACG+AGG + chr1_2:45648099-45648118 None:intergenic 55.0%
GGTAGGTGGAGGTGGAACAT+AGG + chr1_2:45648106-45648125 None:intergenic 55.0%
TGAGAACTGGTAGGTGGAGG+TGG + chr1_2:45648114-45648133 None:intergenic 55.0%
GCGTCCACCTAGTGATAAGG+GGG - chr1_2:45648239-45648258 Msa0072600:CDS 55.0%
TCCACCTAGTGATAAGGGGG+AGG - chr1_2:45648242-45648261 Msa0072600:CDS 55.0%
TCCTCCCCCTTATCACTAGG+TGG + chr1_2:45648246-45648265 None:intergenic 55.0%
GGTAGGTGGAGGCTGAGTAT+AGG + chr1_2:45648388-45648407 None:intergenic 55.0%
GATGGAGACTGAGAACGGGT+AGG + chr1_2:45648405-45648424 None:intergenic 55.0%
GGTGGTGCATATGTATGCGG+TGG + chr1_2:45648453-45648472 None:intergenic 55.0%
GCCGGTGGTGCATATGTATG+CGG + chr1_2:45648456-45648475 None:intergenic 55.0%
GATGTCGACGGTGTATACGC+CGG + chr1_2:45648474-45648493 None:intergenic 55.0%
TGTTGGATATGTCGGCGGTG+CGG + chr1_2:45648496-45648515 None:intergenic 55.0%
TGATAAGGCGGACGCTGAGA+TGG + chr1_2:45648633-45648652 None:intergenic 55.0%
ATCTCAGCGTCCGCCTTATC+AGG - chr1_2:45648632-45648651 Msa0072600:CDS 55.0%
GGTCAGTGCCCACATTGGAT+AGG - chr1_2:45649149-45649168 Msa0072600:CDS 55.0%
GGGGCAACAACATCCTTAGC+AGG + chr1_2:45649679-45649698 None:intergenic 55.0%
TGCCCCCCTTACCACTTGTT+CGG - chr1_2:45649693-45649712 Msa0072600:CDS 55.0%
ACCCGAACAAGTGGTAAGGG+GGG + chr1_2:45649698-45649717 None:intergenic 55.0%
CACCCGAACAAGTGGTAAGG+GGG + chr1_2:45649699-45649718 None:intergenic 55.0%
AGCCTGTAGTGGTAGGGAGT+TGG - chr1_2:45649822-45649841 Msa0072600:CDS 55.0%
CATGATCAGAGGGTTGGAGG+CGG + chr1_2:45650074-45650093 None:intergenic 55.0%
CTGTTGAGCGCACTCGCAAG+TGG - chr1_2:45647272-45647291 Msa0072600:intron 60.0%
TCGCAAGTGGCGCACTCATC+TGG - chr1_2:45647285-45647304 Msa0072600:intron 60.0%
GGAGGCGGAGCATATGTACG+AGG + chr1_2:45647472-45647491 None:intergenic 60.0%
GCCAGTCAGTGGTAAGGGGA+AGG - chr1_2:45647627-45647646 Msa0072600:intron 60.0%
CCCTTCCCCTTACCACTGAC+TGG + chr1_2:45647631-45647650 None:intergenic 60.0%
GGTGGCAGTGTGTATCCCGA+TGG + chr1_2:45647847-45647866 None:intergenic 60.0%
CTGGGTGGCCGCTTGTGTAA+AGG + chr1_2:45647952-45647971 None:intergenic 60.0%
TTACACAAGCGGCCACCCAG+TGG - chr1_2:45647952-45647971 Msa0072600:intron 60.0%
AAGCGGCCACCCAGTGGTAA+GGG - chr1_2:45647958-45647977 Msa0072600:intron 60.0%
CCACCCAGTGGTAAGGGGAA+GGG - chr1_2:45647964-45647983 Msa0072600:intron 60.0%
GACACCCTTCCCCTTACCAC+TGG + chr1_2:45647635-45647654 None:intergenic 60.0%
GTATGTGCAGTCGTCGGCAC+AGG + chr1_2:45648063-45648082 None:intergenic 60.0%
GACTGAGAACGGGTAGGTGG+AGG + chr1_2:45648399-45648418 None:intergenic 60.0%
GGAGACTGAGAACGGGTAGG+TGG + chr1_2:45648402-45648421 None:intergenic 60.0%
GCCCCCCTTACCACTTGTTC+GGG - chr1_2:45649694-45649713 Msa0072600:CDS 60.0%
CAAGCGGCCACCCAGTGGTA+AGG - chr1_2:45647957-45647976 Msa0072600:intron 65.0%
AGCGGCCACCCAGTGGTAAG+GGG - chr1_2:45647959-45647978 Msa0072600:intron 65.0%
GCCACCCAGTGGTAAGGGGA+AGG - chr1_2:45647963-45647982 Msa0072600:intron 65.0%
CCCTTCCCCTTACCACTGGG+TGG + chr1_2:45647967-45647986 None:intergenic 65.0%
GTCGACGGTGTATACGCCGG+TGG + chr1_2:45648471-45648490 None:intergenic 65.0%
GGCGGACGCTGAGATGGCTT+AGG + chr1_2:45648627-45648646 None:intergenic 65.0%
CAGCGTCCGCCTTATCAGGC+TGG - chr1_2:45648636-45648655 Msa0072600:CDS 65.0%
GATCAGAGGGTTGGAGGCGG+CGG + chr1_2:45650071-45650090 None:intergenic 65.0%
GTCGGCGGTGCGGATGTCGA+CGG + chr1_2:45648486-45648505 None:intergenic 70.0%
GGAGGCGGCGGTGACGTCCA+TGG + chr1_2:45650059-45650078 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45646594 45651670 45646594 ID=Msa0072600;Name=Msa0072600
chr1_2 mRNA 45646594 45651670 45646594 ID=Msa0072600-mRNA-1;Parent=Msa0072600;Name=Msa0072600-mRNA-1;_AED=0.24;_eAED=0.11;_QI=0|0.85|0.75|1|0.57|0.5|8|201|900
chr1_2 exon 45646594 45646683 45646594 ID=Msa0072600-mRNA-1:exon:13809;Parent=Msa0072600-mRNA-1
chr1_2 exon 45647691 45647799 45647691 ID=Msa0072600-mRNA-1:exon:13808;Parent=Msa0072600-mRNA-1
chr1_2 exon 45648116 45648660 45648116 ID=Msa0072600-mRNA-1:exon:13807;Parent=Msa0072600-mRNA-1
chr1_2 exon 45648755 45648859 45648755 ID=Msa0072600-mRNA-1:exon:13806;Parent=Msa0072600-mRNA-1
chr1_2 exon 45648942 45649220 45648942 ID=Msa0072600-mRNA-1:exon:13805;Parent=Msa0072600-mRNA-1
chr1_2 exon 45649317 45649449 45649317 ID=Msa0072600-mRNA-1:exon:13804;Parent=Msa0072600-mRNA-1
chr1_2 exon 45649528 45651068 45649528 ID=Msa0072600-mRNA-1:exon:13803;Parent=Msa0072600-mRNA-1
chr1_2 exon 45651569 45651670 45651569 ID=Msa0072600-mRNA-1:exon:13802;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45651569 45651670 45651569 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45649528 45651068 45649528 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45649317 45649449 45649317 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45648942 45649220 45648942 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45648755 45648859 45648755 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 CDS 45648118 45648660 45648118 ID=Msa0072600-mRNA-1:cds;Parent=Msa0072600-mRNA-1
chr1_2 three_prime_UTR 45648116 45648117 45648116 ID=Msa0072600-mRNA-1:three_prime_utr;Parent=Msa0072600-mRNA-1
chr1_2 three_prime_UTR 45647691 45647799 45647691 ID=Msa0072600-mRNA-1:three_prime_utr;Parent=Msa0072600-mRNA-1
chr1_2 three_prime_UTR 45646594 45646683 45646594 ID=Msa0072600-mRNA-1:three_prime_utr;Parent=Msa0072600-mRNA-1
Gene Sequence

>Msa0072600

ATGAGTGGTTGGAAAGTAATGGATAATTTTGCAATTGAAATGCCCCTCGCAAAAATGAAAATGCCCCTCGGAACTGTGAAAAACTCGTCGGAAAAATTTAGGATAAACATGTCATCAGGAGGAACTAACCCACCCAATGATAAGGGGAAAGATGTTGCATCCACTACTACTAGACCTACTGTTGAGCGCACTCGCAAGTGGCGCACTCATCTGGCTCCTCAACATGTTTTAGACCAGCTTGTACCTATGCCGCTGACTAAAGATACACAGACGGGGAAAGATGTTGCATCCACTACTACTAGGCCTACTCGCGAGGAAATTCGAGTAGACAAGTCTATACCTATGCCCACGACTGCACATACACAGACTCCATCTCCTCGTACATATGCTCCGCCTCCACCTACCCATACTTCATCAGCTGTGTATCCACAACATGCCTATGCACCACCGAAACATACACCATCAGGATACACACAACCACCTATTTATCCACCACCTACAAATCCGTTGTCGGGTGGACTTTCACACAAACGGCCAGTCAGTGGTAAGGGGAAGGGTGTCGGATCCACTACCACTAGTCATTCTCTCAAGGTAAGTCGTGTAGTTTCTAGTTCTACAGACCAATGTATAGCTGCACCGACAACTGCACATACACAGATTCCATCTTCTCATACATATGCTCAGCCTCCACCTACCCATACTTCATCAGCTGTGTATCCACAACATGCATATGCACCACCGAAACTTACACCATCGGGATACACACTGCCACCTATTTATCCACCACCTACATATTCACATCATGCATATGCTCCATCGGTGAATCCACCACCTACAAATCCATTGTCGGGTGGACCTTTACACAAGCGGCCACCCAGTGGTAAGGGGAAGGGTGTCGGATCCATTACCACTAGTCATTCTAGCAAGGTAACTCCTGGAGTTTCTAGTTCTCCAGACCAATTTATACCTGTGCCGACGACTGCACATACACAGATTCCATCTCCTCGTACCTATGTTCCACCTCCACCTACCAGTTCTCAATCTCCATCTACCCAATTTCCATTACATGTATATCCACTAAATGCCTATGCACCATCGACATACGCACTGCCAAAATATCCACTATCAAGTGAACCTTCAAAGAAGCGTCCACCTAGTGATAAGGGGGAGGATATCGCATCCACTACTAATGGTCGTTCTCGCAAAGTAACTCGAGTAGTTTCTGGTTCTCCTTTAGACCAGTTTATACCTATGCCGATGACTGCACATACACAAACTCCATCTCCTCATACCTATACTCAGCCTCCACCTACCCGTTCTCAGTCTCCATCTACCCAATTTCCATTACTTGTATATCCACCGCATACATATGCACCACCGGCGTATACACCGTCGACATCCGCACCGCCGACATATCCAACACCTACATATCCACTATCAAGTGGACCTTCACACAAGGTACCACAATTTAGTTCCATGCCCAACCCAGGATTTCAAGGAACACAAGGAACTCCATTAAAGTCTAGTCATCCTAAGCCATCTCAGCGTCCGCCTTATCAGGCTGGTCAAGATGGCATTCATGATGCTGAGGGGATTAACATGTTTGATGATGGAAGACACGTTATTCAACCTTCCACTAAAGGGCTTTTGCCTTCAAAGCCGAAGACGAAAAGCATTTCAGCAAATATACAATCCCAACATAAAAAGCCACAGACAAAATGTAGGGATGGTGACCTAAATGATGACGATAGGGCAAAAAAATTCAAGGTTTTTAGTGAGAAGTGTACATGGCATGACAAGCAGAGTGATCAGATTCAGAATAACTTTCATGTGAGAGCCTCGCGTGACTTGTCTGATATGTTGAGGGAAGTTCGTCTTAAGGGTCAGTGCCCACATTGGATAGGCGAGACTGTATGGCAAAGTTTATTGGAGCATTGGAGTTCCGCTAGTTTTCAGTTGACCTATGCCAGAAAAAAGAGAAACATGGCATCAAAGAAAGGGGAAAGCCTACAAGAAAGAGGTTCCATCAACACAACGCAACACGTAACTCAAATGACTAAGAAGTCCAAGAGGAGTTCAAACGTGAACGGGCTTCATAAGGATACTCAGATCATGAAGGAAACTGGTGATTATGCAGATGACCATTCTAGAAAGAATCAGGAGAAGTGTGAGGCGAGGAAGTCTCAGACTAGATCTCAAAATAATTCAACTTCTCCATCTATGAGTTGTAACCCTGCTAAGGATGTTGTTGCCCCCCTTACCACTTGTTCGGGTGTAGTTGGAGGTAAGAAAAGGAGTCGCTTATATGATGATGCCGTCAACTACAAGAAAGGGGCCATGAGTCTTAATATTCCTTTGGATAATGCAAGAGCATCGTTAGCCTGTAGTGGTAGGGAGTTGGTTCCCAATTTGGTTGAGGTTCTACAAAGAACAGTGACTTCTAGTGAAGATCCTGTTCGAAAACTACGGAAACTAAAAAAGATTATGAATTCGCAGGGGGAATTGCTGAAGAAACGGACAGAGGGGCTAGAAGAGCTAAAAAAACGTCTGCAAAAAATGAAAGAGGAGCGAGAAGCATTTGAAGAACGTGTGCGAAAATTATTCGCTCAAGACCATGGACGTCACCGCCGCCTCCAACCCTCTGATCATGAGTCTACTTTGGTGGGCAATCAAGACGTTGATGTTGGTGCCGATGATGAATGA
Protein sequence

>Msa0072600

MSGWKVMDNFAIEMPLAKMKMPLGTVKNSSEKFRINMSSGGTNPPNDKGKDVASTTTRPTVERTRKWRTHLAPQHVLDQLVPMPLTKDTQTGKDVASTTTRPTREEIRVDKSIPMPTTAHTQTPSPRTYAPPPPTHTSSAVYPQHAYAPPKHTPSGYTQPPIYPPPTNPLSGGLSHKRPVSGKGKGVGSTTTSHSLKVSRVVSSSTDQCIAAPTTAHTQIPSSHTYAQPPPTHTSSAVYPQHAYAPPKLTPSGYTLPPIYPPPTYSHHAYAPSVNPPPTNPLSGGPLHKRPPSGKGKGVGSITTSHSSKVTPGVSSSPDQFIPVPTTAHTQIPSPRTYVPPPPTSSQSPSTQFPLHVYPLNAYAPSTYALPKYPLSSEPSKKRPPSDKGEDIASTTNGRSRKVTRVVSGSPLDQFIPMPMTAHTQTPSPHTYTQPPPTRSQSPSTQFPLLVYPPHTYAPPAYTPSTSAPPTYPTPTYPLSSGPSHKVPQFSSMPNPGFQGTQGTPLKSSHPKPSQRPPYQAGQDGIHDAEGINMFDDGRHVIQPSTKGLLPSKPKTKSISANIQSQHKKPQTKCRDGDLNDDDRAKKFKVFSEKCTWHDKQSDQIQNNFHVRASRDLSDMLREVRLKGQCPHWIGETVWQSLLEHWSSASFQLTYARKKRNMASKKGESLQERGSINTTQHVTQMTKKSKRSSNVNGLHKDTQIMKETGDYADDHSRKNQEKCEARKSQTRSQNNSTSPSMSCNPAKDVVAPLTTCSGVVGGKKRSRLYDDAVNYKKGAMSLNIPLDNARASLACSGRELVPNLVEVLQRTVTSSEDPVRKLRKLKKIMNSQGELLKKRTEGLEELKKRLQKMKEEREAFEERVRKLFAQDHGRHRRLQPSDHESTLVGNQDVDVGADDE*