Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532500 | XP_003604615.1 | 93.068 | 577 | 8 | 1 | 1 | 545 | 1 | 577 | 0.0 | 1097 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532500 | sp|Q9M390|PTR1_ARATH | 72.647 | 563 | 120 | 2 | 12 | 540 | 2 | 564 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532500 | G7JMY6 | 93.068 | 577 | 8 | 1 | 1 | 545 | 1 | 577 | 0.0 | 1097 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0221460 | Msa0532500 | 0.803186 | 3.930508e-49 | -8.615850e-47 |
Msa0244820 | Msa0532500 | 0.808139 | 3.587446e-50 | -8.615850e-47 |
Msa0300670 | Msa0532500 | 0.815842 | 7.513963e-52 | -8.615850e-47 |
Msa0337760 | Msa0532500 | 0.803989 | 2.678726e-49 | -8.615850e-47 |
Msa0532500 | Msa0629560 | 0.873426 | 1.484098e-67 | -8.615850e-47 |
Msa0532500 | Msa0629580 | 0.820546 | 6.478051e-53 | -8.615850e-47 |
Msa0532500 | Msa0667350 | 0.931630 | 2.841050e-94 | -8.615850e-47 |
Msa0532500 | Msa0878090 | 0.810100 | 1.363439e-50 | -8.615850e-47 |
Msa0532500 | Msa0943870 | 0.818043 | 2.407862e-52 | -8.615850e-47 |
Msa0532500 | Msa1109890 | -0.807392 | 5.170560e-50 | -8.615850e-47 |
Msa0532500 | Msa1376070 | -0.808252 | 3.393393e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532500 | MtrunA17_Chr4g0005901 | 93.068 | 577 | 8 | 1 | 1 | 545 | 1 | 577 | 0.0 | 1097 |
Msa0532500 | MtrunA17_Chr7g0241741 | 80.570 | 561 | 77 | 1 | 13 | 541 | 3 | 563 | 0.0 | 940 |
Msa0532500 | MtrunA17_Chr3g0104011 | 67.673 | 563 | 148 | 2 | 12 | 540 | 2 | 564 | 0.0 | 781 |
Msa0532500 | MtrunA17_Chr8g0375311 | 59.331 | 568 | 194 | 4 | 11 | 542 | 19 | 585 | 0.0 | 695 |
Msa0532500 | MtrunA17_Chr8g0375291 | 58.676 | 559 | 194 | 4 | 11 | 533 | 19 | 576 | 0.0 | 676 |
Msa0532500 | MtrunA17_Chr8g0375341 | 51.232 | 568 | 240 | 4 | 11 | 542 | 19 | 585 | 0.0 | 606 |
Msa0532500 | MtrunA17_Chr8g0375351 | 51.056 | 568 | 241 | 4 | 11 | 542 | 19 | 585 | 0.0 | 603 |
Msa0532500 | MtrunA17_Chr8g0375321 | 49.913 | 577 | 251 | 5 | 2 | 542 | 8 | 582 | 0.0 | 593 |
Msa0532500 | MtrunA17_Chr8g0375361 | 50.788 | 571 | 244 | 4 | 10 | 544 | 17 | 586 | 0.0 | 578 |
Msa0532500 | MtrunA17_Chr8g0375331 | 50.000 | 568 | 245 | 5 | 11 | 542 | 5 | 569 | 0.0 | 577 |
Msa0532500 | MtrunA17_Chr3g0142101 | 44.760 | 563 | 265 | 5 | 13 | 540 | 16 | 567 | 1.64e-167 | 487 |
Msa0532500 | MtrunA17_Chr7g0261811 | 42.580 | 566 | 278 | 4 | 12 | 538 | 9 | 566 | 7.14e-167 | 486 |
Msa0532500 | MtrunA17_Chr7g0261881 | 43.110 | 566 | 275 | 4 | 12 | 538 | 9 | 566 | 1.25e-164 | 480 |
Msa0532500 | MtrunA17_Chr5g0422881 | 44.000 | 550 | 265 | 6 | 32 | 541 | 20 | 566 | 8.90e-161 | 470 |
Msa0532500 | MtrunA17_Chr7g0261791 | 40.823 | 583 | 296 | 6 | 1 | 543 | 1 | 574 | 1.21e-160 | 470 |
Msa0532500 | MtrunA17_Chr7g0261851 | 42.606 | 568 | 281 | 3 | 13 | 541 | 9 | 570 | 1.22e-159 | 468 |
Msa0532500 | MtrunA17_Chr7g0261771 | 40.830 | 578 | 294 | 5 | 1 | 538 | 1 | 570 | 4.62e-159 | 466 |
Msa0532500 | MtrunA17_Chr7g0217461 | 44.425 | 574 | 273 | 6 | 10 | 540 | 2 | 572 | 1.27e-156 | 459 |
Msa0532500 | MtrunA17_Chr3g0142091 | 44.784 | 556 | 257 | 9 | 23 | 540 | 17 | 560 | 5.45e-155 | 455 |
Msa0532500 | MtrunA17_Chr3g0114501 | 41.844 | 564 | 288 | 5 | 12 | 540 | 4 | 562 | 1.51e-154 | 454 |
Msa0532500 | MtrunA17_Chr3g0077151 | 41.591 | 553 | 279 | 6 | 16 | 542 | 12 | 546 | 1.39e-153 | 450 |
Msa0532500 | MtrunA17_Chr1g0187241 | 41.053 | 570 | 286 | 7 | 10 | 539 | 7 | 566 | 4.45e-152 | 448 |
Msa0532500 | MtrunA17_Chr7g0255621 | 40.348 | 575 | 298 | 6 | 10 | 544 | 1 | 570 | 7.98e-152 | 448 |
Msa0532500 | MtrunA17_Chr5g0399071 | 43.627 | 557 | 270 | 6 | 24 | 539 | 17 | 570 | 9.03e-152 | 447 |
Msa0532500 | MtrunA17_Chr5g0400371 | 41.145 | 559 | 288 | 4 | 18 | 536 | 98 | 655 | 2.96e-149 | 444 |
Msa0532500 | MtrunA17_Chr4g0054891 | 41.084 | 572 | 291 | 5 | 3 | 534 | 81 | 646 | 9.85e-147 | 437 |
Msa0532500 | MtrunA17_Chr5g0399061 | 41.219 | 558 | 282 | 6 | 24 | 539 | 19 | 572 | 1.51e-146 | 434 |
Msa0532500 | MtrunA17_Chr1g0166711 | 41.889 | 561 | 282 | 5 | 17 | 539 | 10 | 564 | 2.62e-146 | 433 |
Msa0532500 | MtrunA17_Chr7g0255601 | 40.320 | 563 | 292 | 6 | 20 | 541 | 15 | 574 | 4.32e-145 | 431 |
Msa0532500 | MtrunA17_Chr1g0213711 | 39.852 | 542 | 285 | 4 | 30 | 536 | 19 | 554 | 1.34e-144 | 429 |
Msa0532500 | MtrunA17_Chr1g0166741 | 41.166 | 549 | 271 | 7 | 13 | 520 | 4 | 541 | 4.26e-143 | 425 |
Msa0532500 | MtrunA17_Chr4g0014841 | 39.318 | 557 | 293 | 7 | 13 | 540 | 10 | 550 | 1.30e-142 | 422 |
Msa0532500 | MtrunA17_Chr4g0056431 | 42.857 | 560 | 273 | 6 | 24 | 539 | 17 | 573 | 1.67e-142 | 424 |
Msa0532500 | MtrunA17_Chr7g0218851 | 39.668 | 542 | 282 | 6 | 33 | 536 | 47 | 581 | 3.73e-142 | 423 |
Msa0532500 | MtrunA17_Chr1g0166791 | 38.869 | 566 | 303 | 5 | 12 | 539 | 4 | 564 | 5.56e-141 | 420 |
Msa0532500 | MtrunA17_Chr4g0014791 | 39.388 | 556 | 290 | 6 | 13 | 538 | 10 | 548 | 5.98e-141 | 418 |
Msa0532500 | MtrunA17_Chr8g0353031 | 41.822 | 538 | 278 | 6 | 34 | 541 | 20 | 552 | 1.77e-140 | 418 |
Msa0532500 | MtrunA17_Chr4g0014801 | 38.959 | 557 | 297 | 5 | 13 | 540 | 10 | 552 | 3.96e-140 | 416 |
Msa0532500 | MtrunA17_Chr4g0014781 | 38.779 | 557 | 298 | 5 | 13 | 540 | 10 | 552 | 7.66e-140 | 416 |
Msa0532500 | MtrunA17_Chr7g0214731 | 40.244 | 574 | 287 | 9 | 17 | 539 | 44 | 612 | 9.54e-140 | 418 |
Msa0532500 | MtrunA17_Chr3g0112671 | 40.035 | 572 | 297 | 8 | 7 | 544 | 6 | 565 | 2.75e-139 | 415 |
Msa0532500 | MtrunA17_Chr4g0014871 | 39.020 | 551 | 292 | 6 | 20 | 540 | 18 | 554 | 5.25e-138 | 411 |
Msa0532500 | MtrunA17_Chr7g0214461 | 38.765 | 583 | 309 | 9 | 1 | 545 | 46 | 618 | 5.34e-138 | 413 |
Msa0532500 | MtrunA17_Chr4g0008651 | 38.502 | 574 | 313 | 7 | 4 | 543 | 6 | 573 | 5.60e-137 | 409 |
Msa0532500 | MtrunA17_Chr5g0415791 | 40.675 | 563 | 283 | 7 | 25 | 539 | 18 | 577 | 6.24e-137 | 410 |
Msa0532500 | MtrunA17_Chr7g0255611 | 35.739 | 582 | 330 | 6 | 3 | 544 | 2 | 579 | 5.82e-134 | 402 |
Msa0532500 | MtrunA17_Chr7g0240381 | 37.500 | 576 | 309 | 9 | 1 | 541 | 1 | 560 | 5.84e-133 | 399 |
Msa0532500 | MtrunA17_Chr4g0063591 | 42.207 | 571 | 276 | 10 | 12 | 540 | 2 | 560 | 1.02e-130 | 393 |
Msa0532500 | MtrunA17_Chr1g0166771 | 40.668 | 509 | 254 | 5 | 51 | 522 | 10 | 507 | 8.29e-129 | 387 |
Msa0532500 | MtrunA17_Chr3g0112611 | 38.230 | 565 | 309 | 7 | 11 | 541 | 13 | 571 | 1.41e-128 | 388 |
Msa0532500 | MtrunA17_Chr7g0261661 | 44.000 | 425 | 231 | 2 | 115 | 538 | 34 | 452 | 7.81e-127 | 380 |
Msa0532500 | MtrunA17_Chr5g0439381 | 40.348 | 575 | 281 | 9 | 6 | 539 | 3 | 556 | 1.13e-126 | 383 |
Msa0532500 | MtrunA17_Chr4g0059991 | 36.508 | 567 | 311 | 7 | 18 | 539 | 11 | 573 | 2.66e-123 | 375 |
Msa0532500 | MtrunA17_Chr3g0082631 | 44.676 | 432 | 225 | 5 | 120 | 540 | 32 | 460 | 1.59e-120 | 363 |
Msa0532500 | MtrunA17_Chr4g0011471 | 38.910 | 532 | 277 | 6 | 47 | 536 | 31 | 556 | 2.10e-120 | 366 |
Msa0532500 | MtrunA17_Chr4g0059971 | 35.688 | 552 | 300 | 7 | 38 | 540 | 40 | 585 | 5.02e-120 | 366 |
Msa0532500 | MtrunA17_Chr2g0284701 | 36.672 | 589 | 313 | 10 | 3 | 539 | 8 | 588 | 2.85e-119 | 364 |
Msa0532500 | MtrunA17_Chr7g0271221 | 36.280 | 543 | 298 | 8 | 32 | 539 | 17 | 546 | 2.70e-118 | 361 |
Msa0532500 | MtrunA17_Chr4g0014861 | 40.639 | 438 | 241 | 5 | 108 | 540 | 6 | 429 | 3.69e-116 | 350 |
Msa0532500 | MtrunA17_Chr2g0276751 | 34.609 | 575 | 316 | 8 | 3 | 539 | 11 | 563 | 1.22e-115 | 354 |
Msa0532500 | MtrunA17_Chr4g0059981 | 34.768 | 581 | 322 | 10 | 11 | 543 | 14 | 585 | 2.39e-114 | 352 |
Msa0532500 | MtrunA17_Chr1g0193391 | 36.464 | 543 | 297 | 9 | 32 | 539 | 17 | 546 | 1.57e-113 | 349 |
Msa0532500 | MtrunA17_Chr1g0166731 | 42.958 | 426 | 236 | 3 | 115 | 539 | 42 | 461 | 1.94e-113 | 345 |
Msa0532500 | MtrunA17_Chr8g0362781 | 33.217 | 575 | 338 | 5 | 13 | 542 | 11 | 584 | 1.33e-112 | 347 |
Msa0532500 | MtrunA17_Chr8g0362711 | 37.255 | 561 | 308 | 7 | 21 | 539 | 13 | 571 | 2.66e-112 | 345 |
Msa0532500 | MtrunA17_Chr3g0133341 | 36.786 | 560 | 299 | 7 | 24 | 541 | 6 | 552 | 3.71e-112 | 345 |
Msa0532500 | MtrunA17_Chr8g0362801 | 39.909 | 441 | 257 | 4 | 109 | 544 | 29 | 466 | 1.04e-110 | 338 |
Msa0532500 | MtrunA17_Chr7g0261751 | 37.302 | 504 | 232 | 7 | 1 | 428 | 1 | 496 | 3.19e-110 | 338 |
Msa0532500 | MtrunA17_Chr8g0379971 | 36.395 | 588 | 310 | 8 | 20 | 543 | 8 | 595 | 5.45e-107 | 332 |
Msa0532500 | MtrunA17_Chr4g0011041 | 33.506 | 579 | 331 | 9 | 5 | 536 | 7 | 578 | 9.97e-107 | 331 |
Msa0532500 | MtrunA17_Chr5g0415961 | 34.636 | 563 | 323 | 7 | 20 | 539 | 12 | 572 | 2.36e-106 | 330 |
Msa0532500 | MtrunA17_Chr1g0147631 | 34.828 | 580 | 318 | 9 | 1 | 536 | 1 | 564 | 2.73e-102 | 320 |
Msa0532500 | MtrunA17_Chr4g0069581 | 41.355 | 428 | 234 | 8 | 117 | 539 | 102 | 517 | 2.01e-101 | 317 |
Msa0532500 | MtrunA17_Chr8g0390331 | 35.818 | 550 | 297 | 10 | 32 | 536 | 15 | 553 | 4.44e-101 | 317 |
Msa0532500 | MtrunA17_Chr6g0451841 | 35.478 | 544 | 287 | 9 | 40 | 539 | 13 | 536 | 5.95e-100 | 312 |
Msa0532500 | MtrunA17_Chr4g0060001 | 34.296 | 554 | 316 | 8 | 25 | 536 | 22 | 569 | 3.61e-99 | 312 |
Msa0532500 | MtrunA17_Chr8g0379991 | 35.993 | 564 | 284 | 7 | 53 | 539 | 1 | 564 | 4.62e-98 | 308 |
Msa0532500 | MtrunA17_Chr7g0240271 | 31.763 | 573 | 346 | 7 | 11 | 541 | 3 | 572 | 1.69e-97 | 307 |
Msa0532500 | MtrunA17_Chr2g0331521 | 32.224 | 571 | 332 | 9 | 12 | 536 | 2 | 563 | 1.94e-96 | 305 |
Msa0532500 | MtrunA17_Chr1g0157611 | 32.241 | 580 | 323 | 12 | 1 | 536 | 1 | 554 | 1.69e-95 | 301 |
Msa0532500 | MtrunA17_Chr1g0157601 | 32.188 | 553 | 327 | 8 | 26 | 536 | 7 | 553 | 2.21e-95 | 301 |
Msa0532500 | MtrunA17_Chr7g0240281 | 33.214 | 560 | 323 | 10 | 28 | 541 | 20 | 574 | 2.08e-92 | 294 |
Msa0532500 | MtrunA17_Chr2g0331471 | 32.727 | 550 | 317 | 10 | 32 | 536 | 88 | 629 | 2.30e-88 | 286 |
Msa0532500 | MtrunA17_Chr1g0177591 | 34.015 | 538 | 307 | 11 | 32 | 536 | 42 | 564 | 2.58e-88 | 283 |
Msa0532500 | MtrunA17_Chr2g0331481 | 32.727 | 550 | 317 | 9 | 32 | 536 | 25 | 566 | 2.93e-88 | 285 |
Msa0532500 | MtrunA17_Chr7g0261731 | 40.571 | 350 | 161 | 5 | 1 | 311 | 1 | 342 | 1.15e-86 | 272 |
Msa0532500 | MtrunA17_Chr1g0157621 | 31.549 | 523 | 313 | 7 | 53 | 536 | 1 | 517 | 1.80e-86 | 278 |
Msa0532500 | MtrunA17_Chr2g0331511 | 31.228 | 570 | 341 | 10 | 10 | 536 | 1 | 562 | 5.31e-86 | 278 |
Msa0532500 | MtrunA17_Chr5g0415841 | 35.198 | 429 | 270 | 4 | 115 | 539 | 35 | 459 | 1.09e-85 | 273 |
Msa0532500 | MtrunA17_Chr4g0003761 | 30.882 | 544 | 325 | 8 | 36 | 536 | 34 | 569 | 9.75e-83 | 269 |
Msa0532500 | MtrunA17_Chr7g0235521 | 33.871 | 434 | 277 | 5 | 115 | 541 | 31 | 461 | 2.75e-80 | 259 |
Msa0532500 | MtrunA17_Chr7g0240211 | 34.101 | 434 | 276 | 5 | 115 | 541 | 31 | 461 | 3.82e-80 | 259 |
Msa0532500 | MtrunA17_Chr7g0240181 | 34.101 | 434 | 276 | 5 | 115 | 541 | 31 | 461 | 3.86e-80 | 259 |
Msa0532500 | MtrunA17_Chr1g0177611 | 36.744 | 430 | 251 | 9 | 113 | 536 | 21 | 435 | 1.84e-79 | 256 |
Msa0532500 | MtrunA17_Chr7g0240131 | 33.641 | 434 | 278 | 5 | 115 | 541 | 31 | 461 | 5.41e-79 | 256 |
Msa0532500 | MtrunA17_Chr3g0142121 | 46.097 | 269 | 134 | 3 | 272 | 540 | 12 | 269 | 1.30e-78 | 248 |
Msa0532500 | MtrunA17_Chr3g0142111 | 43.226 | 310 | 140 | 3 | 4 | 277 | 17 | 326 | 2.22e-78 | 250 |
Msa0532500 | MtrunA17_Chr2g0331461 | 31.034 | 551 | 325 | 10 | 32 | 536 | 25 | 566 | 6.72e-78 | 257 |
Msa0532500 | MtrunA17_Chr1g0177631 | 35.897 | 429 | 256 | 8 | 113 | 536 | 21 | 435 | 1.12e-74 | 243 |
Msa0532500 | MtrunA17_Chr2g0325961 | 28.998 | 569 | 337 | 9 | 20 | 541 | 2 | 550 | 1.38e-73 | 244 |
Msa0532500 | MtrunA17_Chr7g0240151 | 32.719 | 434 | 264 | 6 | 115 | 541 | 31 | 443 | 1.27e-72 | 239 |
Msa0532500 | MtrunA17_Chr2g0325951 | 29.277 | 567 | 337 | 9 | 20 | 541 | 2 | 549 | 3.20e-72 | 240 |
Msa0532500 | MtrunA17_Chr2g0326211 | 27.719 | 570 | 339 | 9 | 19 | 541 | 6 | 549 | 6.62e-69 | 231 |
Msa0532500 | MtrunA17_Chr3g0112631 | 40.433 | 277 | 161 | 3 | 270 | 544 | 3 | 277 | 3.97e-68 | 221 |
Msa0532500 | MtrunA17_Chr4g0060071 | 38.908 | 293 | 168 | 4 | 249 | 539 | 15 | 298 | 2.09e-65 | 215 |
Msa0532500 | MtrunA17_Chr7g0234181 | 32.227 | 422 | 255 | 7 | 115 | 536 | 23 | 413 | 3.41e-60 | 204 |
Msa0532500 | MtrunA17_Chr7g0234151 | 32.227 | 422 | 255 | 7 | 115 | 536 | 28 | 418 | 1.05e-59 | 203 |
Msa0532500 | MtrunA17_Chr7g0234381 | 31.754 | 422 | 257 | 7 | 115 | 536 | 28 | 418 | 1.25e-58 | 200 |
Msa0532500 | MtrunA17_Chr7g0261721 | 41.791 | 201 | 116 | 1 | 340 | 539 | 1 | 201 | 5.33e-50 | 172 |
Msa0532500 | MtrunA17_Chr3g0112651 | 43.590 | 156 | 86 | 1 | 115 | 270 | 49 | 202 | 1.79e-36 | 135 |
Msa0532500 | MtrunA17_Chr1g0147591 | 37.374 | 198 | 112 | 4 | 125 | 316 | 9 | 200 | 1.75e-35 | 132 |
Msa0532500 | MtrunA17_Chr4g0060061 | 48.246 | 114 | 59 | 0 | 115 | 228 | 15 | 128 | 3.63e-31 | 117 |
Msa0532500 | MtrunA17_Chr7g0261831 | 38.365 | 159 | 91 | 2 | 227 | 384 | 3 | 155 | 3.84e-30 | 117 |
Msa0532500 | MtrunA17_Chr1g0166721 | 51.546 | 97 | 47 | 0 | 17 | 113 | 10 | 106 | 5.58e-29 | 112 |
Msa0532500 | MtrunA17_Chr2g0326221 | 29.289 | 239 | 141 | 4 | 303 | 541 | 15 | 225 | 5.77e-28 | 111 |
Msa0532500 | MtrunA17_Chr7g0261671 | 45.872 | 109 | 56 | 2 | 1 | 108 | 2 | 108 | 2.88e-25 | 100 |
Msa0532500 | MtrunA17_Chr4g0014851 | 44.444 | 90 | 50 | 0 | 20 | 109 | 18 | 107 | 9.75e-21 | 89.4 |
Msa0532500 | MtrunA17_Chr8g0362791 | 47.945 | 73 | 38 | 0 | 38 | 110 | 42 | 114 | 9.13e-16 | 74.7 |
Msa0532500 | MtrunA17_Chr3g0112661 | 41.379 | 87 | 51 | 0 | 20 | 106 | 19 | 105 | 1.38e-15 | 73.9 |
Msa0532500 | MtrunA17_Chr7g0240221 | 34.375 | 96 | 63 | 0 | 11 | 106 | 6 | 101 | 1.45e-15 | 73.2 |
Msa0532500 | MtrunA17_Chr7g0240191 | 34.375 | 96 | 63 | 0 | 11 | 106 | 6 | 101 | 1.45e-15 | 73.2 |
Msa0532500 | MtrunA17_Chr7g0240161 | 34.375 | 96 | 63 | 0 | 11 | 106 | 6 | 101 | 1.45e-15 | 73.2 |
Msa0532500 | MtrunA17_Chr7g0261821 | 46.032 | 63 | 34 | 0 | 477 | 539 | 1 | 63 | 5.40e-15 | 69.7 |
Msa0532500 | MtrunA17_Chr7g0240141 | 33.333 | 96 | 64 | 0 | 11 | 106 | 6 | 101 | 6.11e-15 | 71.2 |
Msa0532500 | MtrunA17_Chr7g0235511 | 32.653 | 98 | 64 | 1 | 11 | 106 | 6 | 103 | 4.21e-13 | 66.2 |
Msa0532500 | MtrunA17_Chr1g0147581 | 33.333 | 123 | 72 | 3 | 394 | 513 | 1 | 116 | 6.36e-13 | 65.5 |
Msa0532500 | MtrunA17_Chr5g0415851 | 47.692 | 65 | 34 | 0 | 46 | 110 | 6 | 70 | 7.25e-13 | 64.7 |
Msa0532500 | MtrunA17_Chr3g0082621 | 51.613 | 62 | 30 | 0 | 48 | 109 | 2 | 63 | 2.20e-12 | 63.2 |
Msa0532500 | MtrunA17_Chr8g0382591 | 35.577 | 104 | 63 | 2 | 273 | 372 | 6 | 109 | 5.26e-12 | 63.5 |
Msa0532500 | MtrunA17_Chr4g0060051 | 35.789 | 95 | 61 | 0 | 12 | 106 | 2 | 96 | 2.76e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0532500 | AT3G54140.1 | 72.647 | 563 | 120 | 2 | 12 | 540 | 2 | 564 | 0.0 | 853 |
Msa0532500 | AT3G54140.2 | 72.647 | 563 | 120 | 2 | 12 | 540 | 2 | 564 | 0.0 | 853 |
Msa0532500 | AT5G01180.2 | 69.258 | 566 | 141 | 2 | 10 | 542 | 1 | 566 | 0.0 | 811 |
Msa0532500 | AT5G01180.3 | 69.258 | 566 | 141 | 2 | 10 | 542 | 1 | 566 | 0.0 | 811 |
Msa0532500 | AT5G01180.1 | 69.258 | 566 | 141 | 2 | 10 | 542 | 1 | 566 | 0.0 | 811 |
Msa0532500 | AT2G02040.1 | 58.348 | 569 | 196 | 5 | 12 | 542 | 19 | 584 | 0.0 | 675 |
Msa0532500 | AT1G62200.1 | 53.022 | 579 | 219 | 6 | 2 | 540 | 23 | 588 | 0.0 | 620 |
Msa0532500 | AT1G62200.3 | 50.658 | 608 | 218 | 8 | 2 | 540 | 37 | 631 | 0.0 | 606 |
Msa0532500 | AT1G62200.2 | 50.658 | 608 | 218 | 8 | 2 | 540 | 23 | 617 | 0.0 | 605 |
Msa0532500 | AT2G02020.1 | 49.296 | 568 | 212 | 7 | 10 | 541 | 18 | 545 | 0.0 | 557 |
Msa0532500 | AT2G02020.2 | 46.127 | 568 | 209 | 9 | 10 | 541 | 18 | 524 | 1.90e-172 | 498 |
Msa0532500 | AT1G68570.1 | 44.803 | 558 | 266 | 5 | 24 | 541 | 15 | 570 | 2.58e-154 | 454 |
Msa0532500 | AT1G68570.2 | 45.522 | 536 | 252 | 4 | 46 | 541 | 5 | 540 | 2.78e-152 | 448 |
Msa0532500 | AT4G21680.1 | 41.975 | 567 | 281 | 7 | 18 | 540 | 12 | 574 | 1.53e-145 | 432 |
Msa0532500 | AT2G40460.1 | 39.432 | 563 | 297 | 5 | 12 | 539 | 2 | 555 | 9.34e-144 | 427 |
Msa0532500 | AT3G54450.1 | 40.631 | 539 | 289 | 8 | 31 | 541 | 9 | 544 | 9.74e-144 | 426 |
Msa0532500 | AT1G32450.1 | 39.721 | 574 | 299 | 7 | 6 | 536 | 12 | 581 | 3.39e-142 | 424 |
Msa0532500 | AT2G26690.1 | 43.416 | 562 | 267 | 7 | 12 | 533 | 2 | 552 | 4.34e-142 | 422 |
Msa0532500 | AT5G46050.1 | 39.719 | 569 | 297 | 5 | 10 | 539 | 3 | 564 | 9.71e-140 | 416 |
Msa0532500 | AT5G19640.1 | 39.212 | 584 | 294 | 8 | 2 | 543 | 22 | 586 | 1.50e-139 | 417 |
Msa0532500 | AT5G13400.1 | 40.000 | 565 | 290 | 6 | 23 | 541 | 52 | 613 | 2.26e-139 | 417 |
Msa0532500 | AT5G46040.1 | 38.664 | 569 | 303 | 4 | 10 | 539 | 3 | 564 | 1.81e-134 | 403 |
Msa0532500 | AT1G12110.1 | 39.785 | 558 | 291 | 7 | 24 | 540 | 17 | 570 | 2.00e-134 | 403 |
Msa0532500 | AT2G26690.2 | 43.750 | 528 | 246 | 7 | 46 | 533 | 3 | 519 | 8.36e-133 | 397 |
Msa0532500 | AT1G69870.1 | 39.746 | 551 | 284 | 9 | 32 | 539 | 49 | 594 | 5.84e-132 | 398 |
Msa0532500 | AT2G37900.1 | 39.100 | 578 | 305 | 7 | 1 | 541 | 1 | 568 | 6.85e-131 | 394 |
Msa0532500 | AT2G26690.3 | 43.714 | 517 | 240 | 7 | 57 | 533 | 2 | 507 | 1.73e-129 | 389 |
Msa0532500 | AT1G22540.1 | 38.772 | 570 | 294 | 6 | 8 | 541 | 4 | 554 | 2.73e-129 | 389 |
Msa0532500 | AT3G53960.1 | 38.959 | 557 | 301 | 7 | 20 | 541 | 23 | 575 | 5.46e-129 | 390 |
Msa0532500 | AT1G22550.1 | 36.878 | 583 | 299 | 8 | 10 | 544 | 3 | 564 | 5.86e-127 | 383 |
Msa0532500 | AT1G72130.1 | 37.522 | 557 | 278 | 10 | 18 | 540 | 14 | 534 | 4.07e-126 | 380 |
Msa0532500 | AT3G21670.1 | 40.103 | 581 | 279 | 10 | 4 | 539 | 2 | 558 | 8.04e-126 | 381 |
Msa0532500 | AT1G72125.1 | 39.755 | 571 | 290 | 11 | 7 | 541 | 6 | 558 | 8.37e-126 | 380 |
Msa0532500 | AT1G72140.1 | 35.875 | 577 | 296 | 9 | 9 | 540 | 6 | 553 | 3.30e-125 | 378 |
Msa0532500 | AT1G59740.1 | 37.857 | 560 | 301 | 6 | 11 | 531 | 18 | 569 | 1.92e-124 | 377 |
Msa0532500 | AT1G72120.1 | 37.655 | 563 | 298 | 7 | 17 | 544 | 13 | 557 | 5.59e-121 | 367 |
Msa0532500 | AT1G22570.1 | 36.364 | 583 | 303 | 10 | 10 | 544 | 3 | 565 | 3.76e-120 | 365 |
Msa0532500 | AT1G27040.1 | 37.676 | 568 | 285 | 9 | 20 | 538 | 13 | 560 | 1.50e-117 | 359 |
Msa0532500 | AT1G27040.2 | 37.676 | 568 | 285 | 9 | 20 | 538 | 9 | 556 | 1.88e-117 | 358 |
Msa0532500 | AT2G37900.2 | 40.361 | 498 | 254 | 6 | 77 | 541 | 2 | 489 | 5.92e-117 | 355 |
Msa0532500 | AT1G69850.1 | 37.262 | 577 | 297 | 9 | 20 | 539 | 11 | 579 | 8.07e-117 | 358 |
Msa0532500 | AT1G27040.3 | 38.026 | 547 | 270 | 9 | 41 | 538 | 2 | 528 | 2.31e-114 | 350 |
Msa0532500 | AT5G62730.1 | 36.538 | 572 | 305 | 10 | 10 | 540 | 32 | 586 | 2.04e-113 | 349 |
Msa0532500 | AT1G18880.1 | 34.798 | 569 | 321 | 9 | 19 | 541 | 4 | 568 | 4.13e-113 | 348 |
Msa0532500 | AT1G27080.1 | 36.413 | 552 | 292 | 9 | 32 | 539 | 12 | 548 | 6.33e-113 | 347 |
Msa0532500 | AT1G22570.2 | 36.697 | 545 | 280 | 9 | 45 | 544 | 4 | 528 | 1.40e-112 | 345 |
Msa0532500 | AT1G33440.1 | 35.079 | 573 | 315 | 7 | 7 | 537 | 11 | 568 | 5.07e-111 | 343 |
Msa0532500 | AT5G46050.2 | 41.686 | 427 | 240 | 3 | 115 | 539 | 33 | 452 | 5.73e-111 | 339 |
Msa0532500 | AT5G62730.2 | 37.269 | 542 | 282 | 10 | 40 | 540 | 3 | 527 | 1.45e-109 | 337 |
Msa0532500 | AT1G52190.1 | 34.477 | 554 | 308 | 8 | 32 | 536 | 19 | 566 | 2.35e-107 | 334 |
Msa0532500 | AT1G72130.2 | 38.018 | 434 | 230 | 7 | 115 | 540 | 14 | 416 | 4.26e-106 | 325 |
Msa0532500 | AT1G72130.3 | 38.018 | 434 | 230 | 7 | 115 | 540 | 14 | 416 | 4.26e-106 | 325 |
Msa0532500 | AT5G14940.1 | 33.577 | 548 | 307 | 11 | 32 | 536 | 5 | 538 | 3.57e-102 | 319 |
Msa0532500 | AT3G16180.1 | 34.286 | 560 | 309 | 11 | 27 | 536 | 15 | 565 | 2.17e-101 | 318 |
Msa0532500 | AT3G47960.1 | 33.808 | 562 | 324 | 9 | 23 | 539 | 50 | 608 | 3.90e-101 | 318 |
Msa0532500 | AT5G62680.1 | 33.746 | 566 | 321 | 10 | 24 | 539 | 31 | 592 | 5.05e-101 | 318 |
Msa0532500 | AT1G27080.2 | 35.645 | 519 | 275 | 9 | 65 | 539 | 3 | 506 | 9.94e-101 | 315 |
Msa0532500 | AT5G28470.2 | 32.310 | 554 | 326 | 10 | 32 | 543 | 15 | 561 | 2.13e-94 | 299 |
Msa0532500 | AT5G28470.1 | 32.130 | 554 | 325 | 11 | 32 | 543 | 15 | 559 | 2.16e-91 | 291 |
Msa0532500 | AT3G01350.1 | 32.432 | 555 | 316 | 12 | 31 | 536 | 4 | 548 | 8.87e-91 | 290 |
Msa0532500 | AT1G69860.1 | 32.389 | 565 | 327 | 9 | 19 | 543 | 4 | 553 | 6.12e-88 | 282 |
Msa0532500 | AT3G45650.1 | 29.130 | 563 | 337 | 8 | 18 | 541 | 6 | 545 | 8.05e-82 | 266 |
Msa0532500 | AT3G45660.1 | 30.114 | 528 | 307 | 7 | 53 | 541 | 40 | 544 | 7.13e-80 | 261 |
Msa0532500 | AT3G45660.3 | 30.114 | 528 | 307 | 7 | 53 | 541 | 40 | 544 | 7.13e-80 | 261 |
Msa0532500 | AT3G45660.2 | 30.114 | 528 | 307 | 7 | 53 | 541 | 61 | 565 | 1.13e-79 | 261 |
Msa0532500 | AT3G25260.1 | 30.601 | 549 | 311 | 8 | 19 | 536 | 6 | 515 | 3.12e-79 | 258 |
Msa0532500 | AT3G45680.1 | 28.673 | 565 | 340 | 11 | 16 | 541 | 4 | 544 | 3.32e-78 | 256 |
Msa0532500 | AT3G45720.1 | 29.714 | 525 | 307 | 10 | 56 | 541 | 41 | 542 | 1.02e-77 | 255 |
Msa0532500 | AT3G45650.2 | 28.014 | 589 | 336 | 9 | 18 | 541 | 6 | 571 | 7.41e-77 | 253 |
Msa0532500 | AT3G25280.1 | 30.093 | 535 | 308 | 7 | 34 | 536 | 21 | 521 | 2.43e-72 | 240 |
Msa0532500 | AT3G45710.1 | 27.027 | 555 | 345 | 8 | 26 | 541 | 13 | 546 | 3.98e-72 | 240 |
Msa0532500 | AT3G45700.1 | 27.544 | 570 | 332 | 13 | 18 | 543 | 4 | 536 | 2.33e-70 | 235 |
Msa0532500 | AT3G45690.1 | 26.679 | 551 | 306 | 12 | 27 | 541 | 13 | 501 | 2.46e-61 | 211 |
Msa0532500 | AT2G38100.2 | 25.646 | 503 | 328 | 8 | 62 | 537 | 2 | 485 | 1.11e-45 | 168 |
Msa0532500 | AT2G38100.1 | 25.646 | 503 | 328 | 8 | 62 | 537 | 18 | 501 | 1.92e-45 | 167 |
Msa0532500 | AT2G38100.3 | 25.646 | 503 | 328 | 8 | 62 | 537 | 24 | 507 | 4.17e-45 | 167 |
Msa0532500 | AT5G11570.1 | 34.940 | 249 | 152 | 4 | 289 | 536 | 237 | 476 | 3.16e-37 | 144 |
Msa0532500 | AT5G11570.1 | 32.922 | 243 | 115 | 6 | 43 | 247 | 22 | 254 | 4.54e-30 | 123 |
Find 136 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCGCTACCGACAAATTAA+AGG | 0.158557 | 4_1:+6589765 | None:intergenic |
CATTTGTGTGTTCAAGTTTC+CGG | 0.188591 | 4_1:+6587733 | None:intergenic |
GTCGGATGGGGATGGGGTTT+TGG | 0.221483 | 4_1:-6587960 | Msa0532500:CDS |
GACCGTCTCATCGTCCCTTT+TGG | 0.227591 | 4_1:-6587252 | Msa0532500:CDS |
ACACTCTAAGTGTCATCTTC+TGG | 0.233776 | 4_1:-6587287 | Msa0532500:CDS |
TCAAGTAGAGTGCTATAAAA+AGG | 0.241063 | 4_1:+6588159 | None:intergenic |
AAACCGTGTGTTTCATCTTT+TGG | 0.251095 | 4_1:-6588113 | Msa0532500:CDS |
CAAGTATGCATCAGCTAAAA+AGG | 0.280188 | 4_1:+6589141 | None:intergenic |
TTTCCCTGATTTCAGGTGTT+TGG | 0.304831 | 4_1:-6587556 | Msa0532500:intron |
CGACTCTATCTAAGCAATTC+AGG | 0.306879 | 4_1:+6586622 | None:intergenic |
AAGTTATTGTTGCAGCATTT+AGG | 0.328500 | 4_1:-6587833 | Msa0532500:CDS |
GGAAATCAATTGTTCTACTA+TGG | 0.335666 | 4_1:-6589728 | Msa0532500:exon |
CCATCCCTATGTCGATCTTC+TGG | 0.340879 | 4_1:-6587077 | Msa0532500:CDS |
TTGCTTCCTCGGTGTTGGTT+TGG | 0.353446 | 4_1:-6587995 | Msa0532500:CDS |
TGACCCCTATTCATATTATC+TGG | 0.356552 | 4_1:+6586844 | None:intergenic |
GAAGTAAAACCAATTGAAAA+AGG | 0.359554 | 4_1:+6588040 | None:intergenic |
CACTCTAAGTGTCATCTTCT+GGG | 0.360635 | 4_1:-6587286 | Msa0532500:CDS |
CGTTCGTTTACTCCCCGTTT+GGG | 0.363000 | 4_1:-6587436 | Msa0532500:CDS |
ATCCACACAGAAATATTTGC+AGG | 0.374725 | 4_1:+6586578 | None:intergenic |
ACAAAAGTTACAACAAGAAA+TGG | 0.382754 | 4_1:-6586883 | Msa0532500:CDS |
CTTGAAGACCGTTACGGACT+TGG | 0.389786 | 4_1:-6589232 | Msa0532500:CDS |
TCGTTCGTTTACTCCCCGTT+TGG | 0.403486 | 4_1:-6587437 | Msa0532500:CDS |
TGATTTCAGGTGTTTGGATA+AGG | 0.407783 | 4_1:-6587550 | Msa0532500:intron |
TACTTGATTGCACTTGGAAC+TGG | 0.410274 | 4_1:-6588143 | Msa0532500:CDS |
TGCAACAGTATACAGTCAAA+TGG | 0.413873 | 4_1:-6587397 | Msa0532500:CDS |
GGATTCCAGATAATATGAAT+AGG | 0.414072 | 4_1:-6586849 | Msa0532500:CDS |
TTCACTCACAACTAATGCAT+TGG | 0.422202 | 4_1:-6586941 | Msa0532500:CDS |
GTCATCTTGATTACTTCTAC+TGG | 0.423570 | 4_1:-6586825 | Msa0532500:CDS |
AGCGAAGATAACAAGTAAAC+AGG | 0.424664 | 4_1:-6589749 | Msa0532500:five_prime_UTR |
GTTGCAGCATTTAGGAAACT+TGG | 0.431571 | 4_1:-6587825 | Msa0532500:CDS |
CCGGTGAACTTTCTTCCAAA+AGG | 0.432712 | 4_1:+6587237 | None:intergenic |
CGGTGCACTCATTGCTTCCT+CGG | 0.439767 | 4_1:-6588006 | Msa0532500:CDS |
ACTTGACAAATCCTTGTAAG+AGG | 0.442092 | 4_1:+6587852 | None:intergenic |
GATTCCAGATAATATGAATA+GGG | 0.442981 | 4_1:-6586848 | Msa0532500:CDS |
AAAGCATGCCGCTTTATTCT+CGG | 0.445366 | 4_1:-6589595 | Msa0532500:intron |
TAAAGAAGAGACTTATCATC+TGG | 0.447791 | 4_1:+6587792 | None:intergenic |
GGCTATCAGTGATGCCCAAA+CGG | 0.448610 | 4_1:+6587422 | None:intergenic |
ATCATTTCCATGATCGTGGC+CGG | 0.449284 | 4_1:-6587159 | Msa0532500:CDS |
ATGAATGTCGGATGGGGATG+GGG | 0.453174 | 4_1:-6587966 | Msa0532500:CDS |
ACTCATTGCTTCCTCGGTGT+TGG | 0.455639 | 4_1:-6588000 | Msa0532500:CDS |
TAGAATCCCGGCCACGATCA+TGG | 0.456374 | 4_1:+6587152 | None:intergenic |
GTGCAGAGCCTCCATGGATT+CGG | 0.457325 | 4_1:+6587489 | None:intergenic |
TCACTCACAACTAATGCATT+GGG | 0.458337 | 4_1:-6586940 | Msa0532500:CDS |
GCTATCAGTGATGCCCAAAC+GGG | 0.459760 | 4_1:+6587423 | None:intergenic |
ATGCATACTTGGGAAGATAC+TGG | 0.462100 | 4_1:-6589129 | Msa0532500:CDS |
TGACACTTAGAGTGTCGAAA+AGG | 0.462376 | 4_1:+6587295 | None:intergenic |
TAAACACGCCTTTAATTTGT+CGG | 0.463577 | 4_1:-6589773 | Msa0532500:five_prime_UTR |
GATGAATGTCGGATGGGGAT+GGG | 0.465810 | 4_1:-6587967 | Msa0532500:CDS |
GCTGTGTGAATCCGTGTTCA+TGG | 0.471308 | 4_1:+6587214 | None:intergenic |
CGGTGAACTTTCTTCCAAAA+GGG | 0.473511 | 4_1:+6587238 | None:intergenic |
ATACTTTATTTAATAATCAA+AGG | 0.474135 | 4_1:+6586673 | None:intergenic |
TGTATCTATTGATTGCTAAG+AGG | 0.474542 | 4_1:-6586768 | Msa0532500:CDS |
ACAACAAGAAATGGAAGTCT+TGG | 0.476872 | 4_1:-6586874 | Msa0532500:CDS |
AGATGAATGTCGGATGGGGA+TGG | 0.477086 | 4_1:-6587968 | Msa0532500:CDS |
TGTGAAAGATTGGCGTACTA+TGG | 0.478383 | 4_1:-6589280 | Msa0532500:CDS |
ATCAAAGGCTTCAACTCCTC+AGG | 0.483592 | 4_1:+6586688 | None:intergenic |
CCTCAGGTTACTCCTCATCT+AGG | 0.484597 | 4_1:+6586704 | None:intergenic |
TTCACACAGCTTCAAAGAAT+CGG | 0.484967 | 4_1:-6587201 | Msa0532500:CDS |
CAAGAAATGGAAGTCTTGGT+TGG | 0.487588 | 4_1:-6586870 | Msa0532500:CDS |
TGTTACATCACACCATTGCT+TGG | 0.490210 | 4_1:-6589166 | Msa0532500:CDS |
GATGGTTTATATACAGAAGA+TGG | 0.492031 | 4_1:-6589670 | Msa0532500:CDS |
GGAACCATGTTTGTGTTACA+AGG | 0.495089 | 4_1:-6587375 | Msa0532500:CDS |
AGCCACCAGAGAACAAAAGA+TGG | 0.498645 | 4_1:-6590333 | Msa0532500:five_prime_UTR |
CCATGTTCTGAATTCCGCAT+TGG | 0.498996 | 4_1:-6590271 | Msa0532500:five_prime_UTR |
ACGATGAGACGGTCGTAGAC+CGG | 0.502734 | 4_1:+6587261 | None:intergenic |
CTATGGCATGAGTACAAACT+TGG | 0.503933 | 4_1:-6589263 | Msa0532500:CDS |
CTGCAAATACTGTCACAACT+TGG | 0.505268 | 4_1:-6589198 | Msa0532500:CDS |
CGATGAGACGGTCGTAGACC+GGG | 0.505276 | 4_1:+6587262 | None:intergenic |
AAGTGTCATCTTCTGGGCCC+CGG | 0.506775 | 4_1:-6587280 | Msa0532500:CDS |
TTCCAAAAGGGACGATGAGA+CGG | 0.511531 | 4_1:+6587250 | None:intergenic |
GCAACAGTATACAGTCAAAT+GGG | 0.512639 | 4_1:-6587396 | Msa0532500:CDS |
GAAGATGTCAATCTAAAAGC+TGG | 0.513304 | 4_1:-6589706 | Msa0532500:CDS |
ATGTAGAATCTAACATCAAA+GGG | 0.513359 | 4_1:-6587758 | Msa0532500:CDS |
GCACTCTACTTGATTGCACT+TGG | 0.515219 | 4_1:-6588149 | Msa0532500:CDS |
GACACTTAGAGTGTCGAAAA+GGG | 0.515286 | 4_1:+6587296 | None:intergenic |
CACAAACTTCTCATAGCATC+AGG | 0.516091 | 4_1:+6586973 | None:intergenic |
AATACTGTCACAACTTGGTC+GGG | 0.519066 | 4_1:-6589193 | Msa0532500:CDS |
TAAAAGATTTACCGAATCCA+TGG | 0.520585 | 4_1:-6587500 | Msa0532500:CDS |
TTTCACTAATATCGGTCAGA+TGG | 0.527060 | 4_1:-6587016 | Msa0532500:CDS |
GTTACTGTGCAGAGCCTCCA+TGG | 0.528525 | 4_1:+6587483 | None:intergenic |
AAATGAATGTTGTGAAAGAT+TGG | 0.530609 | 4_1:-6589290 | Msa0532500:CDS |
GATGTAGAATCTAACATCAA+AGG | 0.533602 | 4_1:-6587759 | Msa0532500:CDS |
TCATTTCCATGATCGTGGCC+GGG | 0.533978 | 4_1:-6587158 | Msa0532500:CDS |
AAATACTGTCACAACTTGGT+CGG | 0.534850 | 4_1:-6589194 | Msa0532500:CDS |
CTGGTGGAAGTCCTCTTACA+AGG | 0.537556 | 4_1:-6587863 | Msa0532500:CDS |
AACTATCTTGAAGACCGTTA+CGG | 0.538666 | 4_1:-6589238 | Msa0532500:CDS |
TGGAGTGCCTGGAGTTGCAA+TGG | 0.539760 | 4_1:-6587940 | Msa0532500:CDS |
CAGCTTCAAAGAATCGGAAT+CGG | 0.543032 | 4_1:-6587195 | Msa0532500:CDS |
TTGCAGCATTTAGGAAACTT+GGG | 0.546918 | 4_1:-6587824 | Msa0532500:CDS |
AATCTAACATCAAAGGGAGC+CGG | 0.551381 | 4_1:-6587752 | Msa0532500:CDS |
TGTGAATCCGTGTTCATGGC+CGG | 0.553955 | 4_1:+6587218 | None:intergenic |
GCGGATGACTTCTAGAATCC+CGG | 0.558196 | 4_1:+6587140 | None:intergenic |
GCGATAACCATTGCAACTCC+AGG | 0.558801 | 4_1:+6587933 | None:intergenic |
ACTTGCCAGAAGATCGACAT+AGG | 0.569304 | 4_1:+6587072 | None:intergenic |
GGATACAGATGAATGTCGGA+TGG | 0.573725 | 4_1:-6587974 | Msa0532500:CDS |
CCAATGCGGAATTCAGAACA+TGG | 0.574591 | 4_1:+6590271 | None:intergenic |
TGGAAATGATTGAGATGACT+AGG | 0.582009 | 4_1:+6587172 | None:intergenic |
TTGACTGTATACTGTTGCAA+AGG | 0.587730 | 4_1:+6587401 | None:intergenic |
GATACAGATGAATGTCGGAT+GGG | 0.590289 | 4_1:-6587973 | Msa0532500:CDS |
TTGATTGCACTTGGAACTGG+TGG | 0.592391 | 4_1:-6588140 | Msa0532500:CDS |
CAGTAGAGACAGAATCCGAC+CGG | 0.595827 | 4_1:-6587524 | Msa0532500:CDS |
TGGTATAGACTTCAAATACC+TGG | 0.596885 | 4_1:-6587882 | Msa0532500:CDS |
CTCAATCATTTCCATGATCG+TGG | 0.602413 | 4_1:-6587163 | Msa0532500:CDS |
AAAAGGGAGAGAGAAGCTGA+TGG | 0.610539 | 4_1:+6587312 | None:intergenic |
CCAGAAGATCGACATAGGGA+TGG | 0.612471 | 4_1:+6587077 | None:intergenic |
AAGTTCACCGGCCATGAACA+CGG | 0.612897 | 4_1:-6587225 | Msa0532500:CDS |
CTTGTAAGAGGACTTCCACC+AGG | 0.614606 | 4_1:+6587864 | None:intergenic |
GTGAGAAATGTACCTAGATG+AGG | 0.619822 | 4_1:-6586716 | Msa0532500:exon |
AGGGTTACATTACATGAAGA+GGG | 0.622745 | 4_1:-6590358 | None:intergenic |
GCTGGTGTGAATGAAGAAGA+TGG | 0.624270 | 4_1:-6589688 | Msa0532500:CDS |
CTGCATTTCCAAGTCCGTAA+CGG | 0.628403 | 4_1:+6589224 | None:intergenic |
AATTGCTTAGATAGAGTCGT+AGG | 0.631827 | 4_1:-6586618 | Msa0532500:three_prime_UTR |
TCCGACATCAGGACAAACTG+CGG | 0.633570 | 4_1:-6588183 | Msa0532500:intron |
ATTCCAGATAATATGAATAG+GGG | 0.635841 | 4_1:-6586847 | Msa0532500:CDS |
ATTTAATACCGAGAATAAAG+CGG | 0.636396 | 4_1:+6589587 | None:intergenic |
ATGGGCAAAGACAAAACTAG+TGG | 0.637700 | 4_1:+6590290 | None:intergenic |
GTACCGCAGTATTTCCTCGT+AGG | 0.638440 | 4_1:-6587051 | Msa0532500:CDS |
GTTTGGATACAGATGAATGT+CGG | 0.639388 | 4_1:-6587978 | Msa0532500:CDS |
GATATTAGTGAAAACTTCTG+CGG | 0.642980 | 4_1:+6587026 | None:intergenic |
ATACAGATGAATGTCGGATG+GGG | 0.656151 | 4_1:-6587972 | Msa0532500:CDS |
CTTGCCAGAAGATCGACATA+GGG | 0.656281 | 4_1:+6587073 | None:intergenic |
ATGAAAACGACGAGACTGAG+AGG | 0.659831 | 4_1:-6588076 | Msa0532500:CDS |
TGTGTTACAAGGCAACACAA+TGG | 0.665398 | 4_1:-6587364 | Msa0532500:CDS |
CAATGCGGAATTCAGAACAT+GGG | 0.668260 | 4_1:+6590272 | None:intergenic |
TATAGACTTCAAATACCTGG+TGG | 0.669427 | 4_1:-6587879 | Msa0532500:CDS |
AAACTTCTGCGGCACCTACG+AGG | 0.670044 | 4_1:+6587037 | None:intergenic |
GATGAGACGGTCGTAGACCG+GGG | 0.681272 | 4_1:+6587263 | None:intergenic |
GTTGCCTTGTAACACAAACA+TGG | 0.693293 | 4_1:+6587371 | None:intergenic |
CTATCAGTGATGCCCAAACG+GGG | 0.694144 | 4_1:+6587424 | None:intergenic |
AACCTGCAAATATTTCTGTG+TGG | 0.713015 | 4_1:-6586580 | Msa0532500:three_prime_UTR |
AACACAATGGATCAACACAT+CGG | 0.713130 | 4_1:-6587351 | Msa0532500:CDS |
CCTAGATGAGGAGTAACCTG+AGG | 0.714857 | 4_1:-6586704 | Msa0532500:three_prime_UTR |
AAGATTTACCGAATCCATGG+AGG | 0.715910 | 4_1:-6587497 | Msa0532500:CDS |
GCACCAAAAGATGAAACACA+CGG | 0.721405 | 4_1:+6588110 | None:intergenic |
CTGTATCCAAACCAACACCG+AGG | 0.799571 | 4_1:+6587989 | None:intergenic |
GCACCTACGAGGAAATACTG+CGG | 0.845378 | 4_1:+6587048 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAAAAAATATATATAT+TGG | + | chr4_1:6586884-6586903 | None:intergenic | 0.0% |
!! | CATAAAGATAAATATAAAAA+TGG | + | chr4_1:6589220-6589239 | None:intergenic | 10.0% |
!!! | ATACTTTATTTAATAATCAA+AGG | + | chr4_1:6590236-6590255 | None:intergenic | 10.0% |
!! | ATTGAATTCATATTAATACA+TGG | + | chr4_1:6587041-6587060 | None:intergenic | 15.0% |
!!! | TTGTTAAAATGTTTTGATAA+AGG | - | chr4_1:6587863-6587882 | Msa0532500:CDS | 15.0% |
!!! | ATTTTCAAGAAATTTTAACT+CGG | - | chr4_1:6588456-6588475 | Msa0532500:intron | 15.0% |
!!! | TTTTACTTCTCAATTAATAT+CGG | - | chr4_1:6588880-6588899 | Msa0532500:intron | 15.0% |
!!! | TTATATTTTTCTAACCAATG+CGG | + | chr4_1:6586652-6586671 | None:intergenic | 20.0% |
!! | AGTATTAAGAGAAAAATGTA+GGG | + | chr4_1:6586697-6586716 | None:intergenic | 20.0% |
!! | AAGTATTAAGAGAAAAATGT+AGG | + | chr4_1:6586698-6586717 | None:intergenic | 20.0% |
!!! | TACATTTTTCTCTTAATACT+TGG | - | chr4_1:6586697-6586716 | Msa0532500:three_prime_UTR | 20.0% |
!! | TGAATTTGTATGCATTATAT+AGG | - | chr4_1:6586767-6586786 | Msa0532500:CDS | 20.0% |
!! | AATATATCAGATTAACATCA+AGG | + | chr4_1:6586949-6586968 | None:intergenic | 20.0% |
!!! | TTACTTGAATTTCAAGTAAA+CGG | + | chr4_1:6588090-6588109 | None:intergenic | 20.0% |
!!! | TTTTCAAGAAATTTTAACTC+GGG | - | chr4_1:6588457-6588476 | Msa0532500:intron | 20.0% |
!! | TACATTAAAAGTTAATTGAC+AGG | + | chr4_1:6588609-6588628 | None:intergenic | 20.0% |
!!! | GCATTGGTTAGAAAAATATA+AGG | - | chr4_1:6586651-6586670 | Msa0532500:three_prime_UTR | 25.0% |
! | GGTTAGAAAAATATAAGGTT+CGG | - | chr4_1:6586656-6586675 | Msa0532500:three_prime_UTR | 25.0% |
! | ATTTAATACCGAGAATAAAG+CGG | + | chr4_1:6587322-6587341 | None:intergenic | 25.0% |
! | TCATATCTGATATATATTCC+TGG | - | chr4_1:6587374-6587393 | Msa0532500:CDS | 25.0% |
! | AAATGAATGTTGTGAAAGAT+TGG | - | chr4_1:6587616-6587635 | Msa0532500:intron | 25.0% |
! | AGTTCATATTTAAACATCTG+AGG | - | chr4_1:6587913-6587932 | Msa0532500:CDS | 25.0% |
! | TCAAATAAGTCAATCAAAAC+AGG | + | chr4_1:6588523-6588542 | None:intergenic | 25.0% |
! | GAAGTAAAACCAATTGAAAA+AGG | + | chr4_1:6588869-6588888 | None:intergenic | 25.0% |
!! | GCCATTATATTTTTCTTCAT+CGG | - | chr4_1:6588994-6589013 | Msa0532500:intron | 25.0% |
! | ACCGATGAAGAAAAATATAA+TGG | + | chr4_1:6588998-6589017 | None:intergenic | 25.0% |
! | ATGTAGAATCTAACATCAAA+GGG | - | chr4_1:6589148-6589167 | Msa0532500:CDS | 25.0% |
!! | ACGAAGTTTAGAATAAGAAA+AGG | + | chr4_1:6589262-6589281 | None:intergenic | 25.0% |
! | ACAAAAGTTACAACAAGAAA+TGG | - | chr4_1:6590023-6590042 | Msa0532500:intron | 25.0% |
! | GATTCCAGATAATATGAATA+GGG | - | chr4_1:6590058-6590077 | Msa0532500:intron | 25.0% |
! | ATTCCAGATAATATGAATAG+GGG | - | chr4_1:6590059-6590078 | Msa0532500:intron | 25.0% |
CACAAAAACAACCAAACAAA+GGG | + | chr4_1:6586738-6586757 | None:intergenic | 30.0% | |
ACACAAAAACAACCAAACAA+AGG | + | chr4_1:6586739-6586758 | None:intergenic | 30.0% | |
!! | TAAACACGCCTTTAATTTGT+CGG | - | chr4_1:6587133-6587152 | Msa0532500:CDS | 30.0% |
GGAAATCAATTGTTCTACTA+TGG | - | chr4_1:6587178-6587197 | Msa0532500:CDS | 30.0% | |
GATGGTTTATATACAGAAGA+TGG | - | chr4_1:6587236-6587255 | Msa0532500:CDS | 30.0% | |
! | ATTTCCTGTCTTTTTCTTGT+TGG | + | chr4_1:6587288-6587307 | None:intergenic | 30.0% |
ACAAGAAAAAGACAGGAAAT+TGG | - | chr4_1:6587288-6587307 | Msa0532500:CDS | 30.0% | |
GCTTGAATAATAGAAATGTG+CGG | - | chr4_1:6587437-6587456 | Msa0532500:CDS | 30.0% | |
AATTGTTAGAACAACAATGC+TGG | + | chr4_1:6587542-6587561 | None:intergenic | 30.0% | |
AACAATTCTTGTCCTAGAAT+TGG | - | chr4_1:6587555-6587574 | Msa0532500:intron | 30.0% | |
GGAAAATGAAAAAATGTTGC+AGG | - | chr4_1:6587593-6587612 | Msa0532500:intron | 30.0% | |
!!! | TTTTTAGCTGATGCATACTT+GGG | - | chr4_1:6587767-6587786 | Msa0532500:CDS | 30.0% |
AGTTCAAAAGAATACACTGA+TGG | + | chr4_1:6588024-6588043 | None:intergenic | 30.0% | |
! | ATTTCAAGTAAACGGTTCAT+TGG | + | chr4_1:6588082-6588101 | None:intergenic | 30.0% |
!!! | GTTTTTGAAGTACATGGAAA+TGG | - | chr4_1:6588333-6588352 | Msa0532500:intron | 30.0% |
TCCTCAAAGTAGAATAGAAT+TGG | + | chr4_1:6588361-6588380 | None:intergenic | 30.0% | |
!!! | TCTTAGCTCTAGTTTCATTT+TGG | - | chr4_1:6588395-6588414 | Msa0532500:intron | 30.0% |
CAGATCATTAGTATCTAGTT+AGG | - | chr4_1:6588496-6588515 | Msa0532500:intron | 30.0% | |
! | CAAGTAGAGTGCTATAAAAA+GGG | + | chr4_1:6588749-6588768 | None:intergenic | 30.0% |
! | TCAAGTAGAGTGCTATAAAA+AGG | + | chr4_1:6588750-6588769 | None:intergenic | 30.0% |
!!! | AGAAAAGCTCCTTTTTCAAT+TGG | - | chr4_1:6588857-6588876 | Msa0532500:intron | 30.0% |
AAGTTATTGTTGCAGCATTT+AGG | - | chr4_1:6589073-6589092 | Msa0532500:intron | 30.0% | |
TAAAGAAGAGACTTATCATC+TGG | + | chr4_1:6589117-6589136 | None:intergenic | 30.0% | |
GATGTAGAATCTAACATCAA+AGG | - | chr4_1:6589147-6589166 | Msa0532500:CDS | 30.0% | |
AAACAAATTTCCCTGATTTC+AGG | - | chr4_1:6589343-6589362 | Msa0532500:intron | 30.0% | |
!! | GATTCGGTAAATCTTTTATC+CGG | + | chr4_1:6589404-6589423 | None:intergenic | 30.0% |
TAAAAGATTTACCGAATCCA+TGG | - | chr4_1:6589406-6589425 | Msa0532500:intron | 30.0% | |
! | GCTGATGGAATTTTGAATTT+AGG | + | chr4_1:6589582-6589601 | None:intergenic | 30.0% |
!!! | GATCATAGTAGTTGTTTTTG+CGG | + | chr4_1:6589803-6589822 | None:intergenic | 30.0% |
GATATTAGTGAAAACTTCTG+CGG | + | chr4_1:6589883-6589902 | None:intergenic | 30.0% | |
! | GCAGAAGTTTTCACTAATAT+CGG | - | chr4_1:6589882-6589901 | Msa0532500:intron | 30.0% |
GGATTCCAGATAATATGAAT+AGG | - | chr4_1:6590057-6590076 | Msa0532500:intron | 30.0% | |
! | TGTATCTATTGATTGCTAAG+AGG | - | chr4_1:6590138-6590157 | Msa0532500:intron | 30.0% |
ACAAAAAAGTGACTCATCTT+AGG | - | chr4_1:6590168-6590187 | Msa0532500:intron | 30.0% | |
! | CTTTTCCATCTTTTGTTCTC+TGG | + | chr4_1:6586581-6586600 | None:intergenic | 35.0% |
GTAAACCTAAACCCTTTGTT+TGG | - | chr4_1:6586724-6586743 | Msa0532500:exon | 35.0% | |
AACAACCAAACAAAGGGTTT+AGG | + | chr4_1:6586732-6586751 | None:intergenic | 35.0% | |
AGCGAAGATAACAAGTAAAC+AGG | - | chr4_1:6587157-6587176 | Msa0532500:CDS | 35.0% | |
GAAGATGTCAATCTAAAAGC+TGG | - | chr4_1:6587200-6587219 | Msa0532500:CDS | 35.0% | |
CACCATGTGCTTAAATACTA+CGG | + | chr4_1:6587401-6587420 | None:intergenic | 35.0% | |
TCTTAGTGTGATCCAATTCT+AGG | + | chr4_1:6587570-6587589 | None:intergenic | 35.0% | |
AATTGGATCACACTAAGATG+TGG | - | chr4_1:6587572-6587591 | Msa0532500:intron | 35.0% | |
AACTATCTTGAAGACCGTTA+CGG | - | chr4_1:6587668-6587687 | Msa0532500:intron | 35.0% | |
AAATACTGTCACAACTTGGT+CGG | - | chr4_1:6587712-6587731 | Msa0532500:intron | 35.0% | |
CAAGTATGCATCAGCTAAAA+AGG | + | chr4_1:6587768-6587787 | None:intergenic | 35.0% | |
!!! | CTTTTTAGCTGATGCATACT+TGG | - | chr4_1:6587766-6587785 | Msa0532500:CDS | 35.0% |
! | ATCTGAGGTTCATAGTCAAA+AGG | - | chr4_1:6587928-6587947 | Msa0532500:CDS | 35.0% |
CGATAGAGAAGAGAGATTAA+AGG | + | chr4_1:6588273-6588292 | None:intergenic | 35.0% | |
!!! | CAGTGAGTTTTTGAAGTACA+TGG | - | chr4_1:6588327-6588346 | Msa0532500:intron | 35.0% |
GCCAATTCTATTCTACTTTG+AGG | - | chr4_1:6588357-6588376 | Msa0532500:intron | 35.0% | |
AAGCCTTCATGTGATACTAA+TGG | - | chr4_1:6588694-6588713 | Msa0532500:intron | 35.0% | |
AGCCTTCATGTGATACTAAT+GGG | - | chr4_1:6588695-6588714 | Msa0532500:intron | 35.0% | |
! | AAACCGTGTGTTTCATCTTT+TGG | - | chr4_1:6588793-6588812 | Msa0532500:intron | 35.0% |
!! | TCTCGTCGTTTTCATCAAAT+TGG | + | chr4_1:6588825-6588844 | None:intergenic | 35.0% |
GTTTGGATACAGATGAATGT+CGG | - | chr4_1:6588928-6588947 | Msa0532500:intron | 35.0% | |
! | TTTTCTTCATCGGTAGTAGA+TGG | - | chr4_1:6589004-6589023 | Msa0532500:intron | 35.0% |
TGGTATAGACTTCAAATACC+TGG | - | chr4_1:6589024-6589043 | Msa0532500:intron | 35.0% | |
TATAGACTTCAAATACCTGG+TGG | - | chr4_1:6589027-6589046 | Msa0532500:intron | 35.0% | |
ACTTGACAAATCCTTGTAAG+AGG | + | chr4_1:6589057-6589076 | None:intergenic | 35.0% | |
TTGCAGCATTTAGGAAACTT+GGG | - | chr4_1:6589082-6589101 | Msa0532500:intron | 35.0% | |
! | CATTTGTGTGTTCAAGTTTC+CGG | + | chr4_1:6589176-6589195 | None:intergenic | 35.0% |
ATCTTTATGAGACTACTCGT+TGG | - | chr4_1:6589231-6589250 | Msa0532500:CDS | 35.0% | |
TATCCAAACACCTGAAATCA+GGG | + | chr4_1:6589356-6589375 | None:intergenic | 35.0% | |
TTATCCAAACACCTGAAATC+AGG | + | chr4_1:6589357-6589376 | None:intergenic | 35.0% | |
! | TGATTTCAGGTGTTTGGATA+AGG | - | chr4_1:6589356-6589375 | Msa0532500:intron | 35.0% |
TTGACTGTATACTGTTGCAA+AGG | + | chr4_1:6589508-6589527 | None:intergenic | 35.0% | |
TGCAACAGTATACAGTCAAA+TGG | - | chr4_1:6589509-6589528 | Msa0532500:intron | 35.0% | |
GCAACAGTATACAGTCAAAT+GGG | - | chr4_1:6589510-6589529 | Msa0532500:intron | 35.0% | |
AACACAATGGATCAACACAT+CGG | - | chr4_1:6589555-6589574 | Msa0532500:intron | 35.0% | |
TTCACACAGCTTCAAAGAAT+CGG | - | chr4_1:6589705-6589724 | Msa0532500:CDS | 35.0% | |
TGGAAATGATTGAGATGACT+AGG | + | chr4_1:6589737-6589756 | None:intergenic | 35.0% | |
TTTCACTAATATCGGTCAGA+TGG | - | chr4_1:6589890-6589909 | Msa0532500:intron | 35.0% | |
TTCACTCACAACTAATGCAT+TGG | - | chr4_1:6589965-6589984 | Msa0532500:intron | 35.0% | |
TCACTCACAACTAATGCATT+GGG | - | chr4_1:6589966-6589985 | Msa0532500:intron | 35.0% | |
ACAACAAGAAATGGAAGTCT+TGG | - | chr4_1:6590032-6590051 | Msa0532500:intron | 35.0% | |
TGACCCCTATTCATATTATC+TGG | + | chr4_1:6590065-6590084 | None:intergenic | 35.0% | |
GTCATCTTGATTACTTCTAC+TGG | - | chr4_1:6590081-6590100 | Msa0532500:intron | 35.0% | |
AATTGCTTAGATAGAGTCGT+AGG | - | chr4_1:6590288-6590307 | Msa0532500:five_prime_UTR | 35.0% | |
! | AACCTGCAAATATTTCTGTG+TGG | - | chr4_1:6590326-6590345 | Msa0532500:five_prime_UTR | 35.0% |
ATCCACACAGAAATATTTGC+AGG | + | chr4_1:6590331-6590350 | None:intergenic | 35.0% | |
! | TTCCATCTTTTGTTCTCTGG+TGG | + | chr4_1:6586578-6586597 | None:intergenic | 40.0% |
ATGGGCAAAGACAAAACTAG+TGG | + | chr4_1:6586619-6586638 | None:intergenic | 40.0% | |
CAATGCGGAATTCAGAACAT+GGG | + | chr4_1:6586637-6586656 | None:intergenic | 40.0% | |
CTTCGCTACCGACAAATTAA+AGG | + | chr4_1:6587144-6587163 | None:intergenic | 40.0% | |
!! | AAAGCATGCCGCTTTATTCT+CGG | - | chr4_1:6587311-6587330 | Msa0532500:CDS | 40.0% |
GACCGTAGTATTTAAGCACA+TGG | - | chr4_1:6587396-6587415 | Msa0532500:CDS | 40.0% | |
TGTGAAAGATTGGCGTACTA+TGG | - | chr4_1:6587626-6587645 | Msa0532500:intron | 40.0% | |
CTATGGCATGAGTACAAACT+TGG | - | chr4_1:6587643-6587662 | Msa0532500:intron | 40.0% | |
CTGCAAATACTGTCACAACT+TGG | - | chr4_1:6587708-6587727 | Msa0532500:intron | 40.0% | |
AATACTGTCACAACTTGGTC+GGG | - | chr4_1:6587713-6587732 | Msa0532500:intron | 40.0% | |
TGTTACATCACACCATTGCT+TGG | - | chr4_1:6587740-6587759 | Msa0532500:CDS | 40.0% | |
ATGCATACTTGGGAAGATAC+TGG | - | chr4_1:6587777-6587796 | Msa0532500:CDS | 40.0% | |
! | AGTTGTTTCCATAAGCACTC+CGG | + | chr4_1:6588581-6588600 | None:intergenic | 40.0% |
TCGTTGTTTGTGTACTTTCC+AGG | - | chr4_1:6588630-6588649 | Msa0532500:intron | 40.0% | |
CGTTGTTTGTGTACTTTCCA+GGG | - | chr4_1:6588631-6588650 | Msa0532500:intron | 40.0% | |
TTTGTGTACTTTCCAGGGAA+TGG | - | chr4_1:6588636-6588655 | Msa0532500:intron | 40.0% | |
!! | ATGTTAAAAGTGCCATTCCC+TGG | + | chr4_1:6588651-6588670 | None:intergenic | 40.0% |
CACCCATTAGTATCACATGA+AGG | + | chr4_1:6588700-6588719 | None:intergenic | 40.0% | |
TACTTGATTGCACTTGGAAC+TGG | - | chr4_1:6588763-6588782 | Msa0532500:intron | 40.0% | |
GCACCAAAAGATGAAACACA+CGG | + | chr4_1:6588799-6588818 | None:intergenic | 40.0% | |
GATACAGATGAATGTCGGAT+GGG | - | chr4_1:6588933-6588952 | Msa0532500:intron | 40.0% | |
ATACAGATGAATGTCGGATG+GGG | - | chr4_1:6588934-6588953 | Msa0532500:intron | 40.0% | |
GTTGCAGCATTTAGGAAACT+TGG | - | chr4_1:6589081-6589100 | Msa0532500:intron | 40.0% | |
AATCTAACATCAAAGGGAGC+CGG | - | chr4_1:6589154-6589173 | Msa0532500:CDS | 40.0% | |
! | TTTCCCTGATTTCAGGTGTT+TGG | - | chr4_1:6589350-6589369 | Msa0532500:intron | 40.0% |
! | CGGTAAATCTTTTATCCGGT+CGG | + | chr4_1:6589400-6589419 | None:intergenic | 40.0% |
AAGATTTACCGAATCCATGG+AGG | - | chr4_1:6589409-6589428 | Msa0532500:intron | 40.0% | |
GGAACCATGTTTGTGTTACA+AGG | - | chr4_1:6589531-6589550 | Msa0532500:intron | 40.0% | |
GTTGCCTTGTAACACAAACA+TGG | + | chr4_1:6589538-6589557 | None:intergenic | 40.0% | |
TGTGTTACAAGGCAACACAA+TGG | - | chr4_1:6589542-6589561 | Msa0532500:intron | 40.0% | |
!! | GACACTTAGAGTGTCGAAAA+GGG | + | chr4_1:6589613-6589632 | None:intergenic | 40.0% |
!! | TGACACTTAGAGTGTCGAAA+AGG | + | chr4_1:6589614-6589633 | None:intergenic | 40.0% |
ACACTCTAAGTGTCATCTTC+TGG | - | chr4_1:6589619-6589638 | Msa0532500:CDS | 40.0% | |
CACTCTAAGTGTCATCTTCT+GGG | - | chr4_1:6589620-6589639 | Msa0532500:CDS | 40.0% | |
CGGTGAACTTTCTTCCAAAA+GGG | + | chr4_1:6589671-6589690 | None:intergenic | 40.0% | |
!! | CCTTTTGGAAGAAAGTTCAC+CGG | - | chr4_1:6589669-6589688 | Msa0532500:CDS | 40.0% |
CAGCTTCAAAGAATCGGAAT+CGG | - | chr4_1:6589711-6589730 | Msa0532500:CDS | 40.0% | |
CTCAATCATTTCCATGATCG+TGG | - | chr4_1:6589743-6589762 | Msa0532500:five_prime_UTR | 40.0% | |
! | GGTCAGATGGAGTTCTTTTA+TGG | - | chr4_1:6589903-6589922 | Msa0532500:intron | 40.0% |
! | GATGGAGTTCTTTTATGGTC+AGG | - | chr4_1:6589908-6589927 | Msa0532500:intron | 40.0% |
CACAAACTTCTCATAGCATC+AGG | + | chr4_1:6589936-6589955 | None:intergenic | 40.0% | |
CAAGAAATGGAAGTCTTGGT+TGG | - | chr4_1:6590036-6590055 | Msa0532500:intron | 40.0% | |
GTGAGAAATGTACCTAGATG+AGG | - | chr4_1:6590190-6590209 | Msa0532500:intron | 40.0% | |
CGACTCTATCTAAGCAATTC+AGG | + | chr4_1:6590287-6590306 | None:intergenic | 40.0% | |
AGCCACCAGAGAACAAAAGA+TGG | - | chr4_1:6586573-6586592 | Msa0532500:three_prime_UTR | 45.0% | |
CCAATGCGGAATTCAGAACA+TGG | + | chr4_1:6586638-6586657 | None:intergenic | 45.0% | |
! | CCATGTTCTGAATTCCGCAT+TGG | - | chr4_1:6586635-6586654 | Msa0532500:three_prime_UTR | 45.0% |
GCTGGTGTGAATGAAGAAGA+TGG | - | chr4_1:6587218-6587237 | Msa0532500:CDS | 45.0% | |
! | CCTGTCTTTTTCTTGTTGGC+AGG | + | chr4_1:6587284-6587303 | None:intergenic | 45.0% |
CCTGCCAACAAGAAAAAGAC+AGG | - | chr4_1:6587281-6587300 | Msa0532500:CDS | 45.0% | |
GTGCTTAAATACTACGGTCC+AGG | + | chr4_1:6587395-6587414 | None:intergenic | 45.0% | |
CTCGTAGACATAGGCACAAT+TGG | - | chr4_1:6587473-6587492 | Msa0532500:CDS | 45.0% | |
CTGCATTTCCAAGTCCGTAA+CGG | + | chr4_1:6587685-6587704 | None:intergenic | 45.0% | |
GCTAAAAAGGCTCCAAGCAA+TGG | + | chr4_1:6587755-6587774 | None:intergenic | 45.0% | |
GAATTGTACTCTCGACAGAC+AGG | + | chr4_1:6588052-6588071 | None:intergenic | 45.0% | |
AAGCATCTGTGAGACTGTTC+CGG | - | chr4_1:6588559-6588578 | Msa0532500:intron | 45.0% | |
! | ACATTTTCCGCAATTGCACC+TGG | - | chr4_1:6588667-6588686 | Msa0532500:intron | 45.0% |
CTTTAGTCCAGGTGCAATTG+CGG | + | chr4_1:6588677-6588696 | None:intergenic | 45.0% | |
! | TCACATGAAGGCTTTAGTCC+AGG | + | chr4_1:6588688-6588707 | None:intergenic | 45.0% |
GCACTCTACTTGATTGCACT+TGG | - | chr4_1:6588757-6588776 | Msa0532500:intron | 45.0% | |
TTGATTGCACTTGGAACTGG+TGG | - | chr4_1:6588766-6588785 | Msa0532500:intron | 45.0% | |
ATGAAAACGACGAGACTGAG+AGG | - | chr4_1:6588830-6588849 | Msa0532500:intron | 45.0% | |
GGATACAGATGAATGTCGGA+TGG | - | chr4_1:6588932-6588951 | Msa0532500:intron | 45.0% | |
AAAAGGGAGAGAGAAGCTGA+TGG | + | chr4_1:6589597-6589616 | None:intergenic | 45.0% | |
TTCCAAAAGGGACGATGAGA+CGG | + | chr4_1:6589659-6589678 | None:intergenic | 45.0% | |
CCGGTGAACTTTCTTCCAAA+AGG | + | chr4_1:6589672-6589691 | None:intergenic | 45.0% | |
ATCATTTCCATGATCGTGGC+CGG | - | chr4_1:6589747-6589766 | Msa0532500:five_prime_UTR | 45.0% | |
!! | TGTTTTTGCGGACAATGTCG+AGG | + | chr4_1:6589791-6589810 | None:intergenic | 45.0% |
CTTGCCAGAAGATCGACATA+GGG | + | chr4_1:6589836-6589855 | None:intergenic | 45.0% | |
ACTTGCCAGAAGATCGACAT+AGG | + | chr4_1:6589837-6589856 | None:intergenic | 45.0% | |
ATCAAAGGCTTCAACTCCTC+AGG | + | chr4_1:6590221-6590240 | None:intergenic | 45.0% | |
CTATGTCTACGAGTGCAGAG+TGG | + | chr4_1:6587466-6587485 | None:intergenic | 50.0% | |
CACTCTGCACTCGTAGACAT+AGG | - | chr4_1:6587464-6587483 | Msa0532500:CDS | 50.0% | |
CTTGAAGACCGTTACGGACT+TGG | - | chr4_1:6587674-6587693 | Msa0532500:intron | 50.0% | |
! | AGACTGTTCCGGAGTGCTTA+TGG | - | chr4_1:6588570-6588589 | Msa0532500:intron | 50.0% |
CAGTTTGTCCTGATGTCGGA+TGG | + | chr4_1:6588723-6588742 | None:intergenic | 50.0% | |
TCCGACATCAGGACAAACTG+CGG | - | chr4_1:6588723-6588742 | Msa0532500:intron | 50.0% | |
! | ACTCATTGCTTCCTCGGTGT+TGG | - | chr4_1:6588906-6588925 | Msa0532500:intron | 50.0% |
!! | TTGCTTCCTCGGTGTTGGTT+TGG | - | chr4_1:6588911-6588930 | Msa0532500:intron | 50.0% |
CTGTATCCAAACCAACACCG+AGG | + | chr4_1:6588920-6588939 | None:intergenic | 50.0% | |
AGATGAATGTCGGATGGGGA+TGG | - | chr4_1:6588938-6588957 | Msa0532500:intron | 50.0% | |
GATGAATGTCGGATGGGGAT+GGG | - | chr4_1:6588939-6588958 | Msa0532500:intron | 50.0% | |
ATGAATGTCGGATGGGGATG+GGG | - | chr4_1:6588940-6588959 | Msa0532500:intron | 50.0% | |
GCGATAACCATTGCAACTCC+AGG | + | chr4_1:6588976-6588995 | None:intergenic | 50.0% | |
CTTGTAAGAGGACTTCCACC+AGG | + | chr4_1:6589045-6589064 | None:intergenic | 50.0% | |
CTGGTGGAAGTCCTCTTACA+AGG | - | chr4_1:6589043-6589062 | Msa0532500:intron | 50.0% | |
CAGTAGAGACAGAATCCGAC+CGG | - | chr4_1:6589382-6589401 | Msa0532500:intron | 50.0% | |
TCGTTCGTTTACTCCCCGTT+TGG | - | chr4_1:6589469-6589488 | Msa0532500:intron | 50.0% | |
CGTTCGTTTACTCCCCGTTT+GGG | - | chr4_1:6589470-6589489 | Msa0532500:intron | 50.0% | |
CTATCAGTGATGCCCAAACG+GGG | + | chr4_1:6589485-6589504 | None:intergenic | 50.0% | |
GCTATCAGTGATGCCCAAAC+GGG | + | chr4_1:6589486-6589505 | None:intergenic | 50.0% | |
GGCTATCAGTGATGCCCAAA+CGG | + | chr4_1:6589487-6589506 | None:intergenic | 50.0% | |
AAGTTCACCGGCCATGAACA+CGG | - | chr4_1:6589681-6589700 | Msa0532500:CDS | 50.0% | |
TGTGAATCCGTGTTCATGGC+CGG | + | chr4_1:6589691-6589710 | None:intergenic | 50.0% | |
GCTGTGTGAATCCGTGTTCA+TGG | + | chr4_1:6589695-6589714 | None:intergenic | 50.0% | |
TCATTTCCATGATCGTGGCC+GGG | - | chr4_1:6589748-6589767 | Msa0532500:five_prime_UTR | 50.0% | |
!! | GCGGATGACTTCTAGAATCC+CGG | + | chr4_1:6589769-6589788 | None:intergenic | 50.0% |
! | TTTTGCGGACAATGTCGAGG+CGG | + | chr4_1:6589788-6589807 | None:intergenic | 50.0% |
CCAGAAGATCGACATAGGGA+TGG | + | chr4_1:6589832-6589851 | None:intergenic | 50.0% | |
CCATCCCTATGTCGATCTTC+TGG | - | chr4_1:6589829-6589848 | Msa0532500:intron | 50.0% | |
GTACCGCAGTATTTCCTCGT+AGG | - | chr4_1:6589855-6589874 | Msa0532500:intron | 50.0% | |
GCACCTACGAGGAAATACTG+CGG | + | chr4_1:6589861-6589880 | None:intergenic | 50.0% | |
CCTCAGGTTACTCCTCATCT+AGG | + | chr4_1:6590205-6590224 | None:intergenic | 50.0% | |
CCTAGATGAGGAGTAACCTG+AGG | - | chr4_1:6590202-6590221 | Msa0532500:intron | 50.0% | |
! | AATGGGTGCCATCCGACATC+AGG | - | chr4_1:6588712-6588731 | Msa0532500:intron | 55.0% |
GCCGCAGTTTGTCCTGATGT+CGG | + | chr4_1:6588727-6588746 | None:intergenic | 55.0% | |
CGGTGCACTCATTGCTTCCT+CGG | - | chr4_1:6588900-6588919 | Msa0532500:intron | 55.0% | |
! | TGGAGTGCCTGGAGTTGCAA+TGG | - | chr4_1:6588966-6588985 | Msa0532500:intron | 55.0% |
GTGCAGAGCCTCCATGGATT+CGG | + | chr4_1:6589420-6589439 | None:intergenic | 55.0% | |
GTTACTGTGCAGAGCCTCCA+TGG | + | chr4_1:6589426-6589445 | None:intergenic | 55.0% | |
AAGTGTCATCTTCTGGGCCC+CGG | - | chr4_1:6589626-6589645 | Msa0532500:CDS | 55.0% | |
ACGATGAGACGGTCGTAGAC+CGG | + | chr4_1:6589648-6589667 | None:intergenic | 55.0% | |
! | GACCGTCTCATCGTCCCTTT+TGG | - | chr4_1:6589654-6589673 | Msa0532500:CDS | 55.0% |
TAGAATCCCGGCCACGATCA+TGG | + | chr4_1:6589757-6589776 | None:intergenic | 55.0% | |
AAACTTCTGCGGCACCTACG+AGG | + | chr4_1:6589872-6589891 | None:intergenic | 55.0% | |
! | GTCGGATGGGGATGGGGTTT+TGG | - | chr4_1:6588946-6588965 | Msa0532500:intron | 60.0% |
!!! | GGATGGGGTTTTGGAGTGCC+TGG | - | chr4_1:6588955-6588974 | Msa0532500:intron | 60.0% |
GATGAGACGGTCGTAGACCG+GGG | + | chr4_1:6589646-6589665 | None:intergenic | 60.0% | |
CGATGAGACGGTCGTAGACC+GGG | + | chr4_1:6589647-6589666 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 6586563 | 6590365 | 6586563 | ID=Msa0532500;Name=Msa0532500 |
chr4_1 | mRNA | 6586563 | 6590365 | 6586563 | ID=Msa0532500-mRNA-1;Parent=Msa0532500;Name=Msa0532500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=181|0.75|0.6|1|0.75|0.6|5|172|545 |
chr4_1 | exon | 6586563 | 6587563 | 6586563 | ID=Msa0532500-mRNA-1:exon:2373;Parent=Msa0532500-mRNA-1 |
chr4_1 | exon | 6587726 | 6588194 | 6587726 | ID=Msa0532500-mRNA-1:exon:2372;Parent=Msa0532500-mRNA-1 |
chr4_1 | exon | 6589110 | 6589313 | 6589110 | ID=Msa0532500-mRNA-1:exon:2371;Parent=Msa0532500-mRNA-1 |
chr4_1 | exon | 6589596 | 6589802 | 6589596 | ID=Msa0532500-mRNA-1:exon:2370;Parent=Msa0532500-mRNA-1 |
chr4_1 | exon | 6590256 | 6590365 | 6590256 | ID=Msa0532500-mRNA-1:exon:2369;Parent=Msa0532500-mRNA-1 |
chr4_1 | five_prime_UTR | 6590256 | 6590365 | 6590256 | ID=Msa0532500-mRNA-1:five_prime_utr;Parent=Msa0532500-mRNA-1 |
chr4_1 | five_prime_UTR | 6589732 | 6589802 | 6589732 | ID=Msa0532500-mRNA-1:five_prime_utr;Parent=Msa0532500-mRNA-1 |
chr4_1 | CDS | 6589596 | 6589731 | 6589596 | ID=Msa0532500-mRNA-1:cds;Parent=Msa0532500-mRNA-1 |
chr4_1 | CDS | 6589110 | 6589313 | 6589110 | ID=Msa0532500-mRNA-1:cds;Parent=Msa0532500-mRNA-1 |
chr4_1 | CDS | 6587726 | 6588194 | 6587726 | ID=Msa0532500-mRNA-1:cds;Parent=Msa0532500-mRNA-1 |
chr4_1 | CDS | 6586735 | 6587563 | 6586735 | ID=Msa0532500-mRNA-1:cds;Parent=Msa0532500-mRNA-1 |
chr4_1 | three_prime_UTR | 6586563 | 6586734 | 6586563 | ID=Msa0532500-mRNA-1:three_prime_utr;Parent=Msa0532500-mRNA-1 |
Gene Sequence |
Protein sequence |