AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0629560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629560 MtrunA17_Chr4g0005901 98.269 520 9 0 1 520 58 577 0.0 1056
Msa0629560 MtrunA17_Chr7g0241741 85.271 516 76 0 1 516 48 563 0.0 924
Msa0629560 MtrunA17_Chr3g0104011 70.213 517 152 2 1 515 48 564 0.0 748
Msa0629560 MtrunA17_Chr8g0375311 61.996 521 193 5 1 517 66 585 0.0 664
Msa0629560 MtrunA17_Chr8g0375291 61.523 512 192 5 1 508 66 576 0.0 650
Msa0629560 MtrunA17_Chr8g0375341 53.551 521 237 5 1 517 66 585 0.0 578
Msa0629560 MtrunA17_Chr8g0375351 53.359 521 238 5 1 517 66 585 0.0 575
Msa0629560 MtrunA17_Chr8g0375321 51.823 521 246 5 1 517 63 582 0.0 565
Msa0629560 MtrunA17_Chr8g0375361 53.728 523 237 5 1 519 65 586 0.0 559
Msa0629560 MtrunA17_Chr8g0375331 51.823 521 246 5 1 517 50 569 0.0 553
Msa0629560 MtrunA17_Chr3g0142101 47.876 518 256 6 1 515 61 567 1.20e-167 487
Msa0629560 MtrunA17_Chr5g0422881 47.228 523 265 8 2 516 47 566 3.00e-165 481
Msa0629560 MtrunA17_Chr7g0261811 44.423 520 276 3 1 513 53 566 1.58e-159 466
Msa0629560 MtrunA17_Chr7g0261881 44.530 521 276 4 1 514 53 567 2.73e-156 458
Msa0629560 MtrunA17_Chr3g0142091 46.833 521 259 8 1 515 52 560 2.50e-155 455
Msa0629560 MtrunA17_Chr7g0255621 43.511 524 286 5 4 519 49 570 5.67e-154 452
Msa0629560 MtrunA17_Chr7g0261791 42.586 526 288 4 1 518 55 574 1.28e-153 451
Msa0629560 MtrunA17_Chr5g0399071 46.080 523 270 8 1 514 51 570 2.64e-152 447
Msa0629560 MtrunA17_Chr7g0217461 46.679 527 259 8 4 515 53 572 4.81e-152 447
Msa0629560 MtrunA17_Chr7g0261851 43.977 523 280 3 1 516 54 570 6.92e-151 444
Msa0629560 MtrunA17_Chr1g0213711 42.383 512 284 5 4 511 50 554 1.44e-149 441
Msa0629560 MtrunA17_Chr7g0255601 43.570 521 282 6 3 514 55 572 2.28e-147 436
Msa0629560 MtrunA17_Chr7g0261771 41.075 521 294 3 1 514 57 571 2.60e-147 435
Msa0629560 MtrunA17_Chr3g0114501 43.243 518 288 4 1 515 48 562 1.51e-146 433
Msa0629560 MtrunA17_Chr5g0399061 43.130 524 284 7 1 514 53 572 2.39e-146 432
Msa0629560 MtrunA17_Chr4g0054891 44.163 514 273 6 4 509 139 646 4.36e-144 429
Msa0629560 MtrunA17_Chr5g0400371 43.077 520 285 5 1 511 138 655 1.14e-143 428
Msa0629560 MtrunA17_Chr1g0187241 42.146 522 287 6 1 514 52 566 3.06e-143 424
Msa0629560 MtrunA17_Chr4g0056431 44.677 526 276 7 1 514 51 573 1.06e-142 423
Msa0629560 MtrunA17_Chr3g0112671 42.885 520 283 7 1 519 59 565 6.59e-142 421
Msa0629560 MtrunA17_Chr1g0166711 43.462 520 282 6 1 514 51 564 2.88e-141 419
Msa0629560 MtrunA17_Chr3g0077151 42.337 522 267 7 1 517 54 546 2.34e-140 416
Msa0629560 MtrunA17_Chr7g0218851 41.973 517 287 7 1 511 72 581 2.88e-140 417
Msa0629560 MtrunA17_Chr7g0214461 41.221 524 295 8 1 520 104 618 4.15e-140 418
Msa0629560 MtrunA17_Chr1g0166741 43.000 500 269 5 1 495 53 541 8.29e-139 413
Msa0629560 MtrunA17_Chr4g0008651 40.962 520 299 6 1 518 60 573 6.93e-138 411
Msa0629560 MtrunA17_Chr1g0166771 42.829 502 271 5 1 497 17 507 9.88e-138 409
Msa0629560 MtrunA17_Chr8g0353031 41.966 529 274 6 1 516 44 552 2.19e-136 406
Msa0629560 MtrunA17_Chr7g0255611 39.313 524 308 5 4 519 58 579 2.80e-136 407
Msa0629560 MtrunA17_Chr1g0166791 40.385 520 299 5 1 514 50 564 6.34e-135 403
Msa0629560 MtrunA17_Chr7g0214731 41.243 531 290 9 1 514 87 612 1.03e-134 404
Msa0629560 MtrunA17_Chr4g0014871 40.812 517 280 7 4 515 59 554 1.67e-133 399
Msa0629560 MtrunA17_Chr5g0415791 41.874 523 289 7 4 514 58 577 5.83e-133 399
Msa0629560 MtrunA17_Chr7g0240381 39.539 521 301 6 1 519 55 563 6.89e-133 398
Msa0629560 MtrunA17_Chr4g0014781 40.891 516 280 6 4 515 58 552 2.22e-131 393
Msa0629560 MtrunA17_Chr3g0112611 40.655 519 300 7 1 516 58 571 4.07e-131 394
Msa0629560 MtrunA17_Chr4g0014791 41.279 516 274 7 4 514 58 549 9.59e-131 391
Msa0629560 MtrunA17_Chr4g0014841 41.085 516 277 7 4 515 58 550 1.12e-130 391
Msa0629560 MtrunA17_Chr7g0261661 42.702 459 250 3 63 514 1 453 1.96e-130 389
Msa0629560 MtrunA17_Chr4g0063591 45.524 525 264 11 1 515 48 560 4.80e-130 390
Msa0629560 MtrunA17_Chr4g0014801 41.085 516 279 6 4 515 58 552 1.94e-128 385
Msa0629560 MtrunA17_Chr4g0011471 41.267 521 290 8 1 511 42 556 2.57e-128 385
Msa0629560 MtrunA17_Chr2g0284701 40.583 515 283 10 20 514 77 588 4.34e-127 384
Msa0629560 MtrunA17_Chr7g0271221 38.996 518 295 9 4 514 43 546 1.41e-125 379
Msa0629560 MtrunA17_Chr5g0439381 42.776 526 273 10 1 518 54 559 3.69e-124 375
Msa0629560 MtrunA17_Chr4g0059991 37.977 524 311 7 4 514 51 573 7.81e-123 372
Msa0629560 MtrunA17_Chr4g0059971 36.641 524 319 6 4 515 63 585 3.49e-122 370
Msa0629560 MtrunA17_Chr3g0082631 44.907 432 224 5 95 515 32 460 4.68e-121 363
Msa0629560 MtrunA17_Chr1g0193391 39.243 502 285 10 18 514 60 546 4.78e-120 365
Msa0629560 MtrunA17_Chr3g0133341 40.381 525 290 9 2 516 41 552 5.02e-120 364
Msa0629560 MtrunA17_Chr1g0166731 42.702 459 251 6 62 514 9 461 1.76e-119 360
Msa0629560 MtrunA17_Chr2g0276751 38.803 518 291 9 3 514 66 563 2.96e-118 360
Msa0629560 MtrunA17_Chr4g0014861 40.835 431 236 5 90 515 13 429 3.89e-116 350
Msa0629560 MtrunA17_Chr8g0362711 39.771 523 303 8 2 514 51 571 1.30e-115 353
Msa0629560 MtrunA17_Chr4g0059981 36.090 532 319 10 3 518 59 585 8.11e-115 352
Msa0629560 MtrunA17_Chr8g0379971 39.091 550 303 10 1 518 46 595 4.60e-112 345
Msa0629560 MtrunA17_Chr4g0069581 39.715 491 274 11 32 515 43 518 1.78e-111 342
Msa0629560 MtrunA17_Chr8g0362801 39.954 438 255 4 87 519 32 466 4.85e-111 338
Msa0629560 MtrunA17_Chr5g0415961 37.405 524 315 8 2 514 51 572 6.95e-111 341
Msa0629560 MtrunA17_Chr8g0379991 38.283 559 300 9 1 514 6 564 8.46e-109 335
Msa0629560 MtrunA17_Chr8g0362781 34.528 530 333 5 1 517 56 584 1.06e-108 335
Msa0629560 MtrunA17_Chr1g0147631 37.548 522 301 9 4 511 54 564 2.17e-104 325
Msa0629560 MtrunA17_Chr4g0011041 35.878 524 316 10 1 511 62 578 8.42e-104 323
Msa0629560 MtrunA17_Chr8g0390331 37.405 524 304 10 1 511 41 553 1.73e-102 319
Msa0629560 MtrunA17_Chr1g0157601 35.203 517 319 9 4 511 44 553 9.62e-102 317
Msa0629560 MtrunA17_Chr2g0331521 35.057 522 316 10 4 511 51 563 1.21e-100 315
Msa0629560 MtrunA17_Chr7g0261751 37.444 446 230 6 1 403 57 496 7.88e-100 311
Msa0629560 MtrunA17_Chr6g0451841 37.148 533 289 9 1 514 31 536 2.78e-99 310
Msa0629560 MtrunA17_Chr4g0060001 35.838 519 317 9 3 511 57 569 6.34e-99 311
Msa0629560 MtrunA17_Chr2g0331481 35.893 521 313 11 4 511 54 566 2.46e-97 308
Msa0629560 MtrunA17_Chr1g0157611 35.125 521 314 10 4 511 45 554 2.02e-96 303
Msa0629560 MtrunA17_Chr2g0331471 35.509 521 315 11 4 511 117 629 5.83e-96 306
Msa0629560 MtrunA17_Chr7g0240271 33.270 523 336 7 4 516 53 572 3.36e-95 301
Msa0629560 MtrunA17_Chr1g0177591 36.187 514 302 11 4 511 71 564 1.14e-93 296
Msa0629560 MtrunA17_Chr1g0157621 33.915 516 326 9 4 511 9 517 1.47e-93 295
Msa0629560 MtrunA17_Chr2g0331511 33.911 519 326 10 4 511 50 562 4.32e-92 294
Msa0629560 MtrunA17_Chr7g0240281 34.334 533 321 12 3 516 52 574 2.78e-90 288
Msa0629560 MtrunA17_Chr4g0003761 32.948 519 329 8 4 511 59 569 1.22e-87 281
Msa0629560 MtrunA17_Chr5g0415841 34.110 472 293 8 63 520 1 468 9.73e-87 275
Msa0629560 MtrunA17_Chr2g0331461 32.314 523 335 8 1 511 51 566 2.06e-83 271
Msa0629560 MtrunA17_Chr7g0235521 33.405 464 296 7 63 516 1 461 3.71e-83 266
Msa0629560 MtrunA17_Chr7g0240211 33.621 464 295 7 63 516 1 461 3.75e-83 266
Msa0629560 MtrunA17_Chr7g0240181 33.621 464 295 7 63 516 1 461 4.40e-83 266
Msa0629560 MtrunA17_Chr1g0177611 36.923 455 261 11 63 511 1 435 7.41e-83 264
Msa0629560 MtrunA17_Chr7g0240131 33.190 464 297 7 63 516 1 461 8.30e-82 263
Msa0629560 MtrunA17_Chr3g0142121 45.725 269 135 4 247 515 12 269 2.06e-79 250
Msa0629560 MtrunA17_Chr3g0142111 49.804 255 125 3 1 252 72 326 5.46e-79 251
Msa0629560 MtrunA17_Chr2g0325951 31.478 521 330 8 4 516 48 549 1.51e-78 256
Msa0629560 MtrunA17_Chr1g0177631 36.123 454 266 10 63 511 1 435 2.84e-78 252
Msa0629560 MtrunA17_Chr7g0261731 41.438 292 159 2 1 286 57 342 1.79e-77 247
Msa0629560 MtrunA17_Chr2g0325961 31.740 523 327 9 4 516 48 550 1.06e-75 248
Msa0629560 MtrunA17_Chr7g0240151 32.328 464 283 8 63 516 1 443 1.50e-75 246
Msa0629560 MtrunA17_Chr2g0326211 29.924 528 329 10 4 516 48 549 8.20e-71 236
Msa0629560 MtrunA17_Chr3g0112631 40.433 277 161 3 245 519 3 277 1.06e-68 222
Msa0629560 MtrunA17_Chr4g0060071 39.249 293 167 4 224 514 15 298 4.54e-66 216
Msa0629560 MtrunA17_Chr7g0234151 32.222 450 271 8 62 511 3 418 6.09e-65 216
Msa0629560 MtrunA17_Chr7g0234181 31.991 447 270 8 65 511 1 413 8.44e-64 213
Msa0629560 MtrunA17_Chr7g0234381 31.556 450 274 8 62 511 3 418 5.61e-63 211
Msa0629560 MtrunA17_Chr7g0261721 41.294 201 117 1 315 514 1 201 1.16e-49 170
Msa0629560 MtrunA17_Chr3g0112651 41.837 196 110 3 51 245 10 202 3.44e-42 150
Msa0629560 MtrunA17_Chr1g0147591 37.374 198 112 4 100 291 9 200 1.79e-35 131
Msa0629560 MtrunA17_Chr4g0060061 48.696 115 59 0 89 203 14 128 6.48e-32 119
Msa0629560 MtrunA17_Chr7g0261831 38.365 159 91 2 202 359 3 155 2.73e-30 117
Msa0629560 MtrunA17_Chr2g0326221 29.289 239 141 4 278 516 15 225 5.25e-28 111
Msa0629560 MtrunA17_Chr7g0261821 45.312 64 35 0 452 515 1 64 5.09e-15 69.7
Msa0629560 MtrunA17_Chr1g0147581 33.333 123 72 3 369 488 1 116 2.85e-13 66.6
Msa0629560 MtrunA17_Chr1g0166721 47.541 61 32 0 1 61 51 111 7.24e-13 66.2
Msa0629560 MtrunA17_Chr8g0382591 35.577 104 63 2 248 347 6 109 5.70e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0629560 AT3G54140.1 75.435 517 125 2 1 515 48 564 0.0 817
Msa0629560 AT3G54140.2 75.435 517 125 2 1 515 48 564 0.0 817
Msa0629560 AT5G01180.2 72.587 518 141 1 1 517 49 566 0.0 784
Msa0629560 AT5G01180.3 72.587 518 141 1 1 517 49 566 0.0 784
Msa0629560 AT5G01180.1 72.587 518 141 1 1 517 49 566 0.0 784
Msa0629560 AT2G02040.1 60.269 521 202 5 1 517 65 584 0.0 641
Msa0629560 AT1G62200.1 55.086 521 220 5 1 515 76 588 0.0 585
Msa0629560 AT1G62200.3 52.364 550 219 7 1 515 90 631 0.0 569
Msa0629560 AT1G62200.2 52.364 550 219 7 1 515 76 617 0.0 568
Msa0629560 AT2G02020.1 50.577 520 213 8 1 516 66 545 0.0 521
Msa0629560 AT1G68570.2 48.560 521 260 5 4 516 20 540 1.62e-160 468
Msa0629560 AT1G68570.1 48.560 521 260 5 4 516 50 570 6.55e-160 468
Msa0629560 AT2G02020.2 46.923 520 211 9 1 516 66 524 7.04e-159 462
Msa0629560 AT5G19640.1 43.595 523 271 8 1 518 83 586 5.94e-147 435
Msa0629560 AT4G21680.1 44.275 524 276 8 4 515 55 574 2.91e-143 425
Msa0629560 AT2G40460.1 41.006 517 293 5 1 514 48 555 5.09e-139 414
Msa0629560 AT2G26690.3 45.543 516 262 8 1 508 3 507 8.37e-139 411
Msa0629560 AT2G26690.2 45.543 516 262 8 1 508 15 519 1.17e-138 411
Msa0629560 AT1G32450.1 42.389 519 287 6 4 511 64 581 4.15e-138 412
Msa0629560 AT2G26690.1 45.543 516 262 8 1 508 48 552 4.72e-138 411
Msa0629560 AT1G12110.1 42.939 524 286 8 1 515 51 570 7.11e-138 411
Msa0629560 AT3G54450.1 40.076 524 291 7 1 516 36 544 1.91e-137 409
Msa0629560 AT2G37900.1 42.664 518 284 7 1 516 62 568 4.08e-134 401
Msa0629560 AT5G46050.1 41.075 521 293 5 1 514 51 564 2.97e-133 399
Msa0629560 AT2G37900.2 43.086 499 271 7 20 516 2 489 1.06e-132 394
Msa0629560 AT3G53960.1 41.731 520 294 8 1 516 61 575 2.00e-132 397
Msa0629560 AT5G13400.1 40.490 531 296 7 1 516 88 613 1.88e-131 395
Msa0629560 AT5G46040.1 40.883 521 294 5 1 514 51 564 1.25e-130 392
Msa0629560 AT1G69870.1 40.805 522 293 10 4 514 78 594 1.60e-129 390
Msa0629560 AT1G72130.1 39.197 523 273 9 1 515 49 534 9.14e-127 381
Msa0629560 AT1G22540.1 40.883 521 283 7 1 516 54 554 7.38e-126 379
Msa0629560 AT1G69850.1 40.335 538 288 9 2 514 50 579 7.76e-126 380
Msa0629560 AT1G59740.1 40.509 511 289 7 3 506 67 569 9.78e-126 380
Msa0629560 AT1G72140.1 38.476 525 284 5 1 515 58 553 3.91e-125 377
Msa0629560 AT1G27040.3 40.832 529 276 10 2 513 20 528 1.25e-124 375
Msa0629560 AT1G72125.1 41.300 523 283 8 1 516 53 558 5.42e-124 374
Msa0629560 AT1G27040.1 40.832 529 276 10 2 513 52 560 6.63e-124 374
Msa0629560 AT1G27040.2 41.021 529 275 9 2 513 48 556 6.69e-124 374
Msa0629560 AT3G21670.1 41.746 527 273 9 1 514 53 558 1.59e-122 372
Msa0629560 AT1G72120.1 39.048 525 294 5 1 519 53 557 6.83e-117 356
Msa0629560 AT5G46050.2 40.959 459 257 5 63 514 1 452 1.82e-115 349
Msa0629560 AT1G22550.1 38.346 532 294 7 1 519 54 564 9.34e-115 351
Msa0629560 AT1G33440.1 38.536 519 294 9 4 512 65 568 1.07e-113 349
Msa0629560 AT1G18880.1 36.604 530 316 10 2 516 44 568 1.16e-113 348
Msa0629560 AT1G52190.1 37.192 527 304 11 4 511 48 566 6.21e-113 347
Msa0629560 AT1G22570.2 38.158 532 296 8 1 519 17 528 1.71e-112 344
Msa0629560 AT1G22570.1 38.158 532 296 8 1 519 54 565 6.56e-112 343
Msa0629560 AT1G27080.1 36.792 530 300 11 1 514 38 548 1.80e-110 340
Msa0629560 AT1G27080.2 36.902 523 295 11 8 514 3 506 1.08e-109 337
Msa0629560 AT5G62730.2 37.453 534 286 9 2 515 22 527 4.14e-109 335
Msa0629560 AT5G62730.1 37.453 534 286 9 2 515 81 586 2.17e-108 335
Msa0629560 AT1G72130.2 38.249 434 229 7 90 515 14 416 3.42e-107 327
Msa0629560 AT1G72130.3 38.249 434 229 7 90 515 14 416 3.42e-107 327
Msa0629560 AT3G16180.1 37.571 527 299 13 4 511 50 565 4.71e-106 329
Msa0629560 AT5G14940.1 34.766 535 304 11 1 514 31 541 9.43e-106 327
Msa0629560 AT5G62680.1 34.848 528 324 8 3 514 69 592 1.76e-102 321
Msa0629560 AT3G47960.1 35.429 525 323 9 3 514 87 608 4.34e-102 320
Msa0629560 AT5G28470.2 32.952 525 335 10 4 518 44 561 1.21e-95 301
Msa0629560 AT3G01350.1 33.396 536 310 12 1 509 31 546 1.11e-92 293
Msa0629560 AT5G28470.1 32.762 525 334 11 4 518 44 559 1.14e-92 293
Msa0629560 AT1G69860.1 34.100 522 324 9 4 518 45 553 7.07e-91 289
Msa0629560 AT3G45660.1 31.801 522 326 9 4 518 48 546 7.35e-90 286
Msa0629560 AT3G45660.3 31.801 522 326 9 4 518 48 546 7.35e-90 286
Msa0629560 AT3G45660.2 31.801 522 326 9 4 518 69 567 1.11e-89 286
Msa0629560 AT3G45650.1 31.731 520 325 9 4 516 49 545 1.82e-88 283
Msa0629560 AT3G45720.1 31.154 520 328 11 4 516 46 542 1.14e-86 278
Msa0629560 AT3G25260.1 32.422 512 302 8 2 511 46 515 1.90e-86 276
Msa0629560 AT3G45680.1 31.346 520 328 11 4 516 47 544 2.74e-85 274
Msa0629560 AT3G45650.2 30.403 546 324 10 4 516 49 571 1.58e-83 270
Msa0629560 AT3G25280.1 32.681 511 304 7 4 511 48 521 5.88e-82 265
Msa0629560 AT3G45710.1 29.423 520 339 10 4 516 48 546 3.30e-76 250
Msa0629560 AT3G45700.1 30.171 527 323 14 4 518 43 536 7.67e-76 249
Msa0629560 AT3G45690.1 28.433 517 306 12 4 516 45 501 1.58e-65 221
Msa0629560 AT2G38100.2 26.070 514 344 9 5 512 2 485 1.28e-49 178
Msa0629560 AT2G38100.1 26.070 514 344 9 5 512 18 501 1.92e-49 178
Msa0629560 AT2G38100.3 26.070 514 344 9 5 512 24 507 2.78e-49 178
Msa0629560 AT5G11570.1 34.940 249 152 4 264 511 237 476 2.29e-38 147
Msa0629560 AT5G11570.1 37.719 228 120 8 4 222 40 254 1.59e-35 139

Find 133 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGTGTGTTCAAGTTTC+CGG 0.188591 4_3:+10416948 None:intergenic
TCAAGTAAAGTGCTATAAAA+AGG 0.209455 4_3:+10417374 None:intergenic
GTCGGATGGGGATGGGGTTT+TGG 0.221483 4_3:-10417175 Msa0629560:CDS
ACACTCTAAGTGTCATCTTC+TGG 0.233776 4_3:-10416504 Msa0629560:CDS
AAACCGTGTGTTTCATCTTT+TGG 0.259430 4_3:-10417328 Msa0629560:CDS
TACGACTATATAAGCAATTC+AGG 0.266524 4_3:+10415842 None:intergenic
CAAGTATGCATCAGCTAAAA+AGG 0.280188 4_3:+10418358 None:intergenic
TTTCTCTGATTTCAGGTGTT+TGG 0.290019 4_3:-10416773 Msa0629560:intron
AAGTTATTGTTGCAGCATTT+AGG 0.328500 4_3:-10417048 Msa0629560:CDS
GACATAGATACTTGAGAAAC+TGG 0.336849 4_3:+10418316 None:intergenic
CCATCCCTATGTCGATCTTC+TGG 0.340879 4_3:-10416294 Msa0629560:CDS
CTCGAAGACCGTTACGGACT+TGG 0.350415 4_3:-10418449 Msa0629560:CDS
TTGCTTCCTCGGTGTTGGTT+TGG 0.353446 4_3:-10417210 Msa0629560:CDS
TGACCCCTATTCATATTATC+TGG 0.356552 4_3:+10416061 None:intergenic
GAAGTAAAACCAATTGAAAA+AGG 0.359554 4_3:+10417255 None:intergenic
CACTCTAAGTGTCATCTTCT+GGG 0.360635 4_3:-10416503 Msa0629560:CDS
CGTTCGTTTACTCCCCGTTT+GGG 0.363000 4_3:-10416653 Msa0629560:CDS
ACAAAAGTTACTACAAGAAA+TGG 0.370351 4_3:-10416100 Msa0629560:CDS
TACTTGATTGCACTTGGAAC+CGG 0.374881 4_3:-10417358 Msa0629560:CDS
ATCACACGACAAATTGTTGC+AGG 0.375208 4_3:-10418530 Msa0629560:five_prime_UTR
TCATCCACACAAATATTTGC+CGG 0.397166 4_3:+10415800 None:intergenic
TCGTTCGTTTACTCCCCGTT+TGG 0.403486 4_3:-10416654 Msa0629560:CDS
TAAAGAAGAGATTTATCATC+TGG 0.408049 4_3:+10417007 None:intergenic
TGATTTCAGGTGTTTGGATA+AGG 0.409036 4_3:-10416767 Msa0629560:intron
TGCAACAGTATACAGTCAAA+TGG 0.413873 4_3:-10416614 Msa0629560:CDS
GGATTCCAGATAATATGAAT+AGG 0.414072 4_3:-10416066 Msa0629560:CDS
TTCACTCACAACTAATGCAT+TGG 0.422202 4_3:-10416158 Msa0629560:CDS
GTCATCTTGATTACTTCTAC+TGG 0.423570 4_3:-10416042 Msa0629560:CDS
GGAAATGTTTGTATCTAAAC+CGG 0.425824 4_3:-10415819 Msa0629560:three_prime_UTR
GTTGCAGCATTTAGGAAACT+TGG 0.431571 4_3:-10417040 Msa0629560:CDS
ACTCCTCTGGTTACACATCT+AGG 0.434573 4_3:+10415921 None:intergenic
CGGTGCACTCATTGCTTCCT+CGG 0.439767 4_3:-10417221 Msa0629560:CDS
ACTTGACAAATCCTTGTAAG+AGG 0.442092 4_3:+10417067 None:intergenic
GATTCCAGATAATATGAATA+GGG 0.442981 4_3:-10416065 Msa0629560:CDS
TGTGAAAGATTGGCTTACTA+TGG 0.447799 4_3:-10418497 Msa0629560:five_prime_UTR
GGCTATCAGTGATGCCCAAA+CGG 0.448610 4_3:+10416639 None:intergenic
ATGAATGTCGGATGGGGATG+GGG 0.453174 4_3:-10417181 Msa0629560:CDS
TAGAATTCCTGCCACGATCA+TGG 0.454202 4_3:+10416369 None:intergenic
ACTCATTGCTTCCTCGGTGT+TGG 0.455639 4_3:-10417215 Msa0629560:CDS
GTGCAGAGCCTCCATGGATT+CGG 0.457325 4_3:+10416706 None:intergenic
TCACTCACAACTAATGCATT+GGG 0.458337 4_3:-10416157 Msa0629560:CDS
GCTATCAGTGATGCCCAAAC+GGG 0.459760 4_3:+10416640 None:intergenic
ATGCATACTTGGGAAGATAC+TGG 0.462100 4_3:-10418346 Msa0629560:CDS
TGACACTTAGAGTGTCGAAA+AGG 0.462376 4_3:+10416512 None:intergenic
GATGAATGTCGGATGGGGAT+GGG 0.465810 4_3:-10417182 Msa0629560:CDS
GCTGTGTGAATCCGTGTTCA+TGG 0.471308 4_3:+10416431 None:intergenic
CTATGGCATGAGTACAAACT+TGG 0.471382 4_3:-10418480 Msa0629560:exon
TAATGAATGTTGTGAAAGAT+TGG 0.472976 4_3:-10418507 Msa0629560:five_prime_UTR
TGTATCTATTGATTGCTAAG+AGG 0.474542 4_3:-10415985 Msa0629560:CDS
AACTATCTCGAAGACCGTTA+CGG 0.475606 4_3:-10418455 Msa0629560:CDS
ATCAAAGGCTTCAACTCCTC+TGG 0.476659 4_3:+10415908 None:intergenic
AGATGAATGTCGGATGGGGA+TGG 0.477086 4_3:-10417183 Msa0629560:CDS
TGCCACGATCATGGAAATGA+TGG 0.477542 4_3:+10416378 None:intergenic
AAGCCTTCATGTGATGCTAA+TGG 0.479194 4_3:-10417427 Msa0629560:CDS
ATACTTTATTTAATGATCAA+AGG 0.480955 4_3:+10415893 None:intergenic
ATCATTTCCATGATCGTGGC+AGG 0.481779 4_3:-10416376 Msa0629560:CDS
ACTACAAGAAATGGAAGTCT+TGG 0.484536 4_3:-10416091 Msa0629560:CDS
AATGGCTGCCATCCGACGTC+AGG 0.484612 4_3:-10417409 Msa0629560:CDS
TTCACACAGCTTCAAAGAAT+CGG 0.484967 4_3:-10416418 Msa0629560:CDS
GCACTTTACTTGATTGCACT+TGG 0.486202 4_3:-10417364 Msa0629560:CDS
TGTTACATCACACCATTGCT+TGG 0.490210 4_3:-10418383 Msa0629560:CDS
GGAACCATGTTTGTGTTACA+AGG 0.495089 4_3:-10416592 Msa0629560:CDS
CAAGAAATGGAAGTCTTGGT+TGG 0.496663 4_3:-10416087 Msa0629560:CDS
ACGATGAGACGGTCGTAGAC+CGG 0.502734 4_3:+10416478 None:intergenic
CTGCAAATACTGTCACAACT+TGG 0.505268 4_3:-10418415 Msa0629560:CDS
CGATGAGACGGTCGTAGACC+GGG 0.505276 4_3:+10416479 None:intergenic
AAGTGTCATCTTCTGGGCCC+CGG 0.506775 4_3:-10416497 Msa0629560:CDS
GCAACAGTATACAGTCAAAT+GGG 0.512639 4_3:-10416613 Msa0629560:CDS
ATGTAGAATCTAACATCAAA+GGG 0.513359 4_3:-10416973 Msa0629560:CDS
GACACTTAGAGTGTCGAAAA+GGG 0.515286 4_3:+10416513 None:intergenic
CGGTGAACTTTCTTGCGAAA+GGG 0.518248 4_3:+10416455 None:intergenic
AATACTGTCACAACTTGGTC+GGG 0.519066 4_3:-10418410 Msa0629560:CDS
TAAAAGATTTACCGAATCCA+TGG 0.520585 4_3:-10416717 Msa0629560:CDS
TTTCACTAATATCGGTCAGA+TGG 0.527060 4_3:-10416233 Msa0629560:CDS
GTTACTGTGCAGAGCCTCCA+TGG 0.528525 4_3:+10416700 None:intergenic
CCGGTGAACTTTCTTGCGAA+AGG 0.533554 4_3:+10416454 None:intergenic
GATGTAGAATCTAACATCAA+AGG 0.533602 4_3:-10416974 Msa0629560:CDS
AAATACTGTCACAACTTGGT+CGG 0.534850 4_3:-10418411 Msa0629560:CDS
CAGTTTGTCCTGACGTCGGA+TGG 0.535426 4_3:+10417401 None:intergenic
CTGGTGGAAGTCCTCTTACA+AGG 0.537556 4_3:-10417078 Msa0629560:CDS
TCAAAGAATCGGAATCGGCC+TGG 0.538170 4_3:-10416407 Msa0629560:CDS
TGGAGTGCCTGGAGTTGCAA+TGG 0.539760 4_3:-10417155 Msa0629560:CDS
CACAAACTTCTCATAGCATC+GGG 0.539806 4_3:+10416190 None:intergenic
CAGCTTCAAAGAATCGGAAT+CGG 0.543032 4_3:-10416412 Msa0629560:CDS
TTGCAGCATTTAGGAAACTT+GGG 0.546918 4_3:-10417039 Msa0629560:CDS
TTGCGAAAGGGACGATGAGA+CGG 0.547490 4_3:+10416467 None:intergenic
AATCTAACATCAAAGGGAGC+CGG 0.551381 4_3:-10416967 Msa0629560:CDS
TGTGAATCCGTGTTCATGGC+CGG 0.553955 4_3:+10416435 None:intergenic
GCGATAACCATTGCAACTCC+AGG 0.558801 4_3:+10417148 None:intergenic
TCACATGAAGGCTTTAGTCC+AGG 0.560189 4_3:+10417436 None:intergenic
AAAAGGGAGAGGGAAGCTGA+TGG 0.562385 4_3:+10416529 None:intergenic
ACACAAACTTCTCATAGCAT+CGG 0.567737 4_3:+10416189 None:intergenic
ACTTGCCAGAAGATCGACAT+AGG 0.569304 4_3:+10416289 None:intergenic
CTTTAGTCCAGGTGCAATTG+CGG 0.570201 4_3:+10417447 None:intergenic
GGATACAGATGAATGTCGGA+TGG 0.573725 4_3:-10417189 Msa0629560:CDS
TGGAAATGATGGAGATGACC+AGG 0.574186 4_3:+10416389 None:intergenic
TGAATTGCTTATATAGTCGT+AGG 0.575687 4_3:-10415840 Msa0629560:three_prime_UTR
TTGACTGTATACTGTTGCAA+AGG 0.587730 4_3:+10416618 None:intergenic
AACACACGGTTTGATACCGC+CGG 0.589392 4_3:+10417339 None:intergenic
GATACAGATGAATGTCGGAT+GGG 0.590289 4_3:-10417188 Msa0629560:CDS
CAGCCATTAGCATCACATGA+AGG 0.594111 4_3:+10417424 None:intergenic
CAGTAGAGACAGAATCCGAC+CGG 0.595827 4_3:-10416741 Msa0629560:CDS
TGGTATAGACTTCAAATACC+TGG 0.596885 4_3:-10417097 Msa0629560:CDS
TAGAGTGTCGAAAAGGGAGA+GGG 0.597883 4_3:+10416519 None:intergenic
TTAGAGTGTCGAAAAGGGAG+AGG 0.602267 4_3:+10416518 None:intergenic
CTCCATCATTTCCATGATCG+TGG 0.606113 4_3:-10416380 Msa0629560:CDS
CCAGAAGATCGACATAGGGA+TGG 0.612471 4_3:+10416294 None:intergenic
AAGTTCACCGGCCATGAACA+CGG 0.612897 4_3:-10416442 Msa0629560:CDS
CTTGTAAGAGGACTTCCACC+AGG 0.614606 4_3:+10417079 None:intergenic
TTGATTGCACTTGGAACCGG+CGG 0.621834 4_3:-10417355 Msa0629560:CDS
CTGCATTTCCAAGTCCGTAA+CGG 0.628403 4_3:+10418441 None:intergenic
AATTGTTAGTACAACAACGC+TGG 0.634231 4_3:+10418569 None:intergenic
ATTCCAGATAATATGAATAG+GGG 0.635841 4_3:-10416064 Msa0629560:CDS
CCTTTCGCAAGAAAGTTCAC+CGG 0.638836 4_3:-10416454 Msa0629560:CDS
GTTTGGATACAGATGAATGT+CGG 0.639388 4_3:-10417193 Msa0629560:CDS
TAAACCGGCAAATATTTGTG+TGG 0.650235 4_3:-10415804 Msa0629560:three_prime_UTR
GTACCACAGTATTTCCTCGT+AGG 0.651597 4_3:-10416268 Msa0629560:CDS
ATACAGATGAATGTCGGATG+GGG 0.656151 4_3:-10417187 Msa0629560:CDS
CTTGCCAGAAGATCGACATA+GGG 0.656281 4_3:+10416290 None:intergenic
ATGAAAACGACGAGACTGAG+AGG 0.659831 4_3:-10417291 Msa0629560:CDS
AACACAATGGATCAACACAT+TGG 0.661215 4_3:-10416568 Msa0629560:CDS
TGTGTTACAAGGCAACACAA+TGG 0.665398 4_3:-10416581 Msa0629560:CDS
TATAGACTTCAAATACCTGG+TGG 0.669427 4_3:-10417094 Msa0629560:CDS
GCTGCAGTTTGTCCTGACGT+CGG 0.674367 4_3:+10417397 None:intergenic
GATGAGACGGTCGTAGACCG+GGG 0.681272 4_3:+10416480 None:intergenic
GTTGCCTTGTAACACAAACA+TGG 0.693293 4_3:+10416588 None:intergenic
CTATCAGTGATGCCCAAACG+GGG 0.694144 4_3:+10416641 None:intergenic
GTACCTAGATGTGTAACCAG+AGG 0.698429 4_3:-10415924 Msa0629560:three_prime_UTR
AAACTTCAGCTGCACCTACG+AGG 0.699121 4_3:+10416254 None:intergenic
AAGATTTACCGAATCCATGG+AGG 0.715910 4_3:-10416714 Msa0629560:CDS
GCACCAAAAGATGAAACACA+CGG 0.721405 4_3:+10417325 None:intergenic
GCACCTACGAGGAAATACTG+TGG 0.781852 4_3:+10416265 None:intergenic
CTGTATCCAAACCAACACCG+AGG 0.799571 4_3:+10417204 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTAAAATGTTTTGATAA+AGG - chr4_3:10416164-10416183 Msa0629560:CDS 15.0%
!!! TTTTCAAGAAATTTTAATTC+AGG - chr4_3:10416758-10416777 Msa0629560:CDS 15.0%
!!! TTTTACTTCTCAATTAATAT+CGG - chr4_3:10417182-10417201 Msa0629560:CDS 15.0%
!! CATAAAGACAAATATAAAAA+TGG + chr4_3:10417522-10417541 None:intergenic 15.0%
!!! ATACTTTATTTAATGATCAA+AGG + chr4_3:10418533-10418552 None:intergenic 15.0%
!!! ACTTATTTGAGTTTATTTAC+AGG - chr4_3:10416834-10416853 Msa0629560:intron 20.0%
!! ACCAATGAAGAAAAATATAA+TGG + chr4_3:10417300-10417319 None:intergenic 20.0%
! TAATGAATGTTGTGAAAGAT+TGG - chr4_3:10415916-10415935 Msa0629560:three_prime_UTR 25.0%
! TTACTTGAACTTCAAGTAAA+CGG + chr4_3:10416391-10416410 None:intergenic 25.0%
!! AAATGCTGAATTTTCTGTTT+TGG - chr4_3:10416414-10416433 Msa0629560:CDS 25.0%
! GAGAAAGAATAGAGAAAATT+GGG + chr4_3:10416550-10416569 None:intergenic 25.0%
! AGAGAAAGAATAGAGAAAAT+TGG + chr4_3:10416551-10416570 None:intergenic 25.0%
!!! GTTTTTGAAGTACATGAAAA+TGG - chr4_3:10416634-10416653 Msa0629560:CDS 25.0%
! AGATCATTTCTATCAAGTTA+GGG - chr4_3:10416798-10416817 Msa0629560:intron 25.0%
! ACATTAACAAGTTAATTGAC+AGG + chr4_3:10416910-10416929 None:intergenic 25.0%
!! CAAGTAAAGTGCTATAAAAA+GGG + chr4_3:10417051-10417070 None:intergenic 25.0%
!! TCAAGTAAAGTGCTATAAAA+AGG + chr4_3:10417052-10417071 None:intergenic 25.0%
! GAAGTAAAACCAATTGAAAA+AGG + chr4_3:10417171-10417190 None:intergenic 25.0%
!! GCCATTATATTTTTCTTCAT+TGG - chr4_3:10417296-10417315 Msa0629560:CDS 25.0%
! TAAAGAAGAGATTTATCATC+TGG + chr4_3:10417419-10417438 None:intergenic 25.0%
! ATGTAGAATCTAACATCAAA+GGG - chr4_3:10417450-10417469 Msa0629560:CDS 25.0%
! AAACAAATTTCTCTGATTTC+AGG - chr4_3:10417643-10417662 Msa0629560:intron 25.0%
!!! GATCATAGTAGTTTTTTTTG+CGG + chr4_3:10418103-10418122 None:intergenic 25.0%
! ACAAAAGTTACTACAAGAAA+TGG - chr4_3:10418323-10418342 Msa0629560:CDS 25.0%
! GATTCCAGATAATATGAATA+GGG - chr4_3:10418358-10418377 Msa0629560:CDS 25.0%
! ATTCCAGATAATATGAATAG+GGG - chr4_3:10418359-10418378 Msa0629560:CDS 25.0%
!!! TTTTTAGCTGATGCATACTT+GGG - chr4_3:10416067-10416086 Msa0629560:CDS 30.0%
AGTTCATATTTAAACGTCTG+AGG - chr4_3:10416214-10416233 Msa0629560:CDS 30.0%
AGTTCAAAAGAATACACTGA+TGG + chr4_3:10416325-10416344 None:intergenic 30.0%
GCTAATTTGAATTGTACTCT+CGG + chr4_3:10416361-10416380 None:intergenic 30.0%
TCCTCAAAGTAGAATAGAAT+TGG + chr4_3:10416662-10416681 None:intergenic 30.0%
!!! TCTTAGCTCTAGTTTCATTT+TGG - chr4_3:10416696-10416715 Msa0629560:CDS 30.0%
CAGATCATTTCTATCAAGTT+AGG - chr4_3:10416797-10416816 Msa0629560:intron 30.0%
TCAAATAAGTCCATCAAAAC+AGG + chr4_3:10416824-10416843 None:intergenic 30.0%
!!! AGAAAAGCTCCTTTTTCAAT+TGG - chr4_3:10417159-10417178 Msa0629560:CDS 30.0%
!! TTTTCTTCATTGGTAGTAGA+TGG - chr4_3:10417306-10417325 Msa0629560:CDS 30.0%
AAGTTATTGTTGCAGCATTT+AGG - chr4_3:10417375-10417394 Msa0629560:CDS 30.0%
GATGTAGAATCTAACATCAA+AGG - chr4_3:10417449-10417468 Msa0629560:CDS 30.0%
! ACGAAGTTTGGAATAAGAAA+AGG + chr4_3:10417564-10417583 None:intergenic 30.0%
CGTTAATGAATTACGAAGTT+TGG + chr4_3:10417576-10417595 None:intergenic 30.0%
!! GATTCGGTAAATCTTTTATC+CGG + chr4_3:10417704-10417723 None:intergenic 30.0%
TAAAAGATTTACCGAATCCA+TGG - chr4_3:10417706-10417725 Msa0629560:intron 30.0%
! GCTGATGGAATTTTGAATTT+AGG + chr4_3:10417882-10417901 None:intergenic 30.0%
! GCTGAAGTTTTCACTAATAT+CGG - chr4_3:10418182-10418201 Msa0629560:intron 30.0%
GGATTCCAGATAATATGAAT+AGG - chr4_3:10418357-10418376 Msa0629560:CDS 30.0%
! TGTATCTATTGATTGCTAAG+AGG - chr4_3:10418438-10418457 Msa0629560:CDS 30.0%
ACAAAAAAGTGACTCATCTT+AGG - chr4_3:10418468-10418487 Msa0629560:CDS 30.0%
TACGACTATATAAGCAATTC+AGG + chr4_3:10418584-10418603 None:intergenic 30.0%
TGAATTGCTTATATAGTCGT+AGG - chr4_3:10418583-10418602 Msa0629560:five_prime_UTR 30.0%
GGAAATGTTTGTATCTAAAC+CGG - chr4_3:10418604-10418623 Msa0629560:five_prime_UTR 30.0%
AATTGTTAGTACAACAACGC+TGG + chr4_3:10415857-10415876 None:intergenic 35.0%
!! TGTGAAAGATTGGCTTACTA+TGG - chr4_3:10415926-10415945 Msa0629560:three_prime_UTR 35.0%
AAATACTGTCACAACTTGGT+CGG - chr4_3:10416012-10416031 Msa0629560:CDS 35.0%
CAAGTATGCATCAGCTAAAA+AGG + chr4_3:10416068-10416087 None:intergenic 35.0%
!!! CTTTTTAGCTGATGCATACT+TGG - chr4_3:10416066-10416085 Msa0629560:CDS 35.0%
GACATAGATACTTGAGAAAC+TGG + chr4_3:10416110-10416129 None:intergenic 35.0%
ACTTCAAGTAAACGGTTCAT+TGG + chr4_3:10416383-10416402 None:intergenic 35.0%
CGATAGAGAAGAGAGATTAA+AGG + chr4_3:10416574-10416593 None:intergenic 35.0%
GCCAATTCTATTCTACTTTG+AGG - chr4_3:10416658-10416677 Msa0629560:CDS 35.0%
! AAACCGTGTGTTTCATCTTT+TGG - chr4_3:10417095-10417114 Msa0629560:CDS 35.0%
!! TCTCGTCGTTTTCATCAAAT+TGG + chr4_3:10417127-10417146 None:intergenic 35.0%
GTTTGGATACAGATGAATGT+CGG - chr4_3:10417230-10417249 Msa0629560:CDS 35.0%
TGGTATAGACTTCAAATACC+TGG - chr4_3:10417326-10417345 Msa0629560:CDS 35.0%
TATAGACTTCAAATACCTGG+TGG - chr4_3:10417329-10417348 Msa0629560:CDS 35.0%
ACTTGACAAATCCTTGTAAG+AGG + chr4_3:10417359-10417378 None:intergenic 35.0%
TTGCAGCATTTAGGAAACTT+GGG - chr4_3:10417384-10417403 Msa0629560:CDS 35.0%
! CATTTGTGTGTTCAAGTTTC+CGG + chr4_3:10417478-10417497 None:intergenic 35.0%
! TTTCTCTGATTTCAGGTGTT+TGG - chr4_3:10417650-10417669 Msa0629560:intron 35.0%
! TGATTTCAGGTGTTTGGATA+AGG - chr4_3:10417656-10417675 Msa0629560:intron 35.0%
TTGACTGTATACTGTTGCAA+AGG + chr4_3:10417808-10417827 None:intergenic 35.0%
TGCAACAGTATACAGTCAAA+TGG - chr4_3:10417809-10417828 Msa0629560:intron 35.0%
GCAACAGTATACAGTCAAAT+GGG - chr4_3:10417810-10417829 Msa0629560:intron 35.0%
AACACAATGGATCAACACAT+TGG - chr4_3:10417855-10417874 Msa0629560:intron 35.0%
TTCACACAGCTTCAAAGAAT+CGG - chr4_3:10418005-10418024 Msa0629560:intron 35.0%
TTTCACTAATATCGGTCAGA+TGG - chr4_3:10418190-10418209 Msa0629560:intron 35.0%
! GGTCAGATGGAATTCTTTTA+TGG - chr4_3:10418203-10418222 Msa0629560:intron 35.0%
! GATGGAATTCTTTTATGGTC+AGG - chr4_3:10418208-10418227 Msa0629560:intron 35.0%
ACACAAACTTCTCATAGCAT+CGG + chr4_3:10418237-10418256 None:intergenic 35.0%
TTCACTCACAACTAATGCAT+TGG - chr4_3:10418265-10418284 Msa0629560:intron 35.0%
TCACTCACAACTAATGCATT+GGG - chr4_3:10418266-10418285 Msa0629560:intron 35.0%
ACTACAAGAAATGGAAGTCT+TGG - chr4_3:10418332-10418351 Msa0629560:CDS 35.0%
TGACCCCTATTCATATTATC+TGG + chr4_3:10418365-10418384 None:intergenic 35.0%
GTCATCTTGATTACTTCTAC+TGG - chr4_3:10418381-10418400 Msa0629560:CDS 35.0%
TAAACCGGCAAATATTTGTG+TGG - chr4_3:10418619-10418638 Msa0629560:five_prime_UTR 35.0%
TCATCCACACAAATATTTGC+CGG + chr4_3:10418626-10418645 None:intergenic 35.0%
ATCACACGACAAATTGTTGC+AGG - chr4_3:10415893-10415912 Msa0629560:three_prime_UTR 40.0%
CTATGGCATGAGTACAAACT+TGG - chr4_3:10415943-10415962 Msa0629560:exon 40.0%
AACTATCTCGAAGACCGTTA+CGG - chr4_3:10415968-10415987 Msa0629560:CDS 40.0%
CTGCAAATACTGTCACAACT+TGG - chr4_3:10416008-10416027 Msa0629560:CDS 40.0%
AATACTGTCACAACTTGGTC+GGG - chr4_3:10416013-10416032 Msa0629560:CDS 40.0%
TGTTACATCACACCATTGCT+TGG - chr4_3:10416040-10416059 Msa0629560:CDS 40.0%
ATGCATACTTGGGAAGATAC+TGG - chr4_3:10416077-10416096 Msa0629560:CDS 40.0%
! GTCTGAGGTTCATAGTCAAA+AGG - chr4_3:10416229-10416248 Msa0629560:CDS 40.0%
! AGTTGTTTCCATAAGCACTC+AGG + chr4_3:10416882-10416901 None:intergenic 40.0%
TCGTTGTTTGTGTACTTTCC+AGG - chr4_3:10416932-10416951 Msa0629560:intron 40.0%
CGTTGTTTGTGTACTTTCCA+GGG - chr4_3:10416933-10416952 Msa0629560:intron 40.0%
TTTGTGTACTTTCCAGGGAA+TGG - chr4_3:10416938-10416957 Msa0629560:intron 40.0%
!! ATGTTAAAAGTGCCATTCCC+TGG + chr4_3:10416953-10416972 None:intergenic 40.0%
AAGCCTTCATGTGATGCTAA+TGG - chr4_3:10416996-10417015 Msa0629560:CDS 40.0%
GCACTTTACTTGATTGCACT+TGG - chr4_3:10417059-10417078 Msa0629560:CDS 40.0%
TACTTGATTGCACTTGGAAC+CGG - chr4_3:10417065-10417084 Msa0629560:CDS 40.0%
GCACCAAAAGATGAAACACA+CGG + chr4_3:10417101-10417120 None:intergenic 40.0%
GATACAGATGAATGTCGGAT+GGG - chr4_3:10417235-10417254 Msa0629560:CDS 40.0%
ATACAGATGAATGTCGGATG+GGG - chr4_3:10417236-10417255 Msa0629560:CDS 40.0%
GTTGCAGCATTTAGGAAACT+TGG - chr4_3:10417383-10417402 Msa0629560:CDS 40.0%
AATCTAACATCAAAGGGAGC+CGG - chr4_3:10417456-10417475 Msa0629560:CDS 40.0%
GTCTTTATGAGACTACTCGT+TGG - chr4_3:10417533-10417552 Msa0629560:intron 40.0%
! CGGTAAATCTTTTATCCGGT+CGG + chr4_3:10417700-10417719 None:intergenic 40.0%
AAGATTTACCGAATCCATGG+AGG - chr4_3:10417709-10417728 Msa0629560:intron 40.0%
GGAACCATGTTTGTGTTACA+AGG - chr4_3:10417831-10417850 Msa0629560:intron 40.0%
GTTGCCTTGTAACACAAACA+TGG + chr4_3:10417838-10417857 None:intergenic 40.0%
TGTGTTACAAGGCAACACAA+TGG - chr4_3:10417842-10417861 Msa0629560:intron 40.0%
!! GACACTTAGAGTGTCGAAAA+GGG + chr4_3:10417913-10417932 None:intergenic 40.0%
!! TGACACTTAGAGTGTCGAAA+AGG + chr4_3:10417914-10417933 None:intergenic 40.0%
ACACTCTAAGTGTCATCTTC+TGG - chr4_3:10417919-10417938 Msa0629560:intron 40.0%
CACTCTAAGTGTCATCTTCT+GGG - chr4_3:10417920-10417939 Msa0629560:intron 40.0%
CAGCTTCAAAGAATCGGAAT+CGG - chr4_3:10418011-10418030 Msa0629560:intron 40.0%
!!! TTTTTTTGCGGACAATGTCG+AGG + chr4_3:10418091-10418110 None:intergenic 40.0%
CACAAACTTCTCATAGCATC+GGG + chr4_3:10418236-10418255 None:intergenic 40.0%
CAAGAAATGGAAGTCTTGGT+TGG - chr4_3:10418336-10418355 Msa0629560:CDS 40.0%
CTGCATTTCCAAGTCCGTAA+CGG + chr4_3:10415985-10416004 None:intergenic 45.0%
GCTAAAAAGGCTCCAAGCAA+TGG + chr4_3:10416055-10416074 None:intergenic 45.0%
!! CAAGTTAGGGCCTGTTTTGA+TGG - chr4_3:10416811-10416830 Msa0629560:intron 45.0%
AGACTGTTCCTGAGTGCTTA+TGG - chr4_3:10416871-10416890 Msa0629560:intron 45.0%
! ACATTTTCCGCAATTGCACC+TGG - chr4_3:10416969-10416988 Msa0629560:CDS 45.0%
CTTTAGTCCAGGTGCAATTG+CGG + chr4_3:10416979-10416998 None:intergenic 45.0%
! TCACATGAAGGCTTTAGTCC+AGG + chr4_3:10416990-10417009 None:intergenic 45.0%
CAGCCATTAGCATCACATGA+AGG + chr4_3:10417002-10417021 None:intergenic 45.0%
ATGAAAACGACGAGACTGAG+AGG - chr4_3:10417132-10417151 Msa0629560:CDS 45.0%
GGATACAGATGAATGTCGGA+TGG - chr4_3:10417234-10417253 Msa0629560:CDS 45.0%
!! TAGAGTGTCGAAAAGGGAGA+GGG + chr4_3:10417907-10417926 None:intergenic 45.0%
!! TTAGAGTGTCGAAAAGGGAG+AGG + chr4_3:10417908-10417927 None:intergenic 45.0%
CGGTGAACTTTCTTGCGAAA+GGG + chr4_3:10417971-10417990 None:intergenic 45.0%
CCTTTCGCAAGAAAGTTCAC+CGG - chr4_3:10417969-10417988 Msa0629560:intron 45.0%
! TGGAAATGATGGAGATGACC+AGG + chr4_3:10418037-10418056 None:intergenic 45.0%
CTCCATCATTTCCATGATCG+TGG - chr4_3:10418043-10418062 Msa0629560:intron 45.0%
TGCCACGATCATGGAAATGA+TGG + chr4_3:10418048-10418067 None:intergenic 45.0%
ATCATTTCCATGATCGTGGC+AGG - chr4_3:10418047-10418066 Msa0629560:intron 45.0%
TAGAATTCCTGCCACGATCA+TGG + chr4_3:10418057-10418076 None:intergenic 45.0%
CTTGCCAGAAGATCGACATA+GGG + chr4_3:10418136-10418155 None:intergenic 45.0%
ACTTGCCAGAAGATCGACAT+AGG + chr4_3:10418137-10418156 None:intergenic 45.0%
GTACCACAGTATTTCCTCGT+AGG - chr4_3:10418155-10418174 Msa0629560:intron 45.0%
GTACCTAGATGTGTAACCAG+AGG - chr4_3:10418499-10418518 Msa0629560:five_prime_UTR 45.0%
ACTCCTCTGGTTACACATCT+AGG + chr4_3:10418505-10418524 None:intergenic 45.0%
ATCAAAGGCTTCAACTCCTC+TGG + chr4_3:10418518-10418537 None:intergenic 45.0%
GAATTGTACTCTCGGCAGAC+AGG + chr4_3:10416353-10416372 None:intergenic 50.0%
TTGATTGCACTTGGAACCGG+CGG - chr4_3:10417068-10417087 Msa0629560:CDS 50.0%
AACACACGGTTTGATACCGC+CGG + chr4_3:10417087-10417106 None:intergenic 50.0%
! ACTCATTGCTTCCTCGGTGT+TGG - chr4_3:10417208-10417227 Msa0629560:CDS 50.0%
!! TTGCTTCCTCGGTGTTGGTT+TGG - chr4_3:10417213-10417232 Msa0629560:CDS 50.0%
CTGTATCCAAACCAACACCG+AGG + chr4_3:10417222-10417241 None:intergenic 50.0%
AGATGAATGTCGGATGGGGA+TGG - chr4_3:10417240-10417259 Msa0629560:CDS 50.0%
GATGAATGTCGGATGGGGAT+GGG - chr4_3:10417241-10417260 Msa0629560:CDS 50.0%
ATGAATGTCGGATGGGGATG+GGG - chr4_3:10417242-10417261 Msa0629560:CDS 50.0%
GCGATAACCATTGCAACTCC+AGG + chr4_3:10417278-10417297 None:intergenic 50.0%
CTTGTAAGAGGACTTCCACC+AGG + chr4_3:10417347-10417366 None:intergenic 50.0%
CTGGTGGAAGTCCTCTTACA+AGG - chr4_3:10417345-10417364 Msa0629560:CDS 50.0%
CAGTAGAGACAGAATCCGAC+CGG - chr4_3:10417682-10417701 Msa0629560:intron 50.0%
TCGTTCGTTTACTCCCCGTT+TGG - chr4_3:10417769-10417788 Msa0629560:intron 50.0%
CGTTCGTTTACTCCCCGTTT+GGG - chr4_3:10417770-10417789 Msa0629560:intron 50.0%
CTATCAGTGATGCCCAAACG+GGG + chr4_3:10417785-10417804 None:intergenic 50.0%
GCTATCAGTGATGCCCAAAC+GGG + chr4_3:10417786-10417805 None:intergenic 50.0%
GGCTATCAGTGATGCCCAAA+CGG + chr4_3:10417787-10417806 None:intergenic 50.0%
AAAAGGGAGAGGGAAGCTGA+TGG + chr4_3:10417897-10417916 None:intergenic 50.0%
TTGCGAAAGGGACGATGAGA+CGG + chr4_3:10417959-10417978 None:intergenic 50.0%
CCGGTGAACTTTCTTGCGAA+AGG + chr4_3:10417972-10417991 None:intergenic 50.0%
AAGTTCACCGGCCATGAACA+CGG - chr4_3:10417981-10418000 Msa0629560:intron 50.0%
TGTGAATCCGTGTTCATGGC+CGG + chr4_3:10417991-10418010 None:intergenic 50.0%
GCTGTGTGAATCCGTGTTCA+TGG + chr4_3:10417995-10418014 None:intergenic 50.0%
TCAAAGAATCGGAATCGGCC+TGG - chr4_3:10418016-10418035 Msa0629560:intron 50.0%
! TTTTGCGGACAATGTCGAGG+CGG + chr4_3:10418088-10418107 None:intergenic 50.0%
CCAGAAGATCGACATAGGGA+TGG + chr4_3:10418132-10418151 None:intergenic 50.0%
CCATCCCTATGTCGATCTTC+TGG - chr4_3:10418129-10418148 Msa0629560:intron 50.0%
GCACCTACGAGGAAATACTG+TGG + chr4_3:10418161-10418180 None:intergenic 50.0%
AAACTTCAGCTGCACCTACG+AGG + chr4_3:10418172-10418191 None:intergenic 50.0%
CTCGAAGACCGTTACGGACT+TGG - chr4_3:10415974-10415993 Msa0629560:CDS 55.0%
CAGTTTGTCCTGACGTCGGA+TGG + chr4_3:10417025-10417044 None:intergenic 55.0%
GCTGCAGTTTGTCCTGACGT+CGG + chr4_3:10417029-10417048 None:intergenic 55.0%
CGGTGCACTCATTGCTTCCT+CGG - chr4_3:10417202-10417221 Msa0629560:CDS 55.0%
! TGGAGTGCCTGGAGTTGCAA+TGG - chr4_3:10417268-10417287 Msa0629560:CDS 55.0%
GTGCAGAGCCTCCATGGATT+CGG + chr4_3:10417720-10417739 None:intergenic 55.0%
GTTACTGTGCAGAGCCTCCA+TGG + chr4_3:10417726-10417745 None:intergenic 55.0%
AAGTGTCATCTTCTGGGCCC+CGG - chr4_3:10417926-10417945 Msa0629560:intron 55.0%
ACGATGAGACGGTCGTAGAC+CGG + chr4_3:10417948-10417967 None:intergenic 55.0%
AATGGCTGCCATCCGACGTC+AGG - chr4_3:10417014-10417033 Msa0629560:CDS 60.0%
! GTCGGATGGGGATGGGGTTT+TGG - chr4_3:10417248-10417267 Msa0629560:CDS 60.0%
!!! GGATGGGGTTTTGGAGTGCC+TGG - chr4_3:10417257-10417276 Msa0629560:CDS 60.0%
GATGAGACGGTCGTAGACCG+GGG + chr4_3:10417946-10417965 None:intergenic 60.0%
CGATGAGACGGTCGTAGACC+GGG + chr4_3:10417947-10417966 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 10415785 10418660 10415785 ID=Msa0629560;Name=Msa0629560
chr4_3 mRNA 10415785 10418660 10415785 ID=Msa0629560-mRNA-1;Parent=Msa0629560;Name=Msa0629560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=165|1|1|1|1|1|3|167|520
chr4_3 exon 10415785 10416780 10415785 ID=Msa0629560-mRNA-1:exon:3225;Parent=Msa0629560-mRNA-1
chr4_3 exon 10416941 10417491 10416941 ID=Msa0629560-mRNA-1:exon:3224;Parent=Msa0629560-mRNA-1
chr4_3 exon 10418313 10418660 10418313 ID=Msa0629560-mRNA-1:exon:3223;Parent=Msa0629560-mRNA-1
chr4_3 five_prime_UTR 10418496 10418660 10418496 ID=Msa0629560-mRNA-1:five_prime_utr;Parent=Msa0629560-mRNA-1
chr4_3 CDS 10418313 10418495 10418313 ID=Msa0629560-mRNA-1:cds;Parent=Msa0629560-mRNA-1
chr4_3 CDS 10416941 10417491 10416941 ID=Msa0629560-mRNA-1:cds;Parent=Msa0629560-mRNA-1
chr4_3 CDS 10415952 10416780 10415952 ID=Msa0629560-mRNA-1:cds;Parent=Msa0629560-mRNA-1
chr4_3 three_prime_UTR 10415785 10415951 10415785 ID=Msa0629560-mRNA-1:three_prime_utr;Parent=Msa0629560-mRNA-1
Gene Sequence

>Msa0629560

ATGAGTACAAACTTGGTGAACTATCTCGAAGACCGTTACGGACTTGGAAATGCAGCTGCTGCAAATACTGTCACAACTTGGTCGGGAACATGTTACATCACACCATTGCTTGGAGCCTTTTTAGCTGATGCATACTTGGGAAGATACTGGACAATTGCCAGTTTCTCAAGTATCTATGTCATTGGAATGGCACTTTTAACATTTTCCGCAATTGCACCTGGACTAAAGCCTTCATGTGATGCTAATGGCTGCCATCCGACGTCAGGACAAACTGCAGCCCTTTTTATAGCACTTTACTTGATTGCACTTGGAACCGGCGGTATCAAACCGTGTGTTTCATCTTTTGGTGCTGACCAATTTGATGAAAACGACGAGACTGAGAGGAAAAAGAAAAGCTCCTTTTTCAATTGGTTTTACTTCTCAATTAATATCGGTGCACTCATTGCTTCCTCGGTGTTGGTTTGGATACAGATGAATGTCGGATGGGGATGGGGTTTTGGAGTGCCTGGAGTTGCAATGGTTATCGCCATTATATTTTTCTTCATTGGTAGTAGATGGTATAGACTTCAAATACCTGGTGGAAGTCCTCTTACAAGGATTTGTCAAGTTATTGTTGCAGCATTTAGGAAACTTGGGCAACAAGTTCCAGATGATAAATCTCTTCTTTATGAGACTACTGATGTAGAATCTAACATCAAAGGGAGCCGGAAACTTGAACACACAAATGAATTGAAGTGTTTGGATAAGGCAGCAGTAGAGACAGAATCCGACCGGATAAAAGATTTACCGAATCCATGGAGGCTCTGCACAGTAACACAAGTCGAAGAACTCAAATCAATCGTTCGTTTACTCCCCGTTTGGGCATCACTGATAGCCTTTGCAACAGTATACAGTCAAATGGGAACCATGTTTGTGTTACAAGGCAACACAATGGATCAACACATTGGTCCTAAATTCAAAATTCCATCAGCTTCCCTCTCCCTTTTCGACACTCTAAGTGTCATCTTCTGGGCCCCGGTCTACGACCGTCTCATCGTCCCTTTCGCAAGAAAGTTCACCGGCCATGAACACGGATTCACACAGCTTCAAAGAATCGGAATCGGCCTGGTCATCTCCATCATTTCCATGATCGTGGCAGGAATTCTAGAAGTCATCCGCCTCGACATTGTCCGCAAAAAAAACTACTATGATCTCGAAACCATCCCTATGTCGATCTTCTGGCAAGTACCACAGTATTTCCTCGTAGGTGCAGCTGAAGTTTTCACTAATATCGGTCAGATGGAATTCTTTTATGGTCAGGCACCCGATGCTATGAGAAGTTTGTGTGCTGCACTTTCACTCACAACTAATGCATTGGGAAATTATGTGAGTACATTGCTTGTTACTATTGTCACAAAAGTTACTACAAGAAATGGAAGTCTTGGTTGGATTCCAGATAATATGAATAGGGGTCATCTTGATTACTTCTACTGGCTTTTGACAATTCTTAGTTTGATCAACTTCATTGTGTATCTATTGATTGCTAAGAGGTATACATACAAAAAAGTGACTCATCTTAGGTGA
Protein sequence

>Msa0629560

MSTNLVNYLEDRYGLGNAAAANTVTTWSGTCYITPLLGAFLADAYLGRYWTIASFSSIYVIGMALLTFSAIAPGLKPSCDANGCHPTSGQTAALFIALYLIALGTGGIKPCVSSFGADQFDENDETERKKKSSFFNWFYFSINIGALIASSVLVWIQMNVGWGWGFGVPGVAMVIAIIFFFIGSRWYRLQIPGGSPLTRICQVIVAAFRKLGQQVPDDKSLLYETTDVESNIKGSRKLEHTNELKCLDKAAVETESDRIKDLPNPWRLCTVTQVEELKSIVRLLPVWASLIAFATVYSQMGTMFVLQGNTMDQHIGPKFKIPSASLSLFDTLSVIFWAPVYDRLIVPFARKFTGHEHGFTQLQRIGIGLVISIISMIVAGILEVIRLDIVRKKNYYDLETIPMSIFWQVPQYFLVGAAEVFTNIGQMEFFYGQAPDAMRSLCAALSLTTNALGNYVSTLLVTIVTKVTTRNGSLGWIPDNMNRGHLDYFYWLLTILSLINFIVYLLIAKRYTYKKVTHLR*