AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0943870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0943870 MtrunA17_Chr6g0460641 90.588 85 8 0 1 85 1 85 3.15e-50 155
Msa0943870 MtrunA17_Chr6g0460651 53.289 152 15 3 1 152 4 99 4.78e-42 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTGCCTCTTATTCTTTA+TGG 0.062997 6_3:+19928511 Msa0943870:CDS
CAATAATAGGAAAATGTTAT+TGG 0.164891 6_3:+19928902 Msa0943870:intron
CAATAATAGGAGAGTGTTAT+TGG 0.218309 6_3:+19933057 Msa0943870:intron
ATGTTATTGGATTAAGTATT+GGG 0.250615 6_3:+19928915 Msa0943870:CDS
TTGATAAAGGAGAAGAATTC+AGG 0.251868 6_3:+19928948 Msa0943870:CDS
AAAGGAAACAAGAATGAATT+TGG 0.262043 6_3:+19933128 Msa0943870:CDS
GGTAAAGGAAAGGATGAATT+TGG 0.265021 6_3:+19928970 Msa0943870:CDS
GGGGAAGATTCATTTGATAA+AGG 0.323817 6_3:+19928935 Msa0943870:CDS
AATGCAAACTTCAATGGTTA+AGG 0.330001 6_3:+19928733 Msa0943870:CDS
TGCATCACTCAAACTCTTCC+TGG 0.355190 6_3:-19933204 None:intergenic
AACAAATTTCATGTCTTATG+AGG 0.357442 6_3:+19928377 Msa0943870:five_prime_UTR
GGATAAAAGAGAAGAGTTCT+TGG 0.397855 6_3:+19933104 Msa0943870:CDS
CACGTTAATGCAAACTTCAA+TGG 0.399282 6_3:+19928727 Msa0943870:CDS
CAAACTCTTCCTGGTGCCTT+AGG 0.399334 6_3:-19933195 None:intergenic
TGGTTGTTTGCTCCTGTCCC+TGG 0.404658 6_3:-19933165 None:intergenic
AATGTTATTGGATTAAGTAT+TGG 0.412576 6_3:+19928914 Msa0943870:CDS
AGAAAACCATAAAGAATAAG+AGG 0.424821 6_3:-19928517 None:intergenic
TTCCTGGTGCCTTAGGATCA+TGG 0.430874 6_3:-19933188 None:intergenic
TTGGAAATAGAAGACTATCC+AGG 0.442550 6_3:+19928989 Msa0943870:CDS
TTGGAAATAGAAGACTATCC+AGG 0.442550 6_3:+19933147 Msa0943870:CDS
AGTTCAAACTACACTAGTTA+AGG 0.442722 6_3:+19932904 Msa0943870:CDS
TAAAGAATAAGAGGCAGTGC+AGG 0.455063 6_3:-19928508 None:intergenic
TGGTTGTTTGCACCTGTCCC+TGG 0.458930 6_3:-19929007 None:intergenic
AGGAGAAGAATTCAGGGTAA+AGG 0.485386 6_3:+19928955 Msa0943870:CDS
AAGAGAAGAGTTCTTGGTAA+AGG 0.486551 6_3:+19933110 Msa0943870:CDS
AAGTAATGGAGAAGATTTGT+TGG 0.504754 6_3:+19933083 Msa0943870:CDS
AGTGTTATTGGATTAAGTAA+TGG 0.504914 6_3:+19933069 Msa0943870:CDS
TGATAAAGGAGAAGAATTCA+GGG 0.515012 6_3:+19928949 Msa0943870:CDS
CATTGAAGTTTGCATTAACG+TGG 0.532124 6_3:-19928726 None:intergenic
CACCATGATCCTAAGGCACC+AGG 0.552196 6_3:+19933186 Msa0943870:CDS
ATAGAAGACTATCCAGGGAC+AGG 0.554386 6_3:+19933153 Msa0943870:CDS
ATAGAAGACTATCCAGGGAC+AGG 0.563265 6_3:+19928995 Msa0943870:CDS
AAGAATTCAGGGTAAAGGAA+AGG 0.570547 6_3:+19928960 Msa0943870:CDS
TGGAAATAGAAGACTATCCA+GGG 0.571908 6_3:+19928990 Msa0943870:CDS
TGGAAATAGAAGACTATCCA+GGG 0.571908 6_3:+19933148 Msa0943870:CDS
AAACAACCACCATGATCCTA+AGG 0.578374 6_3:+19933179 Msa0943870:CDS
TGTTATTGGATTAAGTATTG+GGG 0.590218 6_3:+19928916 Msa0943870:CDS
AAAGAATAAGAGGCAGTGCA+GGG 0.628073 6_3:-19928507 None:intergenic
CGTGGATAAGATAAGAGCTG+AGG 0.644222 6_3:-19928450 None:intergenic
CTGGTGCCTTAGGATCATGG+TGG 0.713151 6_3:-19933185 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATAAAAAATAATA+AGG - chr6_3:19928636-19928655 None:intergenic 0.0%
!! ATATATTTATAAGTTCATAT+GGG - chr6_3:19928771-19928790 None:intergenic 10.0%
!! AATATATTTATAAGTTCATA+TGG - chr6_3:19928772-19928791 None:intergenic 10.0%
!!! ATATTTTAGTTTTATTATCA+TGG + chr6_3:19929340-19929359 Msa0943870:intron 10.0%
!! TTGAATATTAATAATACATT+TGG - chr6_3:19929436-19929455 None:intergenic 10.0%
!! ATGTATTATTAATATTCAAA+AGG + chr6_3:19929437-19929456 Msa0943870:intron 10.0%
!!! CTTATATTTATATAATTTGT+AGG - chr6_3:19929947-19929966 None:intergenic 10.0%
!!! ATTTTCAATTTATACTTTTA+AGG + chr6_3:19930160-19930179 Msa0943870:intron 10.0%
!! ACTTGAAAAAAATATATATT+GGG - chr6_3:19932149-19932168 None:intergenic 10.0%
!! AATAATAATAATAAGGATAT+GGG - chr6_3:19932797-19932816 None:intergenic 10.0%
!! AAATAATAATAATAAGGATA+TGG - chr6_3:19932798-19932817 None:intergenic 10.0%
!! ATTATCTTAAATATTCATAT+TGG - chr6_3:19932940-19932959 None:intergenic 10.0%
!! ATAAAAAATAATAAGGAGAT+GGG - chr6_3:19928629-19928648 None:intergenic 15.0%
!! AATAAAAAATAATAAGGAGA+TGG - chr6_3:19928630-19928649 None:intergenic 15.0%
!!! TTTTCTTTATTGAATTAGTT+TGG + chr6_3:19929292-19929311 Msa0943870:intron 15.0%
!!! TTTTTTTTTACAATTGTCAT+AGG - chr6_3:19929801-19929820 None:intergenic 15.0%
!!! TGATTTTTTTGTAGATTTTA+AGG + chr6_3:19930023-19930042 Msa0943870:intron 15.0%
!! AACAAAATATAATCTTTCAA+CGG + chr6_3:19931251-19931270 Msa0943870:intron 15.0%
!!! TTCAAAAAAAATTAGTTTCT+AGG - chr6_3:19931636-19931655 None:intergenic 15.0%
!! CACTTGAAAAAAATATATAT+TGG - chr6_3:19932150-19932169 None:intergenic 15.0%
!! TTTAAATTATTAACCGTAAA+TGG + chr6_3:19932765-19932784 Msa0943870:intron 15.0%
!! ATAATAATAATAAGGATATG+GGG - chr6_3:19932796-19932815 None:intergenic 15.0%
!!! TTTTTTTACTAATTTTTTGC+AGG + chr6_3:19932851-19932870 Msa0943870:intron 15.0%
!! ATTAGAATTTACTTATATAG+AGG - chr6_3:19932995-19933014 None:intergenic 15.0%
!!! TTTTCCATTTTATTTTTTGC+AGG + chr6_3:19928677-19928696 Msa0943870:intron 20.0%
!! TCTAACTATTAACCAAATTA+AGG + chr6_3:19928856-19928875 Msa0943870:intron 20.0%
!! CTAACTATTAACCAAATTAA+GGG + chr6_3:19928857-19928876 Msa0943870:intron 20.0%
!! CAATAATAGGAAAATGTTAT+TGG + chr6_3:19928902-19928921 Msa0943870:intron 20.0%
!! AATGTTATTGGATTAAGTAT+TGG + chr6_3:19928914-19928933 Msa0943870:CDS 20.0%
!! ATGTTATTGGATTAAGTATT+GGG + chr6_3:19928915-19928934 Msa0943870:CDS 20.0%
!!! ATTATGATTACCAATTTTGA+AGG + chr6_3:19929633-19929652 Msa0943870:intron 20.0%
!!! ATATTTTAGATCATTGTCAT+GGG - chr6_3:19929835-19929854 None:intergenic 20.0%
!!! TATATTTTAGATCATTGTCA+TGG - chr6_3:19929836-19929855 None:intergenic 20.0%
!!! ATATAATTTGTAGGCTAAAT+TGG - chr6_3:19929938-19929957 None:intergenic 20.0%
!! GATGAAATCTTATAATCAAA+GGG - chr6_3:19930265-19930284 None:intergenic 20.0%
!!! AAGTGTTTTGAAAATGTTTT+CGG - chr6_3:19930338-19930357 None:intergenic 20.0%
!!! AAAACATTTTCAAAACACTT+GGG + chr6_3:19930338-19930357 Msa0943870:intron 20.0%
!! AAAATCTTTCACAAATATTC+CGG - chr6_3:19930394-19930413 None:intergenic 20.0%
!!! TGAAATAATTTTAACCACAA+CGG + chr6_3:19930441-19930460 Msa0943870:intron 20.0%
!! GATGAAATATAATCTTTCAA+CGG + chr6_3:19931298-19931317 Msa0943870:intron 20.0%
!! AATAATGTAAATGTTTGATG+TGG + chr6_3:19931460-19931479 Msa0943870:intron 20.0%
!! AAAATAGTAGGATTCTTTAT+TGG - chr6_3:19931493-19931512 None:intergenic 20.0%
!!! CTGCATAAATAATAGTTTTT+AGG - chr6_3:19931668-19931687 None:intergenic 20.0%
!!! TTTTTTTCAAGTGTGTTAAT+CGG + chr6_3:19932157-19932176 Msa0943870:intron 20.0%
!!! TGACAATTTGTTTATAAATG+GGG - chr6_3:19932277-19932296 None:intergenic 20.0%
!!! CTGACAATTTGTTTATAAAT+GGG - chr6_3:19932278-19932297 None:intergenic 20.0%
!!! TCTGACAATTTGTTTATAAA+TGG - chr6_3:19932279-19932298 None:intergenic 20.0%
!!! ATATAGCTTTTGTCAATAAT+AGG + chr6_3:19933044-19933063 Msa0943870:intron 20.0%
! AACAAATTTCATGTCTTATG+AGG + chr6_3:19928377-19928396 Msa0943870:five_prime_UTR 25.0%
! AGAAAACCATAAAGAATAAG+AGG - chr6_3:19928520-19928539 None:intergenic 25.0%
! TCTTCCTGCAAAAAATAAAA+TGG - chr6_3:19928684-19928703 None:intergenic 25.0%
! AATAAGTTAGACCCTTAATT+TGG - chr6_3:19928871-19928890 None:intergenic 25.0%
! TTAATGCCTTTCTCAATAAT+AGG + chr6_3:19928889-19928908 Msa0943870:intron 25.0%
!! CATTTTCCTATTATTGAGAA+AGG - chr6_3:19928898-19928917 None:intergenic 25.0%
!! TGTTATTGGATTAAGTATTG+GGG + chr6_3:19928916-19928935 Msa0943870:CDS 25.0%
! ATTATTACATACATGTCATG+TGG + chr6_3:19929097-19929116 Msa0943870:intron 25.0%
! TTATTACATACATGTCATGT+GGG + chr6_3:19929098-19929117 Msa0943870:intron 25.0%
!! GGGACATACTTATATATTTT+TGG + chr6_3:19929118-19929137 Msa0943870:intron 25.0%
! TATCATCCATTAGAAAATAG+TGG - chr6_3:19929163-19929182 None:intergenic 25.0%
! GTTATTCCCTTAATATGATT+TGG + chr6_3:19929474-19929493 Msa0943870:intron 25.0%
! TATGATTAAGCCTTCAAAAT+TGG - chr6_3:19929646-19929665 None:intergenic 25.0%
! AGATCACAAAAAGATACAAT+CGG - chr6_3:19929738-19929757 None:intergenic 25.0%
! TAAAATATTGCAGTGATGTT+AGG - chr6_3:19929907-19929926 None:intergenic 25.0%
! GGATGAAATCTTATAATCAA+AGG - chr6_3:19930266-19930285 None:intergenic 25.0%
!! ACGCACAAAAAATATTTTGT+GGG - chr6_3:19930287-19930306 None:intergenic 25.0%
!! TACGCACAAAAAATATTTTG+TGG - chr6_3:19930288-19930307 None:intergenic 25.0%
!!! TTTTGTGCGTAAATTTGTTT+TGG + chr6_3:19930297-19930316 Msa0943870:intron 25.0%
!!! AGTGTTTTGAAAATGTTTTC+GGG - chr6_3:19930337-19930356 None:intergenic 25.0%
!! GAAAACATTTTCAAAACACT+TGG + chr6_3:19930337-19930356 Msa0943870:intron 25.0%
!!! TTTTCGAATTTTAACCACAA+CGG + chr6_3:19930410-19930429 Msa0943870:intron 25.0%
!!! ACATTGAATTTTAACCACAA+CGG + chr6_3:19930504-19930523 Msa0943870:intron 25.0%
!!! ATTGACAATTTTAACCACAA+CGG + chr6_3:19930569-19930588 Msa0943870:intron 25.0%
! ATTTCACAAATATTTCGTTG+TGG - chr6_3:19930617-19930636 None:intergenic 25.0%
!!! ACATTGAATTTTAACCACAA+CGG + chr6_3:19930504-19930523 Msa0943870:intron 25.0%
!!! TTTGACAATTTTAACCACAA+CGG + chr6_3:19930700-19930719 Msa0943870:intron 25.0%
!! GACAATTTGTTTATAAGTGA+GGG - chr6_3:19930858-19930877 None:intergenic 25.0%
!! TGACAATTTGTTTATAAGTG+AGG - chr6_3:19930859-19930878 None:intergenic 25.0%
! TCACTTATAAACAAATTGTC+AGG + chr6_3:19930858-19930877 Msa0943870:intron 25.0%
! TACATATTCAGTAGGTTATT+TGG + chr6_3:19931375-19931394 Msa0943870:intron 25.0%
! ACATATTCAGTAGGTTATTT+GGG + chr6_3:19931376-19931395 Msa0943870:intron 25.0%
!! ATCTCTAAAAATTTGACCAA+AGG - chr6_3:19931607-19931626 None:intergenic 25.0%
!!! ATAACATACTTTTGGATTAG+GGG - chr6_3:19931812-19931831 None:intergenic 25.0%
!! CATAACATACTTTTGGATTA+GGG - chr6_3:19931813-19931832 None:intergenic 25.0%
!! ACATAACATACTTTTGGATT+AGG - chr6_3:19931814-19931833 None:intergenic 25.0%
!! TAATCCAAAAGTATGTTATG+TGG + chr6_3:19931813-19931832 Msa0943870:intron 25.0%
! ATTGTTGTGTATGCTAATAT+GGG - chr6_3:19931852-19931871 None:intergenic 25.0%
!! TTTTGTGAACAAACCATATT+AGG - chr6_3:19931875-19931894 None:intergenic 25.0%
! CAAAAACAAAAGAAGATAGA+AGG - chr6_3:19931965-19931984 None:intergenic 25.0%
! ACAAGAAAACATAAGATTGT+AGG + chr6_3:19932062-19932081 Msa0943870:intron 25.0%
! AGAGAGATAATGAAAAAACA+GGG - chr6_3:19932101-19932120 None:intergenic 25.0%
! AAGAGAGATAATGAAAAAAC+AGG - chr6_3:19932102-19932121 None:intergenic 25.0%
!! GACAATTTGTTTATAAATGG+GGG - chr6_3:19932276-19932295 None:intergenic 25.0%
! TTTCTGTGTGAAACAATATA+TGG - chr6_3:19932471-19932490 None:intergenic 25.0%
!! AACATCAACTTGAACATTTT+TGG - chr6_3:19932496-19932515 None:intergenic 25.0%
!!! TATAAAGCATTGTATTCACA+CGG + chr6_3:19932582-19932601 Msa0943870:intron 25.0%
! CATGTTGAATAAACAAGAAA+AGG - chr6_3:19932646-19932665 None:intergenic 25.0%
! AGAAAACCATAAAGAAAAAG+AGG - chr6_3:19932692-19932711 None:intergenic 25.0%
!! TTTTTCTATGCATACTTGTT+TGG - chr6_3:19932743-19932762 None:intergenic 25.0%
!! AGTGTTATTGGATTAAGTAA+TGG + chr6_3:19933069-19933088 Msa0943870:CDS 25.0%
! AAAGGAAACAAGAATGAATT+TGG + chr6_3:19933128-19933147 Msa0943870:CDS 25.0%
GTTGAACAAAAAAGAAAACG+TGG - chr6_3:19928471-19928490 None:intergenic 30.0%
AATGCAAACTTCAATGGTTA+AGG + chr6_3:19928733-19928752 Msa0943870:CDS 30.0%
TAGAAGCAAAATATAGAGCT+TGG - chr6_3:19928840-19928859 None:intergenic 30.0%
TTGATAAAGGAGAAGAATTC+AGG + chr6_3:19928948-19928967 Msa0943870:CDS 30.0%
TGATAAAGGAGAAGAATTCA+GGG + chr6_3:19928949-19928968 Msa0943870:CDS 30.0%
! TTTCAGCCACTATTTTCTAA+TGG + chr6_3:19929154-19929173 Msa0943870:intron 30.0%
ACTTGCATTAAAATGAAGAG+TGG + chr6_3:19929317-19929336 Msa0943870:intron 30.0%
AGCGATCCAAATCATATTAA+GGG - chr6_3:19929483-19929502 None:intergenic 30.0%
ACATTCATGCACTTTGTAAA+AGG + chr6_3:19929561-19929580 Msa0943870:intron 30.0%
CATTCATGCACTTTGTAAAA+GGG + chr6_3:19929562-19929581 Msa0943870:intron 30.0%
TTTCGACTTTAACCATCAAA+AGG - chr6_3:19929600-19929619 None:intergenic 30.0%
! GTATCTTTTTGTGATCTTAG+TGG + chr6_3:19929741-19929760 Msa0943870:intron 30.0%
TAGGAAATTGTTTCAGCATA+AGG - chr6_3:19929782-19929801 None:intergenic 30.0%
TCCTTGCTACTAAGATATTA+TGG + chr6_3:19929989-19930008 Msa0943870:intron 30.0%
TCCATAATATCTTAGTAGCA+AGG - chr6_3:19929993-19930012 None:intergenic 30.0%
AATCAAAGGGATAAGTGTAA+AGG - chr6_3:19930252-19930271 None:intergenic 30.0%
! AATATTCCGGTTTACGATTT+TGG - chr6_3:19930381-19930400 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
ATTTCACAAATATTCCGTTG+TGG - chr6_3:19930427-19930446 None:intergenic 30.0%
!! TTTTTGACTCTTAGAAAACG+TGG + chr6_3:19930785-19930804 Msa0943870:intron 30.0%
TGATACCATCTTAGAAATTG+TGG + chr6_3:19931020-19931039 Msa0943870:intron 30.0%
TTATGTCACATGTGAATTTG+CGG - chr6_3:19931136-19931155 None:intergenic 30.0%
GTAAATGTTTGATGTGGATT+CGG + chr6_3:19931466-19931485 Msa0943870:intron 30.0%
AAAAAGTAAAACACCACCTT+TGG + chr6_3:19931588-19931607 Msa0943870:intron 30.0%
TCTAAAAATTTGACCAAAGG+TGG - chr6_3:19931604-19931623 None:intergenic 30.0%
ATAGATGAATTCGAGTACTT+TGG - chr6_3:19931766-19931785 None:intergenic 30.0%
GATTGTTGTGTATGCTAATA+TGG - chr6_3:19931853-19931872 None:intergenic 30.0%
CATACACAACAATCCTAATA+TGG + chr6_3:19931859-19931878 Msa0943870:intron 30.0%
GAGAGATAATGAAAAAACAG+GGG - chr6_3:19932100-19932119 None:intergenic 30.0%
TATGATTAATCATGTCGACA+AGG + chr6_3:19932386-19932405 Msa0943870:intron 30.0%
! GATAAGCTTAAAAGTTGATC+AGG + chr6_3:19932417-19932436 Msa0943870:intron 30.0%
!! TCAAGTTGATGTTGACTTAA+AGG + chr6_3:19932503-19932522 Msa0943870:intron 30.0%
! AAAAGGTAGATAAGAGCATA+GGG - chr6_3:19932629-19932648 None:intergenic 30.0%
ATATGGGGTTATTCCATTTA+CGG - chr6_3:19932781-19932800 None:intergenic 30.0%
!!! TGCAGGAAATTTTTTCTCAA+AGG + chr6_3:19932868-19932887 Msa0943870:intron 30.0%
AGTTCAAACTACACTAGTTA+AGG + chr6_3:19932904-19932923 Msa0943870:CDS 30.0%
!! CAATAATAGGAGAGTGTTAT+TGG + chr6_3:19933057-19933076 Msa0943870:intron 30.0%
! AAGTAATGGAGAAGATTTGT+TGG + chr6_3:19933083-19933102 Msa0943870:CDS 30.0%
! TGCAGGAAGATTTTTGTCAA+AGG + chr6_3:19928694-19928713 Msa0943870:intron 35.0%
CATTGAAGTTTGCATTAACG+TGG - chr6_3:19928729-19928748 None:intergenic 35.0%
CACGTTAATGCAAACTTCAA+TGG + chr6_3:19928727-19928746 Msa0943870:CDS 35.0%
CAAAATATAGAGCTTGGTAG+AGG - chr6_3:19928834-19928853 None:intergenic 35.0%
GGGGAAGATTCATTTGATAA+AGG + chr6_3:19928935-19928954 Msa0943870:CDS 35.0%
AAGAATTCAGGGTAAAGGAA+AGG + chr6_3:19928960-19928979 Msa0943870:CDS 35.0%
GGTAAAGGAAAGGATGAATT+TGG + chr6_3:19928970-19928989 Msa0943870:CDS 35.0%
TTGGAAATAGAAGACTATCC+AGG + chr6_3:19928989-19929008 Msa0943870:CDS 35.0%
TGGAAATAGAAGACTATCCA+GGG + chr6_3:19928990-19929009 Msa0943870:CDS 35.0%
TCCCATTATCACAACTATGT+AGG + chr6_3:19929376-19929395 Msa0943870:intron 35.0%
GCCTACATAGTTGTGATAAT+GGG - chr6_3:19929380-19929399 None:intergenic 35.0%
CAGCGATCCAAATCATATTA+AGG - chr6_3:19929484-19929503 None:intergenic 35.0%
! TCAAGCTTCTATCCTTTTGA+TGG + chr6_3:19929585-19929604 Msa0943870:intron 35.0%
CAGACATCACTAAATAACAG+TGG - chr6_3:19929681-19929700 None:intergenic 35.0%
TTTGTAGGCTAAATTGGTGT+AGG - chr6_3:19929932-19929951 None:intergenic 35.0%
! CCTAACCACAATTTCTAAGA+TGG - chr6_3:19931028-19931047 None:intergenic 35.0%
CCATCTTAGAAATTGTGGTT+AGG + chr6_3:19931025-19931044 Msa0943870:intron 35.0%
!! TGAGTTGGCTTTGATATTGT+CGG - chr6_3:19931336-19931355 None:intergenic 35.0%
ATATCAAAGCCAACTCAATG+AGG + chr6_3:19931339-19931358 Msa0943870:intron 35.0%
CTTTGGACACTTTAGGTAAA+AGG - chr6_3:19931749-19931768 None:intergenic 35.0%
! AAAAAGAGAAACAGAAGTGC+AGG - chr6_3:19931926-19931945 None:intergenic 35.0%
! AGGTGCAACACTAATTTTTC+AGG + chr6_3:19932030-19932049 Msa0943870:intron 35.0%
! GGTGCAACACTAATTTTTCA+GGG + chr6_3:19932031-19932050 Msa0943870:intron 35.0%
!! GTGCAACACTAATTTTTCAG+GGG + chr6_3:19932032-19932051 Msa0943870:intron 35.0%
!!! TGCAACACTAATTTTTCAGG+GGG + chr6_3:19932033-19932052 Msa0943870:intron 35.0%
AGATAATGAAAAAACAGGGG+AGG - chr6_3:19932097-19932116 None:intergenic 35.0%
! AAGAAATTATCGATTGAGCC+CGG + chr6_3:19932201-19932220 Msa0943870:intron 35.0%
AAGTGTTAAGAGTCCTACAT+CGG - chr6_3:19932313-19932332 None:intergenic 35.0%
CATAGGGATATAGTGATGAT+AGG - chr6_3:19932613-19932632 None:intergenic 35.0%
! GAAAAGGTAGATAAGAGCAT+AGG - chr6_3:19932630-19932649 None:intergenic 35.0%
GGATAAAAGAGAAGAGTTCT+TGG + chr6_3:19933104-19933123 Msa0943870:CDS 35.0%
AAGAGAAGAGTTCTTGGTAA+AGG + chr6_3:19933110-19933129 Msa0943870:CDS 35.0%
TTGGAAATAGAAGACTATCC+AGG + chr6_3:19928989-19929008 Msa0943870:CDS 35.0%
TGGAAATAGAAGACTATCCA+GGG + chr6_3:19928990-19929009 Msa0943870:CDS 35.0%
AAAGAATAAGAGGCAGTGCA+GGG - chr6_3:19928510-19928529 None:intergenic 40.0%
TAAAGAATAAGAGGCAGTGC+AGG - chr6_3:19928511-19928530 None:intergenic 40.0%
GCACTGCCTCTTATTCTTTA+TGG + chr6_3:19928511-19928530 Msa0943870:CDS 40.0%
AGGAGAAGAATTCAGGGTAA+AGG + chr6_3:19928955-19928974 Msa0943870:CDS 40.0%
TTCATTGCTCAAACTCTTCC+TGG - chr6_3:19929049-19929068 None:intergenic 40.0%
CGCCTACATAGTTGTGATAA+TGG - chr6_3:19929381-19929400 None:intergenic 40.0%
! TGATTTGGATCGCTGTTGTT+TGG + chr6_3:19929489-19929508 Msa0943870:intron 40.0%
! GATTTGGATCGCTGTTGTTT+GGG + chr6_3:19929490-19929509 Msa0943870:intron 40.0%
TTTGGGTCATATGGAAAGAG+CGG + chr6_3:19929507-19929526 Msa0943870:intron 40.0%
!!! GCGCATTTTCTAGAACAAAG+AGG + chr6_3:19929535-19929554 Msa0943870:intron 40.0%
! ACACTTGGGTTAAGTTGTCT+TGG + chr6_3:19930352-19930371 Msa0943870:intron 40.0%
TGGTAGCCAAAATCGTAAAC+CGG + chr6_3:19930372-19930391 Msa0943870:intron 40.0%
TGACTCTTAGAAAACGTGGT+TGG + chr6_3:19930789-19930808 Msa0943870:intron 40.0%
GACTCTTAGAAAACGTGGTT+GGG + chr6_3:19930790-19930809 Msa0943870:intron 40.0%
! TTAAGAGTCTCACATCGGTT+AGG - chr6_3:19930890-19930909 None:intergenic 40.0%
GTGTGTTAAGAGTCTCACAT+CGG - chr6_3:19930895-19930914 None:intergenic 40.0%
!! CCTCACAAATCGGTTTTATG+GGG - chr6_3:19931061-19931080 None:intergenic 40.0%
!! GCCTCACAAATCGGTTTTAT+GGG - chr6_3:19931062-19931081 None:intergenic 40.0%
! CAAGGATTTTCATAGAGCCT+GGG + chr6_3:19931099-19931118 Msa0943870:intron 40.0%
!!! TTGCGGTAATTTTTTTGCCC+AGG - chr6_3:19931119-19931138 None:intergenic 40.0%
! CCAACTCAATGAGGTTTGTT+GGG + chr6_3:19931348-19931367 Msa0943870:intron 40.0%
!! CAACTCAATGAGGTTTGTTG+GGG + chr6_3:19931349-19931368 Msa0943870:intron 40.0%
!! AACTCAATGAGGTTTGTTGG+GGG + chr6_3:19931350-19931369 Msa0943870:intron 40.0%
! TGGGGGTATACATATTCAGT+AGG + chr6_3:19931367-19931386 Msa0943870:intron 40.0%
TTCAATTCAGTGGCGTATCT+AGG + chr6_3:19931410-19931429 Msa0943870:intron 40.0%
TCGAGTACTTTGGACACTTT+AGG - chr6_3:19931756-19931775 None:intergenic 40.0%
! TGGGCCACATAACATACTTT+TGG - chr6_3:19931820-19931839 None:intergenic 40.0%
GTGTATGCTAATATGGGCTT+GGG - chr6_3:19931846-19931865 None:intergenic 40.0%
TGTGTATGCTAATATGGGCT+TGG - chr6_3:19931847-19931866 None:intergenic 40.0%
! TCAAGTGTGTTAATCGGCTT+TGG + chr6_3:19932163-19932182 Msa0943870:intron 40.0%
! CAAGTGTGTTAATCGGCTTT+GGG + chr6_3:19932164-19932183 Msa0943870:intron 40.0%
! AGAAATTATCGATTGAGCCC+GGG + chr6_3:19932202-19932221 Msa0943870:intron 40.0%
! TTAAGAGTCCTACATCGGTT+AGG - chr6_3:19932308-19932327 None:intergenic 40.0%
! TAAAGAAAAAGAGGAAGCGC+AGG - chr6_3:19932683-19932702 None:intergenic 40.0%
! GCGCTTCCTCTTTTTCTTTA+TGG + chr6_3:19932683-19932702 Msa0943870:intron 40.0%
AAACAACCACCATGATCCTA+AGG + chr6_3:19933179-19933198 Msa0943870:CDS 40.0%
CGTGGATAAGATAAGAGCTG+AGG - chr6_3:19928453-19928472 None:intergenic 45.0%
ATAGAAGACTATCCAGGGAC+AGG + chr6_3:19928995-19929014 Msa0943870:CDS 45.0%
TTGCTCAAACTCTTCCTGGT+GGG - chr6_3:19929045-19929064 None:intergenic 45.0%
ATTGCTCAAACTCTTCCTGG+TGG - chr6_3:19929046-19929065 None:intergenic 45.0%
! TCGCTGTTGTTTGGGTCATA+TGG + chr6_3:19929498-19929517 Msa0943870:intron 45.0%
CTAACACAACCCCACAAAAC+CGG + chr6_3:19930814-19930833 Msa0943870:intron 45.0%
GCTTCGTTCGTGGACATAAA+TGG + chr6_3:19930938-19930957 Msa0943870:intron 45.0%
TCGTTCGTGGACATAAATGG+TGG + chr6_3:19930941-19930960 Msa0943870:intron 45.0%
CGTTCGTGGACATAAATGGT+GGG + chr6_3:19930942-19930961 Msa0943870:intron 45.0%
TGCTATCAGGTTTCCGCTAT+CGG - chr6_3:19930972-19930991 None:intergenic 45.0%
GAGCCTCTTCAAGATCCATT+GGG - chr6_3:19931000-19931019 None:intergenic 45.0%
AGAGCCTCTTCAAGATCCAT+TGG - chr6_3:19931001-19931020 None:intergenic 45.0%
!! CGGTTTTATGGGGTTGTGTT+AGG - chr6_3:19931051-19931070 None:intergenic 45.0%
!! CCCCATAAAACCGATTTGTG+AGG + chr6_3:19931058-19931077 Msa0943870:intron 45.0%
!! CGCCTCACAAATCGGTTTTA+TGG - chr6_3:19931063-19931082 None:intergenic 45.0%
!! TAAAACCGATTTGTGAGGCG+AGG + chr6_3:19931063-19931082 Msa0943870:intron 45.0%
! GCAAGGATTTTCATAGAGCC+TGG + chr6_3:19931098-19931117 Msa0943870:intron 45.0%
GCCAACTCAATGAGGTTTGT+TGG + chr6_3:19931347-19931366 Msa0943870:intron 45.0%
CCCAACAAACCTCATTGAGT+TGG - chr6_3:19931351-19931370 None:intergenic 45.0%
! CAGTAGGTTATTTGGGTTCG+CGG + chr6_3:19931383-19931402 Msa0943870:intron 45.0%
TCGCGGTACATTCAATTCAG+TGG + chr6_3:19931400-19931419 Msa0943870:intron 45.0%
CTAATATGGGCTTGGGTCTT+GGG - chr6_3:19931839-19931858 None:intergenic 45.0%
GGACAAAGAAGAAGAAGGTG+TGG - chr6_3:19931905-19931924 None:intergenic 45.0%
GTGCAGGACAAAGAAGAAGA+AGG - chr6_3:19931910-19931929 None:intergenic 45.0%
GTGTGTGAGAGAGAAACTCA+AGG + chr6_3:19932010-19932029 Msa0943870:intron 45.0%
ATAGAAGACTATCCAGGGAC+AGG + chr6_3:19928995-19929014 Msa0943870:CDS 45.0%
TGCATCACTCAAACTCTTCC+TGG - chr6_3:19933207-19933226 None:intergenic 45.0%
!! TTAAATTATTTATTTGTATA+TGG + chr6_3:19928597-19928616 Msa0943870:intron 5.0%
!! TTAAAATTATTAAAAATAGT+AGG - chr6_3:19931505-19931524 None:intergenic 5.0%
!! TTTACAATAATAAAAATTAA+TGG - chr6_3:19931549-19931568 None:intergenic 5.0%
!! ACTAAAAAATAATAATAATA+AGG - chr6_3:19932804-19932823 None:intergenic 5.0%
!! TAATTACTTAAATTAAATTA+AGG + chr6_3:19933011-19933030 Msa0943870:intron 5.0%
!! AATTACTTAAATTAAATTAA+GGG + chr6_3:19933012-19933031 Msa0943870:intron 5.0%
!! AAACTCTTCCTGGTGGGTTG+GGG - chr6_3:19929039-19929058 None:intergenic 50.0%
!! CAAACTCTTCCTGGTGGGTT+GGG - chr6_3:19929040-19929059 None:intergenic 50.0%
! TCAAACTCTTCCTGGTGGGT+TGG - chr6_3:19929041-19929060 None:intergenic 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr6_3:19930816-19930835 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr6_3:19930827-19930846 None:intergenic 50.0%
! GTCTCACATCGGTTAGGAGT+TGG - chr6_3:19930884-19930903 None:intergenic 50.0%
!! CAATAGTGCTGGTTGTGAGG+GGG - chr6_3:19930917-19930936 None:intergenic 50.0%
!! CCAATAGTGCTGGTTGTGAG+GGG - chr6_3:19930918-19930937 None:intergenic 50.0%
!! CCCAATAGTGCTGGTTGTGA+GGG - chr6_3:19930919-19930938 None:intergenic 50.0%
CCCTCACAACCAGCACTATT+GGG + chr6_3:19930916-19930935 Msa0943870:intron 50.0%
! TCGTGGACATAAATGGTGGG+TGG + chr6_3:19930945-19930964 Msa0943870:intron 50.0%
AGCGGAAACCTGATAGCATG+TGG + chr6_3:19930974-19930993 Msa0943870:intron 50.0%
TGGCCCAATGGATCTTGAAG+AGG + chr6_3:19930994-19931013 Msa0943870:intron 50.0%
CTGATCCTCGCCTCACAAAT+CGG - chr6_3:19931071-19931090 None:intergenic 50.0%
ATTTGTGAGGCGAGGATCAG+TGG + chr6_3:19931071-19931090 Msa0943870:intron 50.0%
TATTTCTCTACTGCACCCCC+TGG - chr6_3:19931444-19931463 None:intergenic 50.0%
GCTAATATGGGCTTGGGTCT+TGG - chr6_3:19931840-19931859 None:intergenic 50.0%
GACCAACTCCTAACCGATGT+AGG + chr6_3:19932297-19932316 Msa0943870:intron 50.0%
! GTCCTACATCGGTTAGGAGT+TGG - chr6_3:19932302-19932321 None:intergenic 50.0%
TTCCTGGTGCCTTAGGATCA+TGG - chr6_3:19933191-19933210 None:intergenic 50.0%
CAAACTCTTCCTGGTGCCTT+AGG - chr6_3:19933198-19933217 None:intergenic 50.0%
TGGTTGTTTGCACCTGTCCC+TGG - chr6_3:19929010-19929029 None:intergenic 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr6_3:19930826-19930845 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr6_3:19930828-19930847 None:intergenic 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr6_3:19930828-19930847 Msa0943870:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr6_3:19930836-19930855 None:intergenic 55.0%
CCCCTCACAACCAGCACTAT+TGG + chr6_3:19930915-19930934 Msa0943870:intron 55.0%
!! GCCCAATAGTGCTGGTTGTG+AGG - chr6_3:19930920-19930939 None:intergenic 55.0%
CGAACGAAGCCCAATAGTGC+TGG - chr6_3:19930928-19930947 None:intergenic 55.0%
GCACTATTGGGCTTCGTTCG+TGG + chr6_3:19930928-19930947 Msa0943870:intron 55.0%
!! AATGGTGGGTGGTCCGATAG+CGG + chr6_3:19930956-19930975 Msa0943870:intron 55.0%
CCATTGGGCCACATGCTATC+AGG - chr6_3:19930985-19931004 None:intergenic 55.0%
CCTGATAGCATGTGGCCCAA+TGG + chr6_3:19930982-19931001 Msa0943870:intron 55.0%
! GTATCTAGGACCCTGGTCCA+GGG + chr6_3:19931424-19931443 Msa0943870:intron 55.0%
! TATCTAGGACCCTGGTCCAG+GGG + chr6_3:19931425-19931444 Msa0943870:intron 55.0%
! GAAGAAGAAGGTGTGGCGTC+TGG - chr6_3:19931898-19931917 None:intergenic 55.0%
TGGTTGTTTGCTCCTGTCCC+TGG - chr6_3:19933168-19933187 None:intergenic 55.0%
CTGGTGCCTTAGGATCATGG+TGG - chr6_3:19933188-19933207 None:intergenic 55.0%
! CACCATGATCCTAAGGCACC+AGG + chr6_3:19933186-19933205 Msa0943870:CDS 55.0%
!! TTCCTGGTGGGTTGGGGTCA+TGG - chr6_3:19929033-19929052 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr6_3:19930823-19930842 Msa0943870:intron 60.0%
TGTGAGGCGAGGATCAGTGG+CGG + chr6_3:19931074-19931093 Msa0943870:intron 60.0%
! CAGTGGCGTATCTAGGACCC+TGG + chr6_3:19931417-19931436 Msa0943870:intron 60.0%
! CGTATCTAGGACCCTGGTCC+AGG + chr6_3:19931423-19931442 Msa0943870:intron 60.0%
! ATCTAGGACCCTGGTCCAGG+GGG + chr6_3:19931426-19931445 Msa0943870:intron 60.0%
ATGGGGGCAATCCTCACCAG+TGG - chr6_3:19932260-19932279 None:intergenic 60.0%
!! CTGGTGGGTTGGGGTCATGG+TGG - chr6_3:19929030-19929049 None:intergenic 65.0%
CACCATGACCCCAACCCACC+AGG + chr6_3:19929028-19929047 Msa0943870:intron 65.0%
! CGAGGATCAGTGGCGGAGCA+AGG + chr6_3:19931081-19931100 Msa0943870:intron 65.0%
CTACTGCACCCCCTGGACCA+GGG - chr6_3:19931437-19931456 None:intergenic 65.0%
TCTACTGCACCCCCTGGACC+AGG - chr6_3:19931438-19931457 None:intergenic 65.0%
CGGTAGATCCGCCACTGGTG+AGG + chr6_3:19932246-19932265 Msa0943870:intron 65.0%
GGGGCAATCCTCACCAGTGG+CGG - chr6_3:19932257-19932276 None:intergenic 65.0%
ATTGAGCCCGGGCGAGTGCC+CGG + chr6_3:19932213-19932232 Msa0943870:intron 70.0%
!! CCAGTGGCGGATCTACCGCC+CGG - chr6_3:19932244-19932263 None:intergenic 70.0%
TTGAGCCCGGGCGAGTGCCC+GGG + chr6_3:19932214-19932233 Msa0943870:intron 75.0%
ATCTACCGCCCGGCGACCCC+GGG - chr6_3:19932234-19932253 None:intergenic 75.0%
GATCTACCGCCCGGCGACCC+CGG - chr6_3:19932235-19932254 None:intergenic 75.0%
CCGGGCGGTAGATCCGCCAC+TGG + chr6_3:19932241-19932260 Msa0943870:intron 75.0%
! TGAGCCCGGGCGAGTGCCCG+GGG + chr6_3:19932215-19932234 Msa0943870:intron 80.0%
! GCGACCCCGGGCACTCGCCC+GGG - chr6_3:19932222-19932241 None:intergenic 85.0%
! GGCGACCCCGGGCACTCGCC+CGG - chr6_3:19932223-19932242 None:intergenic 85.0%
! GGGCGAGTGCCCGGGGTCGC+CGG + chr6_3:19932222-19932241 Msa0943870:intron 85.0%
! GGCGAGTGCCCGGGGTCGCC+GGG + chr6_3:19932223-19932242 Msa0943870:intron 85.0%
! GAGTGCCCGGGGTCGCCGGG+CGG + chr6_3:19932226-19932245 Msa0943870:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 19928375 19933272 19928375 ID=Msa0943870;Name=Msa0943870
chr6_3 mRNA 19928375 19933272 19928375 ID=Msa0943870-mRNA-1;Parent=Msa0943870;Name=Msa0943870-mRNA-1;_AED=0.26;_eAED=0.26;_QI=116|0.5|0.6|1|1|1|5|54|152
chr6_3 exon 19928375 19928578 19928375 ID=Msa0943870-mRNA-1:exon:5978;Parent=Msa0943870-mRNA-1
chr6_3 exon 19928699 19928757 19928699 ID=Msa0943870-mRNA-1:exon:5979;Parent=Msa0943870-mRNA-1
chr6_3 exon 19928911 19929016 19928911 ID=Msa0943870-mRNA-1:exon:5980;Parent=Msa0943870-mRNA-1
chr6_3 exon 19932873 19932925 19932873 ID=Msa0943870-mRNA-1:exon:5981;Parent=Msa0943870-mRNA-1
chr6_3 exon 19933066 19933272 19933066 ID=Msa0943870-mRNA-1:exon:5982;Parent=Msa0943870-mRNA-1
chr6_3 five_prime_UTR 19928375 19928490 19928375 ID=Msa0943870-mRNA-1:five_prime_utr;Parent=Msa0943870-mRNA-1
chr6_3 CDS 19928491 19928578 19928491 ID=Msa0943870-mRNA-1:cds;Parent=Msa0943870-mRNA-1
chr6_3 CDS 19928699 19928757 19928699 ID=Msa0943870-mRNA-1:cds;Parent=Msa0943870-mRNA-1
chr6_3 CDS 19928911 19929016 19928911 ID=Msa0943870-mRNA-1:cds;Parent=Msa0943870-mRNA-1
chr6_3 CDS 19932873 19932925 19932873 ID=Msa0943870-mRNA-1:cds;Parent=Msa0943870-mRNA-1
chr6_3 CDS 19933066 19933218 19933066 ID=Msa0943870-mRNA-1:cds;Parent=Msa0943870-mRNA-1
chr6_3 three_prime_UTR 19933219 19933272 19933219 ID=Msa0943870-mRNA-1:three_prime_utr;Parent=Msa0943870-mRNA-1
Gene Sequence

>Msa0943870

ATGTTCAACAAATTTGCCCTGCACTGCCTCTTATTCTTTATGGTTTTCTCATGTCTTCTTCTTTCATCTTCTTCTCTACAAACAACAAGAAGATTTTTGTCAAAGGATGAAAAATCCACGTTAATGCAAACTTCAATGGTTAAGGTTGAAAATGTTATTGGATTAAGTATTGGGGAAGATTCATTTGATAAAGGAGAAGAATTCAGGGTAAAGGAAAGGATGAATTTGGAAATAGAAGACTATCCAGGGACAGGAAATTTTTTCTCAAAGGATGAAAAATCATCAGTTCAAACTACACTAGTTAAGGAGAGTGTTATTGGATTAAGTAATGGAGAAGATTTGTTGGATAAAAGAGAAGAGTTCTTGGTAAAGGAAACAAGAATGAATTTGGAAATAGAAGACTATCCAGGGACAGGAGCAAACAACCACCATGATCCTAAGGCACCAGGAAGAGTTTGA

Protein sequence

>Msa0943870

MFNKFALHCLLFFMVFSCLLLSSSSLQTTRRFLSKDEKSTLMQTSMVKVENVIGLSIGEDSFDKGEEFRVKERMNLEIEDYPGTGNFFSKDEKSSVQTTLVKESVIGLSNGEDLLDKREEFLVKETRMNLEIEDYPGTGANNHHDPKAPGRV*