AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376070 MtrunA17_Chr7g0260971 98.165 218 4 0 1 218 1 218 5.75e-164 451
Msa1376070 MtrunA17_Chr1g0184281 59.649 228 59 10 1 218 1 205 3.82e-79 236
Msa1376070 MtrunA17_Chr7g0261031 70.796 113 33 0 9 121 3 115 4.74e-55 175
Msa1376070 MtrunA17_Chr1g0184271 71.429 105 30 0 14 118 12 116 1.94e-52 169
Msa1376070 MtrunA17_Chr8g0351721 67.857 112 36 0 5 116 9 120 8.65e-51 164
Msa1376070 MtrunA17_Chr8g0351701 69.903 103 31 0 14 116 23 125 7.49e-50 162
Msa1376070 MtrunA17_Chr6g0460951 67.961 103 33 0 13 115 39 141 8.86e-47 154
Msa1376070 MtrunA17_Chr5g0435641 64.000 100 36 0 9 108 2 101 1.45e-45 150
Msa1376070 MtrunA17_Chr7g0245871 66.667 102 34 0 14 115 27 128 4.62e-45 150
Msa1376070 MtrunA17_Chr2g0311601 57.143 112 47 1 6 117 5 115 2.45e-43 143
Msa1376070 MtrunA17_Chr4g0043421 47.500 160 74 5 1 159 1 151 3.96e-41 138
Msa1376070 MtrunA17_Chr7g0227511 60.000 115 42 2 1 115 1 111 1.53e-40 136
Msa1376070 MtrunA17_Chr7g0245861 68.367 98 29 2 6 101 4 101 4.24e-40 134
Msa1376070 MtrunA17_Chr5g0437571 56.604 106 45 1 10 115 2 106 1.04e-38 131
Msa1376070 MtrunA17_Chr3g0117121 57.273 110 46 1 6 115 2 110 2.09e-38 131
Msa1376070 MtrunA17_Chr3g0114061 51.613 124 58 2 11 133 5 127 4.98e-38 129
Msa1376070 MtrunA17_Chr4g0058651 63.542 96 34 1 13 108 10 104 1.11e-37 129
Msa1376070 MtrunA17_Chr3g0106101 56.075 107 45 2 10 115 2 107 1.50e-37 129
Msa1376070 MtrunA17_Chr6g0449641 56.881 109 46 1 7 115 2 109 1.99e-37 127
Msa1376070 MtrunA17_Chr5g0438091 53.333 105 48 1 11 115 36 139 1.92e-36 126
Msa1376070 MtrunA17_Chr5g0402611 55.357 112 49 1 8 119 2 112 4.54e-36 129
Msa1376070 MtrunA17_Chr5g0437401 51.327 113 54 1 5 117 2 113 7.79e-36 124
Msa1376070 MtrunA17_Chr6g0449651 57.426 101 42 1 8 108 61 160 1.44e-34 122
Msa1376070 MtrunA17_Chr3g0097221 54.630 108 48 1 9 116 2 108 2.12e-34 124
Msa1376070 MtrunA17_Chr3g0129071 53.333 105 48 1 11 115 44 147 4.52e-34 121
Msa1376070 MtrunA17_Chr3g0113891 50.000 112 55 1 1 112 1 111 6.15e-34 120
Msa1376070 MtrunA17_Chr5g0432451 56.250 112 48 1 4 115 33 143 7.37e-34 120
Msa1376070 MtrunA17_Chr3g0115431 55.046 109 48 1 8 116 3 110 1.52e-33 120
Msa1376070 MtrunA17_Chr4g0030001 50.000 114 55 2 3 115 13 125 1.91e-33 119
Msa1376070 MtrunA17_Chr8g0353981 56.897 116 42 2 1 116 1 108 4.86e-33 119
Msa1376070 MtrunA17_Chr6g0460941 63.636 88 32 0 14 101 7 94 1.12e-32 114
Msa1376070 MtrunA17_Chr7g0225111 43.363 113 63 1 13 125 4 115 3.78e-30 108
Msa1376070 MtrunA17_Chr5g0444351 42.742 124 69 2 15 137 6 128 1.21e-29 107
Msa1376070 MtrunA17_Chr1g0200201 50.495 101 49 1 15 115 73 172 2.29e-29 109
Msa1376070 MtrunA17_Chr4g0059901 41.509 106 61 1 10 115 6 110 1.55e-23 95.1
Msa1376070 MtrunA17_Chr8g0374601 43.689 103 57 1 14 116 26 127 2.73e-23 94.7
Msa1376070 MtrunA17_Chr8g0374591 41.748 103 59 1 14 116 8 109 1.32e-21 86.3
Msa1376070 MtrunA17_Chr8g0342351 40.566 106 62 1 11 116 9 113 9.06e-21 87.4
Msa1376070 MtrunA17_Chr2g0330201 37.383 107 66 1 10 116 15 120 8.40e-20 85.5
Msa1376070 MtrunA17_Chr6g0452671 32.824 131 87 1 11 141 8 137 2.15e-19 82.4
Msa1376070 MtrunA17_Chr6g0452691 30.645 186 117 6 15 199 10 184 1.31e-18 80.1
Msa1376070 MtrunA17_Chr6g0452661 35.780 109 68 2 15 122 10 117 1.61e-17 78.6
Msa1376070 MtrunA17_Chr8g0374581 39.806 103 60 2 14 115 8 109 3.36e-17 77.4
Msa1376070 MtrunA17_Chr4g0040831 34.188 117 66 2 8 114 9 124 2.30e-16 74.3
Msa1376070 MtrunA17_Chr4g0055441 35.780 109 68 2 15 122 3 110 5.78e-16 72.4
Msa1376070 MtrunA17_Chr2g0326041 56.250 48 20 1 13 60 32 78 1.77e-13 63.9
Msa1376070 MtrunA17_Chr5g0439111 33.654 104 67 2 15 117 10 112 4.88e-13 65.9
Msa1376070 MtrunA17_Chr2g0326051 50.000 54 27 0 62 115 7 60 3.46e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376070 AT2G42430.1 55.422 249 76 9 1 218 1 245 1.67e-79 238
Msa1376070 AT3G58190.1 62.205 127 40 1 14 132 11 137 1.69e-53 171
Msa1376070 AT3G03760.1 76.699 103 24 0 13 115 50 152 1.13e-51 168
Msa1376070 AT4G00210.1 66.964 112 37 0 5 116 2 113 2.08e-51 166
Msa1376070 AT2G45420.1 76.000 100 24 0 17 116 40 139 1.91e-50 165
Msa1376070 AT2G42440.1 61.600 125 40 1 9 125 2 126 2.01e-50 164
Msa1376070 AT2G31310.1 61.404 114 44 0 10 123 3 116 3.30e-50 162
Msa1376070 AT5G06080.1 60.331 121 47 1 12 132 5 124 1.61e-47 154
Msa1376070 AT4G00220.1 69.000 100 31 0 17 116 20 119 1.34e-45 151
Msa1376070 AT2G45410.1 68.000 100 32 0 17 116 19 118 8.40e-45 148
Msa1376070 AT5G63090.4 58.120 117 45 2 1 117 1 113 3.72e-39 133
Msa1376070 AT5G63090.3 58.120 117 45 2 1 117 1 113 3.72e-39 133
Msa1376070 AT5G63090.2 58.120 117 45 2 1 117 1 113 3.72e-39 133
Msa1376070 AT5G63090.1 58.120 117 45 2 1 117 1 113 3.72e-39 133
Msa1376070 AT3G27650.1 56.481 108 46 1 8 115 33 139 3.75e-38 130
Msa1376070 AT2G30130.1 57.009 107 44 2 10 115 3 108 8.40e-37 127
Msa1376070 AT1G31320.1 58.696 92 37 1 10 101 9 99 4.63e-36 125
Msa1376070 AT2G30340.1 46.970 132 68 2 1 131 39 169 5.94e-36 127
Msa1376070 AT2G30340.2 46.970 132 68 2 1 131 40 170 7.45e-36 127
Msa1376070 AT1G07900.1 53.398 103 47 1 13 115 32 133 1.58e-34 122
Msa1376070 AT5G66870.1 39.884 173 88 4 9 180 2 159 8.15e-34 123
Msa1376070 AT2G28500.1 53.398 103 47 1 13 115 54 155 1.05e-33 121
Msa1376070 AT3G11090.1 46.457 127 66 2 6 131 3 128 1.77e-33 118
Msa1376070 AT1G65620.1 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1376070 AT1G65620.4 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1376070 AT1G65620.3 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1376070 AT1G65620.5 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1376070 AT1G65620.2 59.091 110 44 1 7 116 2 110 9.52e-33 117
Msa1376070 AT1G16530.1 51.852 108 50 2 11 117 11 117 1.02e-32 116
Msa1376070 AT2G23660.2 50.485 103 50 1 13 115 4 105 2.03e-31 117
Msa1376070 AT2G23660.3 50.485 103 50 1 13 115 4 105 2.03e-31 117
Msa1376070 AT2G23660.1 50.485 103 50 1 13 115 4 105 2.03e-31 117
Msa1376070 AT2G40470.2 56.190 105 45 1 11 115 17 120 3.56e-30 110
Msa1376070 AT2G40470.1 56.190 105 45 1 11 115 42 145 5.45e-30 111
Msa1376070 AT3G26660.1 44.118 102 56 1 15 116 6 106 5.44e-29 105
Msa1376070 AT3G26620.1 44.118 102 56 1 15 116 6 106 8.74e-29 105
Msa1376070 AT3G50510.1 46.667 105 55 1 12 116 10 113 1.44e-24 96.3
Msa1376070 AT3G50510.2 46.667 105 55 1 12 116 10 113 1.44e-24 96.3
Msa1376070 AT3G47870.1 38.679 106 64 1 10 115 32 136 1.71e-20 88.2
Msa1376070 AT3G13850.1 42.157 102 58 1 15 116 37 137 2.67e-20 86.7
Msa1376070 AT5G35900.1 38.532 109 66 1 15 123 6 113 4.21e-18 79.7
Msa1376070 AT1G72980.1 37.037 108 67 1 8 115 7 113 2.09e-17 77.8
Msa1376070 AT1G06280.1 41.772 79 37 2 15 89 25 98 3.15e-14 69.3
Msa1376070 AT4G22700.1 42.529 87 45 3 15 100 6 88 1.97e-12 63.9

Find 31 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGTAAGTTGGACAAAA+TGG 0.286192 tig0019784:+10247 None:intergenic
AGTGAACTTTGAGGAGATAT+AGG 0.327596 tig0019784:+10223 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.329259 tig0019784:+11084 None:intergenic
ATCAATATGGCTTCTTCAAA+TGG 0.350219 tig0019784:-11210 None:intergenic
GCAGCTATTCATAAAGTGTT+TGG 0.364830 tig0019784:-11072 Msa1376070:CDS
TGTTGTCACAATTGCTTATG+AGG 0.389067 tig0019784:-10992 Msa1376070:CDS
CGTATTAGAGACCCTGTATA+TGG 0.390387 tig0019784:-10961 Msa1376070:CDS
GTGAACTTTGAGGAGATATA+GGG 0.398352 tig0019784:+10224 None:intergenic
TATGCAGGTAGCATGCTTGC+AGG 0.403290 tig0019784:-10374 Msa1376070:intron
GGAAACAATAATAATGTTGC+TGG 0.425208 tig0019784:-10289 Msa1376070:CDS
GATATAGGGTTCATGTAAGT+TGG 0.426071 tig0019784:+10238 None:intergenic
GATGACTCAAGTGAACTTTG+AGG 0.443078 tig0019784:+10214 None:intergenic
TGAGAGACACAGCCATATAC+AGG 0.444019 tig0019784:+10949 None:intergenic
TCTTCAAATGGAACTAGCTC+TGG 0.444575 tig0019784:-11198 Msa1376070:CDS
TCTTATAATTATTACAACCT+TGG 0.449925 tig0019784:+10113 None:intergenic
CAATAATAATGATCATGACT+TGG 0.461238 tig0019784:-10074 Msa1376070:CDS
GAGAATAATAATCAATGGAC+AGG 0.471919 tig0019784:-10310 Msa1376070:CDS
ATTGTGTACCTGTTGTTGTA+AGG 0.501180 tig0019784:+10918 None:intergenic
CATAGCAGCAGCATGAATGA+TGG 0.514545 tig0019784:-10184 Msa1376070:CDS
ACATAGAGAATAATAATCAA+TGG 0.518649 tig0019784:-10315 Msa1376070:CDS
CCTTGTTCTGAGCAAAAGTA+AGG 0.518854 tig0019784:+11108 None:intergenic
AATGGAACTAGCTCTGGAAC+TGG 0.534733 tig0019784:-11192 Msa1376070:CDS
AGAGAAGATTTCTCATTCCA+AGG 0.536983 tig0019784:-10130 Msa1376070:CDS
AATAATAATGATCATGACTT+GGG 0.555968 tig0019784:-10073 Msa1376070:CDS
GCTTCACAACGTTCATGAGC+TGG 0.566405 tig0019784:+11015 None:intergenic
TCTGGAACTGGTTCTCCTTG+TGG 0.567515 tig0019784:-11180 Msa1376070:CDS
AAATAGCACTTAGGATGATG+AGG 0.594424 tig0019784:-10039 Msa1376070:CDS
GAATAGCTGCAAATCTTGCA+GGG 0.610026 tig0019784:+11085 None:intergenic
AGGAACTTGCATGCTCCACA+AGG 0.611585 tig0019784:+11165 None:intergenic
AATTGCAAGAAATAGCACTT+AGG 0.616097 tig0019784:-10048 Msa1376070:CDS
GAGAGACACAGCCATATACA+GGG 0.671769 tig0019784:+10950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTAAAAAAATAAA+GGG + tig0019784:10627-10646 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG + tig0019784:10628-10647 None:intergenic 0.0%
!! ATATATATTAAAAAAATAAA+GGG + tig0019784:10627-10646 None:intergenic 0.0%
!! AATATATATTAAAAAAATAA+AGG + tig0019784:10628-10647 None:intergenic 0.0%
!! AATTATATAAACTTCACATT+TGG - tig0019784:10348-10367 Msa1376070:CDS 15.0%
!! AATAAATAATATTCTTTGAC+TGG + tig0019784:10729-10748 None:intergenic 15.0%
!! AATTATATAAACTTCACATT+TGG - tig0019784:10348-10367 Msa1376070:CDS 15.0%
!! AATAAATAATATTCTTTGAC+TGG + tig0019784:10729-10748 None:intergenic 15.0%
!!! AGTTTTCTTTTTAAATATGC+AGG - tig0019784:10848-10867 Msa1376070:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG - tig0019784:10922-10941 Msa1376070:intron 20.0%
!! TCTTATAATTATTACAACCT+TGG + tig0019784:11127-11146 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG - tig0019784:11164-11183 Msa1376070:CDS 20.0%
!!! AGTTTTCTTTTTAAATATGC+AGG - tig0019784:10848-10867 Msa1376070:intron 20.0%
!! ACATAGAGAATAATAATCAA+TGG - tig0019784:10922-10941 Msa1376070:intron 20.0%
!! TCTTATAATTATTACAACCT+TGG + tig0019784:11127-11146 None:intergenic 20.0%
!! AATAATAATGATCATGACTT+GGG - tig0019784:11164-11183 Msa1376070:CDS 20.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG - tig0019784:10462-10481 Msa1376070:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG + tig0019784:10573-10592 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG + tig0019784:10576-10595 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG - tig0019784:10812-10831 Msa1376070:intron 25.0%
! AGTACCAATAGAATTCATTA+AGG + tig0019784:10819-10838 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG - tig0019784:11163-11182 Msa1376070:CDS 25.0%
!!! TTCTAATTAAAGGTGTTGTT+AGG - tig0019784:10462-10481 Msa1376070:intron 25.0%
!!! AGTTCTAAAAAAAACTTTGG+TGG + tig0019784:10573-10592 None:intergenic 25.0%
!!! GCAAGTTCTAAAAAAAACTT+TGG + tig0019784:10576-10595 None:intergenic 25.0%
! ATCACCTTAATGAATTCTAT+TGG - tig0019784:10812-10831 Msa1376070:intron 25.0%
! AGTACCAATAGAATTCATTA+AGG + tig0019784:10819-10838 None:intergenic 25.0%
! CAATAATAATGATCATGACT+TGG - tig0019784:11163-11182 Msa1376070:CDS 25.0%
GCACTAACACTTCTAATTAA+AGG - tig0019784:10452-10471 Msa1376070:intron 30.0%
GAGAATAATAATCAATGGAC+AGG - tig0019784:10927-10946 Msa1376070:CDS 30.0%
GGAAACAATAATAATGTTGC+TGG - tig0019784:10948-10967 Msa1376070:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG + tig0019784:10993-11012 None:intergenic 30.0%
AATTGCAAGAAATAGCACTT+AGG - tig0019784:11189-11208 Msa1376070:CDS 30.0%
GCACTAACACTTCTAATTAA+AGG - tig0019784:10452-10471 Msa1376070:intron 30.0%
GAGAATAATAATCAATGGAC+AGG - tig0019784:10927-10946 Msa1376070:CDS 30.0%
GGAAACAATAATAATGTTGC+TGG - tig0019784:10948-10967 Msa1376070:CDS 30.0%
! TTCATGTAAGTTGGACAAAA+TGG + tig0019784:10993-11012 None:intergenic 30.0%
AATTGCAAGAAATAGCACTT+AGG - tig0019784:11189-11208 Msa1376070:CDS 30.0%
TAAGGTGCAAAAATGCAATC+AGG + tig0019784:10114-10133 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG - tig0019784:10165-10184 Msa1376070:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG - tig0019784:10245-10264 Msa1376070:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG - tig0019784:10311-10330 Msa1376070:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG + tig0019784:10322-10341 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG + tig0019784:10511-10530 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG - tig0019784:10684-10703 Msa1376070:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG + tig0019784:10692-10711 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG + tig0019784:11002-11021 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG + tig0019784:11016-11035 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG + tig0019784:11017-11036 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG - tig0019784:11107-11126 Msa1376070:CDS 35.0%
AAATAGCACTTAGGATGATG+AGG - tig0019784:11198-11217 Msa1376070:CDS 35.0%
TAAGGTGCAAAAATGCAATC+AGG + tig0019784:10114-10133 None:intergenic 35.0%
! GCAGCTATTCATAAAGTGTT+TGG - tig0019784:10165-10184 Msa1376070:CDS 35.0%
TGTTGTCACAATTGCTTATG+AGG - tig0019784:10245-10264 Msa1376070:CDS 35.0%
! CATTTTTGCCTTACAACAAC+AGG - tig0019784:10311-10330 Msa1376070:CDS 35.0%
ATTGTGTACCTGTTGTTGTA+AGG + tig0019784:10322-10341 None:intergenic 35.0%
ATGTGATCAATCACATGTGT+AGG + tig0019784:10511-10530 None:intergenic 35.0%
! CTACTCCTGTCTTTTTCTTA+AGG - tig0019784:10684-10703 Msa1376070:intron 35.0%
AAGAGCCTTAAGAAAAAGAC+AGG + tig0019784:10692-10711 None:intergenic 35.0%
GATATAGGGTTCATGTAAGT+TGG + tig0019784:11002-11021 None:intergenic 35.0%
! GTGAACTTTGAGGAGATATA+GGG + tig0019784:11016-11035 None:intergenic 35.0%
! AGTGAACTTTGAGGAGATAT+AGG + tig0019784:11017-11036 None:intergenic 35.0%
AGAGAAGATTTCTCATTCCA+AGG - tig0019784:11107-11126 Msa1376070:CDS 35.0%
AAATAGCACTTAGGATGATG+AGG - tig0019784:11198-11217 Msa1376070:CDS 35.0%
TCTTCAAATGGAACTAGCTC+TGG - tig0019784:10039-10058 Msa1376070:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG + tig0019784:10095-10114 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG + tig0019784:10132-10151 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG - tig0019784:10129-10148 Msa1376070:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG + tig0019784:10155-10174 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG + tig0019784:10156-10175 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG - tig0019784:10276-10295 Msa1376070:CDS 40.0%
ACTACACTTACTCACGTATC+TGG - tig0019784:10430-10449 Msa1376070:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG + tig0019784:10682-10701 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG - tig0019784:10702-10721 Msa1376070:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG - tig0019784:10703-10722 Msa1376070:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG + tig0019784:11026-11045 None:intergenic 40.0%
TCTTCAAATGGAACTAGCTC+TGG - tig0019784:10039-10058 Msa1376070:CDS 40.0%
! CAGGTGCACATTTTCTTCTA+AGG + tig0019784:10095-10114 None:intergenic 40.0%
! CCTTGTTCTGAGCAAAAGTA+AGG + tig0019784:10132-10151 None:intergenic 40.0%
!! CCTTACTTTTGCTCAGAACA+AGG - tig0019784:10129-10148 Msa1376070:CDS 40.0%
GAATAGCTGCAAATCTTGCA+GGG + tig0019784:10155-10174 None:intergenic 40.0%
TGAATAGCTGCAAATCTTGC+AGG + tig0019784:10156-10175 None:intergenic 40.0%
CGTATTAGAGACCCTGTATA+TGG - tig0019784:10276-10295 Msa1376070:CDS 40.0%
ACTACACTTACTCACGTATC+TGG - tig0019784:10430-10449 Msa1376070:intron 40.0%
AGAAAAAGACAGGAGTAGTG+TGG + tig0019784:10682-10701 None:intergenic 40.0%
TAAGGCTCTTTGATGCTTCA+AGG - tig0019784:10702-10721 Msa1376070:intron 40.0%
AAGGCTCTTTGATGCTTCAA+GGG - tig0019784:10703-10722 Msa1376070:intron 40.0%
GATGACTCAAGTGAACTTTG+AGG + tig0019784:11026-11045 None:intergenic 40.0%
!! AATGGAACTAGCTCTGGAAC+TGG - tig0019784:10045-10064 Msa1376070:CDS 45.0%
GAGAGACACAGCCATATACA+GGG + tig0019784:10290-10309 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG + tig0019784:10291-10310 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG - tig0019784:11053-11072 Msa1376070:CDS 45.0%
!! AATGGAACTAGCTCTGGAAC+TGG - tig0019784:10045-10064 Msa1376070:CDS 45.0%
GAGAGACACAGCCATATACA+GGG + tig0019784:10290-10309 None:intergenic 45.0%
TGAGAGACACAGCCATATAC+AGG + tig0019784:10291-10310 None:intergenic 45.0%
CATAGCAGCAGCATGAATGA+TGG - tig0019784:11053-11072 Msa1376070:CDS 45.0%
!! TATATATTAAAAAAATAAAG+GGG + tig0019784:10626-10645 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG - tig0019784:10635-10654 Msa1376070:intron 5.0%
!! TATATATTAAAAAAATAAAG+GGG + tig0019784:10626-10645 None:intergenic 5.0%
!! TTTAATATATATTAGAAATT+TGG - tig0019784:10635-10654 Msa1376070:intron 5.0%
! TCTGGAACTGGTTCTCCTTG+TGG - tig0019784:10057-10076 Msa1376070:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG + tig0019784:10075-10094 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG + tig0019784:10225-10244 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG - tig0019784:10863-10882 Msa1376070:intron 50.0%
! TCTGGAACTGGTTCTCCTTG+TGG - tig0019784:10057-10076 Msa1376070:CDS 50.0%
AGGAACTTGCATGCTCCACA+AGG + tig0019784:10075-10094 None:intergenic 50.0%
GCTTCACAACGTTCATGAGC+TGG + tig0019784:10225-10244 None:intergenic 50.0%
TATGCAGGTAGCATGCTTGC+AGG - tig0019784:10863-10882 Msa1376070:intron 50.0%
GTTAGGTGTTCGACACGTGC+AGG - tig0019784:10479-10498 Msa1376070:intron 55.0%
GTTAGGTGTTCGACACGTGC+AGG - tig0019784:10479-10498 Msa1376070:intron 55.0%
AGGTGTTCGACACGTGCAGG+CGG - tig0019784:10482-10501 Msa1376070:intron 60.0%
AGGTGTTCGACACGTGCAGG+CGG - tig0019784:10482-10501 Msa1376070:intron 60.0%
Chromosome Type Strat End Strand Name
tig0019784 gene 10033 11226 10033 ID=Msa1376070;Name=Msa1376070
tig0019784 mRNA 10033 11226 10033 ID=Msa1376070-mRNA-1;Parent=Msa1376070;Name=Msa1376070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|218
tig0019784 exon 10927 11226 10927 ID=Msa1376070-mRNA-1:exon:4953;Parent=Msa1376070-mRNA-1
tig0019784 exon 10033 10389 10033 ID=Msa1376070-mRNA-1:exon:4952;Parent=Msa1376070-mRNA-1
tig0019784 CDS 10927 11226 10927 ID=Msa1376070-mRNA-1:cds;Parent=Msa1376070-mRNA-1
tig0019784 CDS 10033 10389 10033 ID=Msa1376070-mRNA-1:cds;Parent=Msa1376070-mRNA-1
Gene Sequence

>Msa1376070

ATGGCTTCTTCAAATGGAACTAGCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAGTTCCTTAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAATGTTTCTAAGTTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTATATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAATTGATGCAAGTGAAATCTCAACTGTCACATAACATAGAGAATAATAATCAATGGACAGGAAACAATAATAATGTTGCTGGCACACAAGCAATGAATTATCCATTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGTTCACTTGAGTCATCAATTGATCATAGCAGCAGCATGAATGATGGAATGATGAGCATGCAAGATGTACAAAGTAGCAGAGAAGATTTCTCATTCCAAGGTTGTAATAATTATAAGAAAAGAATGTCACATAACAATAATAATGATCATGACTTGGGTGAATTGCAAGAAATAGCACTTAGGATGATGAGGAACTAA

Protein sequence

>Msa1376070

MASSNGTSSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKSQLSHNIENNNQWTGNNNNVAGTQAMNYPFCPTYMNPISPQSSLESSIDHSSSMNDGMMSMQDVQSSREDFSFQGCNNYKKRMSHNNNNDHDLGELQEIALRMMRN*