Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532760 | KAF1896842.1 | 100.000 | 164 | 0 | 0 | 1 | 164 | 39 | 202 | 2.77e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532760 | sp|P0DH94|VATL5_ARATH | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.24e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532760 | A0A6A5PIM8 | 100.000 | 164 | 0 | 0 | 1 | 164 | 39 | 202 | 1.32e-108 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055740 | Msa0532760 | -0.817193 | 3.744032e-52 | -8.615850e-47 |
| Msa0091210 | Msa0532760 | 0.819621 | 1.055183e-52 | -8.615850e-47 |
| Msa0532760 | Msa0537720 | -0.811563 | 6.576630e-51 | -8.615850e-47 |
| Msa0532760 | Msa0606390 | 0.859208 | 4.849190e-63 | -8.615850e-47 |
| Msa0532760 | Msa0886330 | 0.819681 | 1.022176e-52 | -8.615850e-47 |
| Msa0532760 | Msa1144720 | 0.804124 | 2.510913e-49 | -8.615850e-47 |
| Msa0532760 | Msa1287370 | 0.825043 | 5.813728e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532760 | MtrunA17_Chr4g0036041 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 2.70e-112 | 315 |
| Msa0532760 | MtrunA17_Chr8g0372131 | 100.000 | 164 | 0 | 0 | 1 | 164 | 1 | 164 | 2.70e-112 | 315 |
| Msa0532760 | MtrunA17_Chr5g0405201 | 98.171 | 164 | 3 | 0 | 1 | 164 | 1 | 164 | 3.81e-110 | 310 |
| Msa0532760 | MtrunA17_Chr7g0256611 | 36.129 | 155 | 93 | 3 | 10 | 158 | 111 | 265 | 2.04e-22 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532760 | AT4G34720.1 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.26e-110 | 311 |
| Msa0532760 | AT4G38920.1 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.26e-110 | 311 |
| Msa0532760 | AT2G16510.1 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 1.26e-110 | 311 |
| Msa0532760 | AT1G19910.1 | 98.773 | 163 | 2 | 0 | 2 | 164 | 3 | 165 | 7.82e-110 | 310 |
| Msa0532760 | AT1G75630.1 | 100.000 | 161 | 0 | 0 | 4 | 164 | 6 | 166 | 8.18e-110 | 310 |
| Msa0532760 | AT1G75630.2 | 82.564 | 195 | 0 | 1 | 4 | 164 | 6 | 200 | 1.06e-102 | 293 |
| Msa0532760 | AT4G38920.2 | 100.000 | 138 | 0 | 0 | 27 | 164 | 1 | 138 | 1.26e-91 | 263 |
| Msa0532760 | AT4G34720.2 | 100.000 | 138 | 0 | 0 | 27 | 164 | 5 | 142 | 1.46e-91 | 263 |
| Msa0532760 | AT1G19910.2 | 98.333 | 120 | 2 | 0 | 2 | 121 | 3 | 122 | 3.87e-78 | 228 |
| Msa0532760 | AT2G25610.1 | 35.484 | 155 | 94 | 3 | 10 | 158 | 19 | 173 | 2.11e-22 | 88.6 |
| Msa0532760 | AT4G32530.1 | 35.032 | 157 | 96 | 3 | 8 | 158 | 19 | 175 | 2.49e-22 | 88.6 |
| Msa0532760 | AT2G25610.2 | 35.484 | 155 | 94 | 3 | 10 | 158 | 68 | 222 | 2.54e-22 | 89.4 |
| Msa0532760 | AT4G32530.2 | 29.412 | 187 | 96 | 4 | 8 | 158 | 19 | 205 | 5.17e-16 | 72.4 |
Find 72 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGTTATGGCTGGTGTTT+TGG | 0.212764 | 4_1:-7307548 | Msa0532760:CDS |
| GACACATTTCATAAGGTAAA+AGG | 0.215527 | 4_1:+7305760 | None:intergenic |
| GCTGAAGCTCTTGCCCTTTA+CGG | 0.242588 | 4_1:-7306045 | Msa0532760:CDS |
| CTTTCTGCTGGTATGGCTAT+TGG | 0.251819 | 4_1:-7307403 | Msa0532760:CDS |
| GATGAAACTGCACCCTTCTT+TGG | 0.254630 | 4_1:-7308016 | Msa0532760:CDS |
| GGTCTTGCTTGTGGTCTTGC+CGG | 0.261576 | 4_1:-7307427 | Msa0532760:CDS |
| GCACCCTTCTTTGGCTTCCT+TGG | 0.282736 | 4_1:-7308007 | Msa0532760:CDS |
| ATCATTCCAACGAAAAGTTT+TGG | 0.295044 | 4_1:+7306084 | None:intergenic |
| CAAAGTAAGCTCAAATAATA+TGG | 0.325870 | 4_1:+7305734 | None:intergenic |
| ATTCGCAACTAAATCATTAC+AGG | 0.346399 | 4_1:+7305687 | None:intergenic |
| AGGTAATAAGATTTGGCCTT+TGG | 0.348886 | 4_1:+7307478 | None:intergenic |
| GCCCTTTACGGTCTTATTGT+TGG | 0.370662 | 4_1:-7306033 | Msa0532760:CDS |
| ACCAACAATAAGACCGTAAA+GGG | 0.386486 | 4_1:+7306032 | None:intergenic |
| ATTGCTGTTATTATCAGTAC+TGG | 0.402048 | 4_1:-7307508 | Msa0532760:CDS |
| AATAGACTTCATCACGAGTT+CGG | 0.407292 | 4_1:+7307576 | None:intergenic |
| TTGTTGGTGATGCTGGTGTT+AGG | 0.408515 | 4_1:-7307378 | Msa0532760:intron |
| GTCTATTGTACCCGTTGTTA+TGG | 0.408680 | 4_1:-7307560 | Msa0532760:CDS |
| TAGCTCCACCTGTCATTTGA+TGG | 0.411425 | 4_1:-7305834 | Msa0532760:three_prime_UTR |
| ATTGGAATTGTTGGTGATGC+TGG | 0.414887 | 4_1:-7307385 | Msa0532760:CDS |
| GTTGTGCGGTTAGTGATGTT+TGG | 0.418606 | 4_1:-7305895 | Msa0532760:three_prime_UTR |
| ATAGACTTCATCACGAGTTC+GGG | 0.420978 | 4_1:+7307577 | None:intergenic |
| GTCTTGCTTGTGGTCTTGCC+GGG | 0.426237 | 4_1:-7307426 | Msa0532760:CDS |
| GCAGTTTCATCGCCGCTGAA+TGG | 0.444149 | 4_1:+7308028 | None:intergenic |
| TATTTGTAAAATACTGCAAC+TGG | 0.446806 | 4_1:+7305869 | None:intergenic |
| TGCCGGGCTTTCTGCTGGTA+TGG | 0.448874 | 4_1:-7307410 | Msa0532760:CDS |
| AGTCTAGAGCCGAGTAAGTA+AGG | 0.456892 | 4_1:-7305984 | Msa0532760:exon |
| GGTATGGCTATTGGAATTGT+TGG | 0.458567 | 4_1:-7307394 | Msa0532760:CDS |
| GATGTGCATATCCATCAAAA+AGG | 0.459551 | 4_1:+7307458 | None:intergenic |
| GGTTAGTGAACGTGGATGAT+TGG | 0.460078 | 4_1:+7308164 | None:intergenic |
| CCCTCACCTTCTTAATAAGA+AGG | 0.460587 | 4_1:+7305929 | None:intergenic |
| TGGTGTTGGTGTGGCTTCGA+TGG | 0.461273 | 4_1:-7307611 | Msa0532760:CDS |
| CACCAACCTTCTTATTAAGA+AGG | 0.461603 | 4_1:-7305935 | Msa0532760:three_prime_UTR |
| CTTCAGCAAAGATGAGGATA+AGG | 0.463411 | 4_1:+7306061 | None:intergenic |
| GGTCTTGCCGGGCTTTCTGC+TGG | 0.464436 | 4_1:-7307415 | Msa0532760:CDS |
| CTTTCGTCTGGTCTTGCTTG+TGG | 0.465084 | 4_1:-7307436 | Msa0532760:CDS |
| ATTATCTTGTCTTCACGTGC+TGG | 0.465707 | 4_1:-7306009 | Msa0532760:CDS |
| TTACTTACTCGGCTCTAGAC+TGG | 0.484955 | 4_1:+7305986 | None:intergenic |
| GGATATGCACATCTTTCGTC+TGG | 0.487366 | 4_1:-7307448 | Msa0532760:CDS |
| ATTGTACCCGTTGTTATGGC+TGG | 0.491715 | 4_1:-7307556 | Msa0532760:CDS |
| ACACATTTCATAAGGTAAAA+GGG | 0.493376 | 4_1:+7305761 | None:intergenic |
| CGAGAGCAGCTGCGGCTCCA+AGG | 0.495410 | 4_1:+7307990 | None:intergenic |
| AACACAGCTCCTTACTTACT+CGG | 0.497367 | 4_1:+7305975 | None:intergenic |
| AAAACACCAGCCATAACAAC+GGG | 0.500989 | 4_1:+7307550 | None:intergenic |
| CGACGTCGTTGCAGTATCAA+TGG | 0.505821 | 4_1:-7308053 | Msa0532760:exon |
| AGCCATACCAGCAGAAAGCC+CGG | 0.512314 | 4_1:+7307408 | None:intergenic |
| CACCTTCTTAATAAGAAGGT+TGG | 0.517354 | 4_1:+7305933 | None:intergenic |
| TCTCTGTTGTGTTGTGGTAA+AGG | 0.518143 | 4_1:+7308130 | None:intergenic |
| ATGGCATGACACATTTCATA+AGG | 0.518430 | 4_1:+7305753 | None:intergenic |
| CTTCTTAATAAGAAGGTTGG+TGG | 0.527041 | 4_1:+7305936 | None:intergenic |
| ATTAGATTCAGCTATAACGT+TGG | 0.528856 | 4_1:-7305632 | Msa0532760:three_prime_UTR |
| GGCTCCAAGGAAGCCAAAGA+AGG | 0.530335 | 4_1:+7308003 | None:intergenic |
| GGTGTTGGTGTGGCTTCGAT+GGG | 0.543393 | 4_1:-7307610 | Msa0532760:CDS |
| GAAGGTATGGGAGCTGCATA+CGG | 0.543753 | 4_1:-7307646 | Msa0532760:intron |
| TACCAACAATAAGACCGTAA+AGG | 0.543826 | 4_1:+7306031 | None:intergenic |
| TACAAACACCATCAAATGAC+AGG | 0.554764 | 4_1:+7305826 | None:intergenic |
| ACCTTCTTATTAAGAAGGTG+AGG | 0.559555 | 4_1:-7305930 | Msa0532760:three_prime_UTR |
| ATGATGATGGTTAGTGAACG+TGG | 0.564196 | 4_1:+7308156 | None:intergenic |
| TTTCGATCTCTGTTGTGTTG+TGG | 0.571973 | 4_1:+7308124 | None:intergenic |
| CCTTCTTATTAAGAAGGTGA+GGG | 0.574431 | 4_1:-7305929 | Msa0532760:three_prime_UTR |
| GCTCCAAGGAAGCCAAAGAA+GGG | 0.585616 | 4_1:+7308004 | None:intergenic |
| GGAACAGCGAAGAGTGGTGT+TGG | 0.601402 | 4_1:-7307625 | Msa0532760:CDS |
| AGCGAAGAGTGGTGTTGGTG+TGG | 0.611591 | 4_1:-7307620 | Msa0532760:CDS |
| CTTCTTATTAAGAAGGTGAG+GGG | 0.629841 | 4_1:-7305928 | Msa0532760:three_prime_UTR |
| TGAGAAGACGAGAGCAGCTG+CGG | 0.632351 | 4_1:+7307982 | None:intergenic |
| CAAGAGCTTCAGCAAAGATG+AGG | 0.635794 | 4_1:+7306055 | None:intergenic |
| CAAAACACCAGCCATAACAA+CGG | 0.640096 | 4_1:+7307549 | None:intergenic |
| GTGGTAAAGGAAGATGATGA+TGG | 0.645545 | 4_1:+7308143 | None:intergenic |
| TTCTTATTAAGAAGGTGAGG+GGG | 0.649897 | 4_1:-7305927 | Msa0532760:three_prime_UTR |
| CAGTACTGGAATTAATCCAA+AGG | 0.650672 | 4_1:-7307494 | Msa0532760:CDS |
| GTATCAATGGCTCCATTCAG+CGG | 0.659340 | 4_1:-7308040 | Msa0532760:exon |
| AAACACCATCAAATGACAGG+TGG | 0.667417 | 4_1:+7305829 | None:intergenic |
| GCATACGGAACAGCGAAGAG+TGG | 0.668854 | 4_1:-7307631 | Msa0532760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATTCAAATTATTCAAA+CGG | + | chr4_1:7305957-7305976 | None:intergenic | 15.0% |
| !!! | AGATGTTTTTTTAAATAAGA+TGG | + | chr4_1:7305995-7306014 | None:intergenic | 15.0% |
| !!! | TTAAACTTGAAATTTGTTTT+CGG | - | chr4_1:7306458-7306477 | Msa0532760:intron | 15.0% |
| !!! | GTTGTTTTTATAAGATATAT+TGG | - | chr4_1:7306656-7306675 | Msa0532760:intron | 15.0% |
| !! | TATGAAAATAAGTTGTAAAA+AGG | - | chr4_1:7306685-7306704 | Msa0532760:intron | 15.0% |
| !!! | TTGTATTAGTAGTTTATTTT+TGG | - | chr4_1:7307970-7307989 | Msa0532760:intron | 15.0% |
| !! | GAAAAAAGAGAAATTGAAAA+GGG | + | chr4_1:7305852-7305871 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAGAAATTGAAA+AGG | + | chr4_1:7305853-7305872 | None:intergenic | 20.0% |
| !!! | CGAAATTGAAGATTTAAAAT+TGG | + | chr4_1:7305877-7305896 | None:intergenic | 20.0% |
| !! | AATTTGAATTTCAATCAACT+CGG | - | chr4_1:7305964-7305983 | Msa0532760:three_prime_UTR | 20.0% |
| !! | TTTCAATTGAATTGAATTGA+TGG | - | chr4_1:7306107-7306126 | Msa0532760:intron | 20.0% |
| !! | ATCAAAAAGGTAATAAGATT+TGG | + | chr4_1:7306310-7306329 | None:intergenic | 20.0% |
| !!! | AAATCTTATTACCTTTTTGA+TGG | - | chr4_1:7306309-7306328 | Msa0532760:intron | 20.0% |
| !!! | TAAACTTGAAATTTGTTTTC+GGG | - | chr4_1:7306459-7306478 | Msa0532760:intron | 20.0% |
| !!! | TCCTACTATATTTTTGAAAA+AGG | + | chr4_1:7307521-7307540 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAATATAGTAGGA+TGG | - | chr4_1:7307521-7307540 | Msa0532760:CDS | 20.0% |
| !! | TTCAAAGGAAGAAATTTATT+AGG | + | chr4_1:7307641-7307660 | None:intergenic | 20.0% |
| ! | TTCAAATTATTCAAACGGAT+CGG | + | chr4_1:7305952-7305971 | None:intergenic | 25.0% |
| ! | TTATTAGCAATTAGCGATTA+GGG | - | chr4_1:7306043-7306062 | Msa0532760:CDS | 25.0% |
| !! | AATTCTTTTGCCTTTCTAAT+TGG | - | chr4_1:7306426-7306445 | Msa0532760:intron | 25.0% |
| !!! | GATTTGTTTTTTGTCTGATT+TGG | - | chr4_1:7306483-7306502 | Msa0532760:intron | 25.0% |
| !!! | TAAGTTTTGTGAGATTGTTT+GGG | + | chr4_1:7306747-7306766 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTGAGATTGTT+TGG | + | chr4_1:7306748-7306767 | None:intergenic | 25.0% |
| !! | GACTTAGATATGCATTTTAT+CGG | - | chr4_1:7306807-7306826 | Msa0532760:intron | 25.0% |
| ! | TCAATGTTATACTGTTATTC+TGG | - | chr4_1:7306918-7306937 | Msa0532760:intron | 25.0% |
| ! | TGAAGTCGAATTAAATGAAA+TGG | - | chr4_1:7306996-7307015 | Msa0532760:intron | 25.0% |
| ! | GAAGTCGAATTAAATGAAAT+GGG | - | chr4_1:7306997-7307016 | Msa0532760:intron | 25.0% |
| !!! | ATATTTGGATTGGTAGTATA+GGG | + | chr4_1:7307072-7307091 | None:intergenic | 25.0% |
| !!! | TATATTTGGATTGGTAGTAT+AGG | + | chr4_1:7307073-7307092 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | + | chr4_1:7307320-7307339 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | + | chr4_1:7307324-7307343 | None:intergenic | 25.0% |
| ! | GAGGAACTAAAAAATTGTAT+TGG | + | chr4_1:7307327-7307346 | None:intergenic | 25.0% |
| !!! | TATATTTTTGAAAAAGGCCA+AGG | + | chr4_1:7307515-7307534 | None:intergenic | 25.0% |
| !!! | GCCTTTTTCAAAAATATAGT+AGG | - | chr4_1:7307517-7307536 | Msa0532760:CDS | 25.0% |
| ! | AGGAAGAAATTTATTAGGAA+TGG | + | chr4_1:7307636-7307655 | None:intergenic | 25.0% |
| ! | TATTTGTAAAATACTGCAAC+TGG | + | chr4_1:7307912-7307931 | None:intergenic | 25.0% |
| ! | ACACATTTCATAAGGTAAAA+GGG | + | chr4_1:7308020-7308039 | None:intergenic | 25.0% |
| ! | CAAAGTAAGCTCAAATAATA+TGG | + | chr4_1:7308047-7308066 | None:intergenic | 25.0% |
| AAGAGAAATTGAAAAGGGAT+CGG | + | chr4_1:7305847-7305866 | None:intergenic | 30.0% | |
| TCAAATTATTCAAACGGATC+GGG | + | chr4_1:7305951-7305970 | None:intergenic | 30.0% | |
| GTTATTAGCAATTAGCGATT+AGG | - | chr4_1:7306042-7306061 | Msa0532760:CDS | 30.0% | |
| CAATTGAATTGAATTGATGG+AGG | - | chr4_1:7306110-7306129 | Msa0532760:intron | 30.0% | |
| ! | ATTGCTGTTATTATCAGTAC+TGG | - | chr4_1:7306270-7306289 | Msa0532760:intron | 30.0% |
| ATCACACAAACCAATTAGAA+AGG | + | chr4_1:7306439-7306458 | None:intergenic | 30.0% | |
| TATCTAAGTCTCACACATTA+GGG | + | chr4_1:7306797-7306816 | None:intergenic | 30.0% | |
| ATATCTAAGTCTCACACATT+AGG | + | chr4_1:7306798-7306817 | None:intergenic | 30.0% | |
| ATCAATGTAAATAAGAACCG+AGG | + | chr4_1:7306846-7306865 | None:intergenic | 30.0% | |
| ! | CGGTTCTTATTTACATTGAT+TGG | - | chr4_1:7306846-7306865 | Msa0532760:intron | 30.0% |
| !! | ATTGATTGGCTGTTTTCTTT+GGG | - | chr4_1:7306860-7306879 | Msa0532760:intron | 30.0% |
| !! | GTTGGTGGTATAACAATATA+GGG | - | chr4_1:7306968-7306987 | Msa0532760:intron | 30.0% |
| ACCAATCCAAATATACCTTT+AGG | - | chr4_1:7307078-7307097 | Msa0532760:intron | 30.0% | |
| ! | ACAAAGCCTAAAGGTATATT+TGG | + | chr4_1:7307087-7307106 | None:intergenic | 30.0% |
| !! | ATATACCTTTAGGCTTTGTT+TGG | - | chr4_1:7307088-7307107 | Msa0532760:intron | 30.0% |
| !! | TATACCTTTAGGCTTTGTTT+GGG | - | chr4_1:7307089-7307108 | Msa0532760:intron | 30.0% |
| CTAAAAAATTGTATTGGAGG+AGG | + | chr4_1:7307321-7307340 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGTTCCTCCAAATG+AGG | - | chr4_1:7307333-7307352 | Msa0532760:intron | 30.0% |
| TGCAAGAAATAGAGGAAAAT+GGG | + | chr4_1:7307406-7307425 | None:intergenic | 30.0% | |
| TAAGTAAGTGCAAGAAATAG+AGG | + | chr4_1:7307414-7307433 | None:intergenic | 30.0% | |
| ! | ATCCTATTGATAACAATTGC+AGG | + | chr4_1:7307585-7307604 | None:intergenic | 30.0% |
| GCAATTGTTATCAATAGGAT+AGG | - | chr4_1:7307585-7307604 | Msa0532760:CDS | 30.0% | |
| TTATCAATAGGATAGGATAC+TGG | - | chr4_1:7307592-7307611 | Msa0532760:CDS | 30.0% | |
| TATCAATAGGATAGGATACT+GGG | - | chr4_1:7307593-7307612 | Msa0532760:CDS | 30.0% | |
| GCAAGAGAATAATTGTTCAA+AGG | + | chr4_1:7307656-7307675 | None:intergenic | 30.0% | |
| ! | ATCATTCCAACGAAAAGTTT+TGG | + | chr4_1:7307697-7307716 | None:intergenic | 30.0% |
| GACACATTTCATAAGGTAAA+AGG | + | chr4_1:7308021-7308040 | None:intergenic | 30.0% | |
| ATTCGCAACTAAATCATTAC+AGG | + | chr4_1:7308094-7308113 | None:intergenic | 30.0% | |
| ATTAGATTCAGCTATAACGT+TGG | - | chr4_1:7308146-7308165 | Msa0532760:five_prime_UTR | 30.0% | |
| AGAGAAATTGAAAAGGGATC+GGG | + | chr4_1:7305846-7305865 | None:intergenic | 35.0% | |
| TGAATTGAATTGATGGAGGA+AGG | - | chr4_1:7306114-7306133 | Msa0532760:intron | 35.0% | |
| AATAGACTTCATCACGAGTT+CGG | + | chr4_1:7306205-7306224 | None:intergenic | 35.0% | |
| ! | CAGTACTGGAATTAATCCAA+AGG | - | chr4_1:7306284-7306303 | Msa0532760:intron | 35.0% |
| ! | AGGTAATAAGATTTGGCCTT+TGG | + | chr4_1:7306303-7306322 | None:intergenic | 35.0% |
| GATGTGCATATCCATCAAAA+AGG | + | chr4_1:7306323-7306342 | None:intergenic | 35.0% | |
| GATAAGTTGTTTACCCAAAC+AGG | + | chr4_1:7306539-7306558 | None:intergenic | 35.0% | |
| ! | CATTTTATCGGTGAACTTGT+GGG | - | chr4_1:7306819-7306838 | Msa0532760:intron | 35.0% |
| !! | CATTGATTGGCTGTTTTCTT+TGG | - | chr4_1:7306859-7306878 | Msa0532760:intron | 35.0% |
| ! | CTGTTTTCTTTGGGTATGTT+TGG | - | chr4_1:7306869-7306888 | Msa0532760:intron | 35.0% |
| ! | ATACTGTTATTCTGGTTGAC+TGG | - | chr4_1:7306926-7306945 | Msa0532760:intron | 35.0% |
| !! | TTGACTGGTGTTTTTGTACA+TGG | - | chr4_1:7306941-7306960 | Msa0532760:intron | 35.0% |
| !! | TGGTGTTTTTGTACATGGTT+TGG | - | chr4_1:7306946-7306965 | Msa0532760:intron | 35.0% |
| !!! | GTTTTTGTACATGGTTTGGT+TGG | - | chr4_1:7306950-7306969 | Msa0532760:intron | 35.0% |
| !! | GGTTGGTGGTATAACAATAT+AGG | - | chr4_1:7306967-7306986 | Msa0532760:intron | 35.0% |
| ! | GCCTAAAGGTATATTTGGAT+TGG | + | chr4_1:7307082-7307101 | None:intergenic | 35.0% |
| AATACAAAACCCTCCTCATT+TGG | + | chr4_1:7307349-7307368 | None:intergenic | 35.0% | |
| GTGCAAGAAATAGAGGAAAA+TGG | + | chr4_1:7307407-7307426 | None:intergenic | 35.0% | |
| ATGTTAACATGTACCTCCTA+AGG | + | chr4_1:7307490-7307509 | None:intergenic | 35.0% | |
| TAGGATGGTAGCATTTATGA+TGG | - | chr4_1:7307536-7307555 | Msa0532760:CDS | 35.0% | |
| AGCCTGCAATTGTTATCAAT+AGG | - | chr4_1:7307580-7307599 | Msa0532760:CDS | 35.0% | |
| ACCAACAATAAGACCGTAAA+GGG | + | chr4_1:7307749-7307768 | None:intergenic | 35.0% | |
| TACCAACAATAAGACCGTAA+AGG | + | chr4_1:7307750-7307769 | None:intergenic | 35.0% | |
| CTTCTTAATAAGAAGGTTGG+TGG | + | chr4_1:7307845-7307864 | None:intergenic | 35.0% | |
| CACCAACCTTCTTATTAAGA+AGG | - | chr4_1:7307843-7307862 | Msa0532760:intron | 35.0% | |
| CACCTTCTTAATAAGAAGGT+TGG | + | chr4_1:7307848-7307867 | None:intergenic | 35.0% | |
| ACCTTCTTATTAAGAAGGTG+AGG | - | chr4_1:7307848-7307867 | Msa0532760:intron | 35.0% | |
| CCTTCTTATTAAGAAGGTGA+GGG | - | chr4_1:7307849-7307868 | Msa0532760:intron | 35.0% | |
| CTTCTTATTAAGAAGGTGAG+GGG | - | chr4_1:7307850-7307869 | Msa0532760:intron | 35.0% | |
| TTCTTATTAAGAAGGTGAGG+GGG | - | chr4_1:7307851-7307870 | Msa0532760:intron | 35.0% | |
| TACAAACACCATCAAATGAC+AGG | + | chr4_1:7307955-7307974 | None:intergenic | 35.0% | |
| ATGGCATGACACATTTCATA+AGG | + | chr4_1:7308028-7308047 | None:intergenic | 35.0% | |
| !! | ATGATGATGGTTAGTGAACG+TGG | + | chr4_1:7305625-7305644 | None:intergenic | 40.0% |
| GTGGTAAAGGAAGATGATGA+TGG | + | chr4_1:7305638-7305657 | None:intergenic | 40.0% | |
| TCTCTGTTGTGTTGTGGTAA+AGG | + | chr4_1:7305651-7305670 | None:intergenic | 40.0% | |
| TTTCGATCTCTGTTGTGTTG+TGG | + | chr4_1:7305657-7305676 | None:intergenic | 40.0% | |
| TGAAAAGGGATCGGGAAAAA+AGG | + | chr4_1:7305838-7305857 | None:intergenic | 40.0% | |
| TGAATTGATGGAGGAAGGTA+TGG | - | chr4_1:7306119-7306138 | Msa0532760:intron | 40.0% | |
| ! | GAATTGATGGAGGAAGGTAT+GGG | - | chr4_1:7306120-7306139 | Msa0532760:intron | 40.0% |
| ATAGACTTCATCACGAGTTC+GGG | + | chr4_1:7306204-7306223 | None:intergenic | 40.0% | |
| GTCTATTGTACCCGTTGTTA+TGG | - | chr4_1:7306218-7306237 | Msa0532760:intron | 40.0% | |
| AAAACACCAGCCATAACAAC+GGG | + | chr4_1:7306231-7306250 | None:intergenic | 40.0% | |
| CAAAACACCAGCCATAACAA+CGG | + | chr4_1:7306232-7306251 | None:intergenic | 40.0% | |
| ! | GTTGTTATGGCTGGTGTTTT+GGG | - | chr4_1:7306231-7306250 | Msa0532760:intron | 40.0% |
| !! | GCTGGTGTTTTGGGTATTTA+TGG | - | chr4_1:7306240-7306259 | Msa0532760:intron | 40.0% |
| GGTATGGCTATTGGAATTGT+TGG | - | chr4_1:7306384-7306403 | Msa0532760:intron | 40.0% | |
| !! | ATTGGAATTGTTGGTGATGC+TGG | - | chr4_1:7306393-7306412 | Msa0532760:intron | 40.0% |
| ATTGACACTTAGAGCCTGTT+TGG | - | chr4_1:7306522-7306541 | Msa0532760:intron | 40.0% | |
| TTGACACTTAGAGCCTGTTT+GGG | - | chr4_1:7306523-7306542 | Msa0532760:intron | 40.0% | |
| ! | GTTTTGTGAGATTGTTTGGG+AGG | + | chr4_1:7306744-7306763 | None:intergenic | 40.0% |
| AGTAGATAGCCAATCCAAAC+AGG | - | chr4_1:7306771-7306790 | Msa0532760:intron | 40.0% | |
| ! | GCATTTTATCGGTGAACTTG+TGG | - | chr4_1:7306818-7306837 | Msa0532760:intron | 40.0% |
| !! | TTTGTACATGGTTTGGTTGG+TGG | - | chr4_1:7306953-7306972 | Msa0532760:intron | 40.0% |
| GGTGGTATAACAATATAGGG+TGG | - | chr4_1:7306971-7306990 | Msa0532760:intron | 40.0% | |
| ! | ATTGGTAGTATAGGGTGGAA+TGG | + | chr4_1:7307064-7307083 | None:intergenic | 40.0% |
| !! | TTTGGATTGGTAGTATAGGG+TGG | + | chr4_1:7307069-7307088 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAA+AGG | + | chr4_1:7307096-7307115 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr4_1:7307096-7307115 | Msa0532760:intron | 40.0% |
| ! | AAGGAAAGGAAAGGCTTTGA+GGG | - | chr4_1:7307124-7307143 | Msa0532760:intron | 40.0% |
| ! | TTTGAGGGGTGCAAAATATG+AGG | - | chr4_1:7307139-7307158 | Msa0532760:intron | 40.0% |
| ! | TTGTATTGGAGGAGGGTTTT+GGG | + | chr4_1:7307313-7307332 | None:intergenic | 40.0% |
| ! | ATTGTATTGGAGGAGGGTTT+TGG | + | chr4_1:7307314-7307333 | None:intergenic | 40.0% |
| ! | TTTAGTTCCTCCAAATGAGG+AGG | - | chr4_1:7307336-7307355 | Msa0532760:intron | 40.0% |
| TTAGTTCCTCCAAATGAGGA+GGG | - | chr4_1:7307337-7307356 | Msa0532760:intron | 40.0% | |
| GAAATAGAGGAAAATGGGAG+AGG | + | chr4_1:7307401-7307420 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr4_1:7307472-7307491 | None:intergenic | 40.0% |
| AAACTCGCAAACAAAGCCTT+AGG | - | chr4_1:7307471-7307490 | Msa0532760:CDS | 40.0% | |
| GGTACATGTTAACATGTCCT+TGG | - | chr4_1:7307495-7307514 | Msa0532760:CDS | 40.0% | |
| CTTCAGCAAAGATGAGGATA+AGG | + | chr4_1:7307720-7307739 | None:intergenic | 40.0% | |
| ATTATCTTGTCTTCACGTGC+TGG | - | chr4_1:7307769-7307788 | Msa0532760:intron | 40.0% | |
| AACACAGCTCCTTACTTACT+CGG | + | chr4_1:7307806-7307825 | None:intergenic | 40.0% | |
| CCCTCACCTTCTTAATAAGA+AGG | + | chr4_1:7307852-7307871 | None:intergenic | 40.0% | |
| AAACACCATCAAATGACAGG+TGG | + | chr4_1:7307952-7307971 | None:intergenic | 40.0% | |
| GTATCAATGGCTCCATTCAG+CGG | - | chr4_1:7305738-7305757 | Msa0532760:three_prime_UTR | 45.0% | |
| GATGAAACTGCACCCTTCTT+TGG | - | chr4_1:7305762-7305781 | Msa0532760:three_prime_UTR | 45.0% | |
| ATTGTACCCGTTGTTATGGC+TGG | - | chr4_1:7306222-7306241 | Msa0532760:intron | 45.0% | |
| ! | CGTTGTTATGGCTGGTGTTT+TGG | - | chr4_1:7306230-7306249 | Msa0532760:intron | 45.0% |
| GGATATGCACATCTTTCGTC+TGG | - | chr4_1:7306330-7306349 | Msa0532760:intron | 45.0% | |
| CTTTCTGCTGGTATGGCTAT+TGG | - | chr4_1:7306375-7306394 | Msa0532760:intron | 45.0% | |
| !! | TTGTTGGTGATGCTGGTGTT+AGG | - | chr4_1:7306400-7306419 | Msa0532760:intron | 45.0% |
| ACATTAGGGCCTGTTTGGAT+TGG | + | chr4_1:7306783-7306802 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr4_1:7307100-7307119 | Msa0532760:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr4_1:7307101-7307120 | Msa0532760:intron | 45.0% |
| GAAGGAAAGGAAAGGCTTTG+AGG | - | chr4_1:7307123-7307142 | Msa0532760:intron | 45.0% | |
| !! | AGGAAAGGAAAGGCTTTGAG+GGG | - | chr4_1:7307125-7307144 | Msa0532760:intron | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+GGG | + | chr4_1:7307312-7307331 | None:intergenic | 45.0% |
| ACAAAACCCTCCTCATTTGG+AGG | + | chr4_1:7307346-7307365 | None:intergenic | 45.0% | |
| ! | AAATGGGAGAGGAGGGTTTT+GGG | + | chr4_1:7307390-7307409 | None:intergenic | 45.0% |
| ! | AAAATGGGAGAGGAGGGTTT+TGG | + | chr4_1:7307391-7307410 | None:intergenic | 45.0% |
| TAGAGGAAAATGGGAGAGGA+GGG | + | chr4_1:7307397-7307416 | None:intergenic | 45.0% | |
| ATAGAGGAAAATGGGAGAGG+AGG | + | chr4_1:7307398-7307417 | None:intergenic | 45.0% | |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr4_1:7307467-7307486 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr4_1:7307468-7307487 | None:intergenic | 45.0% |
| !!! | AAGTTTTGGCTGCTGTGCAT+TGG | + | chr4_1:7307683-7307702 | None:intergenic | 45.0% |
| ! | CAGCAGCCAAAACTTTTCGT+TGG | - | chr4_1:7307688-7307707 | Msa0532760:intron | 45.0% |
| CAAGAGCTTCAGCAAAGATG+AGG | + | chr4_1:7307726-7307745 | None:intergenic | 45.0% | |
| !! | GCCCTTTACGGTCTTATTGT+TGG | - | chr4_1:7307745-7307764 | Msa0532760:intron | 45.0% |
| !! | TTACTTACTCGGCTCTAGAC+TGG | + | chr4_1:7307795-7307814 | None:intergenic | 45.0% |
| ! | AGTCTAGAGCCGAGTAAGTA+AGG | - | chr4_1:7307794-7307813 | Msa0532760:intron | 45.0% |
| !!! | GGGGGTGAATTTTAGTTGTG+CGG | - | chr4_1:7307869-7307888 | Msa0532760:intron | 45.0% |
| GTTGTGCGGTTAGTGATGTT+TGG | - | chr4_1:7307883-7307902 | Msa0532760:intron | 45.0% | |
| ! | TAGCTCCACCTGTCATTTGA+TGG | - | chr4_1:7307944-7307963 | Msa0532760:intron | 45.0% |
| !!! | TCAATTAAAATTTTAAAAAA+TGG | + | chr4_1:7307030-7307049 | None:intergenic | 5.0% |
| CGACGTCGTTGCAGTATCAA+TGG | - | chr4_1:7305725-7305744 | Msa0532760:three_prime_UTR | 50.0% | |
| GCTCCAAGGAAGCCAAAGAA+GGG | + | chr4_1:7305777-7305796 | None:intergenic | 50.0% | |
| ! | GAAGGTATGGGAGCTGCATA+CGG | - | chr4_1:7306132-7306151 | Msa0532760:intron | 50.0% |
| !! | CTTTCGTCTGGTCTTGCTTG+TGG | - | chr4_1:7306342-7306361 | Msa0532760:intron | 50.0% |
| CTCACACATTAGGGCCTGTT+TGG | + | chr4_1:7306788-7306807 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr4_1:7307099-7307118 | Msa0532760:intron | 50.0% |
| TTGGAGGGGAAGGAAAGGAA+AGG | - | chr4_1:7307115-7307134 | Msa0532760:intron | 50.0% | |
| !!! | TATTGGAGGAGGGTTTTGGG+GGG | + | chr4_1:7307310-7307329 | None:intergenic | 50.0% |
| !! | GTATTGGAGGAGGGTTTTGG+GGG | + | chr4_1:7307311-7307330 | None:intergenic | 50.0% |
| ! | AATGGGAGAGGAGGGTTTTG+GGG | + | chr4_1:7307389-7307408 | None:intergenic | 50.0% |
| AGGGGAAGGCTTGGGAAAAA+AGG | + | chr4_1:7307439-7307458 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | chr4_1:7307462-7307481 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr4_1:7307469-7307488 | None:intergenic | 50.0% |
| CTCGCAAACAAAGCCTTAGG+AGG | - | chr4_1:7307474-7307493 | Msa0532760:CDS | 50.0% | |
| GCTGAAGCTCTTGCCCTTTA+CGG | - | chr4_1:7307733-7307752 | Msa0532760:intron | 50.0% | |
| GCAGTTTCATCGCCGCTGAA+TGG | + | chr4_1:7305753-7305772 | None:intergenic | 55.0% | |
| ! | GCACCCTTCTTTGGCTTCCT+TGG | - | chr4_1:7305771-7305790 | Msa0532760:three_prime_UTR | 55.0% |
| GGCTCCAAGGAAGCCAAAGA+AGG | + | chr4_1:7305778-7305797 | None:intergenic | 55.0% | |
| TGAGAAGACGAGAGCAGCTG+CGG | + | chr4_1:7305799-7305818 | None:intergenic | 55.0% | |
| GCATACGGAACAGCGAAGAG+TGG | - | chr4_1:7306147-7306166 | Msa0532760:intron | 55.0% | |
| GGAACAGCGAAGAGTGGTGT+TGG | - | chr4_1:7306153-7306172 | Msa0532760:intron | 55.0% | |
| !! | AGCGAAGAGTGGTGTTGGTG+TGG | - | chr4_1:7306158-7306177 | Msa0532760:intron | 55.0% |
| !! | TGGTGTTGGTGTGGCTTCGA+TGG | - | chr4_1:7306167-7306186 | Msa0532760:intron | 55.0% |
| !! | GGTGTTGGTGTGGCTTCGAT+GGG | - | chr4_1:7306168-7306187 | Msa0532760:intron | 55.0% |
| ! | GGTCTTGCTTGTGGTCTTGC+CGG | - | chr4_1:7306351-7306370 | Msa0532760:intron | 55.0% |
| ! | GTCTTGCTTGTGGTCTTGCC+GGG | - | chr4_1:7306352-7306371 | Msa0532760:intron | 55.0% |
| AGCCATACCAGCAGAAAGCC+CGG | + | chr4_1:7306373-7306392 | None:intergenic | 55.0% | |
| TCGGTGAACTTGTGGGTCCT+CGG | - | chr4_1:7306826-7306845 | Msa0532760:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+AGG | - | chr4_1:7307105-7307124 | Msa0532760:intron | 55.0% | |
| GGAGTTTGGAGGGGAAGGAA+AGG | - | chr4_1:7307110-7307129 | Msa0532760:intron | 55.0% | |
| !!! | GGGTTTTGGGGGGTTTTGGA+GGG | + | chr4_1:7307300-7307319 | None:intergenic | 55.0% |
| !!! | AGGGTTTTGGGGGGTTTTGG+AGG | + | chr4_1:7307301-7307320 | None:intergenic | 55.0% |
| !!! | AGGAGGGTTTTGGGGGGTTT+TGG | + | chr4_1:7307304-7307323 | None:intergenic | 55.0% |
| !! | ATGGGAGAGGAGGGTTTTGG+GGG | + | chr4_1:7307388-7307407 | None:intergenic | 55.0% |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr4_1:7307463-7307482 | None:intergenic | 55.0% | |
| TGCCGGGCTTTCTGCTGGTA+TGG | - | chr4_1:7306368-7306387 | Msa0532760:intron | 60.0% | |
| !!! | TGGGAGAGGAGGGTTTTGGG+GGG | + | chr4_1:7307387-7307406 | None:intergenic | 60.0% |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr4_1:7307457-7307476 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | chr4_1:7307458-7307477 | None:intergenic | 60.0% | |
| GGTCTTGCCGGGCTTTCTGC+TGG | - | chr4_1:7306363-7306382 | Msa0532760:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | + | chr4_1:7307447-7307466 | None:intergenic | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | chr4_1:7307453-7307472 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | chr4_1:7307459-7307478 | None:intergenic | 65.0% | |
| CGAGAGCAGCTGCGGCTCCA+AGG | + | chr4_1:7305791-7305810 | None:intergenic | 70.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | + | chr4_1:7307448-7307467 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 7305615 | 7308185 | 7305615 | ID=Msa0532760;Name=Msa0532760 |
| chr4_1 | mRNA | 7305615 | 7308185 | 7305615 | ID=Msa0532760-mRNA-1;Parent=Msa0532760;Name=Msa0532760-mRNA-1;_AED=0.02;_eAED=0.02;_QI=129|1|1|1|1|1|3|375|164 |
| chr4_1 | exon | 7305615 | 7306122 | 7305615 | ID=Msa0532760-mRNA-1:exon:2529;Parent=Msa0532760-mRNA-1 |
| chr4_1 | exon | 7307379 | 7307664 | 7307379 | ID=Msa0532760-mRNA-1:exon:2528;Parent=Msa0532760-mRNA-1 |
| chr4_1 | exon | 7307981 | 7308185 | 7307981 | ID=Msa0532760-mRNA-1:exon:2527;Parent=Msa0532760-mRNA-1 |
| chr4_1 | five_prime_UTR | 7308057 | 7308185 | 7308057 | ID=Msa0532760-mRNA-1:five_prime_utr;Parent=Msa0532760-mRNA-1 |
| chr4_1 | CDS | 7307981 | 7308056 | 7307981 | ID=Msa0532760-mRNA-1:cds;Parent=Msa0532760-mRNA-1 |
| chr4_1 | CDS | 7307379 | 7307664 | 7307379 | ID=Msa0532760-mRNA-1:cds;Parent=Msa0532760-mRNA-1 |
| chr4_1 | CDS | 7305990 | 7306122 | 7305990 | ID=Msa0532760-mRNA-1:cds;Parent=Msa0532760-mRNA-1 |
| chr4_1 | three_prime_UTR | 7305615 | 7305989 | 7305615 | ID=Msa0532760-mRNA-1:three_prime_utr;Parent=Msa0532760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
