AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144720 MtrunA17_Chr3g0077161 91.837 98 4 1 1 94 1 98 5.90e-61 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144720 AT1G72170.1 68.889 90 24 2 1 87 1 89 9.59e-40 127
Msa1144720 AT1G22520.1 73.418 79 17 1 14 88 12 90 9.36e-38 122
Msa1144720 AT1G22520.2 73.418 79 17 1 14 88 12 90 1.16e-36 122

Find 53 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATAGATGATGCTATATT+TGG 0.117210 7_4:-21078149 Msa1144720:exon
CGCTGGGCTTCTATTGCTTT+TGG 0.217123 7_4:-21078855 Msa1144720:CDS
TTCGGTTGTGCAAGCTTTGC+TGG 0.240747 7_4:+21078774 None:intergenic
CGATGTTTGAATTAATAGTA+TGG 0.283744 7_4:-21077814 Msa1144720:three_prime_UTR
GAATGTTCTCGTCTGTTTGA+TGG 0.310140 7_4:-21078801 Msa1144720:CDS
TAAACATAGTGCAGAATTAC+AGG 0.331734 7_4:+21077974 None:intergenic
TTTGGTGCTGGAGTGGGAAT+AGG 0.400010 7_4:-21078837 Msa1144720:CDS
TATATTTGGATCCTGGTTCC+TGG 0.403974 7_4:-21078135 Msa1144720:three_prime_UTR
TAGGGAGTCCTCAGACTCGC+TGG 0.408022 7_4:-21078872 Msa1144720:CDS
ATGAAATCAATGTGATTTCT+CGG 0.413662 7_4:+21084379 None:intergenic
CTAATTATCTTTATTCCATA+CGG 0.417032 7_4:-21077907 Msa1144720:three_prime_UTR
TCCAACTCGTTCCGTTCCGA+TGG 0.420966 7_4:-21084268 Msa1144720:exon
GTGATTTCTCGGGTCGGGTC+GGG 0.426564 7_4:+21084390 None:intergenic
ATCAAGGCAGGCATCCCATT+TGG 0.436230 7_4:+21084200 None:intergenic
CAGAATTACAGGAGAACAAA+AGG 0.443509 7_4:+21077985 None:intergenic
TAAAGGAACAATCAATAGTC+AGG 0.443513 7_4:+21078092 None:intergenic
AGTATGACGTCGATGCCAAA+TGG 0.464332 7_4:-21084215 Msa1144720:CDS
TGTGATTTCTCGGGTCGGGT+CGG 0.471236 7_4:+21084389 None:intergenic
GAGGAGACCGCCGAAAGCAC+CGG 0.471355 7_4:+21084143 None:intergenic
GCCGAAAGCACCGGCAAAAG+AGG 0.478465 7_4:+21084152 None:intergenic
AGCTTGGAAATAAATTTCCA+TGG 0.487182 7_4:+21078013 None:intergenic
TGTGCTACCTCTGAGTCCTT+CGG 0.490928 7_4:+21078756 None:intergenic
TGTTTCACTGTCCAGGAACC+AGG 0.491220 7_4:+21078124 None:intergenic
ATGATGCTATATTTGGATCC+TGG 0.491507 7_4:-21078142 Msa1144720:three_prime_UTR
AATGCTCTGTTTCACTGTCC+AGG 0.494714 7_4:+21078117 None:intergenic
TAATTATCTTTATTCCATAC+GGG 0.497275 7_4:-21077906 Msa1144720:three_prime_UTR
TCAATGTGATTTCTCGGGTC+GGG 0.502238 7_4:+21084385 None:intergenic
TTCATTTCATTCAACTAAGA+CGG 0.509975 7_4:-21084305 Msa1144720:five_prime_UTR
AGCGGCGGACGGTGAGATCA+AGG 0.514989 7_4:+21084184 None:intergenic
TGAAATCAATGTGATTTCTC+GGG 0.518337 7_4:+21084380 None:intergenic
TAAATTAACAATACTGCCCA+TGG 0.526410 7_4:-21078030 Msa1144720:three_prime_UTR
GTGGGCTGGGCGAGGCCTTG+TGG 0.529050 7_4:-21084424 Msa1144720:five_prime_UTR
ATAGAAGCCCAGCGAGTCTG+AGG 0.535981 7_4:+21078864 None:intergenic
CAATAGCTATAACTGAGTAA+AGG 0.539456 7_4:+21078075 None:intergenic
ATCAATGTGATTTCTCGGGT+CGG 0.544038 7_4:+21084384 None:intergenic
GTATGACGTCGATGCCAAAT+GGG 0.550085 7_4:-21084214 Msa1144720:CDS
CCAACTCGTTCCGTTCCGAT+GGG 0.554127 7_4:-21084267 Msa1144720:exon
GGAGAAGGTACTGACTGAAA+AGG 0.557850 7_4:+21084121 None:intergenic
AGAACAAAAGGATAACAGCT+TGG 0.559366 7_4:+21077997 None:intergenic
CGGGTTGTGTTTAAACCACA+AGG 0.562664 7_4:+21084409 None:intergenic
CCCATCGGAACGGAACGAGT+TGG 0.566539 7_4:+21084267 None:intergenic
ATCGTATGCAAAATACATGT+AGG 0.566794 7_4:+21077833 None:intergenic
GCGGACGGTGAGATCAAGGC+AGG 0.574717 7_4:+21084188 None:intergenic
ATTTCATTCAACTAAGACGG+TGG 0.583166 7_4:-21084302 Msa1144720:five_prime_UTR
AGGGAGTCCTCAGACTCGCT+GGG 0.588615 7_4:-21078871 Msa1144720:CDS
AGCAAAGCTTGCACAACCGA+AGG 0.600829 7_4:-21078772 Msa1144720:CDS
GCTTGGAAATAAATTTCCAT+GGG 0.603610 7_4:+21078014 None:intergenic
GGAGTAAACGAAGCGGCGGA+CGG 0.621586 7_4:+21084173 None:intergenic
GAAGGTACTGACTGAAAAGG+AGG 0.624142 7_4:+21084124 None:intergenic
AAGAGGAGTAAACGAAGCGG+CGG 0.665689 7_4:+21084169 None:intergenic
TTTCATTGAGAGCACGCACG+CGG 0.669006 7_4:-21084362 Msa1144720:five_prime_UTR
TGCACAACCGAAGGACTCAG+AGG 0.701693 7_4:-21078763 Msa1144720:intron
CAAAAGAGGAGTAAACGAAG+CGG 0.703591 7_4:+21084166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTATAGAATGAA+AGG + chr7_4:21078216-21078235 None:intergenic 10.0%
!! ATGATTTATATTAAAGAATT+AGG - chr7_4:21078667-21078686 Msa1144720:intron 10.0%
!! TGATTTATATTAAAGAATTA+GGG - chr7_4:21078668-21078687 Msa1144720:intron 10.0%
!!! AAATTGTTTTTTATAGTTTA+AGG + chr7_4:21078874-21078893 None:intergenic 10.0%
!! AACTATAAAAAACAATTTAA+AGG - chr7_4:21078876-21078895 Msa1144720:intron 10.0%
!!! AATCACATAATTTTAAAATT+AGG - chr7_4:21081145-21081164 Msa1144720:intron 10.0%
!!! ATCACATAATTTTAAAATTA+GGG - chr7_4:21081146-21081165 Msa1144720:intron 10.0%
!!! TAGTTTATACTTTTTTTTTT+TGG + chr7_4:21081996-21082015 None:intergenic 10.0%
!!! ATTAGTTTATACTTTTTTTT+TGG + chr7_4:21081998-21082017 None:intergenic 10.0%
!!! TAGATTTTTATTTTTTTAGA+AGG + chr7_4:21082476-21082495 None:intergenic 10.0%
!! AAAAATAGAAATATAGTATT+GGG + chr7_4:21082965-21082984 None:intergenic 10.0%
!! TAAAAATAGAAATATAGTAT+TGG + chr7_4:21082966-21082985 None:intergenic 10.0%
!! TTAATTCCATAATTATAATT+TGG + chr7_4:21083251-21083270 None:intergenic 10.0%
!! AATAATATACAGTTACAATT+AGG + chr7_4:21078113-21078132 None:intergenic 15.0%
!! AATTGTAACTGTATATTATT+AGG - chr7_4:21078113-21078132 Msa1144720:three_prime_UTR 15.0%
!! ATTGTAACTGTATATTATTA+GGG - chr7_4:21078114-21078133 Msa1144720:three_prime_UTR 15.0%
!!! AAATTGTTTTTTATGGTTTA+AGG + chr7_4:21078903-21078922 None:intergenic 15.0%
!! AACCATAAAAAACAATTTAA+AGG - chr7_4:21078905-21078924 Msa1144720:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr7_4:21079030-21079049 Msa1144720:intron 15.0%
!!! ATTAAGCCTTTAAATTTTAA+AGG + chr7_4:21079771-21079790 None:intergenic 15.0%
!!! TCACATAATTTTAAAATTAG+GGG - chr7_4:21081147-21081166 Msa1144720:intron 15.0%
!!! TTGATTTGAAGTATTAAATT+TGG + chr7_4:21081192-21081211 None:intergenic 15.0%
!!! TTTTATTAAGGAAAAAACTT+AGG - chr7_4:21082652-21082671 Msa1144720:intron 15.0%
!! TTTAAATCACCAATTAATAA+AGG + chr7_4:21083029-21083048 None:intergenic 15.0%
!!! TATTAATTGGTGATTTAAAT+AGG - chr7_4:21083030-21083049 Msa1144720:intron 15.0%
!!! TTAGTTATTTTTATTGTACT+AGG - chr7_4:21083272-21083291 Msa1144720:intron 15.0%
!!! TAGTTATTTTTATTGTACTA+GGG - chr7_4:21083273-21083292 Msa1144720:intron 15.0%
!!! TATTTTCTTGTTTATATATG+TGG - chr7_4:21083473-21083492 Msa1144720:intron 15.0%
!!! ATTTTCTTGTTTATATATGT+GGG - chr7_4:21083474-21083493 Msa1144720:intron 15.0%
!! AAAAATAGAAATATTGCATT+GGG + chr7_4:21083614-21083633 None:intergenic 15.0%
!! TAAAAATAGAAATATTGCAT+TGG + chr7_4:21083615-21083634 None:intergenic 15.0%
!! AAAATGAATGAATGAATCTA+CGG + chr7_4:21078082-21078101 None:intergenic 20.0%
!!! TTTAGCTATTATTTTTAGAC+TGG - chr7_4:21078782-21078801 Msa1144720:CDS 20.0%
!!! GACCTTTAAATTGTTTTTTA+TGG + chr7_4:21078881-21078900 None:intergenic 20.0%
!!! TTGTTTTTCATCATAGTTTA+AGG - chr7_4:21078981-21079000 Msa1144720:intron 20.0%
!! TATTAAAATCAACTAGACTA+TGG + chr7_4:21079025-21079044 None:intergenic 20.0%
!!! CTAGTTGATTTTAATAGTTT+AGG - chr7_4:21079029-21079048 Msa1144720:intron 20.0%
!! TATTGTAAAGAAGTTTAACA+CGG - chr7_4:21079198-21079217 Msa1144720:intron 20.0%
!!! AGAAAGCCTTTAAAATTTAA+AGG - chr7_4:21079762-21079781 Msa1144720:intron 20.0%
!! GAGACTATAAAATTATAAAG+GGG + chr7_4:21079848-21079867 None:intergenic 20.0%
!! GGAGACTATAAAATTATAAA+GGG + chr7_4:21079849-21079868 None:intergenic 20.0%
!! CATTTGGTTAAAATTTGATT+GGG + chr7_4:21079870-21079889 None:intergenic 20.0%
!! ACATTTGGTTAAAATTTGAT+TGG + chr7_4:21079871-21079890 None:intergenic 20.0%
!!! TAATTCAATAACCATGTTTT+AGG - chr7_4:21079978-21079997 Msa1144720:intron 20.0%
!! ACTATCTAATTACTAAAACA+TGG + chr7_4:21080502-21080521 None:intergenic 20.0%
!! ATATTTATGTTATTGCCAAA+AGG - chr7_4:21080547-21080566 Msa1144720:intron 20.0%
!! AACATGAATGAATTATGAAT+TGG - chr7_4:21080583-21080602 Msa1144720:intron 20.0%
!! GAGAAAATATAAATACTTGT+CGG - chr7_4:21080903-21080922 Msa1144720:intron 20.0%
!!! CACATAATTTTAAAATTAGG+GGG - chr7_4:21081148-21081167 Msa1144720:intron 20.0%
!!! ACATAATTTTAAAATTAGGG+GGG - chr7_4:21081149-21081168 Msa1144720:intron 20.0%
!!! AAATCAATTTTGTCAAGATT+GGG - chr7_4:21081205-21081224 Msa1144720:intron 20.0%
!! TAATATGTAAAATTGCAACT+AGG - chr7_4:21081263-21081282 Msa1144720:intron 20.0%
!! ACAATCATACTATTTGTAAA+TGG + chr7_4:21081415-21081434 None:intergenic 20.0%
!!! TTATAAAGAGGCTTTTATTA+AGG - chr7_4:21082640-21082659 Msa1144720:intron 20.0%
!!! AACAAACTTTGAGAAAATTA+TGG + chr7_4:21082739-21082758 None:intergenic 20.0%
!! AAACTTAAGTACAATTCTTT+AGG + chr7_4:21082808-21082827 None:intergenic 20.0%
!! AAAAATAGCCCAATATATTT+GGG + chr7_4:21083174-21083193 None:intergenic 20.0%
!! AAATACATATGTAACTGAAT+TGG + chr7_4:21083928-21083947 None:intergenic 20.0%
!!! TTATGTTCTGAAAGAAAAAA+AGG - chr7_4:21084209-21084228 Msa1144720:CDS 20.0%
!! CTAATTATCTTTATTCCATA+CGG - chr7_4:21084256-21084275 Msa1144720:exon 20.0%
!! TAATTATCTTTATTCCATAC+GGG - chr7_4:21084257-21084276 Msa1144720:exon 20.0%
!!! ACTTATCAGTGATATTTTTT+TGG + chr7_4:21084416-21084435 None:intergenic 20.0%
! ATGAAATCAATGTGATTTCT+CGG + chr7_4:21077787-21077806 None:intergenic 25.0%
! TTCATTTCATTCAACTAAGA+CGG - chr7_4:21077858-21077877 Msa1144720:three_prime_UTR 25.0%
! AAATTATAGAATGAAAGGTG+AGG + chr7_4:21078211-21078230 None:intergenic 25.0%
! ATGAAAATTTGTGAGAATGA+GGG + chr7_4:21078279-21078298 None:intergenic 25.0%
!! TTTTTGTATATGCTATAAGC+TGG - chr7_4:21078463-21078482 Msa1144720:intron 25.0%
! TTTCTAAGCTATATTCGAAT+TGG - chr7_4:21078487-21078506 Msa1144720:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+AGG + chr7_4:21078578-21078597 None:intergenic 25.0%
! AATCTAAACAAGAACTTAGA+CGG - chr7_4:21078624-21078643 Msa1144720:intron 25.0%
! AAAATAGTTGGATGAGATAA+TGG + chr7_4:21078939-21078958 None:intergenic 25.0%
!! CAACAAATTTTGTTAACAGA+GGG + chr7_4:21078964-21078983 None:intergenic 25.0%
!! ACAACAAATTTTGTTAACAG+AGG + chr7_4:21078965-21078984 None:intergenic 25.0%
! TCTTTACAATAAATCACTTC+AGG + chr7_4:21079189-21079208 None:intergenic 25.0%
!! TTTTATGCTTAATTGCATAG+TGG - chr7_4:21079467-21079486 Msa1144720:intron 25.0%
! CAGCGTAAAAATAAAATCTA+GGG - chr7_4:21079574-21079593 Msa1144720:intron 25.0%
! AGCGTAAAAATAAAATCTAG+GGG - chr7_4:21079575-21079594 Msa1144720:intron 25.0%
! GTTCAAAATGCAAAATATAG+CGG - chr7_4:21079597-21079616 Msa1144720:intron 25.0%
!!! AGCGGTATTTTGTATTTTTT+AGG - chr7_4:21079615-21079634 Msa1144720:intron 25.0%
!!! TTTTGTATTTTTTAGGTTCG+AGG - chr7_4:21079622-21079641 Msa1144720:intron 25.0%
!!! TTTGTATTTTTTAGGTTCGA+GGG - chr7_4:21079623-21079642 Msa1144720:intron 25.0%
! ATTATAAAGGGGATAAACTA+GGG + chr7_4:21079837-21079856 None:intergenic 25.0%
! AATTATAAAGGGGATAAACT+AGG + chr7_4:21079838-21079857 None:intergenic 25.0%
! GGGAGACTATAAAATTATAA+AGG + chr7_4:21079850-21079869 None:intergenic 25.0%
! TTAACCAAATGTTAACCATA+AGG - chr7_4:21079879-21079898 Msa1144720:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr7_4:21080228-21080247 Msa1144720:intron 25.0%
!! TTTTCTAATGGTTTCTCAAA+AGG + chr7_4:21080363-21080382 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr7_4:21080370-21080389 Msa1144720:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr7_4:21080410-21080429 None:intergenic 25.0%
!! TTCAAAAGTTCTTATCCTTT+TGG + chr7_4:21080565-21080584 None:intergenic 25.0%
! TATTTGGTCAAAATCTGATT+GGG - chr7_4:21081060-21081079 Msa1144720:intron 25.0%
!! CAAATCAATTTTGTCAAGAT+TGG - chr7_4:21081204-21081223 Msa1144720:intron 25.0%
! TACTATTTGTAAATGGAGAA+GGG + chr7_4:21081408-21081427 None:intergenic 25.0%
! ATACTATTTGTAAATGGAGA+AGG + chr7_4:21081409-21081428 None:intergenic 25.0%
! TGACATTTATATCTATTCCT+TGG + chr7_4:21081627-21081646 None:intergenic 25.0%
!! GTATCTTTTCAGATTGTAAT+AGG - chr7_4:21081733-21081752 Msa1144720:intron 25.0%
! GAATACCAACTTAGATAATA+AGG + chr7_4:21082454-21082473 None:intergenic 25.0%
! AAACTTTGGTACTTATAAAG+AGG - chr7_4:21082628-21082647 Msa1144720:intron 25.0%
! TTGAGAAAATTATGGATTTG+AGG + chr7_4:21082731-21082750 None:intergenic 25.0%
! TAGCAAGACACATTAATAAA+AGG + chr7_4:21082834-21082853 None:intergenic 25.0%
!! AGAAATATAGTATTGGGAAA+TGG + chr7_4:21082959-21082978 None:intergenic 25.0%
! TAGCATTCTCCTTTATTAAT+TGG - chr7_4:21083017-21083036 Msa1144720:intron 25.0%
! CAAAAATAGCCCAATATATT+TGG + chr7_4:21083175-21083194 None:intergenic 25.0%
! TAAAAAAAATGTCAAGGTCA+TGG + chr7_4:21083212-21083231 None:intergenic 25.0%
! AGACTGTAAAAAAAATGTCA+AGG + chr7_4:21083218-21083237 None:intergenic 25.0%
! TTAAGGAAATCAAAAGTAGT+AGG - chr7_4:21083525-21083544 Msa1144720:intron 25.0%
!! CGGATCAGATTAAAATTTTA+TGG - chr7_4:21083807-21083826 Msa1144720:intron 25.0%
!! GATTAAAATTTTATGGCCTA+TGG - chr7_4:21083814-21083833 Msa1144720:intron 25.0%
! AGCACAAAATATACTTTGTT+AGG + chr7_4:21083969-21083988 None:intergenic 25.0%
! TGAATAGATGATGCTATATT+TGG - chr7_4:21084014-21084033 Msa1144720:intron 25.0%
! CAAAAAGAATTCTTATTGCT+GGG + chr7_4:21084310-21084329 None:intergenic 25.0%
! CGATGTTTGAATTAATAGTA+TGG - chr7_4:21084349-21084368 Msa1144720:five_prime_UTR 25.0%
TGAAATCAATGTGATTTCTC+GGG + chr7_4:21077786-21077805 None:intergenic 30.0%
!!! TGTTCTTTATTTTCACCCAT+CGG + chr7_4:21077914-21077933 None:intergenic 30.0%
GATGAAAATTTGTGAGAATG+AGG + chr7_4:21078280-21078299 None:intergenic 30.0%
TATAGCACAATCACTTATCA+TGG - chr7_4:21078365-21078384 Msa1144720:intron 30.0%
! AGCTAACTGTAATTTTCACA+AGG + chr7_4:21078540-21078559 None:intergenic 30.0%
GCTTATTTGAACTTATCTAC+TGG + chr7_4:21078603-21078622 None:intergenic 30.0%
! GTCTAAGTTCTTGTTTAGAT+TGG + chr7_4:21078625-21078644 None:intergenic 30.0%
! ACTTGTCTAGAATATAGAGT+CGG + chr7_4:21078713-21078732 None:intergenic 30.0%
TATATTCTAGACAAGTGAGT+GGG - chr7_4:21078717-21078736 Msa1144720:intron 30.0%
! TTTTTAGACTGGAGTATAGT+TGG - chr7_4:21078793-21078812 Msa1144720:CDS 30.0%
! TTGGATGAGATAATGGTTTA+AGG + chr7_4:21078932-21078951 None:intergenic 30.0%
TGATGAGACAGTGATAATTT+AGG - chr7_4:21079060-21079079 Msa1144720:intron 30.0%
GATGAGACAGTGATAATTTA+GGG - chr7_4:21079061-21079080 Msa1144720:intron 30.0%
GGATCAAATTGACTGTTTAT+TGG - chr7_4:21079082-21079101 Msa1144720:intron 30.0%
AAATGCCTAGAATGAGTATT+TGG + chr7_4:21079252-21079271 None:intergenic 30.0%
TACGCATACTTAAACCAAAA+TGG - chr7_4:21079277-21079296 Msa1144720:intron 30.0%
TCAAATAATTCCACAGACAT+TGG - chr7_4:21079409-21079428 Msa1144720:intron 30.0%
!!! GTTCAAACTTTTGAGTTCTT+GGG - chr7_4:21079547-21079566 Msa1144720:intron 30.0%
GCAGCGTAAAAATAAAATCT+AGG - chr7_4:21079573-21079592 Msa1144720:intron 30.0%
TACAAATCATGTTACCATCA+GGG + chr7_4:21079683-21079702 None:intergenic 30.0%
TTACAAATCATGTTACCATC+AGG + chr7_4:21079684-21079703 None:intergenic 30.0%
! CATGTGTACATGAAATTTTG+TGG + chr7_4:21079720-21079739 None:intergenic 30.0%
TTATAAAGGGGATAAACTAG+GGG + chr7_4:21079836-21079855 None:intergenic 30.0%
AACACCTTATGGTTAACATT+TGG + chr7_4:21079886-21079905 None:intergenic 30.0%
CTTATCTCTATTGAACATGT+TGG - chr7_4:21079931-21079950 Msa1144720:intron 30.0%
!! ATTGAACATGTTGGTTTGAA+AGG - chr7_4:21079940-21079959 Msa1144720:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr7_4:21080224-21080243 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr7_4:21080294-21080313 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr7_4:21080295-21080314 Msa1144720:intron 30.0%
! GTTTCTCAAAAGGTTTTCTT+AGG + chr7_4:21080353-21080372 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr7_4:21080375-21080394 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr7_4:21080414-21080433 Msa1144720:intron 30.0%
! TTTTATAGGATCGTGAATCT+TGG - chr7_4:21080653-21080672 Msa1144720:intron 30.0%
! GCGCAAAAGTATAAAAGTAT+AGG + chr7_4:21080680-21080699 None:intergenic 30.0%
!! CAAACGTTTCTAGTTAACAT+TGG + chr7_4:21080791-21080810 None:intergenic 30.0%
CAATGTTAACTAGAAACGTT+TGG - chr7_4:21080789-21080808 Msa1144720:intron 30.0%
TCATAACACAACTTGAGATT+CGG + chr7_4:21080885-21080904 None:intergenic 30.0%
GTTGCAAAATGAAGAAATCA+TGG - chr7_4:21081021-21081040 Msa1144720:intron 30.0%
AAAATGAAGAAATCATGGAG+AGG - chr7_4:21081026-21081045 Msa1144720:intron 30.0%
AAATGAAGAAATCATGGAGA+GGG - chr7_4:21081027-21081046 Msa1144720:intron 30.0%
GTATTTGGTCAAAATCTGAT+TGG - chr7_4:21081059-21081078 Msa1144720:intron 30.0%
ATTTGGTCAAAATCTGATTG+GGG - chr7_4:21081061-21081080 Msa1144720:intron 30.0%
!! ATTTGGCTTAATTCCAGTTT+TGG + chr7_4:21081175-21081194 None:intergenic 30.0%
!!! TGTATAACTTTTCAAGTTGG+TGG + chr7_4:21081361-21081380 None:intergenic 30.0%
!!! ACGTGTATAACTTTTCAAGT+TGG + chr7_4:21081364-21081383 None:intergenic 30.0%
!! TAAAGTTAGTCTTGATGATC+AGG + chr7_4:21081456-21081475 None:intergenic 30.0%
AGTCAATTGTTGGATATAGA+TGG + chr7_4:21081497-21081516 None:intergenic 30.0%
! TAAATTCCATTGCTCTGAAT+AGG - chr7_4:21081541-21081560 Msa1144720:intron 30.0%
! CTTTTCAGATTGTAATAGGA+AGG - chr7_4:21081737-21081756 Msa1144720:intron 30.0%
GTAATAGGAAGGTTAAGAAT+AGG - chr7_4:21081748-21081767 Msa1144720:intron 30.0%
TAATTTAGACTATGTACCTG+TGG - chr7_4:21082014-21082033 Msa1144720:intron 30.0%
ACATTGAGACAATTTAAGTG+TGG - chr7_4:21082045-21082064 Msa1144720:intron 30.0%
TAATTTAGACTATGTACCTG+TGG - chr7_4:21082014-21082033 Msa1144720:intron 30.0%
ATACAATTAAACCAAAGACG+TGG - chr7_4:21082166-21082185 Msa1144720:intron 30.0%
TACAATTAAACCAAAGACGT+GGG - chr7_4:21082167-21082186 Msa1144720:intron 30.0%
ATCAAAGAGTTACTCTTGAT+AGG + chr7_4:21082235-21082254 None:intergenic 30.0%
!!! GTGTAGTTTTTTGCACATTT+GGG + chr7_4:21082375-21082394 None:intergenic 30.0%
! TAAGTTCTGATAAAAACGCT+CGG + chr7_4:21082397-21082416 None:intergenic 30.0%
AATCTTATCACGAGTATCAA+AGG - chr7_4:21082425-21082444 Msa1144720:intron 30.0%
GGATACCTTATTATCTAAGT+TGG - chr7_4:21082446-21082465 Msa1144720:intron 30.0%
ATATGCAGACTTTGCAAAAT+AGG + chr7_4:21082518-21082537 None:intergenic 30.0%
TTATGGATTTGAGGAAATCA+TGG + chr7_4:21082722-21082741 None:intergenic 30.0%
!! CTCAAAGTTTGTTATATCCA+AGG - chr7_4:21082746-21082765 Msa1144720:intron 30.0%
! AATTAAAAGTACGTCTTCCT+TGG + chr7_4:21082766-21082785 None:intergenic 30.0%
! AGCTTTTCTCCCAAATATAT+TGG - chr7_4:21083162-21083181 Msa1144720:intron 30.0%
! GCTTTTCTCCCAAATATATT+GGG - chr7_4:21083163-21083182 Msa1144720:intron 30.0%
ACCTCGCCAAATTATAATTA+TGG - chr7_4:21083242-21083261 Msa1144720:intron 30.0%
TCCATAATTATAATTTGGCG+AGG + chr7_4:21083246-21083265 None:intergenic 30.0%
TTCCTTAACAAGTACACTTA+GGG + chr7_4:21083513-21083532 None:intergenic 30.0%
TTTCCTTAACAAGTACACTT+AGG + chr7_4:21083514-21083533 None:intergenic 30.0%
ACACACACTCCTATATATAT+AGG - chr7_4:21083706-21083725 Msa1144720:intron 30.0%
CACACACTCCTATATATATA+GGG - chr7_4:21083707-21083726 Msa1144720:intron 30.0%
ACACACTCCTATATATATAG+GGG - chr7_4:21083708-21083727 Msa1144720:intron 30.0%
GATACATCCCCTATATATAT+AGG + chr7_4:21083718-21083737 None:intergenic 30.0%
TATTTATCAAGAGAGTTGAG+AGG - chr7_4:21083754-21083773 Msa1144720:intron 30.0%
AGCCATTAGATCAAATTGTA+CGG - chr7_4:21083787-21083806 Msa1144720:intron 30.0%
ATCCGTACAATTTGATCTAA+TGG + chr7_4:21083792-21083811 None:intergenic 30.0%
TAAAGGAACAATCAATAGTC+AGG + chr7_4:21084074-21084093 None:intergenic 30.0%
CAATAGCTATAACTGAGTAA+AGG + chr7_4:21084091-21084110 None:intergenic 30.0%
TAAATTAACAATACTGCCCA+TGG - chr7_4:21084133-21084152 Msa1144720:intron 30.0%
GCTTGGAAATAAATTTCCAT+GGG + chr7_4:21084152-21084171 None:intergenic 30.0%
AGCTTGGAAATAAATTTCCA+TGG + chr7_4:21084153-21084172 None:intergenic 30.0%
TAAACATAGTGCAGAATTAC+AGG + chr7_4:21084192-21084211 None:intergenic 30.0%
!!! GGGTGTTTTAAAAGTTGAAT+TGG - chr7_4:21084277-21084296 Msa1144720:five_prime_UTR 30.0%
GCAAAAAGAATTCTTATTGC+TGG + chr7_4:21084311-21084330 None:intergenic 30.0%
ATCGTATGCAAAATACATGT+AGG + chr7_4:21084333-21084352 None:intergenic 30.0%
ATTTCATTCAACTAAGACGG+TGG - chr7_4:21077861-21077880 Msa1144720:three_prime_UTR 35.0%
!! TTTATTTTCACCCATCGGAA+CGG + chr7_4:21077909-21077928 None:intergenic 35.0%
! TCTAAAGCAAAGCAAAGCAA+AGG + chr7_4:21078144-21078163 None:intergenic 35.0%
TTATAGAATGAAAGGTGAGG+AGG + chr7_4:21078208-21078227 None:intergenic 35.0%
AAATTTGTGAGAATGAGGGA+TGG + chr7_4:21078275-21078294 None:intergenic 35.0%
CTATATTCTAGACAAGTGAG+TGG - chr7_4:21078716-21078735 Msa1144720:intron 35.0%
CGTAGAATAAGCAGTCAATT+TGG - chr7_4:21078818-21078837 Msa1144720:CDS 35.0%
TAACAGAGGGACAAAATAGT+TGG + chr7_4:21078951-21078970 None:intergenic 35.0%
! ACCAAAATGGTTGCCTTATT+TGG - chr7_4:21079290-21079309 Msa1144720:intron 35.0%
! ACCAAATAAGGCAACCATTT+TGG + chr7_4:21079294-21079313 None:intergenic 35.0%
AAATGGGTGTGAACCAAATA+AGG + chr7_4:21079306-21079325 None:intergenic 35.0%
! TTATTTGGTTCACACCCATT+TGG - chr7_4:21079305-21079324 Msa1144720:intron 35.0%
TTCATGGTGAAGAGTCATTT+GGG + chr7_4:21079370-21079389 None:intergenic 35.0%
TTTCATGGTGAAGAGTCATT+TGG + chr7_4:21079371-21079390 None:intergenic 35.0%
!! AGTGGAAGTATCATAAAACG+TGG - chr7_4:21079485-21079504 Msa1144720:intron 35.0%
AAACGTGGAATCATAATCAG+TGG - chr7_4:21079500-21079519 Msa1144720:intron 35.0%
!!! GGTTCAAACTTTTGAGTTCT+TGG - chr7_4:21079546-21079565 Msa1144720:intron 35.0%
ACAAATCATGTTACCATCAG+GGG + chr7_4:21079682-21079701 None:intergenic 35.0%
TAAAGGCTTAATTGCAGTGT+TGG - chr7_4:21079779-21079798 Msa1144720:intron 35.0%
AAACCGCACATTAAGAACTA+GGG + chr7_4:21079808-21079827 None:intergenic 35.0%
AAAACCGCACATTAAGAACT+AGG + chr7_4:21079809-21079828 None:intergenic 35.0%
! TAGTTCTTAATGTGCGGTTT+TGG - chr7_4:21079808-21079827 Msa1144720:intron 35.0%
TATAAAGGGGATAAACTAGG+GGG + chr7_4:21079835-21079854 None:intergenic 35.0%
AGCACAAAACACCTAAAACA+TGG + chr7_4:21079992-21080011 None:intergenic 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr7_4:21080017-21080036 Msa1144720:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr7_4:21080026-21080045 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr7_4:21080030-21080049 Msa1144720:intron 35.0%
AGACTAGACAAGATAGGATT+AGG - chr7_4:21080165-21080184 Msa1144720:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr7_4:21080217-21080236 Msa1144720:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr7_4:21080237-21080256 Msa1144720:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr7_4:21080242-21080261 Msa1144720:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr7_4:21080298-21080317 Msa1144720:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr7_4:21080382-21080401 Msa1144720:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr7_4:21080394-21080413 Msa1144720:intron 35.0%
CTACCTAATAATAAGAGACG+AGG - chr7_4:21080622-21080641 Msa1144720:intron 35.0%
GATCCTCGTCTCTTATTATT+AGG + chr7_4:21080628-21080647 None:intergenic 35.0%
! ACGAGGATCAGTTCTTTTAT+AGG - chr7_4:21080639-21080658 Msa1144720:intron 35.0%
AGAAACGTTTGGACATGATT+TGG - chr7_4:21080800-21080819 Msa1144720:intron 35.0%
GAAACGTTTGGACATGATTT+GGG - chr7_4:21080801-21080820 Msa1144720:intron 35.0%
ATGAATCGTTTGAATGTGCA+TGG - chr7_4:21080953-21080972 Msa1144720:intron 35.0%
ATACGTCGTGAACTTTAGAT+GGG - chr7_4:21080979-21080998 Msa1144720:intron 35.0%
TTTGGTCAAAATCTGATTGG+GGG - chr7_4:21081062-21081081 Msa1144720:intron 35.0%
ATTGGGATCTTTACTACGAT+CGG - chr7_4:21081222-21081241 Msa1144720:intron 35.0%
CAAATCCTAGGCAATTACTT+AGG + chr7_4:21081303-21081322 None:intergenic 35.0%
CTAAGTAATTGCCTAGGATT+TGG - chr7_4:21081301-21081320 Msa1144720:intron 35.0%
TGTTGGATATAGATGGATCA+TGG + chr7_4:21081490-21081509 None:intergenic 35.0%
! CACTCTAAGAAGTCAATTGT+TGG + chr7_4:21081507-21081526 None:intergenic 35.0%
! CAACAATTGACTTCTTAGAG+TGG - chr7_4:21081505-21081524 Msa1144720:intron 35.0%
ATATGTCCTATTCAGAGCAA+TGG + chr7_4:21081550-21081569 None:intergenic 35.0%
AAGCTATTTGCCATCAAAGA+TGG + chr7_4:21081594-21081613 None:intergenic 35.0%
ATATCTATTCCTTGGACAGT+AGG + chr7_4:21081619-21081638 None:intergenic 35.0%
TAGCAACATGCAAATATGAC+AGG - chr7_4:21081659-21081678 Msa1144720:intron 35.0%
AAGTAACATAACGAGGAGAA+AGG - chr7_4:21081695-21081714 Msa1144720:intron 35.0%
GAAGGTTAAGAATAGGAAGT+CGG - chr7_4:21081755-21081774 Msa1144720:intron 35.0%
AAGGTTAAGAATAGGAAGTC+GGG - chr7_4:21081756-21081775 Msa1144720:intron 35.0%
GCATTTGCAATCAATGTAAG+TGG - chr7_4:21081811-21081830 Msa1144720:intron 35.0%
TTTGCAATCAATGTAAGTGG+AGG - chr7_4:21081814-21081833 Msa1144720:intron 35.0%
TAGACTTGCAATGCACATAT+AGG - chr7_4:21081871-21081890 Msa1144720:intron 35.0%
! GATCAAGATAGTCTTAAGTG+TGG - chr7_4:21081965-21081984 Msa1144720:intron 35.0%
! AAGATAGTCTTAAGTGTGGA+AGG - chr7_4:21081969-21081988 Msa1144720:intron 35.0%
TGAGACAATTTAAGTGTGGA+AGG - chr7_4:21082049-21082068 Msa1144720:intron 35.0%
TCAAGGAATGAAAAACCTGA+AGG - chr7_4:21082192-21082211 Msa1144720:intron 35.0%
CAAGGAATGAAAAACCTGAA+GGG - chr7_4:21082193-21082212 Msa1144720:intron 35.0%
AAGGAATGAAAAACCTGAAG+GGG - chr7_4:21082194-21082213 Msa1144720:intron 35.0%
GATTACCTATTAGACAATCC+TGG - chr7_4:21082252-21082271 Msa1144720:intron 35.0%
TCTATGCAATTCTATCAGTC+TGG + chr7_4:21082281-21082300 None:intergenic 35.0%
ACACACACACTATTGAGATT+TGG - chr7_4:21082310-21082329 Msa1144720:intron 35.0%
TGAGCAAGTCTACAACATAA+TGG - chr7_4:21082341-21082360 Msa1144720:intron 35.0%
!!! GGTGTAGTTTTTTGCACATT+TGG + chr7_4:21082376-21082395 None:intergenic 35.0%
!! AACCATACGAAAAGCACTTA+AGG + chr7_4:21082685-21082704 None:intergenic 35.0%
! TTCTTTAGGTGCTTTTCGTA+TGG + chr7_4:21082794-21082813 None:intergenic 35.0%
!!! CAATGCAAACATGCTACTTT+TGG + chr7_4:21082888-21082907 None:intergenic 35.0%
CAAAAGTAGCATGTTTGCAT+TGG - chr7_4:21082886-21082905 Msa1144720:intron 35.0%
! TACCCTAAGTGTACTTGTTA+AGG - chr7_4:21083508-21083527 Msa1144720:intron 35.0%
CAAAAGTAGTAGGTTTGCAT+TGG - chr7_4:21083535-21083554 Msa1144720:intron 35.0%
ATGATGCTATATTTGGATCC+TGG - chr7_4:21084021-21084040 Msa1144720:intron 35.0%
AGAACAAAAGGATAACAGCT+TGG + chr7_4:21084169-21084188 None:intergenic 35.0%
CAGAATTACAGGAGAACAAA+AGG + chr7_4:21084181-21084200 None:intergenic 35.0%
!!! CAACTTTTAAAACACCCGTA+TGG + chr7_4:21084274-21084293 None:intergenic 35.0%
ATCAATGTGATTTCTCGGGT+CGG + chr7_4:21077782-21077801 None:intergenic 40.0%
CAAAAGAGGAGTAAACGAAG+CGG + chr7_4:21078000-21078019 None:intergenic 40.0%
! TTCGTTTACTCCTCTTTTGC+CGG - chr7_4:21078001-21078020 Msa1144720:three_prime_UTR 40.0%
CTCTTGCATGAATGACTGTT+TGG - chr7_4:21078321-21078340 Msa1144720:intron 40.0%
ACAAGAACTTAGACGGTCAA+TGG - chr7_4:21078631-21078650 Msa1144720:intron 40.0%
AGAATATAGAGTCGGCTACA+TGG + chr7_4:21078705-21078724 None:intergenic 40.0%
! TTCATGTTTGTTGCTCACTG+TGG + chr7_4:21079151-21079170 None:intergenic 40.0%
GTCCTCCAAATACTCATTCT+AGG - chr7_4:21079244-21079263 Msa1144720:intron 40.0%
TGCCTAGAATGAGTATTTGG+AGG + chr7_4:21079249-21079268 None:intergenic 40.0%
! ACCCATTTGGAACTATGTTC+TGG - chr7_4:21079318-21079337 Msa1144720:intron 40.0%
GCCAGAACATAGTTCCAAAT+GGG + chr7_4:21079322-21079341 None:intergenic 40.0%
TGCCAGAACATAGTTCCAAA+TGG + chr7_4:21079323-21079342 None:intergenic 40.0%
TCATGGTGAAGAGTCATTTG+GGG + chr7_4:21079369-21079388 None:intergenic 40.0%
TTCTGCATGCTCAGATTTCA+TGG + chr7_4:21079386-21079405 None:intergenic 40.0%
AGAAAAGGAACCAATGTCTG+TGG + chr7_4:21079422-21079441 None:intergenic 40.0%
!! TTCCTTTTCTAGCACACAAG+TGG - chr7_4:21079432-21079451 Msa1144720:intron 40.0%
AACCACTTGTGTGCTAGAAA+AGG + chr7_4:21079437-21079456 None:intergenic 40.0%
CTCAAAAGTTTGAACCCCTT+GGG + chr7_4:21079542-21079561 None:intergenic 40.0%
ACTCAAAAGTTTGAACCCCT+TGG + chr7_4:21079543-21079562 None:intergenic 40.0%
TTCAATTGAACCCCCTCAAA+AGG - chr7_4:21079646-21079665 Msa1144720:intron 40.0%
TCAATTGAACCCCCTCAAAA+GGG - chr7_4:21079647-21079666 Msa1144720:intron 40.0%
AACCGCACATTAAGAACTAG+GGG + chr7_4:21079807-21079826 None:intergenic 40.0%
ATAAAGGGGATAAACTAGGG+GGG + chr7_4:21079834-21079853 None:intergenic 40.0%
AATGCAACGTCAACACCTTA+TGG + chr7_4:21079897-21079916 None:intergenic 40.0%
CACTTACTTTACTCTCGTGT+TGG + chr7_4:21080109-21080128 None:intergenic 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG - chr7_4:21080112-21080131 Msa1144720:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG - chr7_4:21080159-21080178 Msa1144720:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr7_4:21080285-21080304 None:intergenic 40.0%
TGACAAGTCATTGTAGCTAC+TGG + chr7_4:21080745-21080764 None:intergenic 40.0%
! GCTACAATGACTTGTCATTG+TGG - chr7_4:21080748-21080767 Msa1144720:intron 40.0%
CTAGTTAACATTGGCACATG+TGG + chr7_4:21080782-21080801 None:intergenic 40.0%
! GACATGATTTGGGTCTCAAA+TGG - chr7_4:21080811-21080830 Msa1144720:intron 40.0%
TTTGGGTCTCAAATGGTTAG+TGG - chr7_4:21080818-21080837 Msa1144720:intron 40.0%
GATACGTCGTGAACTTTAGA+TGG - chr7_4:21080978-21080997 Msa1144720:intron 40.0%
TACGTCGTGAACTTTAGATG+GGG - chr7_4:21080980-21080999 Msa1144720:intron 40.0%
TTGGGATCTTTACTACGATC+GGG - chr7_4:21081223-21081242 Msa1144720:intron 40.0%
TCCTACCTAAGTAATTGCCT+AGG - chr7_4:21081295-21081314 Msa1144720:intron 40.0%
TCCTAGGCAATTACTTAGGT+AGG + chr7_4:21081299-21081318 None:intergenic 40.0%
AGTAATTGCCTAGGATTTGG+AGG - chr7_4:21081304-21081323 Msa1144720:intron 40.0%
GTAATTGCCTAGGATTTGGA+GGG - chr7_4:21081305-21081324 Msa1144720:intron 40.0%
! CAATTGACTTCTTAGAGTGG+AGG - chr7_4:21081508-21081527 Msa1144720:intron 40.0%
TTCTTAGAGTGGAGGAACAA+GGG - chr7_4:21081516-21081535 Msa1144720:intron 40.0%
CTATTTGCCATCAAAGATGG+CGG + chr7_4:21081591-21081610 None:intergenic 40.0%
GAGCTCAAAGTAACATAACG+AGG - chr7_4:21081688-21081707 Msa1144720:intron 40.0%
GATTGCAAATGCAACACCTA+TGG + chr7_4:21081803-21081822 None:intergenic 40.0%
! ATCAATGTAAGTGGAGGCAT+AGG - chr7_4:21081820-21081839 Msa1144720:intron 40.0%
!! TCTTGAACCTAGGGTATTGT+TGG - chr7_4:21081904-21081923 Msa1144720:intron 40.0%
CTCAATGTCTTAGTTTCCAC+AGG + chr7_4:21082033-21082052 None:intergenic 40.0%
CTCAATGTCTTAGTTTCCAC+AGG + chr7_4:21082033-21082052 None:intergenic 40.0%
ACTTCTGTAATTTCCCCTTC+AGG + chr7_4:21082210-21082229 None:intergenic 40.0%
CACACACTATTGAGATTTGG+AGG - chr7_4:21082313-21082332 Msa1144720:intron 40.0%
! CTCCTTAAGTGCTTTTCGTA+TGG - chr7_4:21082680-21082699 Msa1144720:intron 40.0%
GAATGTTCTCGTCTGTTTGA+TGG - chr7_4:21083362-21083381 Msa1144720:intron 40.0%
!! AATGCTAAAGAGTGCCCTTA+GGG + chr7_4:21083653-21083672 None:intergenic 40.0%
!! AAATGCTAAAGAGTGCCCTT+AGG + chr7_4:21083654-21083673 None:intergenic 40.0%
! TATGGCCTATGGTAGTGAAT+AGG - chr7_4:21083825-21083844 Msa1144720:intron 40.0%
ATGCTCCTATTCACTACCAT+AGG + chr7_4:21083833-21083852 None:intergenic 40.0%
!! CTTTTGTTTCCAGATTGTGC+AGG - chr7_4:21083987-21084006 Msa1144720:intron 40.0%
ATTCAGAATCCTGCACAATC+TGG + chr7_4:21083999-21084018 None:intergenic 40.0%
TATATTTGGATCCTGGTTCC+TGG - chr7_4:21084028-21084047 Msa1144720:intron 40.0%
CGGGTTGTGTTTAAACCACA+AGG + chr7_4:21077757-21077776 None:intergenic 45.0%
TCAATGTGATTTCTCGGGTC+GGG + chr7_4:21077781-21077800 None:intergenic 45.0%
!! GCATCGACGTCATACTTTTG+AGG + chr7_4:21077944-21077963 None:intergenic 45.0%
AGTATGACGTCGATGCCAAA+TGG - chr7_4:21077948-21077967 Msa1144720:three_prime_UTR 45.0%
GTATGACGTCGATGCCAAAT+GGG - chr7_4:21077949-21077968 Msa1144720:three_prime_UTR 45.0%
!! GAAGGTACTGACTGAAAAGG+AGG + chr7_4:21078042-21078061 None:intergenic 45.0%
!! GGAGAAGGTACTGACTGAAA+AGG + chr7_4:21078045-21078064 None:intergenic 45.0%
TAGACAAGTGAGTGGGAAAG+AGG - chr7_4:21078724-21078743 Msa1144720:intron 45.0%
AGGACATGTCAAACACAGCT+GGG + chr7_4:21079229-21079248 None:intergenic 45.0%
! TCAGTGGCGTATCTAGAATC+TGG - chr7_4:21079516-21079535 Msa1144720:intron 45.0%
! GTATCTAGAATCTGGCCCAA+GGG - chr7_4:21079524-21079543 Msa1144720:intron 45.0%
! TATCTAGAATCTGGCCCAAG+GGG - chr7_4:21079525-21079544 Msa1144720:intron 45.0%
AATCATGTTACCATCAGGGG+CGG + chr7_4:21079679-21079698 None:intergenic 45.0%
! TCCCCCTAGTTCTTAATGTG+CGG - chr7_4:21079802-21079821 Msa1144720:intron 45.0%
ACCGCACATTAAGAACTAGG+GGG + chr7_4:21079806-21079825 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr7_4:21080064-21080083 Msa1144720:intron 45.0%
TCCGTACCATACAACATTGC+CGG + chr7_4:21080068-21080087 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr7_4:21080072-21080091 Msa1144720:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr7_4:21080073-21080092 Msa1144720:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - chr7_4:21080120-21080139 Msa1144720:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr7_4:21080190-21080209 Msa1144720:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr7_4:21080191-21080210 Msa1144720:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr7_4:21080192-21080211 Msa1144720:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr7_4:21080284-21080303 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr7_4:21080307-21080326 Msa1144720:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr7_4:21080317-21080336 Msa1144720:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr7_4:21080463-21080482 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr7_4:21080464-21080483 None:intergenic 45.0%
GGGGATGAAGTAGATCAATC+TGG - chr7_4:21080999-21081018 Msa1144720:intron 45.0%
AGAGGGAGAAGATGCGTATT+TGG - chr7_4:21081044-21081063 Msa1144720:intron 45.0%
AGGGAGGTAAAGTGTGTTGT+TGG - chr7_4:21081099-21081118 Msa1144720:intron 45.0%
! GGGAGGTAAAGTGTGTTGTT+GGG - chr7_4:21081100-21081119 Msa1144720:intron 45.0%
! GGAGGTAAAGTGTGTTGTTG+GGG - chr7_4:21081101-21081120 Msa1144720:intron 45.0%
! GAGGTAAAGTGTGTTGTTGG+GGG - chr7_4:21081102-21081121 Msa1144720:intron 45.0%
! AGGTAAAGTGTGTTGTTGGG+GGG - chr7_4:21081103-21081122 Msa1144720:intron 45.0%
AAAATTAGGGGGGCCAAAAC+TGG - chr7_4:21081159-21081178 Msa1144720:intron 45.0%
GATCTTTACTACGATCGGGA+GGG - chr7_4:21081227-21081246 Msa1144720:intron 45.0%
ATCTTTACTACGATCGGGAG+GGG - chr7_4:21081228-21081247 Msa1144720:intron 45.0%
CTTCTTAGAGTGGAGGAACA+AGG - chr7_4:21081515-21081534 Msa1144720:intron 45.0%
! TCAAAGATGGCGGCAAACAA+TGG + chr7_4:21081581-21081600 None:intergenic 45.0%
TTGTTTGCCGCCATCTTTGA+TGG - chr7_4:21081581-21081600 Msa1144720:intron 45.0%
ATAGCTTCACCTACTGTCCA+AGG - chr7_4:21081607-21081626 Msa1144720:intron 45.0%
TGCAATGCACATATAGGAGC+AGG - chr7_4:21081877-21081896 Msa1144720:intron 45.0%
GCAATGCACATATAGGAGCA+GGG - chr7_4:21081878-21081897 Msa1144720:intron 45.0%
!! TGAACCTAGGGTATTGTTGG+TGG - chr7_4:21081907-21081926 Msa1144720:intron 45.0%
GGCAACCAGGATTGTCTAAT+AGG + chr7_4:21082260-21082279 None:intergenic 45.0%
ATTCTATCAGTCTGGCAACC+AGG + chr7_4:21082273-21082292 None:intergenic 45.0%
TTGACCTGAGCTCGAAACTT+TGG - chr7_4:21082614-21082633 Msa1144720:intron 45.0%
AGTACCAAAGTTTCGAGCTC+AGG + chr7_4:21082621-21082640 None:intergenic 45.0%
TTCCTTAACCATTGCCCTGA+GGG + chr7_4:21082864-21082883 None:intergenic 45.0%
AATGCTAACCATTGCCCTTG+GGG + chr7_4:21083004-21083023 None:intergenic 45.0%
GAATGCTAACCATTGCCCTT+GGG + chr7_4:21083005-21083024 None:intergenic 45.0%
AGAATGCTAACCATTGCCCT+TGG + chr7_4:21083006-21083025 None:intergenic 45.0%
!! GCTTCTATTGCTTTTGGTGC+TGG - chr7_4:21083314-21083333 Msa1144720:intron 45.0%
!!! TATTGCTTTTGGTGCTGGAG+TGG - chr7_4:21083319-21083338 Msa1144720:intron 45.0%
!!! ATTGCTTTTGGTGCTGGAGT+GGG - chr7_4:21083320-21083339 Msa1144720:intron 45.0%
AAGACAAATCCCACCTGAGT+AGG + chr7_4:21083452-21083471 None:intergenic 45.0%
TCGTCTTAACCAATGCCCTA+AGG - chr7_4:21083635-21083654 Msa1144720:intron 45.0%
CGTCTTAACCAATGCCCTAA+GGG - chr7_4:21083636-21083655 Msa1144720:intron 45.0%
TGTGTGTGTGTGTGTGTGTA+GGG + chr7_4:21083677-21083696 None:intergenic 45.0%
TAGGGGATGTATCAAGTGAG+AGG - chr7_4:21083725-21083744 Msa1144720:intron 45.0%
TGAGTGTCAACAGCCTAAGT+TGG - chr7_4:21083890-21083909 Msa1144720:intron 45.0%
!! GCCTAAGTTGGTGTAGTAAC+TGG - chr7_4:21083902-21083921 Msa1144720:intron 45.0%
GCCAGTTACTACACCAACTT+AGG + chr7_4:21083906-21083925 None:intergenic 45.0%
AATGCTCTGTTTCACTGTCC+AGG + chr7_4:21084049-21084068 None:intergenic 45.0%
!! AAAAAAATAAAAATCTAAAT+TGG - chr7_4:21082479-21082498 Msa1144720:intron 5.0%
! TTTCATTGAGAGCACGCACG+CGG - chr7_4:21077801-21077820 Msa1144720:three_prime_UTR 50.0%
ATCAAGGCAGGCATCCCATT+TGG + chr7_4:21077966-21077985 None:intergenic 50.0%
AAGAGGAGTAAACGAAGCGG+CGG + chr7_4:21077997-21078016 None:intergenic 50.0%
! TCCTCTTTTGCCGGTGCTTT+CGG - chr7_4:21078010-21078029 Msa1144720:three_prime_UTR 50.0%
GAGAGAGAGAGAGTTGGAGA+AGG + chr7_4:21078060-21078079 None:intergenic 50.0%
TCTACGGAGAGAGAGAGAGT+TGG + chr7_4:21078066-21078085 None:intergenic 50.0%
GAGGACATGTCAAACACAGC+TGG + chr7_4:21079230-21079249 None:intergenic 50.0%
TGTTCTGGCAAACAGATCGC+AGG - chr7_4:21079333-21079352 Msa1144720:intron 50.0%
! GGTGAAGAGTCATTTGGGGT+CGG + chr7_4:21079365-21079384 None:intergenic 50.0%
! CGTATCTAGAATCTGGCCCA+AGG - chr7_4:21079523-21079542 Msa1144720:intron 50.0%
CTATCGGACATCAGTCAGAC+CGG - chr7_4:21080046-21080065 Msa1144720:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr7_4:21080059-21080078 Msa1144720:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr7_4:21080193-21080212 Msa1144720:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr7_4:21080198-21080217 None:intergenic 50.0%
GGTCGGCTACATGGATCAAA+TGG + chr7_4:21080442-21080461 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr7_4:21080459-21080478 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr7_4:21080465-21080484 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr7_4:21080462-21080481 Msa1144720:intron 50.0%
GGGTCTCAAATGGTTAGTGG+AGG - chr7_4:21080821-21080840 Msa1144720:intron 50.0%
! GGTAAAGTGTGTTGTTGGGG+GGG - chr7_4:21081104-21081123 Msa1144720:intron 50.0%
! GTAAAGTGTGTTGTTGGGGG+GGG - chr7_4:21081105-21081124 Msa1144720:intron 50.0%
! TAAAGTGTGTTGTTGGGGGG+GGG - chr7_4:21081106-21081125 Msa1144720:intron 50.0%
GGATCTTTACTACGATCGGG+AGG - chr7_4:21081226-21081245 Msa1144720:intron 50.0%
ATAGGAAGTCGGGTCAGTGT+TGG - chr7_4:21081766-21081785 Msa1144720:intron 50.0%
! GTTGGTGGAGGATAGTCCAT+AGG - chr7_4:21081784-21081803 Msa1144720:intron 50.0%
GCAAGTCTATCATCGCCAGT+TGG + chr7_4:21081860-21081879 None:intergenic 50.0%
AGCAGGGTTGTCTTGAACCT+AGG - chr7_4:21081894-21081913 Msa1144720:intron 50.0%
GCAGGGTTGTCTTGAACCTA+GGG - chr7_4:21081895-21081914 Msa1144720:intron 50.0%
CACACCACCAACAATACCCT+AGG + chr7_4:21081914-21081933 None:intergenic 50.0%
AACCAAAGACGTGGGTGTCA+AGG - chr7_4:21082175-21082194 Msa1144720:intron 50.0%
TTCCTTGACACCCACGTCTT+TGG + chr7_4:21082180-21082199 None:intergenic 50.0%
TTCGAGCTCAGGTCAAAGTC+AGG + chr7_4:21082610-21082629 None:intergenic 50.0%
TCTTGCTAACCATTGCCCTC+AGG - chr7_4:21082846-21082865 Msa1144720:intron 50.0%
CTTGCTAACCATTGCCCTCA+GGG - chr7_4:21082847-21082866 Msa1144720:intron 50.0%
CTTCCTTAACCATTGCCCTG+AGG + chr7_4:21082865-21082884 None:intergenic 50.0%
! CGCTGGGCTTCTATTGCTTT+TGG - chr7_4:21083308-21083327 Msa1144720:intron 50.0%
!! TTTGGTGCTGGAGTGGGAAT+AGG - chr7_4:21083326-21083345 Msa1144720:intron 50.0%
TTCGGTTGTGCAAGCTTTGC+TGG + chr7_4:21083392-21083411 None:intergenic 50.0%
AGCAAAGCTTGCACAACCGA+AGG - chr7_4:21083391-21083410 Msa1144720:intron 50.0%
TGTGCTACCTCTGAGTCCTT+CGG + chr7_4:21083410-21083429 None:intergenic 50.0%
CTCAGAGGTAGCACAACCTA+AGG - chr7_4:21083415-21083434 Msa1144720:intron 50.0%
!! AAAGAGTGCCCTTAGGGCAT+TGG + chr7_4:21083647-21083666 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+AGG + chr7_4:21083678-21083697 None:intergenic 50.0%
TGTTTCACTGTCCAGGAACC+AGG + chr7_4:21084042-21084061 None:intergenic 50.0%
TGTGATTTCTCGGGTCGGGT+CGG + chr7_4:21077777-21077796 None:intergenic 55.0%
TCCAACTCGTTCCGTTCCGA+TGG - chr7_4:21077895-21077914 Msa1144720:three_prime_UTR 55.0%
CCAACTCGTTCCGTTCCGAT+GGG - chr7_4:21077896-21077915 Msa1144720:three_prime_UTR 55.0%
! TCTTTTGCCGGTGCTTTCGG+CGG - chr7_4:21078013-21078032 Msa1144720:three_prime_UTR 55.0%
GGCAAACAGATCGCAGGTCT+TGG - chr7_4:21079339-21079358 Msa1144720:intron 55.0%
!! CGGAGATAGCCCTTTTGAGG+GGG + chr7_4:21079659-21079678 None:intergenic 55.0%
! GCGGAGATAGCCCTTTTGAG+GGG + chr7_4:21079660-21079679 None:intergenic 55.0%
! GGCGGAGATAGCCCTTTTGA+GGG + chr7_4:21079661-21079680 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr7_4:21080076-21080095 Msa1144720:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr7_4:21080451-21080470 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr7_4:21080450-21080469 Msa1144720:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr7_4:21080451-21080470 Msa1144720:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr7_4:21080457-21080476 Msa1144720:intron 55.0%
TGGGGGACTGCGAAATCAGA+AGG - chr7_4:21081079-21081098 Msa1144720:intron 55.0%
GGGGGACTGCGAAATCAGAA+GGG - chr7_4:21081080-21081099 Msa1144720:intron 55.0%
GGACTGCGAAATCAGAAGGG+AGG - chr7_4:21081083-21081102 Msa1144720:intron 55.0%
! AAAGTGTGTTGTTGGGGGGG+GGG - chr7_4:21081107-21081126 Msa1144720:intron 55.0%
CTGCTAGCCCTCCAAATCCT+AGG + chr7_4:21081315-21081334 None:intergenic 55.0%
!! AGTGGAGGCATAGGTGCTGA+AGG - chr7_4:21081829-21081848 Msa1144720:intron 55.0%
AACCATTGCCCTCAGGGCAA+TGG - chr7_4:21082853-21082872 Msa1144720:intron 55.0%
AACCATTGCCCTGAGGGCAA+TGG + chr7_4:21082858-21082877 None:intergenic 55.0%
TGCCCTCAGGGCAATGGTTA+AGG - chr7_4:21082859-21082878 Msa1144720:intron 55.0%
ATCCAATGCCCCAAGGGCAA+TGG - chr7_4:21082993-21083012 Msa1144720:intron 55.0%
AACCATTGCCCTTGGGGCAT+TGG + chr7_4:21082998-21083017 None:intergenic 55.0%
ATAGAAGCCCAGCGAGTCTG+AGG + chr7_4:21083302-21083321 None:intergenic 55.0%
TGCACAACCGAAGGACTCAG+AGG - chr7_4:21083400-21083419 Msa1144720:intron 55.0%
AGCACAACCTAAGGCCTCAG+AGG - chr7_4:21083424-21083443 Msa1144720:intron 55.0%
TCAGAGGCTCCTACTCAGGT+GGG - chr7_4:21083440-21083459 Msa1144720:intron 55.0%
GTGATTTCTCGGGTCGGGTC+GGG + chr7_4:21077776-21077795 None:intergenic 60.0%
CCCATCGGAACGGAACGAGT+TGG + chr7_4:21077899-21077918 None:intergenic 60.0%
GGAGTAAACGAAGCGGCGGA+CGG + chr7_4:21077993-21078012 None:intergenic 60.0%
!! GCCGAAAGCACCGGCAAAAG+AGG + chr7_4:21078014-21078033 None:intergenic 60.0%
! GGGCGGAGATAGCCCTTTTG+AGG + chr7_4:21079662-21079681 None:intergenic 60.0%
CGGAGATGAGGATGTTGCGC+TGG - chr7_4:21080132-21080151 Msa1144720:intron 60.0%
AGGATGTTGCGCTGGACGAG+TGG - chr7_4:21080140-21080159 Msa1144720:intron 60.0%
! AAGTGTGTTGTTGGGGGGGG+GGG - chr7_4:21081108-21081127 Msa1144720:intron 60.0%
! GGAAGTCGGGTCAGTGTTGG+TGG - chr7_4:21081769-21081788 Msa1144720:intron 60.0%
!! AGTCGGGTCAGTGTTGGTGG+AGG - chr7_4:21081772-21081791 Msa1144720:intron 60.0%
!! GGAGGCATAGGTGCTGAAGG+TGG - chr7_4:21081832-21081851 Msa1144720:intron 60.0%
GTGCTGAAGGTGGAGCCAAC+TGG - chr7_4:21081842-21081861 Msa1144720:intron 60.0%
TCCCCTCATCCAATGCCCCA+AGG - chr7_4:21082986-21083005 Msa1144720:intron 60.0%
!! CCCTTGGGGCATTGGATGAG+GGG + chr7_4:21082990-21083009 None:intergenic 60.0%
CCCCTCATCCAATGCCCCAA+GGG - chr7_4:21082987-21083006 Msa1144720:intron 60.0%
!! GCCCTTGGGGCATTGGATGA+GGG + chr7_4:21082991-21083010 None:intergenic 60.0%
!! TGCCCTTGGGGCATTGGATG+AGG + chr7_4:21082992-21083011 None:intergenic 60.0%
TAGGGAGTCCTCAGACTCGC+TGG - chr7_4:21083291-21083310 Msa1144720:intron 60.0%
AGGGAGTCCTCAGACTCGCT+GGG - chr7_4:21083292-21083311 Msa1144720:intron 60.0%
!! GTAGGAGCCTCTGAGGCCTT+AGG + chr7_4:21083434-21083453 None:intergenic 60.0%
CACCTGAGTAGGAGCCTCTG+AGG + chr7_4:21083441-21083460 None:intergenic 60.0%
CTCAGAGGCTCCTACTCAGG+TGG - chr7_4:21083439-21083458 Msa1144720:intron 60.0%
GCGGACGGTGAGATCAAGGC+AGG + chr7_4:21077978-21077997 None:intergenic 65.0%
AGCGGCGGACGGTGAGATCA+AGG + chr7_4:21077982-21078001 None:intergenic 65.0%
! GAGGAGACCGCCGAAAGCAC+CGG + chr7_4:21078023-21078042 None:intergenic 65.0%
AGGGCTATCTCCGCCCCTGA+TGG - chr7_4:21079666-21079685 Msa1144720:intron 65.0%
! AGTGTGTTGTTGGGGGGGGG+GGG - chr7_4:21081109-21081128 Msa1144720:intron 65.0%
GGCCTCAGAGGCTCCTACTC+AGG - chr7_4:21083436-21083455 Msa1144720:intron 65.0%
! GTGTGTTGTTGGGGGGGGGG+GGG - chr7_4:21081110-21081129 Msa1144720:intron 70.0%
! TGTGTTGTTGGGGGGGGGGG+GGG - chr7_4:21081111-21081130 Msa1144720:intron 70.0%
!! GTGGGCTGGGCGAGGCCTTG+TGG - chr7_4:21077739-21077758 Msa1144720:three_prime_UTR 75.0%
! GTGTTGTTGGGGGGGGGGGG+GGG - chr7_4:21081112-21081131 Msa1144720:intron 75.0%
TGTTGTTGGGGGGGGGGGGG+GGG - chr7_4:21081113-21081132 Msa1144720:intron 75.0%
! GTTGTTGGGGGGGGGGGGGG+GGG - chr7_4:21081114-21081133 Msa1144720:intron 80.0%
! TTGTTGGGGGGGGGGGGGGG+GGG - chr7_4:21081115-21081134 Msa1144720:intron 80.0%
! TGTTGGGGGGGGGGGGGGGG+GGG - chr7_4:21081116-21081135 Msa1144720:intron 85.0%
! GTTGGGGGGGGGGGGGGGGG+GGG - chr7_4:21081117-21081136 Msa1144720:intron 90.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr7_4:21081118-21081137 Msa1144720:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr7_4:21081119-21081138 Msa1144720:intron 95.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 21077733 21084452 21077733 ID=Msa1144720;Name=Msa1144720
chr7_4 mRNA 21077733 21084452 21077733 ID=Msa1144720-mRNA-1;Parent=Msa1144720;Name=Msa1144720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=181|0.5|0.66|1|1|1|3|432|94
chr7_4 exon 21077733 21078185 21077733 ID=Msa1144720-mRNA-1:exon:5049;Parent=Msa1144720-mRNA-1
chr7_4 exon 21078764 21078891 21078764 ID=Msa1144720-mRNA-1:exon:5048;Parent=Msa1144720-mRNA-1
chr7_4 exon 21084136 21084452 21084136 ID=Msa1144720-mRNA-1:exon:5047;Parent=Msa1144720-mRNA-1
chr7_4 five_prime_UTR 21084272 21084452 21084272 ID=Msa1144720-mRNA-1:five_prime_utr;Parent=Msa1144720-mRNA-1
chr7_4 CDS 21084136 21084271 21084136 ID=Msa1144720-mRNA-1:cds;Parent=Msa1144720-mRNA-1
chr7_4 CDS 21078764 21078891 21078764 ID=Msa1144720-mRNA-1:cds;Parent=Msa1144720-mRNA-1
chr7_4 CDS 21078165 21078185 21078165 ID=Msa1144720-mRNA-1:cds;Parent=Msa1144720-mRNA-1
chr7_4 three_prime_UTR 21077733 21078164 21077733 ID=Msa1144720-mRNA-1:three_prime_utr;Parent=Msa1144720-mRNA-1
Gene Sequence

>Msa1144720

ATGGGTGAAAATAAAGAACAATTAATTCCTCAAAAGTATGACGTCGATGCCAAATGGGATGCCTGCCTTGATCTCACCGTCCGCCGCTTCGTTTACTCCTCTTTTGCCGGTGCTTTCGGCGGTCTCCTCCTTTTCAGGAGTCCTCAGACTCGCTGGGCTTCTATTGCTTTTGGTGCTGGAGTGGGAATAGGATCTGCATACACAGAATGTTCTCGTCTGTTTGATGGATCTCCAGCAAAGCTTGCACAACCGAAGGACTCAGAGATTGTGCAGGATTCTGAATAG

Protein sequence

>Msa1144720

MGENKEQLIPQKYDVDAKWDACLDLTVRRFVYSSFAGAFGGLLLFRSPQTRWASIAFGAGVGIGSAYTECSRLFDGSPAKLAQPKDSEIVQDSE*