AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971850 MtrunA17_Chr6g0450811 98.421 380 6 0 1 380 1 380 0.0 775
Msa0971850 MtrunA17_Chr6g0450811 92.938 354 25 0 376 729 33 386 0.0 697
Msa0971850 MtrunA17_Chr6g0450821 92.938 354 6 1 376 729 3 337 0.0 671
Msa0971850 MtrunA17_Chr6g0450821 84.857 350 34 1 31 380 1 331 0.0 612
Msa0971850 MtrunA17_Chr4g0000511 30.081 246 168 3 122 367 152 393 9.80e-26 112
Msa0971850 MtrunA17_Chr4g0000511 28.455 246 172 3 465 710 152 393 5.44e-24 107
Msa0971850 MtrunA17_Chr1g0208141 31.600 250 159 5 122 367 119 360 7.44e-24 106
Msa0971850 MtrunA17_Chr1g0208141 29.719 249 165 4 465 710 119 360 3.28e-22 101
Msa0971850 MtrunA17_Chr4g0004711 28.185 259 169 5 457 710 60 306 1.59e-23 102
Msa0971850 MtrunA17_Chr4g0004711 27.799 259 172 4 113 367 59 306 2.11e-23 101
Msa0971850 MtrunA17_Chr3g0077771 30.421 309 176 11 417 703 75 366 1.77e-22 100
Msa0971850 MtrunA17_Chr3g0077771 30.451 266 153 7 116 360 112 366 3.95e-22 99.4
Msa0971850 MtrunA17_Chr4g0004721 25.623 281 192 5 434 710 40 307 4.71e-21 94.7
Msa0971850 MtrunA17_Chr4g0004721 25.979 281 191 5 91 367 40 307 8.02e-21 94.0
Msa0971850 MtrunA17_Chr8g0351111 27.413 259 173 5 454 707 65 313 8.97e-21 94.4
Msa0971850 MtrunA17_Chr8g0351111 26.641 259 175 4 111 364 65 313 3.87e-20 92.4
Msa0971850 MtrunA17_Chr4g0004681 26.953 256 175 4 113 367 59 303 6.23e-20 91.3
Msa0971850 MtrunA17_Chr4g0004681 26.667 255 175 4 457 710 60 303 1.05e-19 90.9
Msa0971850 MtrunA17_Chr8g0351121 26.054 261 169 7 111 364 102 345 3.61e-17 84.0
Msa0971850 MtrunA17_Chr8g0351121 27.200 250 158 8 465 707 113 345 7.78e-17 82.8
Msa0971850 MtrunA17_Chr8g0351141 23.492 315 199 9 76 384 44 322 1.71e-16 81.3
Msa0971850 MtrunA17_Chr8g0351141 25.517 290 179 9 438 707 40 312 2.28e-16 80.9
Msa0971850 MtrunA17_Chr2g0331641 27.165 254 175 6 459 710 62 307 1.29e-14 75.5
Msa0971850 MtrunA17_Chr2g0331641 26.848 257 178 6 113 367 59 307 1.48e-14 75.5
Msa0971850 MtrunA17_Chr4g0004741 29.921 254 167 6 459 710 62 306 2.90e-13 71.6
Msa0971850 MtrunA17_Chr4g0004741 29.644 253 169 5 116 367 62 306 5.16e-13 70.9
Msa0971850 MtrunA17_Chr1g0210971 26.809 235 151 6 472 688 94 325 8.55e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971850 AT5G14780.2 84.181 354 56 0 376 729 17 370 0.0 601
Msa0971850 AT5G14780.2 82.759 348 60 0 33 380 17 364 0.0 583
Msa0971850 AT5G14780.1 84.181 354 56 0 376 729 31 384 0.0 600
Msa0971850 AT5G14780.1 78.740 381 77 2 1 380 1 378 0.0 587
Msa0971850 AT5G14780.3 84.181 354 56 0 376 729 5 358 0.0 600
Msa0971850 AT5G14780.3 82.759 348 60 0 33 380 5 352 0.0 583
Msa0971850 AT1G17745.1 29.286 280 189 6 90 367 115 387 6.16e-26 114
Msa0971850 AT1G17745.1 29.070 258 178 4 454 710 134 387 1.05e-24 110
Msa0971850 AT4G34200.1 30.769 247 165 4 122 367 125 366 1.63e-24 109
Msa0971850 AT4G34200.1 28.862 246 171 3 465 710 125 366 7.75e-23 103
Msa0971850 AT1G72190.1 30.932 236 154 3 116 345 110 342 2.03e-23 103
Msa0971850 AT1G72190.1 27.817 284 189 6 411 688 69 342 1.19e-22 100
Msa0971850 AT1G17745.2 27.778 306 187 8 90 367 115 414 4.70e-23 105
Msa0971850 AT1G17745.2 27.465 284 176 6 454 710 134 414 7.70e-22 101
Msa0971850 AT3G19480.1 29.150 247 169 4 122 367 110 351 1.13e-22 103
Msa0971850 AT3G19480.1 27.642 246 174 3 465 710 110 351 2.81e-21 99.0
Msa0971850 AT1G79870.1 28.295 258 176 5 113 369 59 308 7.16e-21 94.7
Msa0971850 AT1G79870.1 28.235 255 174 5 459 712 62 308 7.64e-21 94.7
Msa0971850 AT1G12550.1 25.106 235 170 2 454 688 64 292 1.11e-19 91.3
Msa0971850 AT1G12550.1 25.564 266 188 5 81 345 36 292 1.81e-19 90.5
Msa0971850 AT2G45630.2 27.500 240 167 3 109 347 78 311 8.17e-19 89.0
Msa0971850 AT2G45630.2 28.750 240 164 4 452 690 78 311 1.02e-18 88.6
Msa0971850 AT1G79870.2 25.969 258 163 5 113 369 59 289 3.64e-15 77.4
Msa0971850 AT1G79870.2 25.882 255 161 5 459 712 62 289 3.68e-15 77.4

Find 191 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACATCCAACAAAAT+TGG 0.150781 6_4:-3961978 None:intergenic
TATGCTTGAGAGGCACTTTA+AGG 0.176399 6_4:+3963916 Msa0971850:CDS
TATGCTTGAGAGGCACTTTA+AGG 0.176399 6_4:+3968372 Msa0971850:CDS
AATATATGTAAAATTCTTAT+TGG 0.179143 6_4:-3959776 None:intergenic
ATATAAAAGGTTACAGTTAA+AGG 0.184451 6_4:-3967088 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.191495 6_4:-3967132 None:intergenic
TCAACACATCCAACAAAATT+AGG 0.193356 6_4:-3966505 None:intergenic
CCAATTTCTTTCTCCAATTC+AGG 0.196911 6_4:-3962700 None:intergenic
CAATGCTCGTGGGGCGATTA+TGG 0.210159 6_4:+3967408 Msa0971850:CDS
ATATAAAAGGTTACAGTTAA+AGG 0.223160 6_4:-3962656 None:intergenic
GCTATGACTCCTCATATTTC+TGG 0.232371 6_4:+3963279 Msa0971850:CDS
GCGATGACTCCTCATATTTC+TGG 0.233071 6_4:+3967707 Msa0971850:CDS
CAATGCTCGTGGAGCACTTA+TGG 0.246792 6_4:+3963049 Msa0971850:CDS
TAAATTATACCTTGTCTTAT+CGG 0.247196 6_4:-3967226 None:intergenic
CTCAATGCTGCGGCTGCTGC+TGG 0.282556 6_4:+3962406 Msa0971850:CDS
TAGCGCCATGGATGATCTTT+TGG 0.296464 6_4:-3963243 None:intergenic
TAGCGCCATGGATGATCTTT+TGG 0.296464 6_4:-3967671 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.310313 6_4:+3967132 Msa0971850:CDS
CTCAACGCCGCGGCTGCTGC+TGG 0.311561 6_4:+3966838 Msa0971850:CDS
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 6_4:-3962642 None:intergenic
AGTTAAAGGGTTTCAGCCTT+TGG 0.316924 6_4:-3967074 None:intergenic
CCTGAATTGGAGAAAGAAAT+TGG 0.319944 6_4:+3962700 Msa0971850:CDS
TATAAAAGGTTACAGTTAAA+GGG 0.334347 6_4:-3967087 None:intergenic
TTCACAATGTAATGCTGTTC+AGG 0.337030 6_4:-3968406 None:intergenic
GGTGAAATGGTGTGGATATC+AGG 0.337349 6_4:-3962297 None:intergenic
TTCACAATGTAGTTCTGTTC+AGG 0.343342 6_4:-3963950 None:intergenic
CGCTTTCTTAATTCTTTCCT+CGG 0.344856 6_4:-3966764 None:intergenic
ACTTAAGATGGCGCCTGAAT+TGG 0.345074 6_4:+3962687 Msa0971850:CDS
TAAGTCTATCGTGATATAAA+AGG 0.348710 6_4:-3962669 None:intergenic
TAAGTCTATCATGATATAAA+AGG 0.348710 6_4:-3967101 None:intergenic
ACGGTCGGTGCTGGACGAAT+TGG 0.352979 6_4:+3962607 Msa0971850:CDS
ATATATGTAAAATTCTTATT+GGG 0.353999 6_4:-3959775 None:intergenic
GGTTACAAGCAGGCTGTTGC+CGG 0.355403 6_4:+3966955 Msa0971850:CDS
GACAAAGAAGGACTCAATTC+TGG 0.356342 6_4:+3962061 Msa0971850:CDS
TATAAAAGGTTACAGTTAAA+GGG 0.356684 6_4:-3962655 None:intergenic
TGTTCTAGTGGACACGTTGC+AGG 0.363087 6_4:+3963095 Msa0971850:CDS
GACAAAGAAGGACCTGATTC+TGG 0.363375 6_4:+3966589 Msa0971850:CDS
TAGGTTACAGTGGTGATGTT+TGG 0.375068 6_4:+3963205 Msa0971850:intron
TAGGTTACAGTGGTGATGTT+TGG 0.375068 6_4:+3967633 Msa0971850:intron
ATCGGTATTGGCTTGCCAAT+TGG 0.378591 6_4:-3968435 None:intergenic
AGCAAGAAAGGGAGAGGAGT+TGG 0.382551 6_4:+3959819 Msa0971850:five_prime_UTR
GATACTACATTCATCGGTAT+TGG 0.383983 6_4:-3968447 None:intergenic
CTTTCCTCGGTGACATAGGC+AGG 0.386770 6_4:-3966751 None:intergenic
TCAAAATTCTAACCAGAATC+AGG 0.393287 6_4:-3966601 None:intergenic
TCAACACATCCAACAAAATT+GGG 0.405718 6_4:-3961977 None:intergenic
CGTCTTTCCTTCAAGATCAT+AGG 0.406591 6_4:-3967010 None:intergenic
ACTTAAGATGGAGCCTGAAT+TGG 0.406632 6_4:+3967119 Msa0971850:CDS
CATTGTGAAGCAGGGCCAAT+TGG 0.415484 6_4:+3968420 Msa0971850:CDS
GGTGAAATGGTGTAGATATC+AGG 0.417800 6_4:-3966729 None:intergenic
TGTCTTTCCTTCAAGATCAT+AGG 0.421953 6_4:-3962578 None:intergenic
ACCGGAGAATGGAATGTTGC+TGG 0.422186 6_4:+3962541 Msa0971850:CDS
TCCAACAAAATTGGGATTCA+AGG 0.426930 6_4:-3961969 None:intergenic
CGGTCGGTGCTGGACGAATT+GGG 0.430059 6_4:+3962608 Msa0971850:CDS
ATATCATGATAGACTTAAGA+TGG 0.430838 6_4:+3967107 Msa0971850:CDS
ATAAACTACCTGTGCATCAA+TGG 0.432079 6_4:-3963307 None:intergenic
GGTTACCATCAGGCTATTAC+CGG 0.432378 6_4:+3962523 Msa0971850:CDS
ACAGTTGGTGCTGGACGAAT+CGG 0.436838 6_4:+3967039 Msa0971850:CDS
GGAGGAAAGAAGAAAATTGT+AGG 0.439790 6_4:+3966445 Msa0971850:CDS
CACCTTCTTCCATCATCACC+AGG 0.440843 6_4:+3960096 Msa0971850:CDS
AGCAGGCTGTTGCCGGAGAA+TGG 0.441500 6_4:+3966962 Msa0971850:CDS
CTGCTTCTAACCGCCGGCAT+TGG 0.441881 6_4:+3962367 Msa0971850:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 6_4:+3962571 Msa0971850:CDS
CATAGAGCCTATGATCTTGA+AGG 0.442532 6_4:+3967003 Msa0971850:CDS
TGAGGAGTCATCGCATGGTT+TGG 0.445585 6_4:-3967698 None:intergenic
GGAGAGGAGTTGGAAGGAAA+GGG 0.449862 6_4:+3959829 Msa0971850:five_prime_UTR
GGATGTGTTGAAGGAGCATT+AGG 0.450524 6_4:+3961989 Msa0971850:CDS
GGATGTGTTGAAGGAGCATT+AGG 0.450524 6_4:+3966517 Msa0971850:CDS
TGTACTAGTGGACACATTGC+AGG 0.452738 6_4:+3967454 Msa0971850:CDS
GGGAGAGGAGTTGGAAGGAA+AGG 0.454236 6_4:+3959828 Msa0971850:five_prime_UTR
ATGCTTGAGAGGCACTTTAA+GGG 0.454740 6_4:+3963917 Msa0971850:CDS
ATGCTTGAGAGGCACTTTAA+GGG 0.454740 6_4:+3968373 Msa0971850:CDS
ATAAACAACCTGTGCATCAA+TGG 0.455572 6_4:-3967735 None:intergenic
TGAGGAGTCATAGCATGATT+AGG 0.459588 6_4:-3963270 None:intergenic
CTTGTGAGGAATTTCTTGCC+TGG 0.460979 6_4:+3962502 Msa0971850:CDS
TTTATGTCATTAAGTTGAAT+CGG 0.462170 6_4:-3959720 None:intergenic
GGTGGAAAGAAGAAGATTGT+AGG 0.462288 6_4:+3961917 Msa0971850:CDS
GATATCAGGACATGCAGATC+AGG 0.463662 6_4:-3966715 None:intergenic
CTTTCCGCAGTGACATAGGC+AGG 0.464618 6_4:-3962319 None:intergenic
TGTTGTTGAGAATAGGCCTC+TGG 0.466148 6_4:+3961896 Msa0971850:intron
CTTTGAAGAAGCAGTGATCA+AGG 0.467599 6_4:-3960057 None:intergenic
ACAGTTGGAACGGTCGGTGC+TGG 0.468606 6_4:+3962598 Msa0971850:CDS
ATATCACGATAGACTTAAGA+TGG 0.470085 6_4:+3962675 Msa0971850:CDS
GTGACATAGGCAGGGTGAAA+TGG 0.470645 6_4:-3962310 None:intergenic
GTGACATAGGCAGGGTGAAA+TGG 0.470645 6_4:-3966742 None:intergenic
GTTCAGTTACGTTATGCTGC+TGG 0.471187 6_4:+3963884 Msa0971850:intron
TTTCTTGCCTGGTTACCATC+AGG 0.472008 6_4:+3962513 Msa0971850:CDS
CTCGTGAGGAATTTCTTGCC+TGG 0.476350 6_4:+3966934 Msa0971850:CDS
GCCGGAGAATGGAATGTTGC+TGG 0.480317 6_4:+3966973 Msa0971850:CDS
TATTATTGAGAATAGGCCTC+TGG 0.487053 6_4:+3966424 Msa0971850:intron
GTTCAGTTACGTTATGCTGC+TGG 0.487635 6_4:+3968340 Msa0971850:intron
ACAGCATTACATTGTGAAGC+AGG 0.492555 6_4:+3968411 Msa0971850:CDS
ATGAAGGTCCCTGGTGATGA+TGG 0.493616 6_4:-3960105 None:intergenic
ATCAGGCTATTACCGGAGAA+TGG 0.493947 6_4:+3962530 Msa0971850:CDS
GCCAGCAACATTCCATTCTC+CGG 0.495643 6_4:-3962542 None:intergenic
GTTGCTGATGCTTGTTCTAG+TGG 0.497709 6_4:+3963083 Msa0971850:CDS
ACATCCAACAAAATTAGGAT+TGG 0.500600 6_4:-3966500 None:intergenic
TGGAACTACCATTGATGCAC+AGG 0.501814 6_4:+3967727 Msa0971850:CDS
ACCAGCAACATTCCATTCTC+CGG 0.501972 6_4:-3966974 None:intergenic
ACCTTGTCTTATCGGTGAGA+GGG 0.507302 6_4:-3967218 None:intergenic
AATTCTTTCCTCGGTGACAT+AGG 0.513371 6_4:-3966755 None:intergenic
AGAATTGCTAAGTTGAAGAA+AGG 0.514648 6_4:+3963011 Msa0971850:CDS
AGAAATTGGAGCTCAGTTTG+AGG 0.516756 6_4:+3962714 Msa0971850:CDS
AATTCTTTCCGCAGTGACAT+AGG 0.516858 6_4:-3962323 None:intergenic
GCAACAGCCTGCTTGTAACC+AGG 0.517533 6_4:-3966952 None:intergenic
GGAAAGACGGTTGGAACAGT+TGG 0.521323 6_4:+3967024 Msa0971850:CDS
TTGATTGTTAACAATGCTCG+TGG 0.521418 6_4:+3967397 Msa0971850:CDS
TTTCTTGCCTGGTTACAAGC+AGG 0.523136 6_4:+3966945 Msa0971850:CDS
GATATCAGGACATTGAGATC+AGG 0.531388 6_4:-3962283 None:intergenic
CAGTTGGTGCTGGACGAATC+GGG 0.533028 6_4:+3967040 Msa0971850:CDS
TGGAACCACCATTGATGCAC+AGG 0.536965 6_4:+3963299 Msa0971850:CDS
TTAGAGCTGCTTCTAACCGC+CGG 0.540077 6_4:+3962361 Msa0971850:CDS
CACAGGAAGCAACGTAGTAT+CGG 0.541220 6_4:+3966879 Msa0971850:CDS
TGAGAGGCACTTTAAGGGTG+AGG 0.541517 6_4:+3968378 Msa0971850:CDS
TGATTGTTAACAATGCTCGT+GGG 0.541593 6_4:+3967398 Msa0971850:CDS
AGAATCGCTAAGTTGAAGAA+AGG 0.545413 6_4:+3967370 Msa0971850:CDS
TAACTTAACCTGAGTGAGGA+AGG 0.546381 6_4:-3959857 None:intergenic
ATAACAACTATGTCGCACTT+TGG 0.549637 6_4:-3967189 None:intergenic
TTAACTGTCGCAGAGGTCAC+AGG 0.552581 6_4:+3962430 Msa0971850:CDS
ACGGTTGGAACAGTTGGTGC+TGG 0.553144 6_4:+3967030 Msa0971850:CDS
AGAAATTGGAGCTAAGTTTG+AGG 0.553645 6_4:+3967146 Msa0971850:CDS
GATCTTGAAGGAAAGACAGT+TGG 0.556559 6_4:+3962583 Msa0971850:CDS
GATCTTGAAGGAAAGACGGT+TGG 0.556559 6_4:+3967015 Msa0971850:CDS
AGAAAGGGAGAGGAGTTGGA+AGG 0.559805 6_4:+3959823 Msa0971850:five_prime_UTR
TACCTTGTCTTATCGGTGAG+AGG 0.560917 6_4:-3967219 None:intergenic
AATGTGATCAGAACCAATGC+CGG 0.563596 6_4:-3962380 None:intergenic
TTAACCGTCGCAGAGGTCAC+AGG 0.565278 6_4:+3966862 Msa0971850:CDS
GTTGCTGATGCTTGTACTAG+TGG 0.565800 6_4:+3967442 Msa0971850:CDS
ATTAGGTATACGCGAGTGGT+TGG 0.567034 6_4:+3962006 Msa0971850:CDS
AATGTGATCAGAACCAATGC+CGG 0.567247 6_4:-3966812 None:intergenic
ACTTTGGTAGCATTGTATCA+AGG 0.567924 6_4:-3967173 None:intergenic
CAGCTCCAAAAGATCATCCA+TGG 0.568481 6_4:+3963238 Msa0971850:CDS
CAGCTCCAAAAGATCATCCA+TGG 0.568481 6_4:+3967666 Msa0971850:CDS
TGAGCTTACATGAAGGTCCC+TGG 0.575307 6_4:-3960114 None:intergenic
TACCTTGTCTTATCAGTGAG+AGG 0.576761 6_4:-3962787 None:intergenic
ATTGTCACTGATGACAAAGA+AGG 0.582437 6_4:+3962049 Msa0971850:CDS
GGAAAGACAGTTGGAACGGT+CGG 0.583686 6_4:+3962592 Msa0971850:CDS
GGTTAAACCAGCAGCAGCCG+CGG 0.590487 6_4:-3966845 None:intergenic
GTAATAGCCTGATGGTAACC+AGG 0.591423 6_4:-3962520 None:intergenic
TGAGAATTCTCATTCTTGTG+AGG 0.592186 6_4:+3962488 Msa0971850:CDS
GGGTAAAGCCTTCCTCACTC+AGG 0.595514 6_4:+3959849 Msa0971850:five_prime_UTR
TTTCATCTTATAGGTTACAG+TGG 0.595880 6_4:+3967623 Msa0971850:intron
ATTGTAGGTGTGTTCTACAA+AGG 0.596743 6_4:+3966460 Msa0971850:CDS
AATCTTCTTCTTTCCACCAG+AGG 0.597365 6_4:-3961912 None:intergenic
ATTGTCACAGATGACAAAGA+AGG 0.604616 6_4:+3966577 Msa0971850:CDS
CAACGTAGTATCGGTTGCTG+AGG 0.609487 6_4:+3966888 Msa0971850:CDS
GCTTCCTGTGACCTCTGCGA+CGG 0.611055 6_4:-3966866 None:intergenic
TGATTAGGCATGTAGCGCCA+TGG 0.614868 6_4:-3963255 None:intergenic
TGAGAATTCTCATTCTCGTG+AGG 0.615649 6_4:+3966920 Msa0971850:CDS
CTATGATCTTGAAGGAAAGA+CGG 0.616356 6_4:+3967011 Msa0971850:CDS
CGCGAGTGGCTTGAATCACA+AGG 0.618094 6_4:+3966544 Msa0971850:CDS
CAACACTGTGTCGGTTGCTG+AGG 0.618658 6_4:+3962456 Msa0971850:CDS
CGCGAGTGGTTGGAATCACA+AGG 0.620030 6_4:+3962016 Msa0971850:CDS
CCTTGTCTTATCGGTGAGAG+GGG 0.620981 6_4:-3967217 None:intergenic
GAGCATTAGGTATTCGCGAG+TGG 0.621632 6_4:+3966530 Msa0971850:CDS
ATGGTAGTTCCAGAAATATG+AGG 0.623567 6_4:-3967716 None:intergenic
GAGTCAAAGATATGCTTGAG+AGG 0.624367 6_4:+3963906 Msa0971850:CDS
GAGTCAAAGATATGCTTGAG+AGG 0.624367 6_4:+3968362 Msa0971850:CDS
TATTGAGAATAGGCCTCTGG+AGG 0.626934 6_4:+3966427 Msa0971850:intron
CCCCTCTCACCGATAAGACA+AGG 0.628167 6_4:+3967217 Msa0971850:CDS
CAGCATTACATTGTGAAGCA+GGG 0.632429 6_4:+3968412 Msa0971850:CDS
AACTACCTGTGCATCAATGG+TGG 0.632641 6_4:-3963304 None:intergenic
TGGTTTGGCATGTAGCGCCA+TGG 0.634567 6_4:-3967683 None:intergenic
ATTGTAGGTGTGTTCTACAA+AGG 0.635031 6_4:+3961932 Msa0971850:CDS
GATTGTTAACAATGCTCGTG+GGG 0.635440 6_4:+3967399 Msa0971850:CDS
CACAGGAAGCAACACTGTGT+CGG 0.636460 6_4:+3962447 Msa0971850:CDS
TTTCCTCGGTGACATAGGCA+GGG 0.636732 6_4:-3966750 None:intergenic
TTTCCGCAGTGACATAGGCA+GGG 0.641235 6_4:-3962318 None:intergenic
TTGATTGTCAACAATGCTCG+TGG 0.642232 6_4:+3963038 Msa0971850:CDS
AATTGGAGCTCAGTTTGAGG+AGG 0.645215 6_4:+3962717 Msa0971850:CDS
TGTTGAGAATAGGCCTCTGG+TGG 0.646139 6_4:+3961899 Msa0971850:intron
AAATATGAGGAGTCATCGCA+TGG 0.646699 6_4:-3967703 None:intergenic
ATTCTCCGGTAATAGCCTGA+TGG 0.648132 6_4:-3962528 None:intergenic
TCCCTGGTGATGATGGAAGA+AGG 0.649337 6_4:-3960098 None:intergenic
TGAAGGAAAGACAGTTGGAA+CGG 0.651639 6_4:+3962588 Msa0971850:CDS
ACCTTCTTCCATCATCACCA+GGG 0.652169 6_4:+3960097 Msa0971850:CDS
ATAACAATAATGTCGCACTT+CGG 0.654035 6_4:-3962757 None:intergenic
TGCTGGTTTAACCGTCGCAG+AGG 0.660243 6_4:+3966855 Msa0971850:CDS
TGCTTAACTTAACCTGAGTG+AGG 0.662618 6_4:-3959861 None:intergenic
ATAGGCAGGGTGAAATGGTG+TGG 0.663821 6_4:-3962305 None:intergenic
GAGCATTAGGTATACGCGAG+TGG 0.665851 6_4:+3962002 Msa0971850:CDS
TCACATTGATCTCAATGCTG+CGG 0.666935 6_4:+3962396 Msa0971850:CDS
TGCTGGTTTAACTGTCGCAG+AGG 0.668788 6_4:+3962423 Msa0971850:CDS
GTTTCATCTATAGGTTACAG+TGG 0.672760 6_4:+3963195 Msa0971850:intron
TGCCTCTCACTGATAAGACA+AGG 0.678138 6_4:+3962785 Msa0971850:CDS
GTAGGTGTGTTCTACAAAGG+CGG 0.684274 6_4:+3961935 Msa0971850:CDS
ATGGTGGTTCCAGAAATATG+AGG 0.685776 6_4:-3963288 None:intergenic
GTGATCAGAACCAATGCCGG+CGG 0.702688 6_4:-3962377 None:intergenic
GTTGAATCGGCTATGTGATG+AGG 0.710161 6_4:-3959707 None:intergenic
TCACCCTGCCTATGTCACTG+CGG 0.753926 6_4:+3962315 Msa0971850:CDS
TCACCCTGCCTATGTCACCG+AGG 0.774835 6_4:+3966747 Msa0971850:CDS
TCACATTGATCTCAACGCCG+CGG 0.799346 6_4:+3966828 Msa0971850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATGTAAAATTCTTATT+GGG - chr6_4:3959778-3959797 None:intergenic 10.0%
!! AATATATGTAAAATTCTTAT+TGG - chr6_4:3959779-3959798 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAAAGT+AGG - chr6_4:3961268-3961287 None:intergenic 10.0%
!! GAATAATTTACTATAATAAA+TGG - chr6_4:3961549-3961568 None:intergenic 10.0%
!!! TTATAAATAGTCTTATAATT+AGG - chr6_4:3964817-3964836 None:intergenic 10.0%
!! TCAATATTAATATTTCATAT+TGG - chr6_4:3964940-3964959 None:intergenic 10.0%
!! TTTAGTTAAAAATATGAAAA+TGG - chr6_4:3965258-3965277 None:intergenic 10.0%
!! AAAAATTAAAAAACACAAAA+AGG - chr6_4:3965916-3965935 None:intergenic 10.0%
!!! TTTTTTAAAATCTAAAGTAT+TGG + chr6_4:3968010-3968029 Msa0971850:intron 10.0%
!!! TTTTTAAAATCTAAAGTATT+GGG + chr6_4:3968011-3968030 Msa0971850:intron 10.0%
!! TTAAATTAAAAAAGCAAGAA+AGG + chr6_4:3959807-3959826 Msa0971850:five_prime_UTR 15.0%
!! TAAATTAAAAAAGCAAGAAA+GGG + chr6_4:3959808-3959827 Msa0971850:five_prime_UTR 15.0%
!! AAACAAAAATTGTTTGAAAA+TGG + chr6_4:3960013-3960032 Msa0971850:exon 15.0%
!!! TTCATATCTAATTTTTTGTT+GGG + chr6_4:3961477-3961496 Msa0971850:intron 15.0%
!!! TAAATTTTGTTAGTCATTTT+AGG - chr6_4:3961734-3961753 None:intergenic 15.0%
!!! TACGATTTTAAACATTTTTT+CGG + chr6_4:3962152-3962171 Msa0971850:intron 15.0%
!! GATTGAAACTAAAATAAATA+CGG + chr6_4:3963703-3963722 Msa0971850:intron 15.0%
!!! ATCTTTATTTAGTAATTCAT+TGG - chr6_4:3964056-3964075 None:intergenic 15.0%
!!! GATAAATATTTTCAATTGAA+AGG - chr6_4:3964228-3964247 None:intergenic 15.0%
!! TCAATTGAAAATATTTATCA+TGG + chr6_4:3964229-3964248 Msa0971850:intron 15.0%
!!! GTATATGATTTTAAAATTGA+GGG - chr6_4:3965226-3965245 None:intergenic 15.0%
!!! ATTTTGTTGTTTCTTTTTAT+GGG + chr6_4:3965390-3965409 Msa0971850:intron 15.0%
!! ATTAGATAATTAGAAAACTT+AGG + chr6_4:3966077-3966096 Msa0971850:intron 15.0%
!!! TGTAATTTTGATACATTTAA+CGG + chr6_4:3961760-3961779 Msa0971850:intron 15.0%
!! TTCTCAATAATAACAAAAAA+TGG - chr6_4:3966416-3966435 None:intergenic 15.0%
!!! TTTTTGTTATTATTGAGAAT+AGG + chr6_4:3966417-3966436 Msa0971850:intron 15.0%
!! TACTATTATTGATCTATTAA+CGG + chr6_4:3967250-3967269 Msa0971850:intron 15.0%
!!! TTTATGTCATTAAGTTGAAT+CGG - chr6_4:3959723-3959742 None:intergenic 20.0%
!! CTTAATTTCATTCAATCATT+TGG + chr6_4:3960151-3960170 Msa0971850:intron 20.0%
!!! CTTTTAAAAATGAGTCTTAA+CGG + chr6_4:3960498-3960517 Msa0971850:intron 20.0%
!!! GTGTTTTTTTTTTTTGTGAT+CGG + chr6_4:3960539-3960558 Msa0971850:intron 20.0%
!!! TGTTTTTTTTTTTTGTGATC+GGG + chr6_4:3960540-3960559 Msa0971850:intron 20.0%
!! AATAATGCATAATATATCCA+AGG - chr6_4:3960580-3960599 None:intergenic 20.0%
!! TTAGACCTTATGTTTAATTA+AGG + chr6_4:3960667-3960686 Msa0971850:intron 20.0%
!! TAGACCTTATGTTTAATTAA+GGG + chr6_4:3960668-3960687 Msa0971850:intron 20.0%
!! CCTTAAAAAAAAATAATGCA+CGG - chr6_4:3960782-3960801 None:intergenic 20.0%
!!! CGTGCATTATTTTTTTTTAA+GGG + chr6_4:3960780-3960799 Msa0971850:intron 20.0%
!!! TCAAATGATTAACTTTTACA+AGG + chr6_4:3961164-3961183 Msa0971850:intron 20.0%
!!! CAAATGATTAACTTTTACAA+GGG + chr6_4:3961165-3961184 Msa0971850:intron 20.0%
!!! TACATGATATTTAACTTCAT+TGG - chr6_4:3961366-3961385 None:intergenic 20.0%
!!! AACAATTGTTTGATTTCATT+GGG - chr6_4:3961401-3961420 None:intergenic 20.0%
!!! TAACAATTGTTTGATTTCAT+TGG - chr6_4:3961402-3961421 None:intergenic 20.0%
!! GAAATCAAACAATTGTTAAT+TGG + chr6_4:3961404-3961423 Msa0971850:intron 20.0%
!! CAACAAAAAATTAGATATGA+AGG - chr6_4:3961478-3961497 None:intergenic 20.0%
!!! CTTCATATCTAATTTTTTGT+TGG + chr6_4:3961476-3961495 Msa0971850:intron 20.0%
!!! ACTTTATGGATTAAATTGAT+CGG + chr6_4:3961681-3961700 Msa0971850:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG - chr6_4:3962658-3962677 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG - chr6_4:3962659-3962678 None:intergenic 20.0%
!! CAAACTAGAAATTAAGATAA+AGG - chr6_4:3963354-3963373 None:intergenic 20.0%
!!! ATAATTTTGAGGAAAACTAT+AGG + chr6_4:3963440-3963459 Msa0971850:intron 20.0%
!!! TAATTTTGAGGAAAACTATA+GGG + chr6_4:3963441-3963460 Msa0971850:intron 20.0%
!! ATACATCTAAAAATTTGTAG+AGG - chr6_4:3964866-3964885 None:intergenic 20.0%
!! TTTATACATCAAGAGTAATT+TGG + chr6_4:3964965-3964984 Msa0971850:intron 20.0%
!! AAATGAAACCAAGAAATAAA+CGG - chr6_4:3965060-3965079 None:intergenic 20.0%
!!! GGTATATGATTTTAAAATTG+AGG - chr6_4:3965227-3965246 None:intergenic 20.0%
!! AATATGAAAATGGATCAAAA+CGG - chr6_4:3965248-3965267 None:intergenic 20.0%
!!! ATAATGATGTGACATATTTT+AGG + chr6_4:3965281-3965300 Msa0971850:intron 20.0%
!!! GGAATTTTATTGTAATTTCA+TGG - chr6_4:3965352-3965371 None:intergenic 20.0%
!!! CATTTTGTTGTTTCTTTTTA+TGG + chr6_4:3965389-3965408 Msa0971850:intron 20.0%
!!! AAATTTTATAGTGTACAGAT+AGG - chr6_4:3965784-3965803 None:intergenic 20.0%
!! TGTCATATCATTATAAATTG+AGG + chr6_4:3965973-3965992 Msa0971850:intron 20.0%
!! GTCATATCATTATAAATTGA+GGG + chr6_4:3965974-3965993 Msa0971850:intron 20.0%
!! ATGTTATAGATTAAACTGAT+CGG + chr6_4:3966216-3966235 Msa0971850:intron 20.0%
!! TATACATTCAGATATCAAAA+TGG + chr6_4:3966332-3966351 Msa0971850:intron 20.0%
!!! TCTAAGATAAAGTTTAAAGA+GGG - chr6_4:3966639-3966658 None:intergenic 20.0%
!!! TTCTAAGATAAAGTTTAAAG+AGG - chr6_4:3966640-3966659 None:intergenic 20.0%
!!! AACTTTATCTTAGAAGTTTT+TGG + chr6_4:3966645-3966664 Msa0971850:intron 20.0%
!! TATAAAAGGTTACAGTTAAA+GGG - chr6_4:3962658-3962677 None:intergenic 20.0%
!! ATATAAAAGGTTACAGTTAA+AGG - chr6_4:3962659-3962678 None:intergenic 20.0%
!! TAAGTCTATCATGATATAAA+AGG - chr6_4:3967104-3967123 None:intergenic 20.0%
!! TAAATTATACCTTGTCTTAT+CGG - chr6_4:3967229-3967248 None:intergenic 20.0%
!! GAAACTAGAAATTAAGATAA+AGG - chr6_4:3967786-3967805 None:intergenic 20.0%
! AAAACAAAAAAACTTGAAGG+AGG - chr6_4:3959684-3959703 None:intergenic 25.0%
! TGCAAAACAAAAAAACTTGA+AGG - chr6_4:3959687-3959706 None:intergenic 25.0%
!!! CGTTAAGACTCATTTTTAAA+AGG - chr6_4:3960500-3960519 None:intergenic 25.0%
!!! GTTTTTTTTTTTTGTGATCG+GGG + chr6_4:3960541-3960560 Msa0971850:intron 25.0%
! ATAGCCCTTAATTAAACATA+AGG - chr6_4:3960675-3960694 None:intergenic 25.0%
!! TATATACATGCTGATTACAT+GGG + chr6_4:3960692-3960711 Msa0971850:intron 25.0%
!!! CCGTGCATTATTTTTTTTTA+AGG + chr6_4:3960779-3960798 Msa0971850:intron 25.0%
!!! CTTGTCTAGAACTAAATTTT+TGG + chr6_4:3961307-3961326 Msa0971850:intron 25.0%
!!! ATTTTTTGTTGGGAAAAATC+TGG + chr6_4:3961487-3961506 Msa0971850:intron 25.0%
!! TTAAATGTGTGAAGCATTAT+CGG + chr6_4:3961628-3961647 Msa0971850:intron 25.0%
!!! CTCTTTTGTTTGTAACTTTA+TGG + chr6_4:3961667-3961686 Msa0971850:intron 25.0%
!! CTTTATGGATTAAATTGATC+GGG + chr6_4:3961682-3961701 Msa0971850:intron 25.0%
! CATACATTCAGATATCAAAA+TGG + chr6_4:3961800-3961819 Msa0971850:intron 25.0%
!!! TTTTTTCTGTTGTTGAGAAT+AGG + chr6_4:3961889-3961908 Msa0971850:intron 25.0%
! TAAGTCTATCGTGATATAAA+AGG - chr6_4:3962672-3962691 None:intergenic 25.0%
!! TTGAAATCTGAAGTCTATAA+GGG + chr6_4:3962853-3962872 Msa0971850:intron 25.0%
! ATTCCAATATCAAAATGACT+TGG + chr6_4:3962886-3962905 Msa0971850:intron 25.0%
!!! AAACCAAGTCATTTTGATAT+TGG - chr6_4:3962892-3962911 None:intergenic 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG + chr6_4:3962972-3962991 Msa0971850:intron 25.0%
! GAAAAGAGAGAAAGAATTTA+AGG - chr6_4:3963384-3963403 None:intergenic 25.0%
!! GCTCTTAAATGATAATTTTG+AGG + chr6_4:3963429-3963448 Msa0971850:intron 25.0%
!! ACTACATTTTCTGCATTTTT+TGG + chr6_4:3963832-3963851 Msa0971850:intron 25.0%
! TTACTAAATAAAGATATCCG+CGG + chr6_4:3964061-3964080 Msa0971850:intron 25.0%
! CTTGTTTAATAAAACTGCAA+TGG + chr6_4:3964121-3964140 Msa0971850:intron 25.0%
!!! TGAGTTTGAATACCTTTTTT+AGG + chr6_4:3964309-3964328 Msa0971850:intron 25.0%
!! ATACTTTTGAATCATGAGTT+AGG - chr6_4:3964450-3964469 None:intergenic 25.0%
!!! ATTCTTTTGGATTAGAGATT+TGG - chr6_4:3964649-3964668 None:intergenic 25.0%
! TTTCATATTGGAAGACAAAT+TGG - chr6_4:3964928-3964947 None:intergenic 25.0%
! AATGAAACCAAGAAATAAAC+GGG - chr6_4:3965059-3965078 None:intergenic 25.0%
! AGTTCATCATACTGTATTTA+CGG - chr6_4:3965499-3965518 None:intergenic 25.0%
! TGAGTGAAGTTTGAAAAAAA+TGG + chr6_4:3965597-3965616 Msa0971850:intron 25.0%
!! TTACCTTTTATCTTTGTTCT+AGG + chr6_4:3965629-3965648 Msa0971850:intron 25.0%
! AATCCTAGAACAAAGATAAA+AGG - chr6_4:3965635-3965654 None:intergenic 25.0%
!! TTGATTTGATTGTCAAAACA+CGG + chr6_4:3965682-3965701 Msa0971850:intron 25.0%
! TTATAAATTGAGGGAAAATG+TGG + chr6_4:3965983-3966002 Msa0971850:intron 25.0%
! TATAAATTGAGGGAAAATGT+GGG + chr6_4:3965984-3966003 Msa0971850:intron 25.0%
! AAAATCGCCTAAATATATCA+AGG + chr6_4:3966047-3966066 Msa0971850:intron 25.0%
! AAATCGCCTAAATATATCAA+GGG + chr6_4:3966048-3966067 Msa0971850:intron 25.0%
! AGATAATTAGAAAACTTAGG+AGG + chr6_4:3966080-3966099 Msa0971850:intron 25.0%
!! AGCTTTAATGTTATCATCTA+CGG + chr6_4:3966118-3966137 Msa0971850:intron 25.0%
!!! TTTTAGTCTTTTAATGTGTG+AGG + chr6_4:3966152-3966171 Msa0971850:intron 25.0%
! ATACATAAATACCGAGTAAA+CGG - chr6_4:3966358-3966377 None:intergenic 25.0%
! ATATCATGATAGACTTAAGA+TGG + chr6_4:3967107-3967126 Msa0971850:CDS 25.0%
!! TTTTTCTTTTTGTGATTCAG+AGG + chr6_4:3962972-3962991 Msa0971850:intron 25.0%
!!! AACAAATTATTTTTGACAGC+TGG - chr6_4:3967491-3967510 None:intergenic 25.0%
! ATTACTTCAAAGTTCAAACA+TGG - chr6_4:3967591-3967610 None:intergenic 25.0%
!! ACAATCTTGTTCATCAATTT+TGG + chr6_4:3968135-3968154 Msa0971850:intron 25.0%
!!! ATTAGCATACCTTTTTTCTT+TGG + chr6_4:3968240-3968259 Msa0971850:intron 25.0%
! AAAAATGGAGAAAATGTAGT+CGG - chr6_4:3968286-3968305 None:intergenic 25.0%
! CAGTAATTTACGCAAAAAAA+TGG - chr6_4:3968301-3968320 None:intergenic 25.0%
AAAAGATTGAGCTTACATGA+AGG - chr6_4:3960124-3960143 None:intergenic 30.0%
TAAGAACTCAAAAGAAGCTT+TGG + chr6_4:3960268-3960287 Msa0971850:intron 30.0%
! CTATATACATGCTGATTACA+TGG + chr6_4:3960691-3960710 Msa0971850:intron 30.0%
! TAACTTTTACAAGGGCAAAA+TGG + chr6_4:3961173-3961192 Msa0971850:intron 30.0%
! AACTTTTACAAGGGCAAAAT+GGG + chr6_4:3961174-3961193 Msa0971850:intron 30.0%
ATTTCATTGGGTGAAAAAAC+TGG - chr6_4:3961389-3961408 None:intergenic 30.0%
GAAATGTTAGATGAAACTGA+CGG - chr6_4:3961441-3961460 None:intergenic 30.0%
TCAACACATCCAACAAAATT+GGG - chr6_4:3961980-3961999 None:intergenic 30.0%
TTCAACACATCCAACAAAAT+TGG - chr6_4:3961981-3962000 None:intergenic 30.0%
! AATTTTGTTGGATGTGTTGA+AGG + chr6_4:3961980-3961999 Msa0971850:CDS 30.0%
!! AATAAGAGGGTGGATTAATT+TGG - chr6_4:3962098-3962117 None:intergenic 30.0%
ATATCACGATAGACTTAAGA+TGG + chr6_4:3962675-3962694 Msa0971850:CDS 30.0%
ATAACAATAATGTCGCACTT+CGG - chr6_4:3962760-3962779 None:intergenic 30.0%
! CTTGAAATCTGAAGTCTATA+AGG + chr6_4:3962852-3962871 Msa0971850:intron 30.0%
! AGAATTGCTAAGTTGAAGAA+AGG + chr6_4:3963011-3963030 Msa0971850:CDS 30.0%
AAACTATAGGGTCATATACT+AGG + chr6_4:3963453-3963472 Msa0971850:intron 30.0%
!!! GGCATTCTAAAACAGTTTTT+TGG - chr6_4:3963650-3963669 None:intergenic 30.0%
! GTCTAGAACATTAACAATGT+TGG - chr6_4:3963671-3963690 None:intergenic 30.0%
CGTTAAACTGGTTAAGATAA+AGG + chr6_4:3963736-3963755 Msa0971850:intron 30.0%
AGAAGTTAACCAAAGAACAA+GGG - chr6_4:3963809-3963828 None:intergenic 30.0%
AAGAAGTTAACCAAAGAACA+AGG - chr6_4:3963810-3963829 None:intergenic 30.0%
ATACATAGAGTTGCAACATA+AGG + chr6_4:3964372-3964391 Msa0971850:intron 30.0%
AACATAAGGTCTTAAGTTTG+AGG + chr6_4:3964386-3964405 Msa0971850:intron 30.0%
GAGTTAGGTCATGTAATAAA+AGG - chr6_4:3964435-3964454 None:intergenic 30.0%
AAGTCTACTACTTACTACTT+TGG + chr6_4:3964593-3964612 Msa0971850:intron 30.0%
! TATTTGACCCGTTTATTTCT+TGG + chr6_4:3965049-3965068 Msa0971850:intron 30.0%
! ACTCTGCTTTCTTTTTATGT+TGG + chr6_4:3965156-3965175 Msa0971850:intron 30.0%
! AATGTGCAGAAGAATTTTCA+AGG - chr6_4:3965373-3965392 None:intergenic 30.0%
ACATCACATTTCTTTCTTCT+TGG + chr6_4:3965549-3965568 Msa0971850:intron 30.0%
!! CTTTGTTCTAGGATTAAGTT+TGG + chr6_4:3965640-3965659 Msa0971850:intron 30.0%
AAAATGACGTACAGATGAAA+GGG + chr6_4:3965848-3965867 Msa0971850:intron 30.0%
! ATTGGTAATATTCATGCATG+AGG + chr6_4:3965939-3965958 Msa0971850:intron 30.0%
ATCATGAAATTGCACAATTG+AGG + chr6_4:3966011-3966030 Msa0971850:intron 30.0%
AATCGCCTAAATATATCAAG+GGG + chr6_4:3966049-3966068 Msa0971850:intron 30.0%
TTTGACCCCTTGATATATTT+AGG - chr6_4:3966057-3966076 None:intergenic 30.0%
GCTTTAATGTTATCATCTAC+GGG + chr6_4:3966119-3966138 Msa0971850:intron 30.0%
! TTTAATGTGTGAGGCATTAT+CGG + chr6_4:3966161-3966180 Msa0971850:intron 30.0%
ACATCCAACAAAATTAGGAT+TGG - chr6_4:3966503-3966522 None:intergenic 30.0%
TCAACACATCCAACAAAATT+AGG - chr6_4:3961980-3961999 None:intergenic 30.0%
! AATTTTGTTGGATGTGTTGA+AGG + chr6_4:3961980-3961999 Msa0971850:CDS 30.0%
TCAAAATTCTAACCAGAATC+AGG - chr6_4:3966604-3966623 None:intergenic 30.0%
! AAAAAAGTTTGCTCATTGCT+AGG - chr6_4:3967315-3967334 None:intergenic 30.0%
CAGAAACATAAATGAAATCG+AGG - chr6_4:3967554-3967573 None:intergenic 30.0%
TTTCATCTTATAGGTTACAG+TGG + chr6_4:3967623-3967642 Msa0971850:intron 30.0%
AAATCTGAAAAATTCCGATC+TGG - chr6_4:3967974-3967993 None:intergenic 30.0%
TAGTTTCTACAACAGGTTTA+GGG - chr6_4:3968182-3968201 None:intergenic 30.0%
TTAGTTTCTACAACAGGTTT+AGG - chr6_4:3968183-3968202 None:intergenic 30.0%
! AACAGTTTAGTTTCTACAAC+AGG - chr6_4:3968189-3968208 None:intergenic 30.0%
TGAACTTAGCCAAAGAAAAA+AGG - chr6_4:3968252-3968271 None:intergenic 30.0%
TAAAAAAGCAAGAAAGGGAG+AGG + chr6_4:3959813-3959832 Msa0971850:five_prime_UTR 35.0%
GGGGTTTAAATTCAAAACCT+TGG + chr6_4:3960560-3960579 Msa0971850:intron 35.0%
AATGAGAGAGTGAGTGTTAT+TGG + chr6_4:3960631-3960650 Msa0971850:intron 35.0%
ATGGGTCAAATAAATTGGGA+CGG - chr6_4:3960974-3960993 None:intergenic 35.0%
TCCCAATTTATTTGACCCAT+TGG + chr6_4:3960974-3960993 Msa0971850:intron 35.0%
GCCAATGGGTCAAATAAATT+GGG - chr6_4:3960978-3960997 None:intergenic 35.0%
AGCCAATGGGTCAAATAAAT+TGG - chr6_4:3960979-3960998 None:intergenic 35.0%
TGTTTAACTGGAGCAACTAA+GGG - chr6_4:3961052-3961071 None:intergenic 35.0%
TTGCTCCAGTTAAACAGAAA+AGG + chr6_4:3961056-3961075 Msa0971850:intron 35.0%
! TTGGTCCTTTTCTGTTTAAC+TGG - chr6_4:3961064-3961083 None:intergenic 35.0%
!! AAAATGCCCTTAGTTGATGA+AGG - chr6_4:3961095-3961114 None:intergenic 35.0%
!!! TTCATCAACTAAGGGCATTT+TGG + chr6_4:3961094-3961113 Msa0971850:intron 35.0%
ATGAGTGATTAACTCTGATG+AGG + chr6_4:3961132-3961151 Msa0971850:intron 35.0%
TGAGTGATTAACTCTGATGA+GGG + chr6_4:3961133-3961152 Msa0971850:intron 35.0%
CTCAGGGATGAAAAATCAAA+TGG + chr6_4:3961209-3961228 Msa0971850:intron 35.0%
ATCAAATGGCCTATAATTGC+AGG + chr6_4:3961223-3961242 Msa0971850:intron 35.0%
TCAAATGGCCTATAATTGCA+GGG + chr6_4:3961224-3961243 Msa0971850:intron 35.0%
CATTTCATCCCTGCAATTAT+AGG - chr6_4:3961235-3961254 None:intergenic 35.0%
ACAAGCATACATAAGAGACA+AGG - chr6_4:3961833-3961852 None:intergenic 35.0%
ATTGTAGGTGTGTTCTACAA+AGG + chr6_4:3961932-3961951 Msa0971850:CDS 35.0%
! TCCTTGAATCCCAATTTTGT+TGG + chr6_4:3961968-3961987 Msa0971850:CDS 35.0%
TCCAACAAAATTGGGATTCA+AGG - chr6_4:3961972-3961991 None:intergenic 35.0%
ATTGTCACTGATGACAAAGA+AGG + chr6_4:3962049-3962068 Msa0971850:CDS 35.0%
CACAAACGTGAGATATTATC+TGG - chr6_4:3962207-3962226 None:intergenic 35.0%
TGAGAATTCTCATTCTTGTG+AGG + chr6_4:3962488-3962507 Msa0971850:CDS 35.0%
TGTCTTTCCTTCAAGATCAT+AGG - chr6_4:3962581-3962600 None:intergenic 35.0%
! TTGGGAAACTTTTACTCCAA+AGG + chr6_4:3962626-3962645 Msa0971850:CDS 35.0%
CCAATTTCTTTCTCCAATTC+AGG - chr6_4:3962703-3962722 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG + chr6_4:3962700-3962719 Msa0971850:CDS 35.0%
! GAAACACATTTTATGTCAGC+TGG - chr6_4:3963132-3963151 None:intergenic 35.0%
AACACCTGAGTTTCATCTAT+AGG + chr6_4:3963186-3963205 Msa0971850:intron 35.0%
GTAACCTATAGATGAAACTC+AGG - chr6_4:3963193-3963212 None:intergenic 35.0%
GTTTCATCTATAGGTTACAG+TGG + chr6_4:3963195-3963214 Msa0971850:intron 35.0%
ATAAACTACCTGTGCATCAA+TGG - chr6_4:3963310-3963329 None:intergenic 35.0%
ACAAACAAGGACACAAACAA+TGG - chr6_4:3963564-3963583 None:intergenic 35.0%
GTATCTATGAAGCACAAACA+AGG - chr6_4:3963577-3963596 None:intergenic 35.0%
GGAAATGAGTAACGTTAAAC+TGG + chr6_4:3963724-3963743 Msa0971850:intron 35.0%
! TTCACAATGTAGTTCTGTTC+AGG - chr6_4:3963953-3963972 None:intergenic 35.0%
TGAACAGAACTACATTGTGA+AGG + chr6_4:3963952-3963971 Msa0971850:intron 35.0%
!! TTCTGAGTCTTGTGGTTTTA+AGG + chr6_4:3964030-3964049 Msa0971850:intron 35.0%
AGTACATTATTACAATGCCG+CGG - chr6_4:3964081-3964100 None:intergenic 35.0%
! TTCTGAAAGATGACATCTTG+TGG - chr6_4:3964264-3964283 None:intergenic 35.0%
TGAGTTCTCTAGCCTAAAAA+AGG - chr6_4:3964324-3964343 None:intergenic 35.0%
! TAAGGTCTTAAGTTTGAGGT+TGG + chr6_4:3964390-3964409 Msa0971850:intron 35.0%
!! AAGTAGTAGACTTTGAAGCA+CGG - chr6_4:3964586-3964605 None:intergenic 35.0%
CTTCAAATTGCTGAAAGACA+GGG - chr6_4:3964684-3964703 None:intergenic 35.0%
! TCTTTCAGCAATTTGAAGCT+TGG + chr6_4:3964686-3964705 Msa0971850:intron 35.0%
! TCTGTTTTCGCTCATGAAAT+TGG + chr6_4:3965199-3965218 Msa0971850:intron 35.0%
GTCAATAATCTCACATCATC+AGG - chr6_4:3965327-3965346 None:intergenic 35.0%
!! ACTTTTTCCTCCCAAATGTT+TGG + chr6_4:3965426-3965445 Msa0971850:intron 35.0%
! TGCTTTTGGACCAAACATTT+GGG - chr6_4:3965439-3965458 None:intergenic 35.0%
! ATGCTTTTGGACCAAACATT+TGG - chr6_4:3965440-3965459 None:intergenic 35.0%
AAATGTTTGGTCCAAAAGCA+TGG + chr6_4:3965439-3965458 Msa0971850:intron 35.0%
ATGTAGTTCAAGCACAAGAA+AGG - chr6_4:3965533-3965552 None:intergenic 35.0%
GAAAATGACGTACAGATGAA+AGG + chr6_4:3965847-3965866 Msa0971850:intron 35.0%
TATCAAAATGGCCGTTTACT+CGG + chr6_4:3966344-3966363 Msa0971850:intron 35.0%
TATTATTGAGAATAGGCCTC+TGG + chr6_4:3966424-3966443 Msa0971850:intron 35.0%
! AATTTTCTTCTTTCCTCCAG+AGG - chr6_4:3966443-3966462 None:intergenic 35.0%
GGAGGAAAGAAGAAAATTGT+AGG + chr6_4:3966445-3966464 Msa0971850:CDS 35.0%
ATTGTAGGTGTGTTCTACAA+AGG + chr6_4:3961932-3961951 Msa0971850:CDS 35.0%
! GCATCCAATCCTAATTTTGT+TGG + chr6_4:3966496-3966515 Msa0971850:CDS 35.0%
ATTGTCACAGATGACAAAGA+AGG + chr6_4:3966577-3966596 Msa0971850:CDS 35.0%
CGCTTTCTTAATTCTTTCCT+CGG - chr6_4:3966767-3966786 None:intergenic 35.0%
!!! TTACAGTTGCTTTTAACTGC+CGG + chr6_4:3966793-3966812 Msa0971850:CDS 35.0%
CTATGATCTTGAAGGAAAGA+CGG + chr6_4:3962579-3962598 Msa0971850:CDS 35.0%
CCAATTTCTTTCTCCAATTC+AGG - chr6_4:3962703-3962722 None:intergenic 35.0%
CCTGAATTGGAGAAAGAAAT+TGG + chr6_4:3962700-3962719 Msa0971850:CDS 35.0%
AGAAATTGGAGCTAAGTTTG+AGG + chr6_4:3967146-3967165 Msa0971850:CDS 35.0%
! ACTTTGGTAGCATTGTATCA+AGG - chr6_4:3967176-3967195 None:intergenic 35.0%
ATAACAACTATGTCGCACTT+TGG - chr6_4:3967192-3967211 None:intergenic 35.0%
GGTATGACTCATAGTTTACA+TGG - chr6_4:3967294-3967313 None:intergenic 35.0%
! AGAATCGCTAAGTTGAAGAA+AGG + chr6_4:3967370-3967389 Msa0971850:CDS 35.0%
TTGATTGTTAACAATGCTCG+TGG + chr6_4:3967397-3967416 Msa0971850:CDS 35.0%
TGATTGTTAACAATGCTCGT+GGG + chr6_4:3967398-3967417 Msa0971850:CDS 35.0%
ACAGCTGAGTTTCATCTTAT+AGG + chr6_4:3967614-3967633 Msa0971850:intron 35.0%
ATGGTAGTTCCAGAAATATG+AGG - chr6_4:3967719-3967738 None:intergenic 35.0%
ATAAACAACCTGTGCATCAA+TGG - chr6_4:3967738-3967757 None:intergenic 35.0%
TTCTTCTCGTAAATGTTGCA+AGG - chr6_4:3967887-3967906 None:intergenic 35.0%
TTTAGGGATTCTTATTCGTG+CGG - chr6_4:3968166-3968185 None:intergenic 35.0%
TTCACAATGTAATGCTGTTC+AGG - chr6_4:3968409-3968428 None:intergenic 35.0%
TAACTTAACCTGAGTGAGGA+AGG - chr6_4:3959860-3959879 None:intergenic 40.0%
TGCTTAACTTAACCTGAGTG+AGG - chr6_4:3959864-3959883 None:intergenic 40.0%
TGAAACGTGAAGAGTAAGAG+GGG - chr6_4:3959939-3959958 None:intergenic 40.0%
GTGAAACGTGAAGAGTAAGA+GGG - chr6_4:3959940-3959959 None:intergenic 40.0%
AGTGAAACGTGAAGAGTAAG+AGG - chr6_4:3959941-3959960 None:intergenic 40.0%
! CTTTGAAGAAGCAGTGATCA+AGG - chr6_4:3960060-3960079 None:intergenic 40.0%
! AAAGAAGCTTTGGTGTGATC+TGG + chr6_4:3960278-3960297 Msa0971850:intron 40.0%
TGACTACTGATGGAGACAAA+GGG - chr6_4:3960379-3960398 None:intergenic 40.0%
TTGACTACTGATGGAGACAA+AGG - chr6_4:3960380-3960399 None:intergenic 40.0%
!! TGACAAGTGTTGACTACTGA+TGG - chr6_4:3960389-3960408 None:intergenic 40.0%
TCTCATTGTTCTGTGAGCTT+AGG - chr6_4:3960618-3960637 None:intergenic 40.0%
GTCAAATAAATTGGGACGGA+GGG - chr6_4:3960970-3960989 None:intergenic 40.0%
TCTGTGTGAAATGAGCCAAT+GGG - chr6_4:3960992-3961011 None:intergenic 40.0%
CTGTTTAACTGGAGCAACTA+AGG - chr6_4:3961053-3961072 None:intergenic 40.0%
! GTTGATGAAGGAGGGTAATT+TGG - chr6_4:3961083-3961102 None:intergenic 40.0%
TTACCCTCCTTCATCAACTA+AGG + chr6_4:3961085-3961104 Msa0971850:intron 40.0%
TACCCTCCTTCATCAACTAA+GGG + chr6_4:3961086-3961105 Msa0971850:intron 40.0%
! TTTTACAAGGGCAAAATGGG+AGG + chr6_4:3961177-3961196 Msa0971850:intron 40.0%
GATCCACTATAAAGCTTGGT+GGG - chr6_4:3961523-3961542 None:intergenic 40.0%
AGATCCACTATAAAGCTTGG+TGG - chr6_4:3961524-3961543 None:intergenic 40.0%
AATCTTCTTCTTTCCACCAG+AGG - chr6_4:3961915-3961934 None:intergenic 40.0%
GGTGGAAAGAAGAAGATTGT+AGG + chr6_4:3961917-3961936 Msa0971850:CDS 40.0%
GACAAAGAAGGACTCAATTC+TGG + chr6_4:3962061-3962080 Msa0971850:CDS 40.0%
ACGGCATAGACGTAATAAGA+GGG - chr6_4:3962111-3962130 None:intergenic 40.0%
TACGGCATAGACGTAATAAG+AGG - chr6_4:3962112-3962131 None:intergenic 40.0%
GATATCAGGACATTGAGATC+AGG - chr6_4:3962286-3962305 None:intergenic 40.0%
AATTCTTTCCGCAGTGACAT+AGG - chr6_4:3962326-3962345 None:intergenic 40.0%
AATGTGATCAGAACCAATGC+CGG - chr6_4:3962383-3962402 None:intergenic 40.0%
TCACATTGATCTCAATGCTG+CGG + chr6_4:3962396-3962415 Msa0971850:CDS 40.0%
CATAGAGCCTATGATCTTGA+AGG + chr6_4:3962571-3962590 Msa0971850:CDS 40.0%
GATCTTGAAGGAAAGACAGT+TGG + chr6_4:3962583-3962602 Msa0971850:CDS 40.0%
TGAAGGAAAGACAGTTGGAA+CGG + chr6_4:3962588-3962607 Msa0971850:CDS 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG - chr6_4:3962645-3962664 None:intergenic 40.0%
AGAAATTGGAGCTCAGTTTG+AGG + chr6_4:3962714-3962733 Msa0971850:CDS 40.0%
TACCTTGTCTTATCAGTGAG+AGG - chr6_4:3962790-3962809 None:intergenic 40.0%
TTGATTGTCAACAATGCTCG+TGG + chr6_4:3963038-3963057 Msa0971850:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG + chr6_4:3963205-3963224 Msa0971850:intron 40.0%
TGAGGAGTCATAGCATGATT+AGG - chr6_4:3963273-3963292 None:intergenic 40.0%
GCTATGACTCCTCATATTTC+TGG + chr6_4:3963279-3963298 Msa0971850:CDS 40.0%
ATGGTGGTTCCAGAAATATG+AGG - chr6_4:3963291-3963310 None:intergenic 40.0%
ATGGTAACACTGACACATGT+GGG - chr6_4:3963545-3963564 None:intergenic 40.0%
AATGGTAACACTGACACATG+TGG - chr6_4:3963546-3963565 None:intergenic 40.0%
GCATACATACCCTTGTTCTT+TGG + chr6_4:3963797-3963816 Msa0971850:intron 40.0%
GAGTCAAAGATATGCTTGAG+AGG + chr6_4:3963906-3963925 Msa0971850:CDS 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG + chr6_4:3963916-3963935 Msa0971850:CDS 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG + chr6_4:3963917-3963936 Msa0971850:CDS 40.0%
ACAGAACTACATTGTGAAGG+AGG + chr6_4:3963955-3963974 Msa0971850:intron 40.0%
CAGAACTACATTGTGAAGGA+GGG + chr6_4:3963956-3963975 Msa0971850:intron 40.0%
GATACTACATTCACCGGTAT+TGG - chr6_4:3963994-3964013 None:intergenic 40.0%
CTCTTCGATACTACATTCAC+CGG - chr6_4:3964000-3964019 None:intergenic 40.0%
! GTGAATGTAGTATCGAAGAG+TGG + chr6_4:3964000-3964019 Msa0971850:intron 40.0%
GCTTCAAATTGCTGAAAGAC+AGG - chr6_4:3964685-3964704 None:intergenic 40.0%
! TTTTGGACCAAACATTTGGG+AGG - chr6_4:3965436-3965455 None:intergenic 40.0%
! GTAAGACAGAAGCATGTATG+CGG - chr6_4:3965762-3965781 None:intergenic 40.0%
AAATTGAGGGAAAATGTGGG+AGG + chr6_4:3965987-3966006 Msa0971850:intron 40.0%
TGCACAATTGAGGAACTTGA+AGG + chr6_4:3966021-3966040 Msa0971850:intron 40.0%
GGTGAAATGGTGTAGATATC+AGG - chr6_4:3966732-3966751 None:intergenic 40.0%
AATTCTTTCCTCGGTGACAT+AGG - chr6_4:3966758-3966777 None:intergenic 40.0%
AATGTGATCAGAACCAATGC+CGG - chr6_4:3962383-3962402 None:intergenic 40.0%
TGAGAATTCTCATTCTCGTG+AGG + chr6_4:3966920-3966939 Msa0971850:CDS 40.0%
CATAGAGCCTATGATCTTGA+AGG + chr6_4:3962571-3962590 Msa0971850:CDS 40.0%
CGTCTTTCCTTCAAGATCAT+AGG - chr6_4:3967013-3967032 None:intergenic 40.0%
AGTTAAAGGGTTTCAGCCTT+TGG - chr6_4:3962645-3962664 None:intergenic 40.0%
ACTTAAGATGGAGCCTGAAT+TGG + chr6_4:3967119-3967138 Msa0971850:CDS 40.0%
GATTGTTAACAATGCTCGTG+GGG + chr6_4:3967399-3967418 Msa0971850:CDS 40.0%
! TAGGTTACAGTGGTGATGTT+TGG + chr6_4:3963205-3963224 Msa0971850:intron 40.0%
AAATATGAGGAGTCATCGCA+TGG - chr6_4:3967706-3967725 None:intergenic 40.0%
TTTGGTCATTGGATCCAGAT+CGG + chr6_4:3967957-3967976 Msa0971850:intron 40.0%
CAGTGACATTGGATTGAGAT+CGG - chr6_4:3968054-3968073 None:intergenic 40.0%
AGACACTCCAAATCCATCAT+AGG + chr6_4:3968111-3968130 Msa0971850:intron 40.0%
!! GATTGTGCCTATGATGGATT+TGG - chr6_4:3968121-3968140 None:intergenic 40.0%
GAACAAGATTGTGCCTATGA+TGG - chr6_4:3968127-3968146 None:intergenic 40.0%
GAGAAAATGTAGTCGGTAGT+AGG - chr6_4:3968279-3968298 None:intergenic 40.0%
GAGTCAAAGATATGCTTGAG+AGG + chr6_4:3963906-3963925 Msa0971850:CDS 40.0%
!! TATGCTTGAGAGGCACTTTA+AGG + chr6_4:3963916-3963935 Msa0971850:CDS 40.0%
!! ATGCTTGAGAGGCACTTTAA+GGG + chr6_4:3963917-3963936 Msa0971850:CDS 40.0%
ACAGCATTACATTGTGAAGC+AGG + chr6_4:3968411-3968430 Msa0971850:CDS 40.0%
CAGCATTACATTGTGAAGCA+GGG + chr6_4:3968412-3968431 Msa0971850:CDS 40.0%
GTTGAATCGGCTATGTGATG+AGG - chr6_4:3959710-3959729 None:intergenic 45.0%
AAACGTGAAGAGTAAGAGGG+GGG - chr6_4:3959937-3959956 None:intergenic 45.0%
GAAACGTGAAGAGTAAGAGG+GGG - chr6_4:3959938-3959957 None:intergenic 45.0%
ACCTTCTTCCATCATCACCA+GGG + chr6_4:3960097-3960116 Msa0971850:CDS 45.0%
GGTCAAATAAATTGGGACGG+AGG - chr6_4:3960971-3960990 None:intergenic 45.0%
CTCTGTGTGAAATGAGCCAA+TGG - chr6_4:3960993-3961012 None:intergenic 45.0%
!!! TGGAGCAACTAAGGGCATTT+TGG - chr6_4:3961044-3961063 None:intergenic 45.0%
!! TGCCCTTAGTTGATGAAGGA+GGG - chr6_4:3961091-3961110 None:intergenic 45.0%
!! ATGCCCTTAGTTGATGAAGG+AGG - chr6_4:3961092-3961111 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr6_4:3961192-3961211 Msa0971850:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr6_4:3961193-3961212 Msa0971850:intron 45.0%
! TTGCCCACCAAGCTTTATAG+TGG + chr6_4:3961517-3961536 Msa0971850:intron 45.0%
GGCAGATCCACTATAAAGCT+TGG - chr6_4:3961527-3961546 None:intergenic 45.0%
TGTTGTTGAGAATAGGCCTC+TGG + chr6_4:3961896-3961915 Msa0971850:intron 45.0%
GTAGGTGTGTTCTACAAAGG+CGG + chr6_4:3961935-3961954 Msa0971850:CDS 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG + chr6_4:3961989-3962008 Msa0971850:CDS 45.0%
ATTAGGTATACGCGAGTGGT+TGG + chr6_4:3962006-3962025 Msa0971850:CDS 45.0%
GCATAGACGTAATAAGAGGG+TGG - chr6_4:3962108-3962127 None:intergenic 45.0%
GGTGAAATGGTGTGGATATC+AGG - chr6_4:3962300-3962319 None:intergenic 45.0%
CTTGTGAGGAATTTCTTGCC+TGG + chr6_4:3962502-3962521 Msa0971850:CDS 45.0%
TTTCTTGCCTGGTTACCATC+AGG + chr6_4:3962513-3962532 Msa0971850:CDS 45.0%
GTAATAGCCTGATGGTAACC+AGG - chr6_4:3962523-3962542 None:intergenic 45.0%
GGTTACCATCAGGCTATTAC+CGG + chr6_4:3962523-3962542 Msa0971850:CDS 45.0%
ATTCTCCGGTAATAGCCTGA+TGG - chr6_4:3962531-3962550 None:intergenic 45.0%
ATCAGGCTATTACCGGAGAA+TGG + chr6_4:3962530-3962549 Msa0971850:CDS 45.0%
ACTTAAGATGGCGCCTGAAT+TGG + chr6_4:3962687-3962706 Msa0971850:CDS 45.0%
AATTGGAGCTCAGTTTGAGG+AGG + chr6_4:3962717-3962736 Msa0971850:CDS 45.0%
TGCCTCTCACTGATAAGACA+AGG + chr6_4:3962785-3962804 Msa0971850:CDS 45.0%
GTTGCTGATGCTTGTTCTAG+TGG + chr6_4:3963083-3963102 Msa0971850:CDS 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG - chr6_4:3963233-3963252 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG - chr6_4:3963234-3963253 None:intergenic 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG - chr6_4:3963240-3963259 None:intergenic 45.0%
CAGCTCCAAAAGATCATCCA+TGG + chr6_4:3963238-3963257 Msa0971850:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG - chr6_4:3963246-3963265 None:intergenic 45.0%
AACTACCTGTGCATCAATGG+TGG - chr6_4:3963307-3963326 None:intergenic 45.0%
AGAGCATACATGCAAGTGTG+AGG - chr6_4:3963414-3963433 None:intergenic 45.0%
! ACGCCTACAATCTGAAGTGT+CGG - chr6_4:3963503-3963522 None:intergenic 45.0%
GTTCAGTTACGTTATGCTGC+TGG + chr6_4:3963884-3963903 Msa0971850:intron 45.0%
CATTGTGAAGGAGGGTCAAT+TGG + chr6_4:3963964-3963983 Msa0971850:intron 45.0%
GTCAATTGGCAAGCCAATAC+CGG + chr6_4:3963978-3963997 Msa0971850:intron 45.0%
GTTCTGACTTCTGAGTCTTG+TGG + chr6_4:3964022-3964041 Msa0971850:intron 45.0%
! GTCCAAAAGCATGGTGTCTT+TGG + chr6_4:3965448-3965467 Msa0971850:intron 45.0%
! TGCCAAAGACACCATGCTTT+TGG - chr6_4:3965453-3965472 None:intergenic 45.0%
TGGTGTCTTTGGCATCACAA+AGG + chr6_4:3965459-3965478 Msa0971850:intron 45.0%
CTGTATTTACGGATCACGCT+TGG - chr6_4:3965488-3965507 None:intergenic 45.0%
TATTGAGAATAGGCCTCTGG+AGG + chr6_4:3966427-3966446 Msa0971850:intron 45.0%
!! GGATGTGTTGAAGGAGCATT+AGG + chr6_4:3961989-3962008 Msa0971850:CDS 45.0%
GACAAAGAAGGACCTGATTC+TGG + chr6_4:3966589-3966608 Msa0971850:CDS 45.0%
GATATCAGGACATGCAGATC+AGG - chr6_4:3966718-3966737 None:intergenic 45.0%
!! TTGCTTTTAACTGCCGGCAT+TGG + chr6_4:3966799-3966818 Msa0971850:CDS 45.0%
CACAGGAAGCAACGTAGTAT+CGG + chr6_4:3966879-3966898 Msa0971850:CDS 45.0%
TTTCTTGCCTGGTTACAAGC+AGG + chr6_4:3966945-3966964 Msa0971850:CDS 45.0%
ACCAGCAACATTCCATTCTC+CGG - chr6_4:3966977-3966996 None:intergenic 45.0%
GATCTTGAAGGAAAGACGGT+TGG + chr6_4:3967015-3967034 Msa0971850:CDS 45.0%
! TCGGGAAGCTTTTACTCCAA+AGG + chr6_4:3967058-3967077 Msa0971850:CDS 45.0%
ACCTTGTCTTATCGGTGAGA+GGG - chr6_4:3967221-3967240 None:intergenic 45.0%
TACCTTGTCTTATCGGTGAG+AGG - chr6_4:3967222-3967241 None:intergenic 45.0%
GTTGCTGATGCTTGTACTAG+TGG + chr6_4:3967442-3967461 Msa0971850:CDS 45.0%
! TGTACTAGTGGACACATTGC+AGG + chr6_4:3967454-3967473 Msa0971850:CDS 45.0%
!!! GATCTTTTGGAGCTGGTTGT+GGG - chr6_4:3963233-3963252 None:intergenic 45.0%
!!! TGATCTTTTGGAGCTGGTTG+TGG - chr6_4:3963234-3963253 None:intergenic 45.0%
!!! CATGGATGATCTTTTGGAGC+TGG - chr6_4:3963240-3963259 None:intergenic 45.0%
CAGCTCCAAAAGATCATCCA+TGG + chr6_4:3963238-3963257 Msa0971850:CDS 45.0%
! TAGCGCCATGGATGATCTTT+TGG - chr6_4:3963246-3963265 None:intergenic 45.0%
GCGATGACTCCTCATATTTC+TGG + chr6_4:3967707-3967726 Msa0971850:CDS 45.0%
TGGAACTACCATTGATGCAC+AGG + chr6_4:3967727-3967746 Msa0971850:CDS 45.0%
AAGCATGTCACATGCAGATG+TGG + chr6_4:3967911-3967930 Msa0971850:intron 45.0%
AGTCAGCTCATCAGTGACAT+TGG - chr6_4:3968065-3968084 None:intergenic 45.0%
GTTCAGTTACGTTATGCTGC+TGG + chr6_4:3963884-3963903 Msa0971850:intron 45.0%
!! ATCGGTATTGGCTTGCCAAT+TGG - chr6_4:3968438-3968457 None:intergenic 45.0%
!!! TTTATCTTTTTTATTATTTT+TGG - chr6_4:3960247-3960266 None:intergenic 5.0%
!! CATTATAAATTTATAATATA+CGG - chr6_4:3960810-3960829 None:intergenic 5.0%
!!! TTAATTTTAAATTTTAAAAG+TGG - chr6_4:3960835-3960854 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAGTA+GGG - chr6_4:3961267-3961286 None:intergenic 5.0%
!! AATAATTTACTATAATAAAT+GGG - chr6_4:3961548-3961567 None:intergenic 5.0%
!!! TATATATATTAGTTTAATTA+CGG - chr6_4:3962130-3962149 None:intergenic 5.0%
!!! TGTTTTTTAATTTTTAAAAT+TGG + chr6_4:3965921-3965940 Msa0971850:intron 5.0%
AGCAAGAAAGGGAGAGGAGT+TGG + chr6_4:3959819-3959838 Msa0971850:five_prime_UTR 50.0%
AGAAAGGGAGAGGAGTTGGA+AGG + chr6_4:3959823-3959842 Msa0971850:five_prime_UTR 50.0%
GGAGAGGAGTTGGAAGGAAA+GGG + chr6_4:3959829-3959848 Msa0971850:five_prime_UTR 50.0%
CACCTTCTTCCATCATCACC+AGG + chr6_4:3960096-3960115 Msa0971850:CDS 50.0%
!! TCCCTGGTGATGATGGAAGA+AGG - chr6_4:3960101-3960120 None:intergenic 50.0%
! ATGAAGGTCCCTGGTGATGA+TGG - chr6_4:3960108-3960127 None:intergenic 50.0%
TGAGCTTACATGAAGGTCCC+TGG - chr6_4:3960117-3960136 None:intergenic 50.0%
CTGACATCGCGTGAATGTCA+CGG - chr6_4:3960349-3960368 None:intergenic 50.0%
CTACTGATGGAGACAAAGGG+TGG - chr6_4:3960376-3960395 None:intergenic 50.0%
TTTGGTCATTTCGCGTGACG+TGG - chr6_4:3961026-3961045 None:intergenic 50.0%
TGTTGAGAATAGGCCTCTGG+TGG + chr6_4:3961899-3961918 Msa0971850:intron 50.0%
GAGCATTAGGTATACGCGAG+TGG + chr6_4:3962002-3962021 Msa0971850:CDS 50.0%
GGAATGTGCTTCTCGAGTTC+TGG - chr6_4:3962265-3962284 None:intergenic 50.0%
ATAGGCAGGGTGAAATGGTG+TGG - chr6_4:3962308-3962327 None:intergenic 50.0%
GTGACATAGGCAGGGTGAAA+TGG - chr6_4:3962313-3962332 None:intergenic 50.0%
TTTCCGCAGTGACATAGGCA+GGG - chr6_4:3962321-3962340 None:intergenic 50.0%
TTAGAGCTGCTTCTAACCGC+CGG + chr6_4:3962361-3962380 Msa0971850:CDS 50.0%
!! TGCTGGTTTAACTGTCGCAG+AGG + chr6_4:3962423-3962442 Msa0971850:CDS 50.0%
TTAACTGTCGCAGAGGTCAC+AGG + chr6_4:3962430-3962449 Msa0971850:CDS 50.0%
CACAGGAAGCAACACTGTGT+CGG + chr6_4:3962447-3962466 Msa0971850:CDS 50.0%
ACCGGAGAATGGAATGTTGC+TGG + chr6_4:3962541-3962560 Msa0971850:CDS 50.0%
GCCAGCAACATTCCATTCTC+CGG - chr6_4:3962545-3962564 None:intergenic 50.0%
GGAAAGACAGTTGGAACGGT+CGG + chr6_4:3962592-3962611 Msa0971850:CDS 50.0%
CAACGCATGAATACAACGCG+TGG - chr6_4:3962940-3962959 None:intergenic 50.0%
! CAATGCTCGTGGAGCACTTA+TGG + chr6_4:3963049-3963068 Msa0971850:CDS 50.0%
! TGTTCTAGTGGACACGTTGC+AGG + chr6_4:3963095-3963114 Msa0971850:CDS 50.0%
TGATTAGGCATGTAGCGCCA+TGG - chr6_4:3963258-3963277 None:intergenic 50.0%
TGGAACCACCATTGATGCAC+AGG + chr6_4:3963299-3963318 Msa0971850:CDS 50.0%
! GCACCGACACTTCAGATTGT+AGG + chr6_4:3963497-3963516 Msa0971850:intron 50.0%
TGTGGGACATTCACACGTGT+CGG - chr6_4:3963528-3963547 None:intergenic 50.0%
! GCTGCTGCGAGCTATTCTTT+TGG - chr6_4:3964662-3964681 None:intergenic 50.0%
CATGTATGCGGACTTGACTG+TGG - chr6_4:3965750-3965769 None:intergenic 50.0%
GAGCATTAGGTATTCGCGAG+TGG + chr6_4:3966530-3966549 Msa0971850:CDS 50.0%
GGAATGTGCTTCTCGAGTTC+TGG - chr6_4:3962265-3962284 None:intergenic 50.0%
GTGACATAGGCAGGGTGAAA+TGG - chr6_4:3962313-3962332 None:intergenic 50.0%
TTTCCTCGGTGACATAGGCA+GGG - chr6_4:3966753-3966772 None:intergenic 50.0%
TCACATTGATCTCAACGCCG+CGG + chr6_4:3966828-3966847 Msa0971850:CDS 50.0%
!! CAACGTAGTATCGGTTGCTG+AGG + chr6_4:3966888-3966907 Msa0971850:CDS 50.0%
CTCGTGAGGAATTTCTTGCC+TGG + chr6_4:3966934-3966953 Msa0971850:CDS 50.0%
GGAAAGACGGTTGGAACAGT+TGG + chr6_4:3967024-3967043 Msa0971850:CDS 50.0%
!! ACAGTTGGTGCTGGACGAAT+CGG + chr6_4:3967039-3967058 Msa0971850:CDS 50.0%
CCTTGTCTTATCGGTGAGAG+GGG - chr6_4:3967220-3967239 None:intergenic 50.0%
TGAGGAGTCATCGCATGGTT+TGG - chr6_4:3967701-3967720 None:intergenic 50.0%
TGCATTCACGCGCTCATCTT+TGG + chr6_4:3967939-3967958 Msa0971850:intron 50.0%
ACGCGCTCATCTTTGGTCAT+TGG + chr6_4:3967946-3967965 Msa0971850:intron 50.0%
!! AAAGTATTGGGCGTGAGCTC+TGG + chr6_4:3968023-3968042 Msa0971850:intron 50.0%
!! TGAGAGGCACTTTAAGGGTG+AGG + chr6_4:3963922-3963941 Msa0971850:CDS 50.0%
CATTGTGAAGCAGGGCCAAT+TGG + chr6_4:3968420-3968439 Msa0971850:CDS 50.0%
GGGAGAGGAGTTGGAAGGAA+AGG + chr6_4:3959828-3959847 Msa0971850:five_prime_UTR 55.0%
GGGTAAAGCCTTCCTCACTC+AGG + chr6_4:3959849-3959868 Msa0971850:five_prime_UTR 55.0%
CGCGAGTGGTTGGAATCACA+AGG + chr6_4:3962016-3962035 Msa0971850:CDS 55.0%
TCACCCTGCCTATGTCACTG+CGG + chr6_4:3962315-3962334 Msa0971850:CDS 55.0%
CTTTCCGCAGTGACATAGGC+AGG - chr6_4:3962322-3962341 None:intergenic 55.0%
GTGATCAGAACCAATGCCGG+CGG - chr6_4:3962380-3962399 None:intergenic 55.0%
!! CAACACTGTGTCGGTTGCTG+AGG + chr6_4:3962456-3962475 Msa0971850:CDS 55.0%
CGCGAGTGGCTTGAATCACA+AGG + chr6_4:3966544-3966563 Msa0971850:CDS 55.0%
CTTTCCTCGGTGACATAGGC+AGG - chr6_4:3966754-3966773 None:intergenic 55.0%
!! TGCTGGTTTAACCGTCGCAG+AGG + chr6_4:3966855-3966874 Msa0971850:CDS 55.0%
TTAACCGTCGCAGAGGTCAC+AGG + chr6_4:3966862-3966881 Msa0971850:CDS 55.0%
GCAACAGCCTGCTTGTAACC+AGG - chr6_4:3966955-3966974 None:intergenic 55.0%
GGTTACAAGCAGGCTGTTGC+CGG + chr6_4:3966955-3966974 Msa0971850:CDS 55.0%
GCCGGAGAATGGAATGTTGC+TGG + chr6_4:3966973-3966992 Msa0971850:CDS 55.0%
! ACGGTTGGAACAGTTGGTGC+TGG + chr6_4:3967030-3967049 Msa0971850:CDS 55.0%
!! CAGTTGGTGCTGGACGAATC+GGG + chr6_4:3967040-3967059 Msa0971850:CDS 55.0%
CCCCTCTCACCGATAAGACA+AGG + chr6_4:3967217-3967236 Msa0971850:CDS 55.0%
CAATGCTCGTGGGGCGATTA+TGG + chr6_4:3967408-3967427 Msa0971850:CDS 55.0%
! TGGTTTGGCATGTAGCGCCA+TGG - chr6_4:3967686-3967705 None:intergenic 55.0%
CTGCTTCTAACCGCCGGCAT+TGG + chr6_4:3962367-3962386 Msa0971850:CDS 60.0%
ACAGTTGGAACGGTCGGTGC+TGG + chr6_4:3962598-3962617 Msa0971850:CDS 60.0%
!! ACGGTCGGTGCTGGACGAAT+TGG + chr6_4:3962607-3962626 Msa0971850:CDS 60.0%
!! CGGTCGGTGCTGGACGAATT+GGG + chr6_4:3962608-3962627 Msa0971850:CDS 60.0%
TCACCCTGCCTATGTCACCG+AGG + chr6_4:3966747-3966766 Msa0971850:CDS 60.0%
GGTTAAACCAGCAGCAGCCG+CGG - chr6_4:3966848-3966867 None:intergenic 60.0%
GCTTCCTGTGACCTCTGCGA+CGG - chr6_4:3962437-3962456 None:intergenic 60.0%
AGCAGGCTGTTGCCGGAGAA+TGG + chr6_4:3966962-3966981 Msa0971850:CDS 60.0%
CTCAATGCTGCGGCTGCTGC+TGG + chr6_4:3962406-3962425 Msa0971850:CDS 65.0%
CTCAACGCCGCGGCTGCTGC+TGG + chr6_4:3966838-3966857 Msa0971850:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 3959644 3968459 3959644 ID=Msa0971850;Name=Msa0971850
chr6_4 mRNA 3959644 3968459 3959644 ID=Msa0971850-mRNA-1;Parent=Msa0971850;Name=Msa0971850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=263|0.54|0.5|1|0.90|0.83|12|0|729
chr6_4 exon 3959644 3959870 3959644 ID=Msa0971850-mRNA-1:exon:1705;Parent=Msa0971850-mRNA-1
chr6_4 exon 3959996 3960127 3959996 ID=Msa0971850-mRNA-1:exon:1706;Parent=Msa0971850-mRNA-1
chr6_4 exon 3961911 3962082 3961911 ID=Msa0971850-mRNA-1:exon:1707;Parent=Msa0971850-mRNA-1
chr6_4 exon 3962266 3962806 3962266 ID=Msa0971850-mRNA-1:exon:1708;Parent=Msa0971850-mRNA-1
chr6_4 exon 3962992 3963116 3962992 ID=Msa0971850-mRNA-1:exon:1709;Parent=Msa0971850-mRNA-1
chr6_4 exon 3963208 3963320 3963208 ID=Msa0971850-mRNA-1:exon:1710;Parent=Msa0971850-mRNA-1
chr6_4 exon 3963890 3963967 3963890 ID=Msa0971850-mRNA-1:exon:1711;Parent=Msa0971850-mRNA-1
chr6_4 exon 3966439 3966610 3966439 ID=Msa0971850-mRNA-1:exon:1712;Parent=Msa0971850-mRNA-1
chr6_4 exon 3966698 3967238 3966698 ID=Msa0971850-mRNA-1:exon:1713;Parent=Msa0971850-mRNA-1
chr6_4 exon 3967351 3967475 3967351 ID=Msa0971850-mRNA-1:exon:1714;Parent=Msa0971850-mRNA-1
chr6_4 exon 3967636 3967748 3967636 ID=Msa0971850-mRNA-1:exon:1715;Parent=Msa0971850-mRNA-1
chr6_4 exon 3968346 3968459 3968346 ID=Msa0971850-mRNA-1:exon:1716;Parent=Msa0971850-mRNA-1
chr6_4 five_prime_UTR 3959644 3959870 3959644 ID=Msa0971850-mRNA-1:five_prime_utr;Parent=Msa0971850-mRNA-1
chr6_4 five_prime_UTR 3959996 3960031 3959996 ID=Msa0971850-mRNA-1:five_prime_utr;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3960032 3960127 3960032 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3961911 3962082 3961911 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3962266 3962806 3962266 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3962992 3963116 3962992 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3963208 3963320 3963208 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3963890 3963967 3963890 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3966439 3966610 3966439 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3966698 3967238 3966698 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3967351 3967475 3967351 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3967636 3967748 3967636 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
chr6_4 CDS 3968346 3968459 3968346 ID=Msa0971850-mRNA-1:cds;Parent=Msa0971850-mRNA-1
Gene Sequence

>Msa0971850

ATGGCTATGAAACGTGCTGCTTCAACCTTGATCACTGCTTCTTCAAAGATTTCATCACTTTCTTCACCTTCTTCCATCATCACCAGGGACCTTCATGCCTCTGGTGGAAAGAAGAAGATTGTAGGTGTGTTCTACAAAGGCGGTGAATATGCTTCCTTGAATCCCAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATACGCGAGTGGTTGGAATCACAAGGACATGAGTACATTGTCACTGATGACAAAGAAGGACTCAATTCTGAACTCGAGAAGCACATTCCTGATCTCAATGTCCTGATATCCACACCATTTCACCCTGCCTATGTCACTGCGGAAAGAATTAAGAAAGCTAAGAATTTAGAGCTGCTTCTAACCGCCGGCATTGGTTCTGATCACATTGATCTCAATGCTGCGGCTGCTGCTGGTTTAACTGTCGCAGAGGTCACAGGAAGCAACACTGTGTCGGTTGCTGAGGATGAGCTCATGAGAATTCTCATTCTTGTGAGGAATTTCTTGCCTGGTTACCATCAGGCTATTACCGGAGAATGGAATGTTGCTGGCATTGCACATAGAGCCTATGATCTTGAAGGAAAGACAGTTGGAACGGTCGGTGCTGGACGAATTGGGAAACTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCACGATAGACTTAAGATGGCGCCTGAATTGGAGAAAGAAATTGGAGCTCAGTTTGAGGAGGATCTTGATGCAATGCTTCCGAAGTGCGACATTATTGTTATGAACATGCCTCTCACTGATAAGACAAGAGGATTGTTTGACAAAAATAGAATTGCTAAGTTGAAGAAAGGTGTCTTGATTGTCAACAATGCTCGTGGAGCACTTATGGATACACAAGCAGTTGCTGATGCTTGTTCTAGTGGACACGTTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCTAATCATGCTATGACTCCTCATATTTCTGGAACCACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAAGACTTTCCTGAACAGAACTACATTGCCTCTGGAGGAAAGAAGAAAATTGTAGGTGTGTTCTACAAAGGAAATGAGAATGCTGCATCCAATCCTAATTTTGTTGGATGTGTTGAAGGAGCATTAGGTATTCGCGAGTGGCTTGAATCACAAGGACATGAATACATTGTCACAGATGACAAAGAAGGACCTGATTCTGAACTCGAGAAGCACATTCCTGATCTGCATGTCCTGATATCTACACCATTTCACCCTGCCTATGTCACCGAGGAAAGAATTAAGAAAGCGAAGAATTTACAGTTGCTTTTAACTGCCGGCATTGGTTCTGATCACATTGATCTCAACGCCGCGGCTGCTGCTGGTTTAACCGTCGCAGAGGTCACAGGAAGCAACGTAGTATCGGTTGCTGAGGATGAGCTTATGAGAATTCTCATTCTCGTGAGGAATTTCTTGCCTGGTTACAAGCAGGCTGTTGCCGGAGAATGGAATGTTGCTGGTATTGCACATAGAGCCTATGATCTTGAAGGAAAGACGGTTGGAACAGTTGGTGCTGGACGAATCGGGAAGCTTTTACTCCAAAGGCTGAAACCCTTTAACTGTAACCTTTTATATCATGATAGACTTAAGATGGAGCCTGAATTGGAGAAAGAAATTGGAGCTAAGTTTGAGGACGACCTTGATACAATGCTACCAAAGTGCGACATAGTTGTTATTAACACCCCTCTCACCGATAAGACAAGAGGATTGTTTGACAAAAATAGAATCGCTAAGTTGAAGAAAGGCGTCTTGATTGTTAACAATGCTCGTGGGGCGATTATGGACACACAAGCAGTTGCTGATGCTTGTACTAGTGGACACATTGCAGGTTACAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAAGATCATCCATGGCGCTACATGCCAAACCATGCGATGACTCCTCATATTTCTGGAACTACCATTGATGCACAGTTACGTTATGCTGCTGGAGTCAAAGATATGCTTGAGAGGCACTTTAAGGGTGAGGACTTTCCTGAACAGCATTACATTGTGAAGCAGGGCCAATTGGCAAGCCAATACCGATGA
Protein sequence

>Msa0971850

MAMKRAASTLITASSKISSLSSPSSIITRDLHASGGKKKIVGVFYKGGEYASLNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGLNSELEKHIPDLNVLISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMAPELEKEIGAQFEEDLDAMLPKCDIIVMNMPLTDKTRGLFDKNRIAKLKKGVLIVNNARGALMDTQAVADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQNYIASGGKKKIVGVFYKGNENAASNPNFVGCVEGALGIREWLESQGHEYIVTDDKEGPDSELEKHIPDLHVLISTPFHPAYVTEERIKKAKNLQLLLTAGIGSDHIDLNAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYKQAVAGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMEPELEKEIGAKFEDDLDTMLPKCDIVVINTPLTDKTRGLFDKNRIAKLKKGVLIVNNARGAIMDTQAVADACTSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLERHFKGEDFPEQHYIVKQGQLASQYR*