Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246250 | XP_003595308.1 | 99.411 | 509 | 3 | 0 | 68 | 576 | 1 | 509 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246250 | sp|P25795|AL7A1_PEA | 89.587 | 509 | 52 | 1 | 68 | 576 | 1 | 508 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246250 | G7IGF7 | 99.411 | 509 | 3 | 0 | 68 | 576 | 1 | 509 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa0246250 | 0.812213 | 4.748111e-51 | -8.615850e-47 |
| Msa0034970 | Msa0246250 | 0.801600 | 8.342182e-49 | -8.615850e-47 |
| Msa0047460 | Msa0246250 | 0.802161 | 6.398199e-49 | -8.615850e-47 |
| Msa0065950 | Msa0246250 | 0.814272 | 1.676719e-51 | -8.615850e-47 |
| Msa0175840 | Msa0246250 | 0.819065 | 1.412123e-52 | -8.615850e-47 |
| Msa0191440 | Msa0246250 | 0.827466 | 1.540666e-54 | -8.615850e-47 |
| Msa0203110 | Msa0246250 | 0.885466 | 7.935358e-72 | -8.615850e-47 |
| Msa0210470 | Msa0246250 | 0.806108 | 9.654520e-50 | -8.615850e-47 |
| Msa0246250 | Msa0246260 | 0.822306 | 2.542391e-53 | -8.615850e-47 |
| Msa0246250 | Msa0255930 | 0.815855 | 7.462945e-52 | -8.615850e-47 |
| Msa0246250 | Msa0284820 | 0.838750 | 2.388107e-57 | -8.615850e-47 |
| Msa0246250 | Msa0323560 | 0.843080 | 1.745211e-58 | -8.615850e-47 |
| Msa0246250 | Msa0469990 | 0.825255 | 5.177876e-54 | -8.615850e-47 |
| Msa0246250 | Msa0485340 | 0.807073 | 6.040207e-50 | -8.615850e-47 |
| Msa0246250 | Msa0534010 | 0.818095 | 2.344412e-52 | -8.615850e-47 |
| Msa0246250 | Msa0588240 | 0.827477 | 1.531235e-54 | -8.615850e-47 |
| Msa0246250 | Msa0590020 | 0.811909 | 5.531191e-51 | -8.615850e-47 |
| Msa0246250 | Msa0628740 | 0.829744 | 4.337585e-55 | -8.615850e-47 |
| Msa0246250 | Msa0666140 | 0.831343 | 1.761226e-55 | -8.615850e-47 |
| Msa0246250 | Msa0701100 | 0.803065 | 4.163669e-49 | -8.615850e-47 |
| Msa0246250 | Msa0724780 | 0.840242 | 9.785674e-58 | -8.615850e-47 |
| Msa0246250 | Msa0732880 | 0.802594 | 5.210604e-49 | -8.615850e-47 |
| Msa0246250 | Msa0756060 | 0.804449 | 2.148625e-49 | -8.615850e-47 |
| Msa0246250 | Msa0844830 | 0.811447 | 6.970521e-51 | -8.615850e-47 |
| Msa0246250 | Msa0872440 | 0.819765 | 9.779038e-53 | -8.615850e-47 |
| Msa0246250 | Msa0930140 | 0.804307 | 2.300462e-49 | -8.615850e-47 |
| Msa0246250 | Msa0934840 | 0.807274 | 5.475595e-50 | -8.615850e-47 |
| Msa0246250 | Msa0942070 | 0.809920 | 1.490383e-50 | -8.615850e-47 |
| Msa0246250 | Msa1006710 | 0.810629 | 1.047961e-50 | -8.615850e-47 |
| Msa0246250 | Msa1023180 | 0.807180 | 5.733800e-50 | -8.615850e-47 |
| Msa0246250 | Msa1043050 | 0.804109 | 2.529159e-49 | -8.615850e-47 |
| Msa0246250 | Msa1150710 | 0.812285 | 4.577421e-51 | -8.615850e-47 |
| Msa0246250 | Msa1190930 | 0.824261 | 8.884883e-54 | -8.615850e-47 |
| Msa0246250 | Msa1206100 | 0.812623 | 3.862471e-51 | -8.615850e-47 |
| Msa0246250 | Msa1216310 | 0.803281 | 3.756626e-49 | -8.615850e-47 |
| Msa0246250 | Msa1244610 | 0.812609 | 3.889515e-51 | -8.615850e-47 |
| Msa0246250 | Msa1329550 | 0.812860 | 3.427970e-51 | -8.615850e-47 |
| Msa0246250 | Msa1440190 | 0.815668 | 8.214661e-52 | -8.615850e-47 |
| Msa0246250 | Msa1449750 | 0.816677 | 4.888057e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246250 | MtrunA17_Chr2g0300801 | 99.411 | 509 | 3 | 0 | 68 | 576 | 1 | 509 | 0.0 | 1035 |
| Msa0246250 | MtrunA17_Chr2g0310091 | 29.379 | 531 | 343 | 11 | 36 | 554 | 14 | 524 | 3.98e-67 | 227 |
| Msa0246250 | MtrunA17_Chr8g0365221 | 30.444 | 473 | 310 | 11 | 90 | 555 | 67 | 527 | 8.20e-58 | 202 |
| Msa0246250 | MtrunA17_Chr8g0390651 | 30.103 | 485 | 320 | 13 | 91 | 565 | 25 | 500 | 9.26e-57 | 198 |
| Msa0246250 | MtrunA17_Chr3g0117861 | 29.684 | 475 | 312 | 11 | 92 | 555 | 65 | 528 | 2.57e-54 | 192 |
| Msa0246250 | MtrunA17_Chr3g0118121 | 29.375 | 480 | 312 | 11 | 92 | 554 | 11 | 480 | 5.56e-54 | 191 |
| Msa0246250 | MtrunA17_Chr4g0059221 | 29.474 | 475 | 313 | 12 | 92 | 555 | 67 | 530 | 4.40e-53 | 189 |
| Msa0246250 | MtrunA17_Chr4g0059521 | 30.140 | 501 | 308 | 14 | 92 | 568 | 11 | 493 | 1.68e-51 | 184 |
| Msa0246250 | MtrunA17_Chr3g0118081 | 28.750 | 480 | 315 | 11 | 92 | 554 | 41 | 510 | 2.00e-51 | 184 |
| Msa0246250 | MtrunA17_Chr8g0390631 | 27.835 | 485 | 329 | 14 | 92 | 565 | 17 | 491 | 2.23e-50 | 181 |
| Msa0246250 | MtrunA17_Chr6g0485301 | 27.835 | 485 | 329 | 14 | 92 | 565 | 25 | 499 | 4.10e-48 | 175 |
| Msa0246250 | MtrunA17_Chr6g0485311 | 28.157 | 483 | 330 | 12 | 92 | 565 | 23 | 497 | 1.91e-46 | 170 |
| Msa0246250 | MtrunA17_Chr4g0049641 | 26.087 | 460 | 322 | 7 | 92 | 542 | 45 | 495 | 3.90e-38 | 147 |
| Msa0246250 | MtrunA17_Chr2g0279751 | 25.417 | 480 | 333 | 8 | 70 | 542 | 7 | 468 | 3.23e-37 | 144 |
| Msa0246250 | MtrunA17_Chr4g0074171 | 24.280 | 486 | 342 | 14 | 92 | 565 | 19 | 490 | 6.70e-30 | 123 |
| Msa0246250 | MtrunA17_Chr1g0149961 | 24.174 | 484 | 339 | 14 | 92 | 562 | 19 | 487 | 2.81e-29 | 121 |
| Msa0246250 | MtrunA17_Chr2g0294411 | 23.617 | 470 | 335 | 9 | 94 | 548 | 56 | 516 | 3.20e-28 | 119 |
| Msa0246250 | MtrunA17_Chr8g0372381 | 27.350 | 351 | 227 | 13 | 222 | 559 | 109 | 444 | 2.97e-19 | 90.9 |
| Msa0246250 | MtrunA17_Chr2g0328781 | 26.062 | 353 | 240 | 9 | 219 | 560 | 117 | 459 | 2.34e-18 | 88.2 |
| Msa0246250 | MtrunA17_Chr1g0159811 | 24.823 | 282 | 197 | 7 | 222 | 499 | 116 | 386 | 4.11e-18 | 87.4 |
| Msa0246250 | MtrunA17_Chr8g0384741 | 21.965 | 346 | 250 | 8 | 219 | 558 | 166 | 497 | 1.16e-14 | 77.0 |
| Msa0246250 | MtrunA17_Chr3g0124811 | 23.973 | 292 | 205 | 8 | 219 | 506 | 115 | 393 | 1.74e-13 | 73.2 |
| Msa0246250 | MtrunA17_Chr4g0032441 | 26.224 | 286 | 197 | 9 | 219 | 499 | 102 | 378 | 2.15e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0246250 | AT1G54100.2 | 79.568 | 509 | 103 | 1 | 68 | 576 | 1 | 508 | 0.0 | 852 |
| Msa0246250 | AT1G54100.1 | 79.568 | 509 | 103 | 1 | 68 | 576 | 1 | 508 | 0.0 | 852 |
| Msa0246250 | AT1G79440.1 | 29.423 | 503 | 338 | 7 | 58 | 554 | 24 | 515 | 3.71e-60 | 209 |
| Msa0246250 | AT1G23800.1 | 30.258 | 466 | 303 | 12 | 100 | 555 | 67 | 520 | 1.60e-55 | 196 |
| Msa0246250 | AT1G74920.1 | 28.226 | 496 | 324 | 12 | 92 | 568 | 11 | 493 | 4.43e-55 | 194 |
| Msa0246250 | AT3G24503.1 | 27.406 | 478 | 332 | 9 | 92 | 561 | 23 | 493 | 1.18e-54 | 193 |
| Msa0246250 | AT1G74920.2 | 28.106 | 491 | 326 | 11 | 92 | 568 | 11 | 488 | 4.12e-54 | 191 |
| Msa0246250 | AT3G48000.1 | 28.481 | 474 | 319 | 11 | 92 | 555 | 61 | 524 | 1.03e-51 | 186 |
| Msa0246250 | AT3G48170.1 | 28.340 | 494 | 326 | 12 | 92 | 568 | 11 | 493 | 1.82e-50 | 182 |
| Msa0246250 | AT2G14170.2 | 25.105 | 474 | 333 | 8 | 90 | 552 | 11 | 473 | 2.71e-36 | 142 |
| Msa0246250 | AT2G14170.3 | 25.054 | 459 | 327 | 7 | 90 | 542 | 120 | 567 | 5.93e-36 | 142 |
| Msa0246250 | AT2G14170.1 | 25.105 | 474 | 333 | 8 | 90 | 552 | 120 | 582 | 7.22e-36 | 142 |
| Msa0246250 | AT1G23800.2 | 28.923 | 325 | 218 | 7 | 90 | 409 | 60 | 376 | 1.96e-34 | 135 |
| Msa0246250 | AT2G24270.2 | 24.380 | 484 | 338 | 13 | 92 | 562 | 59 | 527 | 8.96e-32 | 129 |
| Msa0246250 | AT2G24270.3 | 24.280 | 486 | 336 | 13 | 92 | 562 | 19 | 487 | 1.22e-31 | 129 |
| Msa0246250 | AT2G24270.1 | 24.280 | 486 | 336 | 13 | 92 | 562 | 19 | 487 | 1.22e-31 | 129 |
| Msa0246250 | AT2G24270.4 | 24.280 | 486 | 336 | 13 | 92 | 562 | 19 | 487 | 1.44e-31 | 128 |
| Msa0246250 | AT3G66658.1 | 23.529 | 527 | 361 | 14 | 41 | 546 | 9 | 514 | 2.02e-30 | 125 |
| Msa0246250 | AT3G66658.2 | 23.529 | 527 | 361 | 14 | 41 | 546 | 9 | 514 | 2.24e-30 | 126 |
| Msa0246250 | AT1G44170.3 | 25.073 | 343 | 245 | 8 | 219 | 559 | 46 | 378 | 7.03e-22 | 99.0 |
| Msa0246250 | AT1G44170.1 | 25.073 | 343 | 245 | 8 | 219 | 559 | 109 | 441 | 1.08e-21 | 99.0 |
| Msa0246250 | AT1G44170.2 | 25.073 | 343 | 245 | 8 | 219 | 559 | 109 | 441 | 1.08e-21 | 99.0 |
| Msa0246250 | AT4G36250.1 | 26.761 | 284 | 192 | 10 | 221 | 498 | 107 | 380 | 4.03e-17 | 84.7 |
| Msa0246250 | AT4G34240.3 | 24.566 | 346 | 237 | 10 | 219 | 556 | 30 | 359 | 2.35e-16 | 82.0 |
| Msa0246250 | AT4G34240.1 | 24.566 | 346 | 237 | 10 | 219 | 556 | 172 | 501 | 4.38e-16 | 82.0 |
| Msa0246250 | AT4G34240.4 | 26.481 | 287 | 190 | 8 | 219 | 498 | 157 | 429 | 7.33e-16 | 81.3 |
Find 157 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGGTTTCAAGAAAA+TGG | 0.081139 | 2_2:+27308557 | Msa0246250:CDS |
| CATCATTATCATCATCAATT+TGG | 0.125228 | 2_2:+27308542 | Msa0246250:CDS |
| CCTTACAATTTCACCTCTTT+TGG | 0.126898 | 2_2:-27309487 | None:intergenic |
| CTTTACAAACAAGTCAAAAT+TGG | 0.151745 | 2_2:+27312985 | Msa0246250:CDS |
| TCTCTATGTTATGAAATTTC+AGG | 0.212346 | 2_2:+27313381 | Msa0246250:CDS |
| TTATTAGGAAATAAGAATTT+TGG | 0.227787 | 2_2:-27314231 | None:intergenic |
| AACTTTCCATGTGCTGTTCT+AGG | 0.237475 | 2_2:+27311028 | Msa0246250:CDS |
| TTCTGTGGAGGTGCTGATAT+TGG | 0.243412 | 2_2:+27312198 | Msa0246250:CDS |
| GGATGCATTGAGGGCTAAAT+TGG | 0.262115 | 2_2:+27309518 | Msa0246250:CDS |
| AAGATTTGGCAAATGCTTAC+TGG | 0.283996 | 2_2:+27312695 | Msa0246250:CDS |
| TTGTGCAGTACCATCAATTA+TGG | 0.318377 | 2_2:+27314012 | Msa0246250:intron |
| ATCATTATCATCATCAATTT+GGG | 0.319178 | 2_2:+27308543 | Msa0246250:CDS |
| GTGAAATTGTAAGGCAGATT+GGG | 0.324044 | 2_2:+27309496 | Msa0246250:CDS |
| AGAAACTACCTTTGAGCTTC+CGG | 0.329864 | 2_2:-27312265 | None:intergenic |
| TCTGTGGAGGTGCTGATATT+GGG | 0.339511 | 2_2:+27312199 | Msa0246250:CDS |
| TGGAGAAAGGGACTCTGGTT+GGG | 0.353211 | 2_2:+27313016 | Msa0246250:CDS |
| AAGTTTATTCCCTGAGCTAA+TGG | 0.354061 | 2_2:-27314045 | None:intergenic |
| AAATTCTCGCAGAAGGAATT+GGG | 0.364193 | 2_2:+27309577 | Msa0246250:CDS |
| CCAATCTCAGCTCCGTTTGT+TGG | 0.364750 | 2_2:-27313788 | None:intergenic |
| AATTGAATATCATCTTAATC+TGG | 0.368913 | 2_2:+27314361 | Msa0246250:three_prime_UTR |
| CAGGGTGGGAAGATCCTAAC+AGG | 0.369090 | 2_2:+27313259 | Msa0246250:intron |
| GCAGAAATCTCAACAATTGT+TGG | 0.370966 | 2_2:-27313319 | None:intergenic |
| ATTCCACTGGTTTCATTTAC+CGG | 0.373631 | 2_2:+27312246 | Msa0246250:CDS |
| AAAATTCTCGCAGAAGGAAT+TGG | 0.378286 | 2_2:+27309576 | Msa0246250:CDS |
| ACTGGTGGTGGTCGCGAAGC+AGG | 0.378755 | 2_2:+27313836 | Msa0246250:CDS |
| TGTTAATCCTTCCACCAATC+AGG | 0.381526 | 2_2:+27308692 | Msa0246250:CDS |
| TCTCATCATCTTTATGTGTA+AGG | 0.381551 | 2_2:-27314076 | None:intergenic |
| AAAACAGTGAATGAAAGATT+TGG | 0.393915 | 2_2:+27312681 | Msa0246250:CDS |
| GCTGAGATTGGAGGAGCCTT+TGG | 0.397329 | 2_2:+27313800 | Msa0246250:CDS |
| AAAAGCAACGTATATAGATA+TGG | 0.407040 | 2_2:+27308352 | Msa0246250:five_prime_UTR |
| TAGGTTGGTGGCTCTTGAGA+TGG | 0.414330 | 2_2:+27309551 | Msa0246250:CDS |
| AATTTGGGTTTCAAGAAAAT+GGG | 0.417027 | 2_2:+27308558 | Msa0246250:CDS |
| ATCCATTTGAATATAGTATC+AGG | 0.417304 | 2_2:-27313559 | None:intergenic |
| CTGGAGAAAGGGACTCTGGT+TGG | 0.420243 | 2_2:+27313015 | Msa0246250:CDS |
| TTTGACTTGTTTGTAAAGTC+CGG | 0.424516 | 2_2:-27312980 | None:intergenic |
| TTTACAAACAAGTCAAAATT+GGG | 0.425065 | 2_2:+27312986 | Msa0246250:CDS |
| CAACCAGAGTCCCTTTCTCC+AGG | 0.434562 | 2_2:-27313014 | None:intergenic |
| CTGGTTGACATGGGCTCAAA+TGG | 0.435168 | 2_2:+27314113 | Msa0246250:three_prime_UTR |
| GCAGATTGGGGATGCATTGA+GGG | 0.436038 | 2_2:+27309509 | Msa0246250:CDS |
| GGTGAAATTGTAAGGCAGAT+TGG | 0.437994 | 2_2:+27309495 | Msa0246250:CDS |
| AACAAATATCCAATAAATTG+AGG | 0.441807 | 2_2:+27314207 | Msa0246250:three_prime_UTR |
| CCAACAAACGGAGCTGAGAT+TGG | 0.443384 | 2_2:+27313788 | Msa0246250:CDS |
| GCGAAGCAGGGAGTGACTCT+TGG | 0.447045 | 2_2:+27313849 | Msa0246250:CDS |
| AACAAGATATGTTGTAAAAG+TGG | 0.450167 | 2_2:+27314143 | Msa0246250:three_prime_UTR |
| TTTGCAGCAGTCGGTACTGC+TGG | 0.452747 | 2_2:+27312789 | Msa0246250:CDS |
| TAATTGATCCATTCAATTGT+CGG | 0.454264 | 2_2:-27310663 | None:intergenic |
| ATAATCTATCACAGTTGCTT+CGG | 0.459165 | 2_2:-27309292 | None:intergenic |
| AGAAGGAATTGGGGAAGTTC+AGG | 0.462126 | 2_2:+27309587 | Msa0246250:CDS |
| ATAGTTATCAATGGTGTAGT+TGG | 0.463464 | 2_2:-27312108 | None:intergenic |
| GGATGATGCAGATATAAAAC+TGG | 0.464893 | 2_2:+27312749 | Msa0246250:CDS |
| CCAAAAGAGGTGAAATTGTA+AGG | 0.470463 | 2_2:+27309487 | Msa0246250:CDS |
| TAGTTCACTTCCATAATTGA+TGG | 0.472380 | 2_2:-27314022 | None:intergenic |
| TTAGCTCAGGGAATAAACTT+TGG | 0.478425 | 2_2:+27314048 | Msa0246250:CDS |
| GAGGGCTAAATTGGATCCGC+TGG | 0.479988 | 2_2:+27309527 | Msa0246250:CDS |
| CTTGAGAGGAACAAATTACC+TGG | 0.480253 | 2_2:+27312159 | Msa0246250:CDS |
| CATTGCAGCGATAAAATCTC+AGG | 0.481438 | 2_2:+27313080 | Msa0246250:CDS |
| ACCTCGTCCGTCTCAAAAGT+GGG | 0.483525 | 2_2:+27308406 | Msa0246250:CDS |
| AGGAGCCTTTGGTGGAGAAA+AGG | 0.484146 | 2_2:+27313811 | Msa0246250:CDS |
| ACAAATATCCAATAAATTGA+GGG | 0.485525 | 2_2:+27314208 | Msa0246250:three_prime_UTR |
| TTGGGAATCCCCTGGAGAAA+GGG | 0.486632 | 2_2:+27313004 | Msa0246250:CDS |
| AACATCGGTTGTTTCATCAA+TGG | 0.487652 | 2_2:+27308636 | Msa0246250:CDS |
| ATACTATATTCAAATGGATC+GGG | 0.489586 | 2_2:+27313563 | Msa0246250:CDS |
| AAGTGAACTACCATTAGCTC+AGG | 0.491818 | 2_2:+27314035 | Msa0246250:CDS |
| AAAGTGGTACCTTGACTTGA+TGG | 0.491879 | 2_2:+27314159 | Msa0246250:three_prime_UTR |
| TCCGTGGAAAACTTCAAGAA+AGG | 0.492949 | 2_2:+27313057 | Msa0246250:CDS |
| ATTGGGAATCCCCTGGAGAA+AGG | 0.493818 | 2_2:+27313003 | Msa0246250:CDS |
| GTGCACAACCTGCCGTAGAC+TGG | 0.494047 | 2_2:+27312818 | Msa0246250:CDS |
| TCCTGATCATATGATGTTTG+AGG | 0.494992 | 2_2:+27310870 | Msa0246250:CDS |
| GTAATAGCAATAGTTATCAA+TGG | 0.495315 | 2_2:-27312117 | None:intergenic |
| GAATTTACTCTCTAGAAAGC+AGG | 0.496700 | 2_2:+27314334 | Msa0246250:three_prime_UTR |
| GACCTGATACTATATTCAAA+TGG | 0.499886 | 2_2:+27313557 | Msa0246250:CDS |
| GATACTATATTCAAATGGAT+CGG | 0.500218 | 2_2:+27313562 | Msa0246250:CDS |
| GATATGTGTGATTACGCTGT+TGG | 0.500618 | 2_2:+27310634 | Msa0246250:CDS |
| TGTTGTTGTTATTATAGTCA+CGG | 0.501382 | 2_2:-27308469 | None:intergenic |
| ATCAGCACCTCCACAGAAAG+AGG | 0.501431 | 2_2:-27312193 | None:intergenic |
| ATATGTGTGATTACGCTGTT+GGG | 0.501879 | 2_2:+27310635 | Msa0246250:CDS |
| ACCTCAAACATCATATGATC+AGG | 0.502856 | 2_2:-27310871 | None:intergenic |
| AATGTACTAGATCAACTTGC+CGG | 0.509920 | 2_2:+27312961 | Msa0246250:CDS |
| GGGCTAAGCCGACAATTGAA+TGG | 0.514118 | 2_2:+27310655 | Msa0246250:CDS |
| CCACGGAAGAACGAGTATGA+AGG | 0.517238 | 2_2:-27313041 | None:intergenic |
| TCCCCTGGAGAAAGGGACTC+TGG | 0.518205 | 2_2:+27313011 | Msa0246250:CDS |
| TTTGGTGGAGAAAAGGCAAC+TGG | 0.521029 | 2_2:+27313818 | Msa0246250:CDS |
| GTTCCTGTTGTAGGTGGGCG+CGG | 0.523007 | 2_2:+27312650 | Msa0246250:intron |
| TTGAGGAACAGAATTGTTCA+AGG | 0.525114 | 2_2:-27313506 | None:intergenic |
| TCTGTGGTAACTGTGTAGTC+TGG | 0.526351 | 2_2:+27311241 | Msa0246250:CDS |
| CCTTCATACTCGTTCTTCCG+TGG | 0.528090 | 2_2:+27313041 | Msa0246250:CDS |
| GCAATATTCACCTCTTTCTG+TGG | 0.528168 | 2_2:+27312183 | Msa0246250:CDS |
| CTGGTGGTGGTCGCGAAGCA+GGG | 0.530246 | 2_2:+27313837 | Msa0246250:CDS |
| GGATCCGCTGGGTAGGTTGG+TGG | 0.530374 | 2_2:+27309539 | Msa0246250:CDS |
| ACTCACAGTCATCCATGTCT+TGG | 0.531057 | 2_2:-27309346 | None:intergenic |
| ATTGGATCCGCTGGGTAGGT+TGG | 0.531254 | 2_2:+27309536 | Msa0246250:CDS |
| CACCTCGTCCGTCTCAAAAG+TGG | 0.532160 | 2_2:+27308405 | Msa0246250:CDS |
| GGAGAAAAGGCAACTGGTGG+TGG | 0.532581 | 2_2:+27313824 | Msa0246250:CDS |
| AATTTCATAACATAGAGAAC+TGG | 0.535713 | 2_2:-27313376 | None:intergenic |
| TCACGGTTTGAGATTGAGAC+AGG | 0.536647 | 2_2:-27308452 | None:intergenic |
| ATATTCACCTCTTTCTGTGG+AGG | 0.543993 | 2_2:+27312186 | Msa0246250:CDS |
| TTCTGATCAGAGTAACAACT+TGG | 0.544227 | 2_2:+27308581 | Msa0246250:CDS |
| AGGTTGGTGGCTCTTGAGAT+GGG | 0.544710 | 2_2:+27309552 | Msa0246250:CDS |
| AATACATGCGCCGTTCTACA+TGG | 0.549170 | 2_2:+27313876 | Msa0246250:CDS |
| ATACCACAATCACTCCCTCT+TGG | 0.550016 | 2_2:-27313749 | None:intergenic |
| AATGTGAACATACCAACAAA+CGG | 0.551014 | 2_2:+27313776 | Msa0246250:CDS |
| CAGATTCCGGCACCCAAAAG+AGG | 0.551019 | 2_2:+27309474 | Msa0246250:intron |
| TGGAACCCACTAGGAATAGT+TGG | 0.551488 | 2_2:+27310989 | Msa0246250:CDS |
| GGCAGATTGGGGATGCATTG+AGG | 0.552475 | 2_2:+27309508 | Msa0246250:CDS |
| TTCATTTACCGGAAGCTCAA+AGG | 0.556283 | 2_2:+27312257 | Msa0246250:CDS |
| GAGATTGGAGGAGCCTTTGG+TGG | 0.556315 | 2_2:+27313803 | Msa0246250:CDS |
| TAACAATGCAATTATAGTCA+TGG | 0.559286 | 2_2:+27312728 | Msa0246250:CDS |
| AGAAGTAACAGAAGAACCAT+TGG | 0.561622 | 2_2:-27308670 | None:intergenic |
| CACGGAAGAACGAGTATGAA+GGG | 0.563661 | 2_2:-27313040 | None:intergenic |
| AGTCAAAATTGGGAATCCCC+TGG | 0.565106 | 2_2:+27312996 | Msa0246250:CDS |
| AACCAGAGTCCCTTTCTCCA+GGG | 0.572658 | 2_2:-27313013 | None:intergenic |
| ACTGTGATAGATTATGAAGA+GGG | 0.573021 | 2_2:+27309300 | Msa0246250:CDS |
| ACCAGAGTCCCTTTCTCCAG+GGG | 0.578504 | 2_2:-27313012 | None:intergenic |
| GTAGTGAAGCAGCCAAGACA+TGG | 0.580803 | 2_2:+27309334 | Msa0246250:CDS |
| AGGCCAAGAGGGAGTGATTG+TGG | 0.581330 | 2_2:+27313746 | Msa0246250:intron |
| TGGAGGTGCTGATATTGGGC+AGG | 0.585282 | 2_2:+27312203 | Msa0246250:CDS |
| GGTGGGAAGATCCTAACAGG+GGG | 0.585739 | 2_2:+27313262 | Msa0246250:CDS |
| GATTGCCGTGCAGGCCAAGA+GGG | 0.588339 | 2_2:+27313735 | Msa0246250:intron |
| CTAAATTGGATCCGCTGGGT+AGG | 0.592095 | 2_2:+27309532 | Msa0246250:CDS |
| TTGAACAATTCTGTTCCTCA+AGG | 0.593286 | 2_2:+27313508 | Msa0246250:CDS |
| GAAAGACAGACGCATTCCAC+TGG | 0.593570 | 2_2:+27312233 | Msa0246250:CDS |
| TTGAGAGGAACAAATTACCT+GGG | 0.594093 | 2_2:+27312160 | Msa0246250:CDS |
| TGAAATTGTAAGGCAGATTG+GGG | 0.597103 | 2_2:+27309497 | Msa0246250:CDS |
| GGTTTAGGTTCAACTAACAT+CGG | 0.598208 | 2_2:+27308621 | Msa0246250:CDS |
| CTACAGGTATGGAACCCACT+AGG | 0.600107 | 2_2:+27310980 | Msa0246250:intron |
| ACAAACGGAGCTGAGATTGG+AGG | 0.600588 | 2_2:+27313791 | Msa0246250:CDS |
| AAATGCTTACTGGAGTTAAG+TGG | 0.600833 | 2_2:+27312705 | Msa0246250:CDS |
| GTTGTTTCATCAATGGTCAG+TGG | 0.607958 | 2_2:+27308643 | Msa0246250:CDS |
| CAGTCGGTACTGCTGGTCAG+CGG | 0.609640 | 2_2:+27312796 | Msa0246250:CDS |
| GGGTCTGTAGTGGAGTCAGA+CGG | 0.609697 | 2_2:+27313283 | Msa0246250:CDS |
| AGGGCTAAATTGGATCCGCT+GGG | 0.615639 | 2_2:+27309528 | Msa0246250:CDS |
| AAAGAGGTGAATATTGCCCC+AGG | 0.617216 | 2_2:-27312177 | None:intergenic |
| AGCATACCTAGAACAGCACA+TGG | 0.620532 | 2_2:-27311034 | None:intergenic |
| AACTGTGATAGATTATGAAG+AGG | 0.621122 | 2_2:+27309299 | Msa0246250:CDS |
| GGACAGTGAGTTGTGTTGTG+TGG | 0.622608 | 2_2:-27308431 | None:intergenic |
| ACATTAATGCCATCAAGTCA+AGG | 0.623799 | 2_2:-27314168 | None:intergenic |
| GGGTGGGAAGATCCTAACAG+GGG | 0.625329 | 2_2:+27313261 | Msa0246250:intron |
| AATGGTCAGTGGAAAGCCAA+TGG | 0.632287 | 2_2:+27308654 | Msa0246250:CDS |
| CTAAGACTTACCATGTAGAA+CGG | 0.635773 | 2_2:-27313886 | None:intergenic |
| ATTGTGACCTGATTGGTGGA+AGG | 0.636693 | 2_2:-27308699 | None:intergenic |
| ATTGAACTACTCAGTCCTTG+AGG | 0.636889 | 2_2:-27313523 | None:intergenic |
| TAATATCTGAAGTTCTTGAG+AGG | 0.637296 | 2_2:+27312145 | Msa0246250:CDS |
| AATTCTCGCAGAAGGAATTG+GGG | 0.641126 | 2_2:+27309578 | Msa0246250:CDS |
| TTACGCCAACTATTCCTAGT+GGG | 0.645217 | 2_2:-27310994 | None:intergenic |
| ATTACGCCAACTATTCCTAG+TGG | 0.647280 | 2_2:-27310995 | None:intergenic |
| GTGGGAAGATCCTAACAGGG+GGG | 0.652460 | 2_2:+27313263 | Msa0246250:CDS |
| CCTGTTGTAGGTGGGCGCGG+AGG | 0.672296 | 2_2:+27312653 | Msa0246250:intron |
| ACGGAAGAACGAGTATGAAG+GGG | 0.674585 | 2_2:-27313039 | None:intergenic |
| TGATTGCCGTGCAGGCCAAG+AGG | 0.678799 | 2_2:+27313734 | Msa0246250:intron |
| AGTGAACTACCATTAGCTCA+GGG | 0.679489 | 2_2:+27314036 | Msa0246250:CDS |
| CTTCCGGTAAATGAAACCAG+TGG | 0.679574 | 2_2:-27312249 | None:intergenic |
| GCTTGCATTGCATTAGTCTG+TGG | 0.680154 | 2_2:+27311225 | Msa0246250:CDS |
| CCTCGTCCGTCTCAAAAGTG+GGG | 0.681490 | 2_2:+27308407 | Msa0246250:CDS |
| TGAGAGGAACAAATTACCTG+GGG | 0.694318 | 2_2:+27312161 | Msa0246250:CDS |
| AGGGTGGGAAGATCCTAACA+GGG | 0.698475 | 2_2:+27313260 | Msa0246250:intron |
| GGTGGAGAAAAGGCAACTGG+TGG | 0.706059 | 2_2:+27313821 | Msa0246250:CDS |
| AGAGCCACCAACCTACCCAG+CGG | 0.779077 | 2_2:-27309543 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATTTTTTGTAAAATTT+TGG | + | chr2_2:27314300-27314319 | Msa0246250:three_prime_UTR | 10.0% |
| !!! | CCTAATTTTGTTTTTAAAAA+GGG | + | chr2_2:27308943-27308962 | Msa0246250:intron | 15.0% |
| !!! | TTAACTTGTTAAAAAATAAC+TGG | + | chr2_2:27309985-27310004 | Msa0246250:intron | 15.0% |
| !! | TAAAACTAGTATTTAAAAGA+TGG | - | chr2_2:27310262-27310281 | None:intergenic | 15.0% |
| !! | TTTATCCTTAAAAAGATATA+GGG | - | chr2_2:27310295-27310314 | None:intergenic | 15.0% |
| !! | ATTTATCCTTAAAAAGATAT+AGG | - | chr2_2:27310296-27310315 | None:intergenic | 15.0% |
| !! | ATTAATTAACCAAATTGAAT+TGG | + | chr2_2:27312333-27312352 | Msa0246250:intron | 15.0% |
| !!! | ACTACATTTTTAATAAAAAG+TGG | - | chr2_2:27312371-27312390 | None:intergenic | 15.0% |
| !! | ATTGAATATTAAATACCTTA+CGG | - | chr2_2:27312900-27312919 | None:intergenic | 15.0% |
| !!! | AGGTATTTAATATTCAATTT+TGG | + | chr2_2:27312902-27312921 | Msa0246250:intron | 15.0% |
| !!! | TTTTCTAGTTAAGTTAAATA+TGG | + | chr2_2:27313117-27313136 | Msa0246250:intron | 15.0% |
| !!! | TTATTAGGAAATAAGAATTT+TGG | - | chr2_2:27314234-27314253 | None:intergenic | 15.0% |
| !!! | ACATACAAAACATTTTTATT+AGG | - | chr2_2:27314249-27314268 | None:intergenic | 15.0% |
| !! | ATCATTATCATCATCAATTT+GGG | + | chr2_2:27308543-27308562 | Msa0246250:CDS | 20.0% |
| !! | TAAAAACAAAATTAGGCAAT+AGG | - | chr2_2:27308939-27308958 | None:intergenic | 20.0% |
| !!! | GCCTAATTTTGTTTTTAAAA+AGG | + | chr2_2:27308942-27308961 | Msa0246250:intron | 20.0% |
| !!! | CCCTTTTTAAAAACAAAATT+AGG | - | chr2_2:27308946-27308965 | None:intergenic | 20.0% |
| !!! | TTGAATTTTAAGTGCATATT+TGG | + | chr2_2:27309071-27309090 | Msa0246250:intron | 20.0% |
| !!! | ATTTGAAATCCAACTAATTT+TGG | - | chr2_2:27309166-27309185 | None:intergenic | 20.0% |
| !!! | GTTAACAATTTTCAAAAGTA+CGG | - | chr2_2:27309970-27309989 | None:intergenic | 20.0% |
| !! | TTCTTAAACATTCTGAATAA+CGG | - | chr2_2:27310036-27310055 | None:intergenic | 20.0% |
| !! | TGTAATATGAAAAGTAATGT+TGG | + | chr2_2:27310184-27310203 | Msa0246250:intron | 20.0% |
| !! | GTAATATGAAAAGTAATGTT+GGG | + | chr2_2:27310185-27310204 | Msa0246250:intron | 20.0% |
| !! | TTTCTGTATAATAATACTCA+GGG | + | chr2_2:27310731-27310750 | Msa0246250:intron | 20.0% |
| !! | AAGAAGTTACAAAATAATCA+CGG | - | chr2_2:27310908-27310927 | None:intergenic | 20.0% |
| !! | AAAAAGAAGATCAAGAAAAT+TGG | - | chr2_2:27311311-27311330 | None:intergenic | 20.0% |
| !! | TTCTGTATAATATGCATAAA+TGG | + | chr2_2:27311866-27311885 | Msa0246250:intron | 20.0% |
| !!! | CTAAACATAATGTTTTTAAC+AGG | + | chr2_2:27312303-27312322 | Msa0246250:intron | 20.0% |
| !! | TTTACAAACAAGTCAAAATT+GGG | + | chr2_2:27312986-27313005 | Msa0246250:CDS | 20.0% |
| !!! | AAATTTTGGTCAAATATGAT+GGG | + | chr2_2:27313192-27313211 | Msa0246250:intron | 20.0% |
| !! | AATCAGAAACTAAATTTGTA+AGG | - | chr2_2:27313443-27313462 | None:intergenic | 20.0% |
| !! | TTAACAGAACTTATAAGTAA+GGG | - | chr2_2:27313934-27313953 | None:intergenic | 20.0% |
| !! | ATTAACAGAACTTATAAGTA+AGG | - | chr2_2:27313935-27313954 | None:intergenic | 20.0% |
| !! | AACAAATATCCAATAAATTG+AGG | + | chr2_2:27314207-27314226 | Msa0246250:three_prime_UTR | 20.0% |
| !! | ACAAATATCCAATAAATTGA+GGG | + | chr2_2:27314208-27314227 | Msa0246250:three_prime_UTR | 20.0% |
| !!! | TATATACGTTGCTTTTTGAT+TGG | - | chr2_2:27308348-27308367 | None:intergenic | 25.0% |
| ! | AAAAGCAACGTATATAGATA+TGG | + | chr2_2:27308352-27308371 | Msa0246250:five_prime_UTR | 25.0% |
| !! | TGTTGTTGTTATTATAGTCA+CGG | - | chr2_2:27308472-27308491 | None:intergenic | 25.0% |
| ! | CATCATTATCATCATCAATT+TGG | + | chr2_2:27308542-27308561 | Msa0246250:CDS | 25.0% |
| !! | AATTTGGGTTTCAAGAAAAT+GGG | + | chr2_2:27308558-27308577 | Msa0246250:CDS | 25.0% |
| !!! | TTGGAATTTTTGAAAGAGAT+CGG | + | chr2_2:27308600-27308619 | Msa0246250:CDS | 25.0% |
| ! | TTTATAAAAACACCGTGATT+CGG | - | chr2_2:27309114-27309133 | None:intergenic | 25.0% |
| !!! | TTAGTTGTTTTCATGGTTTT+TGG | + | chr2_2:27309202-27309221 | Msa0246250:intron | 25.0% |
| !! | ATATCTGATAATGCATTACT+TGG | - | chr2_2:27309688-27309707 | None:intergenic | 25.0% |
| ! | TTGTAGTGAATTAAAACTGA+TGG | - | chr2_2:27309857-27309876 | None:intergenic | 25.0% |
| ! | AGAAAAAAAGCTTTCCAATA+TGG | + | chr2_2:27309877-27309896 | Msa0246250:intron | 25.0% |
| ! | GAAAAAAAGCTTTCCAATAT+GGG | + | chr2_2:27309878-27309897 | Msa0246250:intron | 25.0% |
| ! | TAAAAAATAACTGGACATAC+TGG | + | chr2_2:27309994-27310013 | Msa0246250:intron | 25.0% |
| ! | TCTTAAACATTCTGAATAAC+GGG | - | chr2_2:27310035-27310054 | None:intergenic | 25.0% |
| !! | ATTTGAAACTGATATGTGTT+TGG | + | chr2_2:27310132-27310151 | Msa0246250:intron | 25.0% |
| !! | TTTGAAACTGATATGTGTTT+GGG | + | chr2_2:27310133-27310152 | Msa0246250:intron | 25.0% |
| !!! | CTTTTAAAAGTGACTATTCT+CGG | - | chr2_2:27310392-27310411 | None:intergenic | 25.0% |
| ! | ATATCACATACAAATGTTCA+GGG | - | chr2_2:27310574-27310593 | None:intergenic | 25.0% |
| ! | TATATCACATACAAATGTTC+AGG | - | chr2_2:27310575-27310594 | None:intergenic | 25.0% |
| ! | TAATTGATCCATTCAATTGT+CGG | - | chr2_2:27310666-27310685 | None:intergenic | 25.0% |
| ! | AAAAAATCTTACGTTCTGAT+GGG | - | chr2_2:27310690-27310709 | None:intergenic | 25.0% |
| ! | TAAAAAATCTTACGTTCTGA+TGG | - | chr2_2:27310691-27310710 | None:intergenic | 25.0% |
| ! | GTTTCTGTATAATAATACTC+AGG | + | chr2_2:27310730-27310749 | Msa0246250:intron | 25.0% |
| !! | GATTTCTTTTCATGATATTC+TGG | + | chr2_2:27310806-27310825 | Msa0246250:intron | 25.0% |
| ! | GTTAAACTTTCTTTCTTTAC+AGG | + | chr2_2:27310847-27310866 | Msa0246250:intron | 25.0% |
| ! | TTCTTCACCATTATATCATA+GGG | + | chr2_2:27310923-27310942 | Msa0246250:intron | 25.0% |
| !! | ATTGATAGCATAAAGTTTAC+AGG | - | chr2_2:27311368-27311387 | None:intergenic | 25.0% |
| !! | TTTTATCAGCATCTTTCATT+TGG | + | chr2_2:27311424-27311443 | Msa0246250:intron | 25.0% |
| ! | TATATCTTAAATGACACAGT+TGG | + | chr2_2:27311515-27311534 | Msa0246250:intron | 25.0% |
| ! | ACTAAGTGAAACAAATTCAA+AGG | - | chr2_2:27311600-27311619 | None:intergenic | 25.0% |
| !! | ATATTACGGATTGATGTTAA+TGG | - | chr2_2:27311639-27311658 | None:intergenic | 25.0% |
| !!! | TGTATTTTTGTTCTCTTATG+TGG | + | chr2_2:27311743-27311762 | Msa0246250:intron | 25.0% |
| ! | ACAGATACACATATTGTATT+GGG | - | chr2_2:27311845-27311864 | None:intergenic | 25.0% |
| ! | TACAGATACACATATTGTAT+TGG | - | chr2_2:27311846-27311865 | None:intergenic | 25.0% |
| ! | GTAATAGCAATAGTTATCAA+TGG | - | chr2_2:27312120-27312139 | None:intergenic | 25.0% |
| ! | AATCATGATTCATGTATATC+TGG | + | chr2_2:27312528-27312547 | Msa0246250:intron | 25.0% |
| ! | AAAACAGTGAATGAAAGATT+TGG | + | chr2_2:27312681-27312700 | Msa0246250:CDS | 25.0% |
| ! | TAACAATGCAATTATAGTCA+TGG | + | chr2_2:27312728-27312747 | Msa0246250:CDS | 25.0% |
| !! | TGAACTCAAGTTTTCAAAAT+TGG | - | chr2_2:27312852-27312871 | None:intergenic | 25.0% |
| ! | CTTTACAAACAAGTCAAAAT+TGG | + | chr2_2:27312985-27313004 | Msa0246250:CDS | 25.0% |
| ! | CTAGTTAAGTTAAATATGGT+CGG | + | chr2_2:27313121-27313140 | Msa0246250:intron | 25.0% |
| !!! | CAAATTTTGGTCAAATATGA+TGG | + | chr2_2:27313191-27313210 | Msa0246250:intron | 25.0% |
| ! | AATTTCATAACATAGAGAAC+TGG | - | chr2_2:27313379-27313398 | None:intergenic | 25.0% |
| ! | TCTCTATGTTATGAAATTTC+AGG | + | chr2_2:27313381-27313400 | Msa0246250:CDS | 25.0% |
| ! | ATCCATTTGAATATAGTATC+AGG | - | chr2_2:27313562-27313581 | None:intergenic | 25.0% |
| ! | GATACTATATTCAAATGGAT+CGG | + | chr2_2:27313562-27313581 | Msa0246250:CDS | 25.0% |
| ! | ATACTATATTCAAATGGATC+GGG | + | chr2_2:27313563-27313582 | Msa0246250:CDS | 25.0% |
| !!! | AAACATCTTTTAAAGGGTTT+TGG | - | chr2_2:27313666-27313685 | None:intergenic | 25.0% |
| !! | CATCACAAACATCTTTTAAA+GGG | - | chr2_2:27313672-27313691 | None:intergenic | 25.0% |
| !! | ACATCACAAACATCTTTTAA+AGG | - | chr2_2:27313673-27313692 | None:intergenic | 25.0% |
| ! | ATTAAGAACATGCAAAGTAA+AGG | - | chr2_2:27313974-27313993 | None:intergenic | 25.0% |
| ! | AACAAGATATGTTGTAAAAG+TGG | + | chr2_2:27314143-27314162 | Msa0246250:three_prime_UTR | 25.0% |
| ! | CAATTTGGGTTTCAAGAAAA+TGG | + | chr2_2:27308557-27308576 | Msa0246250:CDS | 30.0% |
| !! | TTTTTGAAAGAGATCGGTTT+AGG | + | chr2_2:27308606-27308625 | Msa0246250:CDS | 30.0% |
| !!! | ACTTTTTTCATTCATCACTC+AGG | - | chr2_2:27309019-27309038 | None:intergenic | 30.0% |
| ! | TAGCTTTTGCCAAAATTAGT+TGG | + | chr2_2:27309154-27309173 | Msa0246250:intron | 30.0% |
| ATAATCTATCACAGTTGCTT+CGG | - | chr2_2:27309295-27309314 | None:intergenic | 30.0% | |
| AACTGTGATAGATTATGAAG+AGG | + | chr2_2:27309299-27309318 | Msa0246250:CDS | 30.0% | |
| ACTGTGATAGATTATGAAGA+GGG | + | chr2_2:27309300-27309319 | Msa0246250:CDS | 30.0% | |
| CTAAATTCAGTATAAGCCAT+CGG | - | chr2_2:27309411-27309430 | None:intergenic | 30.0% | |
| ATACTGAATTTAGGTACAGT+TGG | + | chr2_2:27309418-27309437 | Msa0246250:intron | 30.0% | |
| ! | CTTACAATTTCACCTCTTTT+GGG | - | chr2_2:27309489-27309508 | None:intergenic | 30.0% |
| ! | CTAAGTACCTTGTACTATTT+TGG | + | chr2_2:27309714-27309733 | Msa0246250:intron | 30.0% |
| CATTACACCAAAATAGTACA+AGG | - | chr2_2:27309724-27309743 | None:intergenic | 30.0% | |
| ! | AAACACTAAACCCACATTTT+CGG | - | chr2_2:27309762-27309781 | None:intergenic | 30.0% |
| ! | TACATTTTAGATGCCCATAT+TGG | - | chr2_2:27309894-27309913 | None:intergenic | 30.0% |
| ACATAATCAACCATTCATGA+CGG | - | chr2_2:27310167-27310186 | None:intergenic | 30.0% | |
| TAGTATTTAAAAGATGGCAC+TGG | - | chr2_2:27310256-27310275 | None:intergenic | 30.0% | |
| ! | ACCAACCCTATATCTTTTTA+AGG | + | chr2_2:27310287-27310306 | Msa0246250:intron | 30.0% |
| TCCTTAAAAAGATATAGGGT+TGG | - | chr2_2:27310291-27310310 | None:intergenic | 30.0% | |
| ! | TTCCTTCATTTTCATTCTCA+GGG | + | chr2_2:27310412-27310431 | Msa0246250:intron | 30.0% |
| CTTCTTCACCATTATATCAT+AGG | + | chr2_2:27310922-27310941 | Msa0246250:intron | 30.0% | |
| TCTTCACCATTATATCATAG+GGG | + | chr2_2:27310924-27310943 | Msa0246250:intron | 30.0% | |
| AAGCTCAAAGTATAGAAAGT+AGG | - | chr2_2:27311151-27311170 | None:intergenic | 30.0% | |
| TCTATACTTTGAGCTTATTC+TGG | + | chr2_2:27311155-27311174 | Msa0246250:intron | 30.0% | |
| TGGTAAGTTCACATAATTAC+TGG | + | chr2_2:27311261-27311280 | Msa0246250:intron | 30.0% | |
| GGTAAGTTCACATAATTACT+GGG | + | chr2_2:27311262-27311281 | Msa0246250:intron | 30.0% | |
| TTAACAGTGTTTGCAATTGT+AGG | - | chr2_2:27311471-27311490 | None:intergenic | 30.0% | |
| TACAATTGCAAACACTGTTA+AGG | + | chr2_2:27311470-27311489 | Msa0246250:intron | 30.0% | |
| TTAAGGCAACTTATTTGTGT+TGG | + | chr2_2:27311487-27311506 | Msa0246250:intron | 30.0% | |
| TAAGGCAACTTATTTGTGTT+GGG | + | chr2_2:27311488-27311507 | Msa0246250:intron | 30.0% | |
| ! | AAATTCAAAGGAAGTGCAAT+TGG | - | chr2_2:27311588-27311607 | None:intergenic | 30.0% |
| GTTCATGAAATGTACTTTAG+TGG | + | chr2_2:27311709-27311728 | Msa0246250:intron | 30.0% | |
| TATGCATAAATGGCTTAGAA+AGG | + | chr2_2:27311876-27311895 | Msa0246250:intron | 30.0% | |
| ! | AAAAGTCGTTTAGTTCATCA+TGG | - | chr2_2:27311953-27311972 | None:intergenic | 30.0% |
| ATAGTTATCAATGGTGTAGT+TGG | - | chr2_2:27312111-27312130 | None:intergenic | 30.0% | |
| ! | TAATATCTGAAGTTCTTGAG+AGG | + | chr2_2:27312145-27312164 | Msa0246250:CDS | 30.0% |
| ACTGTACATCCAATTCAATT+TGG | - | chr2_2:27312345-27312364 | None:intergenic | 30.0% | |
| ACACAATCTCTAACAAATAG+AGG | - | chr2_2:27312508-27312527 | None:intergenic | 30.0% | |
| TCAAAGTAGCATGTTTGAAT+AGG | - | chr2_2:27312557-27312576 | None:intergenic | 30.0% | |
| ATCATACTGAAGTGAACATT+CGG | - | chr2_2:27312589-27312608 | None:intergenic | 30.0% | |
| TAATGAAATGTTCCTGTTGT+AGG | + | chr2_2:27312641-27312660 | Msa0246250:intron | 30.0% | |
| !!! | TTGGTTTTAATACCAGTCTA+CGG | - | chr2_2:27312833-27312852 | None:intergenic | 30.0% |
| !! | TTTGACTTGTTTGTAAAGTC+CGG | - | chr2_2:27312983-27313002 | None:intergenic | 30.0% |
| CAAAATTGGACATAACACAA+GGG | - | chr2_2:27313157-27313176 | None:intergenic | 30.0% | |
| ! | ACGGTATTGTAAGCAAATTT+TGG | + | chr2_2:27313178-27313197 | Msa0246250:intron | 30.0% |
| GACCTGATACTATATTCAAA+TGG | + | chr2_2:27313557-27313576 | Msa0246250:CDS | 30.0% | |
| AATGTGAACATACCAACAAA+CGG | + | chr2_2:27313776-27313795 | Msa0246250:CDS | 30.0% | |
| TAGTTCACTTCCATAATTGA+TGG | - | chr2_2:27314025-27314044 | None:intergenic | 30.0% | |
| TCTCATCATCTTTATGTGTA+AGG | - | chr2_2:27314079-27314098 | None:intergenic | 30.0% | |
| !! | AATTTTGGCCCTCAATTTAT+TGG | - | chr2_2:27314219-27314238 | None:intergenic | 30.0% |
| !!! | TACGTTGCTTTTTGATTGGT+GGG | - | chr2_2:27308344-27308363 | None:intergenic | 35.0% |
| !!! | ATACGTTGCTTTTTGATTGG+TGG | - | chr2_2:27308345-27308364 | None:intergenic | 35.0% |
| TTCTGATCAGAGTAACAACT+TGG | + | chr2_2:27308581-27308600 | Msa0246250:CDS | 35.0% | |
| ! | GGTTTAGGTTCAACTAACAT+CGG | + | chr2_2:27308621-27308640 | Msa0246250:CDS | 35.0% |
| ! | AACATCGGTTGTTTCATCAA+TGG | + | chr2_2:27308636-27308655 | Msa0246250:CDS | 35.0% |
| AGAAGTAACAGAAGAACCAT+TGG | - | chr2_2:27308673-27308692 | None:intergenic | 35.0% | |
| AAAAATTGTGACCTGATTGG+TGG | - | chr2_2:27308706-27308725 | None:intergenic | 35.0% | |
| GAGAAAAATTGTGACCTGAT+TGG | - | chr2_2:27308709-27308728 | None:intergenic | 35.0% | |
| !! | CAAGCAGTTAGTTGTTTTCA+TGG | + | chr2_2:27309195-27309214 | Msa0246250:intron | 35.0% |
| !!! | TTCATGGTTTTTGGCGATTT+TGG | + | chr2_2:27309211-27309230 | Msa0246250:intron | 35.0% |
| CGATGGCTTATACTGAATTT+AGG | + | chr2_2:27309409-27309428 | Msa0246250:intron | 35.0% | |
| GTACAGTTGGAAACTAAATG+AGG | + | chr2_2:27309431-27309450 | Msa0246250:intron | 35.0% | |
| ! | CCTTACAATTTCACCTCTTT+TGG | - | chr2_2:27309490-27309509 | None:intergenic | 35.0% |
| CCAAAAGAGGTGAAATTGTA+AGG | + | chr2_2:27309487-27309506 | Msa0246250:CDS | 35.0% | |
| GTGAAATTGTAAGGCAGATT+GGG | + | chr2_2:27309496-27309515 | Msa0246250:CDS | 35.0% | |
| TGAAATTGTAAGGCAGATTG+GGG | + | chr2_2:27309497-27309516 | Msa0246250:CDS | 35.0% | |
| AAAATTCTCGCAGAAGGAAT+TGG | + | chr2_2:27309576-27309595 | Msa0246250:CDS | 35.0% | |
| AAATTCTCGCAGAAGGAATT+GGG | + | chr2_2:27309577-27309596 | Msa0246250:CDS | 35.0% | |
| ! | TGGGTTTAGTGTTTTCTGTT+AGG | + | chr2_2:27309768-27309787 | Msa0246250:intron | 35.0% |
| ! | GGGTTTAGTGTTTTCTGTTA+GGG | + | chr2_2:27309769-27309788 | Msa0246250:intron | 35.0% |
| TATGCAGAAAATGCTTCCAT+TGG | - | chr2_2:27309822-27309841 | None:intergenic | 35.0% | |
| ! | ATGGGCATCTAAAATGTAAC+TGG | + | chr2_2:27309896-27309915 | Msa0246250:intron | 35.0% |
| ! | GTTCCTTCATTTTCATTCTC+AGG | + | chr2_2:27310411-27310430 | Msa0246250:intron | 35.0% |
| ! | ATAAACTTTGGTGTGTGTAC+AGG | + | chr2_2:27310441-27310460 | Msa0246250:intron | 35.0% |
| CCTGTAACAAGTAGAATGAA+AGG | - | chr2_2:27310606-27310625 | None:intergenic | 35.0% | |
| ! | CCTTTCATTCTACTTGTTAC+AGG | + | chr2_2:27310603-27310622 | Msa0246250:intron | 35.0% |
| ATATGTGTGATTACGCTGTT+GGG | + | chr2_2:27310635-27310654 | Msa0246250:CDS | 35.0% | |
| TCCTGATCATATGATGTTTG+AGG | + | chr2_2:27310870-27310889 | Msa0246250:CDS | 35.0% | |
| ACCTCAAACATCATATGATC+AGG | - | chr2_2:27310874-27310893 | None:intergenic | 35.0% | |
| CTTCACCATTATATCATAGG+GGG | + | chr2_2:27310925-27310944 | Msa0246250:intron | 35.0% | |
| CTAAACCCCCTATGATATAA+TGG | - | chr2_2:27310933-27310952 | None:intergenic | 35.0% | |
| CAGATAGCTTTCTTGATGTT+TGG | - | chr2_2:27311126-27311145 | None:intergenic | 35.0% | |
| ATCTTAAATGACACAGTTGG+TGG | + | chr2_2:27311518-27311537 | Msa0246250:intron | 35.0% | |
| TCTTAAATGACACAGTTGGT+GGG | + | chr2_2:27311519-27311538 | Msa0246250:intron | 35.0% | |
| GTAGAGAGATCAGATTATGA+GGG | - | chr2_2:27311771-27311790 | None:intergenic | 35.0% | |
| TGTAGAGAGATCAGATTATG+AGG | - | chr2_2:27311772-27311791 | None:intergenic | 35.0% | |
| AATCTGATCTCTCTACACAA+TGG | + | chr2_2:27311775-27311794 | Msa0246250:intron | 35.0% | |
| CACATATTGTATTGGGAAGA+GGG | - | chr2_2:27311838-27311857 | None:intergenic | 35.0% | |
| ACACATATTGTATTGGGAAG+AGG | - | chr2_2:27311839-27311858 | None:intergenic | 35.0% | |
| CATAAATGGCTTAGAAAGGA+GGG | + | chr2_2:27311880-27311899 | Msa0246250:intron | 35.0% | |
| CTTACTACCACACAAATTAC+AGG | + | chr2_2:27312076-27312095 | Msa0246250:intron | 35.0% | |
| TACCACACAAATTACAGGAA+GGG | + | chr2_2:27312081-27312100 | Msa0246250:intron | 35.0% | |
| TTGAGAGGAACAAATTACCT+GGG | + | chr2_2:27312160-27312179 | Msa0246250:CDS | 35.0% | |
| !! | ATTCCACTGGTTTCATTTAC+CGG | + | chr2_2:27312246-27312265 | Msa0246250:CDS | 35.0% |
| AATACCCTATAGCATCATCT+TGG | + | chr2_2:27312471-27312490 | Msa0246250:intron | 35.0% | |
| ACTACCAAGATGATGCTATA+GGG | - | chr2_2:27312478-27312497 | None:intergenic | 35.0% | |
| AAGTAGCATGTTTGAATAGG+AGG | - | chr2_2:27312554-27312573 | None:intergenic | 35.0% | |
| AAGATTTGGCAAATGCTTAC+TGG | + | chr2_2:27312695-27312714 | Msa0246250:CDS | 35.0% | |
| AAATGCTTACTGGAGTTAAG+TGG | + | chr2_2:27312705-27312724 | Msa0246250:CDS | 35.0% | |
| GGATGATGCAGATATAAAAC+TGG | + | chr2_2:27312749-27312768 | Msa0246250:CDS | 35.0% | |
| ! | TCTATTTTCTTTGCAGCAGT+CGG | + | chr2_2:27312780-27312799 | Msa0246250:CDS | 35.0% |
| AATACCTTACGGAAACAACA+TGG | - | chr2_2:27312889-27312908 | None:intergenic | 35.0% | |
| AATGTACTAGATCAACTTGC+CGG | + | chr2_2:27312961-27312980 | Msa0246250:CDS | 35.0% | |
| GCAAAATTGGACATAACACA+AGG | - | chr2_2:27313158-27313177 | None:intergenic | 35.0% | |
| ! | GTGTTATGTCCAATTTTGCA+CGG | + | chr2_2:27313159-27313178 | Msa0246250:intron | 35.0% |
| CTTACAATACCGTGCAAAAT+TGG | - | chr2_2:27313171-27313190 | None:intergenic | 35.0% | |
| TACTCGATACTCTGATTATC+AGG | + | chr2_2:27313240-27313259 | Msa0246250:intron | 35.0% | |
| ACTCGATACTCTGATTATCA+GGG | + | chr2_2:27313241-27313260 | Msa0246250:intron | 35.0% | |
| GCAGAAATCTCAACAATTGT+TGG | - | chr2_2:27313322-27313341 | None:intergenic | 35.0% | |
| TTGAGGAACAGAATTGTTCA+AGG | - | chr2_2:27313509-27313528 | None:intergenic | 35.0% | |
| TTGAACAATTCTGTTCCTCA+AGG | + | chr2_2:27313508-27313527 | Msa0246250:CDS | 35.0% | |
| AGTCATTAGATGGTATCTAG+AGG | - | chr2_2:27313619-27313638 | None:intergenic | 35.0% | |
| CTAAGACTTACCATGTAGAA+CGG | - | chr2_2:27313889-27313908 | None:intergenic | 35.0% | |
| TTGTGCAGTACCATCAATTA+TGG | + | chr2_2:27314012-27314031 | Msa0246250:intron | 35.0% | |
| AAGTTTATTCCCTGAGCTAA+TGG | - | chr2_2:27314048-27314067 | None:intergenic | 35.0% | |
| TTAGCTCAGGGAATAAACTT+TGG | + | chr2_2:27314048-27314067 | Msa0246250:CDS | 35.0% | |
| ! | TGAGATGCAATTTTCAACTC+TGG | + | chr2_2:27314094-27314113 | Msa0246250:three_prime_UTR | 35.0% |
| ! | ATTTTCAACTCTGGTTGACA+TGG | + | chr2_2:27314103-27314122 | Msa0246250:three_prime_UTR | 35.0% |
| ! | TTTTCAACTCTGGTTGACAT+GGG | + | chr2_2:27314104-27314123 | Msa0246250:three_prime_UTR | 35.0% |
| ACATTAATGCCATCAAGTCA+AGG | - | chr2_2:27314171-27314190 | None:intergenic | 35.0% | |
| ! | GAATTTACTCTCTAGAAAGC+AGG | + | chr2_2:27314334-27314353 | Msa0246250:three_prime_UTR | 35.0% |
| !!! | ACGTTGCTTTTTGATTGGTG+GGG | - | chr2_2:27308343-27308362 | None:intergenic | 40.0% |
| ! | GTTGTTTCATCAATGGTCAG+TGG | + | chr2_2:27308643-27308662 | Msa0246250:CDS | 40.0% |
| TGTTAATCCTTCCACCAATC+AGG | + | chr2_2:27308692-27308711 | Msa0246250:CDS | 40.0% | |
| CGATGAATTTAGCCGAATCA+CGG | + | chr2_2:27309099-27309118 | Msa0246250:intron | 40.0% | |
| GGTGAAATTGTAAGGCAGAT+TGG | + | chr2_2:27309495-27309514 | Msa0246250:CDS | 40.0% | |
| ATGGGAAAAATTCTCGCAGA+AGG | + | chr2_2:27309570-27309589 | Msa0246250:CDS | 40.0% | |
| AATTCTCGCAGAAGGAATTG+GGG | + | chr2_2:27309578-27309597 | Msa0246250:CDS | 40.0% | |
| TGACAGTACGCAAGTCAAAT+CGG | + | chr2_2:27309656-27309675 | Msa0246250:intron | 40.0% | |
| CAATTCTCAGCCGAAAATGT+GGG | + | chr2_2:27309749-27309768 | Msa0246250:intron | 40.0% | |
| TTCCTCCTGAAATAGCTAAG+TGG | - | chr2_2:27310111-27310130 | None:intergenic | 40.0% | |
| GGTTACTAAATTAGCAGTGC+AGG | - | chr2_2:27310226-27310245 | None:intergenic | 40.0% | |
| !! | AAAGATGGCACTGGCAAAAT+TGG | - | chr2_2:27310247-27310266 | None:intergenic | 40.0% |
| CCATGAAAATGCAGTTAACG+CGG | - | chr2_2:27310347-27310366 | None:intergenic | 40.0% | |
| CATGGCTTATGTCCTGTATT+TGG | + | chr2_2:27310362-27310381 | Msa0246250:intron | 40.0% | |
| ATTCTCGGAGAACCAAATAC+AGG | - | chr2_2:27310377-27310396 | None:intergenic | 40.0% | |
| TGCCCTGAGAATGAAAATGA+AGG | - | chr2_2:27310417-27310436 | None:intergenic | 40.0% | |
| !! | TCAGGGCATTGCATAAACTT+TGG | + | chr2_2:27310429-27310448 | Msa0246250:intron | 40.0% |
| GATATGTGTGATTACGCTGT+TGG | + | chr2_2:27310634-27310653 | Msa0246250:CDS | 40.0% | |
| ATTGTGTGCTCTTACACTAC+AGG | + | chr2_2:27310964-27310983 | Msa0246250:intron | 40.0% | |
| TTACGCCAACTATTCCTAGT+GGG | - | chr2_2:27310997-27311016 | None:intergenic | 40.0% | |
| ATTACGCCAACTATTCCTAG+TGG | - | chr2_2:27310998-27311017 | None:intergenic | 40.0% | |
| ! | AACTTTCCATGTGCTGTTCT+AGG | + | chr2_2:27311028-27311047 | Msa0246250:CDS | 40.0% |
| TTCTTCTCCTATCTCAACAC+AGG | + | chr2_2:27311059-27311078 | Msa0246250:intron | 40.0% | |
| ATCATTGCCTGTGTTGAGAT+AGG | - | chr2_2:27311069-27311088 | None:intergenic | 40.0% | |
| CACAGGCAATGATACATTTC+AGG | + | chr2_2:27311076-27311095 | Msa0246250:intron | 40.0% | |
| GTTCATTTCTGTTGTGTCTC+AGG | + | chr2_2:27311195-27311214 | Msa0246250:intron | 40.0% | |
| ATTTCTGTTGTGTCTCAGGA+TGG | + | chr2_2:27311199-27311218 | Msa0246250:intron | 40.0% | |
| ! | GGGCACAAAGCTATAAGTTT+TGG | + | chr2_2:27311539-27311558 | Msa0246250:intron | 40.0% |
| ! | GGAAGTGCAATTGGAGAAAT+CGG | - | chr2_2:27311579-27311598 | None:intergenic | 40.0% |
| GCATAAATGGCTTAGAAAGG+AGG | + | chr2_2:27311879-27311898 | Msa0246250:intron | 40.0% | |
| TAGAAAGGAGGGTTATCAGA+AGG | + | chr2_2:27311891-27311910 | Msa0246250:intron | 40.0% | |
| AGAAAGGAGGGTTATCAGAA+GGG | + | chr2_2:27311892-27311911 | Msa0246250:intron | 40.0% | |
| CTACCACACAAATTACAGGA+AGG | + | chr2_2:27312080-27312099 | Msa0246250:intron | 40.0% | |
| CTTGAGAGGAACAAATTACC+TGG | + | chr2_2:27312159-27312178 | Msa0246250:CDS | 40.0% | |
| TGAGAGGAACAAATTACCTG+GGG | + | chr2_2:27312161-27312180 | Msa0246250:CDS | 40.0% | |
| GCAATATTCACCTCTTTCTG+TGG | + | chr2_2:27312183-27312202 | Msa0246250:CDS | 40.0% | |
| ATATTCACCTCTTTCTGTGG+AGG | + | chr2_2:27312186-27312205 | Msa0246250:CDS | 40.0% | |
| TTCATTTACCGGAAGCTCAA+AGG | + | chr2_2:27312257-27312276 | Msa0246250:CDS | 40.0% | |
| AGAAACTACCTTTGAGCTTC+CGG | - | chr2_2:27312268-27312287 | None:intergenic | 40.0% | |
| CACTACCAAGATGATGCTAT+AGG | - | chr2_2:27312479-27312498 | None:intergenic | 40.0% | |
| TGAAATGTTCCTGTTGTAGG+TGG | + | chr2_2:27312644-27312663 | Msa0246250:intron | 40.0% | |
| GAAATGTTCCTGTTGTAGGT+GGG | + | chr2_2:27312645-27312664 | Msa0246250:intron | 40.0% | |
| ! | TTTTAATACCAGTCTACGGC+AGG | - | chr2_2:27312829-27312848 | None:intergenic | 40.0% |
| TCCGTGGAAAACTTCAAGAA+AGG | + | chr2_2:27313057-27313076 | Msa0246250:CDS | 40.0% | |
| ! | GCCTTTCTTGAAGTTTTCCA+CGG | - | chr2_2:27313061-27313080 | None:intergenic | 40.0% |
| CATTGCAGCGATAAAATCTC+AGG | + | chr2_2:27313080-27313099 | Msa0246250:CDS | 40.0% | |
| !! | AGAGTATCGAGTAAGCATCT+TGG | - | chr2_2:27313233-27313252 | None:intergenic | 40.0% |
| GATACTCTGATTATCAGGGT+GGG | + | chr2_2:27313245-27313264 | Msa0246250:intron | 40.0% | |
| ATTGAACTACTCAGTCCTTG+AGG | - | chr2_2:27313526-27313545 | None:intergenic | 40.0% | |
| AAATGGATCGGGTAACTATC+TGG | + | chr2_2:27313574-27313593 | Msa0246250:intron | 40.0% | |
| CCTAAGCTGAAGTCATTAGA+TGG | - | chr2_2:27313629-27313648 | None:intergenic | 40.0% | |
| CCATCTAATGACTTCAGCTT+AGG | + | chr2_2:27313626-27313645 | Msa0246250:intron | 40.0% | |
| AAGTGAACTACCATTAGCTC+AGG | + | chr2_2:27314035-27314054 | Msa0246250:CDS | 40.0% | |
| AGTGAACTACCATTAGCTCA+GGG | + | chr2_2:27314036-27314055 | Msa0246250:CDS | 40.0% | |
| ! | AAAGTGGTACCTTGACTTGA+TGG | + | chr2_2:27314159-27314178 | Msa0246250:three_prime_UTR | 40.0% |
| !!! | CGTTGCTTTTTGATTGGTGG+GGG | - | chr2_2:27308342-27308361 | None:intergenic | 45.0% |
| ! | TCACGGTTTGAGATTGAGAC+AGG | - | chr2_2:27308455-27308474 | None:intergenic | 45.0% |
| AATGGTCAGTGGAAAGCCAA+TGG | + | chr2_2:27308654-27308673 | Msa0246250:CDS | 45.0% | |
| ATTGTGACCTGATTGGTGGA+AGG | - | chr2_2:27308702-27308721 | None:intergenic | 45.0% | |
| ACTCACAGTCATCCATGTCT+TGG | - | chr2_2:27309349-27309368 | None:intergenic | 45.0% | |
| TGTGAATTTGCGATAGCCGA+TGG | + | chr2_2:27309392-27309411 | Msa0246250:intron | 45.0% | |
| TGTGACGTTCTTGCAGATTC+CGG | + | chr2_2:27309461-27309480 | Msa0246250:intron | 45.0% | |
| !! | ATTTCACCTCTTTTGGGTGC+CGG | - | chr2_2:27309483-27309502 | None:intergenic | 45.0% |
| GGATGCATTGAGGGCTAAAT+TGG | + | chr2_2:27309518-27309537 | Msa0246250:CDS | 45.0% | |
| AGAAGGAATTGGGGAAGTTC+AGG | + | chr2_2:27309587-27309606 | Msa0246250:CDS | 45.0% | |
| GAATTGGGGAAGTTCAGGTA+TGG | + | chr2_2:27309592-27309611 | Msa0246250:intron | 45.0% | |
| ! | CCACATTTTCGGCTGAGAAT+TGG | - | chr2_2:27309751-27309770 | None:intergenic | 45.0% |
| CCAATTCTCAGCCGAAAATG+TGG | + | chr2_2:27309748-27309767 | Msa0246250:intron | 45.0% | |
| !! | AGCTTTGGAGACACACTTGT+CGG | - | chr2_2:27309795-27309814 | None:intergenic | 45.0% |
| ! | TGTCGACTGCAATGGATTTC+AGG | - | chr2_2:27309934-27309953 | None:intergenic | 45.0% |
| GAAATCCATTGCAGTCGACA+AGG | + | chr2_2:27309934-27309953 | Msa0246250:intron | 45.0% | |
| ! | GTTAACCTTGTCGACTGCAA+TGG | - | chr2_2:27309942-27309961 | None:intergenic | 45.0% |
| GGACATACTGGAGAGTGAAA+AGG | + | chr2_2:27310006-27310025 | Msa0246250:intron | 45.0% | |
| CTGAAATAGCTAAGTGGACG+TGG | - | chr2_2:27310105-27310124 | None:intergenic | 45.0% | |
| ! | CACGTCCACTTAGCTATTTC+AGG | + | chr2_2:27310103-27310122 | Msa0246250:intron | 45.0% |
| ! | GTCCACTTAGCTATTTCAGG+AGG | + | chr2_2:27310106-27310125 | Msa0246250:intron | 45.0% |
| ! | CCGCGTTAACTGCATTTTCA+TGG | + | chr2_2:27310344-27310363 | Msa0246250:intron | 45.0% |
| ! | AACTTTGGTGTGTGTACAGG+CGG | + | chr2_2:27310444-27310463 | Msa0246250:intron | 45.0% |
| GTGCTCTTACACTACAGGTA+TGG | + | chr2_2:27310969-27310988 | Msa0246250:intron | 45.0% | |
| TGGAACCCACTAGGAATAGT+TGG | + | chr2_2:27310989-27311008 | Msa0246250:CDS | 45.0% | |
| AGCATACCTAGAACAGCACA+TGG | - | chr2_2:27311037-27311056 | None:intergenic | 45.0% | |
| ! | GCTTGCATTGCATTAGTCTG+TGG | + | chr2_2:27311225-27311244 | Msa0246250:CDS | 45.0% |
| TCTGTGGTAACTGTGTAGTC+TGG | + | chr2_2:27311241-27311260 | Msa0246250:CDS | 45.0% | |
| AGTGCAATTGGAGAAATCGG+TGG | - | chr2_2:27311576-27311595 | None:intergenic | 45.0% | |
| TGGTGGGGTAGGCTATATTA+CGG | - | chr2_2:27311653-27311672 | None:intergenic | 45.0% | |
| ! | CAACCTTATCTCACTTGGTG+GGG | - | chr2_2:27311668-27311687 | None:intergenic | 45.0% |
| CCAACCTTATCTCACTTGGT+GGG | - | chr2_2:27311669-27311688 | None:intergenic | 45.0% | |
| ACCAACCTTATCTCACTTGG+TGG | - | chr2_2:27311670-27311689 | None:intergenic | 45.0% | |
| ACCAAGTGAGATAAGGTTGG+TGG | + | chr2_2:27311669-27311688 | Msa0246250:intron | 45.0% | |
| ACCACCAACCTTATCTCACT+TGG | - | chr2_2:27311673-27311692 | None:intergenic | 45.0% | |
| !! | AGTGAGATAAGGTTGGTGGT+TGG | + | chr2_2:27311673-27311692 | Msa0246250:intron | 45.0% |
| ATAATCTATCCTTGCCTCCG+AGG | + | chr2_2:27311802-27311821 | Msa0246250:intron | 45.0% | |
| AAGAGGGAGAAAGAAGTCCT+CGG | - | chr2_2:27311822-27311841 | None:intergenic | 45.0% | |
| ! | CTCCCTTCCTGTAATTTGTG+TGG | - | chr2_2:27312086-27312105 | None:intergenic | 45.0% |
| AAAGAGGTGAATATTGCCCC+AGG | - | chr2_2:27312180-27312199 | None:intergenic | 45.0% | |
| !! | TTCTGTGGAGGTGCTGATAT+TGG | + | chr2_2:27312198-27312217 | Msa0246250:CDS | 45.0% |
| !! | TCTGTGGAGGTGCTGATATT+GGG | + | chr2_2:27312199-27312218 | Msa0246250:CDS | 45.0% |
| CTTCCGGTAAATGAAACCAG+TGG | - | chr2_2:27312252-27312271 | None:intergenic | 45.0% | |
| CTGCATGCACAGAGAAACTT+GGG | - | chr2_2:27312399-27312418 | None:intergenic | 45.0% | |
| TTTCTCTGTGCATGCAGCAA+TGG | + | chr2_2:27312402-27312421 | Msa0246250:intron | 45.0% | |
| !! | GCATCCATGTTGTTTCCGTA+AGG | + | chr2_2:27312882-27312901 | Msa0246250:intron | 45.0% |
| AGTCAAAATTGGGAATCCCC+TGG | + | chr2_2:27312996-27313015 | Msa0246250:CDS | 45.0% | |
| ACGGAAGAACGAGTATGAAG+GGG | - | chr2_2:27313042-27313061 | None:intergenic | 45.0% | |
| CACGGAAGAACGAGTATGAA+GGG | - | chr2_2:27313043-27313062 | None:intergenic | 45.0% | |
| CGATACTCTGATTATCAGGG+TGG | + | chr2_2:27313244-27313263 | Msa0246250:intron | 45.0% | |
| ATACCACAATCACTCCCTCT+TGG | - | chr2_2:27313752-27313771 | None:intergenic | 45.0% | |
| ! | AGTTGCCTTTTCTCCACCAA+AGG | - | chr2_2:27313819-27313838 | None:intergenic | 45.0% |
| TTTGGTGGAGAAAAGGCAAC+TGG | + | chr2_2:27313818-27313837 | Msa0246250:CDS | 45.0% | |
| AATACATGCGCCGTTCTACA+TGG | + | chr2_2:27313876-27313895 | Msa0246250:CDS | 45.0% | |
| !! | GCTTTTTGATTGGTGGGGGT+GGG | - | chr2_2:27308338-27308357 | None:intergenic | 50.0% |
| !! | TGCTTTTTGATTGGTGGGGG+TGG | - | chr2_2:27308339-27308358 | None:intergenic | 50.0% |
| ACCTCGTCCGTCTCAAAAGT+GGG | + | chr2_2:27308406-27308425 | Msa0246250:CDS | 50.0% | |
| !! | TGTGGACCCCACTTTTGAGA+CGG | - | chr2_2:27308416-27308435 | None:intergenic | 50.0% |
| GGACAGTGAGTTGTGTTGTG+TGG | - | chr2_2:27308434-27308453 | None:intergenic | 50.0% | |
| GTAGTGAAGCAGCCAAGACA+TGG | + | chr2_2:27309334-27309353 | Msa0246250:CDS | 50.0% | |
| GCAGATTGGGGATGCATTGA+GGG | + | chr2_2:27309509-27309528 | Msa0246250:CDS | 50.0% | |
| AGGGCTAAATTGGATCCGCT+GGG | + | chr2_2:27309528-27309547 | Msa0246250:CDS | 50.0% | |
| CTAAATTGGATCCGCTGGGT+AGG | + | chr2_2:27309532-27309551 | Msa0246250:CDS | 50.0% | |
| !! | TAGGTTGGTGGCTCTTGAGA+TGG | + | chr2_2:27309551-27309570 | Msa0246250:CDS | 50.0% |
| !! | AGGTTGGTGGCTCTTGAGAT+GGG | + | chr2_2:27309552-27309571 | Msa0246250:CDS | 50.0% |
| CAGTACGCAAGTCAAATCGG+TGG | + | chr2_2:27309659-27309678 | Msa0246250:intron | 50.0% | |
| GTCTCCAAAGCTTCGTCCAA+TGG | + | chr2_2:27309803-27309822 | Msa0246250:intron | 50.0% | |
| GCTTCCATTGGACGAAGCTT+TGG | - | chr2_2:27309810-27309829 | None:intergenic | 50.0% | |
| GGTAGAGTGACCGTCATGAA+TGG | + | chr2_2:27310154-27310173 | Msa0246250:intron | 50.0% | |
| GGGCTAAGCCGACAATTGAA+TGG | + | chr2_2:27310655-27310674 | Msa0246250:CDS | 50.0% | |
| CTACAGGTATGGAACCCACT+AGG | + | chr2_2:27310980-27310999 | Msa0246250:intron | 50.0% | |
| ! | CTTATCTCACTTGGTGGGGT+AGG | - | chr2_2:27311664-27311683 | None:intergenic | 50.0% |
| CTACCCCACCAAGTGAGATA+AGG | + | chr2_2:27311662-27311681 | Msa0246250:intron | 50.0% | |
| CCCACCAAGTGAGATAAGGT+TGG | + | chr2_2:27311666-27311685 | Msa0246250:intron | 50.0% | |
| !! | GATAAGGTTGGTGGTTGGCT+TGG | + | chr2_2:27311678-27311697 | Msa0246250:intron | 50.0% |
| ATCAGCACCTCCACAGAAAG+AGG | - | chr2_2:27312196-27312215 | None:intergenic | 50.0% | |
| GAAAGACAGACGCATTCCAC+TGG | + | chr2_2:27312233-27312252 | Msa0246250:CDS | 50.0% | |
| GCTGCATGCACAGAGAAACT+TGG | - | chr2_2:27312400-27312419 | None:intergenic | 50.0% | |
| GTGCATGCAGCAATGGCATT+AGG | + | chr2_2:27312409-27312428 | Msa0246250:intron | 50.0% | |
| ATTGGGAATCCCCTGGAGAA+AGG | + | chr2_2:27313003-27313022 | Msa0246250:CDS | 50.0% | |
| TTGGGAATCCCCTGGAGAAA+GGG | + | chr2_2:27313004-27313023 | Msa0246250:CDS | 50.0% | |
| AACCAGAGTCCCTTTCTCCA+GGG | - | chr2_2:27313016-27313035 | None:intergenic | 50.0% | |
| TGGAGAAAGGGACTCTGGTT+GGG | + | chr2_2:27313016-27313035 | Msa0246250:CDS | 50.0% | |
| CCACGGAAGAACGAGTATGA+AGG | - | chr2_2:27313044-27313063 | None:intergenic | 50.0% | |
| CCTTCATACTCGTTCTTCCG+TGG | + | chr2_2:27313041-27313060 | Msa0246250:CDS | 50.0% | |
| AGGGTGGGAAGATCCTAACA+GGG | + | chr2_2:27313260-27313279 | Msa0246250:intron | 50.0% | |
| CCAATCTCAGCTCCGTTTGT+TGG | - | chr2_2:27313791-27313810 | None:intergenic | 50.0% | |
| CCAACAAACGGAGCTGAGAT+TGG | + | chr2_2:27313788-27313807 | Msa0246250:CDS | 50.0% | |
| ACAAACGGAGCTGAGATTGG+AGG | + | chr2_2:27313791-27313810 | Msa0246250:CDS | 50.0% | |
| AGGAGCCTTTGGTGGAGAAA+AGG | + | chr2_2:27313811-27313830 | Msa0246250:CDS | 50.0% | |
| CTGGTTGACATGGGCTCAAA+TGG | + | chr2_2:27314113-27314132 | Msa0246250:three_prime_UTR | 50.0% | |
| CACCTCGTCCGTCTCAAAAG+TGG | + | chr2_2:27308405-27308424 | Msa0246250:CDS | 55.0% | |
| CCTCGTCCGTCTCAAAAGTG+GGG | + | chr2_2:27308407-27308426 | Msa0246250:CDS | 55.0% | |
| CAGATTCCGGCACCCAAAAG+AGG | + | chr2_2:27309474-27309493 | Msa0246250:intron | 55.0% | |
| GGCAGATTGGGGATGCATTG+AGG | + | chr2_2:27309508-27309527 | Msa0246250:CDS | 55.0% | |
| GAGGGCTAAATTGGATCCGC+TGG | + | chr2_2:27309527-27309546 | Msa0246250:CDS | 55.0% | |
| ATTGGATCCGCTGGGTAGGT+TGG | + | chr2_2:27309536-27309555 | Msa0246250:CDS | 55.0% | |
| GAAAGAAGTCCTCGGAGGCA+AGG | - | chr2_2:27311814-27311833 | None:intergenic | 55.0% | |
| AGGGAGAAAGAAGTCCTCGG+AGG | - | chr2_2:27311819-27311838 | None:intergenic | 55.0% | |
| !! | TGGAGGTGCTGATATTGGGC+AGG | + | chr2_2:27312203-27312222 | Msa0246250:CDS | 55.0% |
| TTTGCAGCAGTCGGTACTGC+TGG | + | chr2_2:27312789-27312808 | Msa0246250:CDS | 55.0% | |
| ACCAGAGTCCCTTTCTCCAG+GGG | - | chr2_2:27313015-27313034 | None:intergenic | 55.0% | |
| CAACCAGAGTCCCTTTCTCC+AGG | - | chr2_2:27313017-27313036 | None:intergenic | 55.0% | |
| CTGGAGAAAGGGACTCTGGT+TGG | + | chr2_2:27313015-27313034 | Msa0246250:CDS | 55.0% | |
| CAGGGTGGGAAGATCCTAAC+AGG | + | chr2_2:27313259-27313278 | Msa0246250:intron | 55.0% | |
| GGGTGGGAAGATCCTAACAG+GGG | + | chr2_2:27313261-27313280 | Msa0246250:intron | 55.0% | |
| GGTGGGAAGATCCTAACAGG+GGG | + | chr2_2:27313262-27313281 | Msa0246250:CDS | 55.0% | |
| GTGGGAAGATCCTAACAGGG+GGG | + | chr2_2:27313263-27313282 | Msa0246250:CDS | 55.0% | |
| CATGTGTGTGATTGCCGTGC+AGG | + | chr2_2:27313726-27313745 | Msa0246250:intron | 55.0% | |
| AGGCCAAGAGGGAGTGATTG+TGG | + | chr2_2:27313746-27313765 | Msa0246250:intron | 55.0% | |
| GCTGAGATTGGAGGAGCCTT+TGG | + | chr2_2:27313800-27313819 | Msa0246250:CDS | 55.0% | |
| GAGATTGGAGGAGCCTTTGG+TGG | + | chr2_2:27313803-27313822 | Msa0246250:CDS | 55.0% | |
| GGTGGAGAAAAGGCAACTGG+TGG | + | chr2_2:27313821-27313840 | Msa0246250:CDS | 55.0% | |
| GGAGAAAAGGCAACTGGTGG+TGG | + | chr2_2:27313824-27313843 | Msa0246250:CDS | 55.0% | |
| !!! | CCCCACTTTTGAGACGGACG+AGG | - | chr2_2:27308410-27308429 | None:intergenic | 60.0% |
| AGAGCCACCAACCTACCCAG+CGG | - | chr2_2:27309546-27309565 | None:intergenic | 60.0% | |
| GTTCCTGTTGTAGGTGGGCG+CGG | + | chr2_2:27312650-27312669 | Msa0246250:intron | 60.0% | |
| CAGTCGGTACTGCTGGTCAG+CGG | + | chr2_2:27312796-27312815 | Msa0246250:CDS | 60.0% | |
| GTGCACAACCTGCCGTAGAC+TGG | + | chr2_2:27312818-27312837 | Msa0246250:CDS | 60.0% | |
| TCCCCTGGAGAAAGGGACTC+TGG | + | chr2_2:27313011-27313030 | Msa0246250:CDS | 60.0% | |
| TGATTGCCGTGCAGGCCAAG+AGG | + | chr2_2:27313734-27313753 | Msa0246250:intron | 60.0% | |
| GATTGCCGTGCAGGCCAAGA+GGG | + | chr2_2:27313735-27313754 | Msa0246250:intron | 60.0% | |
| TCACTCCCTCTTGGCCTGCA+CGG | - | chr2_2:27313743-27313762 | None:intergenic | 60.0% | |
| GCGAAGCAGGGAGTGACTCT+TGG | + | chr2_2:27313849-27313868 | Msa0246250:CDS | 60.0% | |
| ! | GGATCCGCTGGGTAGGTTGG+TGG | + | chr2_2:27309539-27309558 | Msa0246250:CDS | 65.0% |
| !! | ACTGGTGGTGGTCGCGAAGC+AGG | + | chr2_2:27313836-27313855 | Msa0246250:CDS | 65.0% |
| !! | CTGGTGGTGGTCGCGAAGCA+GGG | + | chr2_2:27313837-27313856 | Msa0246250:CDS | 65.0% |
| CCTCCGCGCCCACCTACAAC+AGG | - | chr2_2:27312656-27312675 | None:intergenic | 70.0% | |
| CCTGTTGTAGGTGGGCGCGG+AGG | + | chr2_2:27312653-27312672 | Msa0246250:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 27308287 | 27314383 | 27308287 | ID=Msa0246250;Name=Msa0246250 |
| chr2_2 | mRNA | 27308287 | 27314383 | 27308287 | ID=Msa0246250-mRNA-1;Parent=Msa0246250;Name=Msa0246250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=88|1|1|1|1|1|14|309|576 |
| chr2_2 | exon | 27308287 | 27308713 | 27308287 | ID=Msa0246250-mRNA-1:exon:9905;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27309276 | 27309362 | 27309276 | ID=Msa0246250-mRNA-1:exon:9906;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27309477 | 27309608 | 27309477 | ID=Msa0246250-mRNA-1:exon:9907;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27310625 | 27310697 | 27310625 | ID=Msa0246250-mRNA-1:exon:9908;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27310869 | 27310891 | 27310869 | ID=Msa0246250-mRNA-1:exon:9909;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27310986 | 27311049 | 27310986 | ID=Msa0246250-mRNA-1:exon:9910;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27311217 | 27311262 | 27311217 | ID=Msa0246250-mRNA-1:exon:9911;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27312098 | 27312278 | 27312098 | ID=Msa0246250-mRNA-1:exon:9912;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27312663 | 27312839 | 27312663 | ID=Msa0246250-mRNA-1:exon:9913;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27312937 | 27313101 | 27312937 | ID=Msa0246250-mRNA-1:exon:9914;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27313262 | 27313402 | 27313262 | ID=Msa0246250-mRNA-1:exon:9915;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27313487 | 27313584 | 27313487 | ID=Msa0246250-mRNA-1:exon:9916;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27313748 | 27313897 | 27313748 | ID=Msa0246250-mRNA-1:exon:9917;Parent=Msa0246250-mRNA-1 |
| chr2_2 | exon | 27314020 | 27314383 | 27314020 | ID=Msa0246250-mRNA-1:exon:9918;Parent=Msa0246250-mRNA-1 |
| chr2_2 | five_prime_UTR | 27308287 | 27308374 | 27308287 | ID=Msa0246250-mRNA-1:five_prime_utr;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27308375 | 27308713 | 27308375 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27309276 | 27309362 | 27309276 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27309477 | 27309608 | 27309477 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27310625 | 27310697 | 27310625 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27310869 | 27310891 | 27310869 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27310986 | 27311049 | 27310986 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27311217 | 27311262 | 27311217 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27312098 | 27312278 | 27312098 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27312663 | 27312839 | 27312663 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27312937 | 27313101 | 27312937 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27313262 | 27313402 | 27313262 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27313487 | 27313584 | 27313487 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27313748 | 27313897 | 27313748 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | CDS | 27314020 | 27314074 | 27314020 | ID=Msa0246250-mRNA-1:cds;Parent=Msa0246250-mRNA-1 |
| chr2_2 | three_prime_UTR | 27314075 | 27314383 | 27314075 | ID=Msa0246250-mRNA-1:three_prime_utr;Parent=Msa0246250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
