Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536160 | KEH28564.1 | 62.687 | 134 | 29 | 6 | 1 | 116 | 1 | 131 | 5.64e-25 | 105 |
| Msa0536160 | KEH28564.1 | 86.154 | 130 | 13 | 2 | 102 | 227 | 3 | 131 | 9.44e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536160 | A0A072UFN5 | 62.687 | 134 | 29 | 6 | 1 | 116 | 1 | 131 | 2.69e-25 | 105 |
| Msa0536160 | A0A072UFN5 | 86.154 | 130 | 13 | 2 | 102 | 227 | 3 | 131 | 4.51e-49 | 166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0119440 | Msa0536160 | 0.818941 | 1.507371e-52 | -8.615850e-47 |
| Msa0472770 | Msa0536160 | 0.805307 | 1.422207e-49 | -8.615850e-47 |
| Msa0536160 | Msa0659790 | 0.816988 | 4.162776e-52 | -8.615850e-47 |
| Msa0536160 | Msa0748660 | 0.811904 | 5.543579e-51 | -8.615850e-47 |
| Msa0536160 | Msa0764920 | 0.816276 | 6.010844e-52 | -8.615850e-47 |
| Msa0536160 | Msa0786070 | 0.824721 | 6.922850e-54 | -8.615850e-47 |
| Msa0536160 | Msa0823440 | 0.802673 | 5.017011e-49 | -8.615850e-47 |
| Msa0536160 | Msa1285200 | 0.804015 | 2.646269e-49 | -8.615850e-47 |
| Msa0536160 | Msa1421900 | 0.809183 | 2.146386e-50 | -8.615850e-47 |
| Msa0536160 | Msa1462470 | 0.817727 | 2.838964e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536160 | MtrunA17_Chr4g0001891 | 66.216 | 148 | 27 | 3 | 102 | 227 | 3 | 149 | 3.44e-45 | 147 |
| Msa0536160 | MtrunA17_Chr4g0001891 | 56.579 | 152 | 27 | 5 | 1 | 116 | 1 | 149 | 4.74e-26 | 99.0 |
| Msa0536160 | MtrunA17_Chr4g0001901 | 88.889 | 126 | 14 | 0 | 102 | 227 | 3 | 128 | 1.64e-44 | 145 |
| Msa0536160 | MtrunA17_Chr4g0001901 | 63.846 | 130 | 31 | 3 | 1 | 116 | 1 | 128 | 8.27e-23 | 89.7 |
| Msa0536160 | MtrunA17_Chr4g0001881 | 47.899 | 119 | 43 | 3 | 128 | 227 | 15 | 133 | 3.07e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAGCACATGAACTTAA+TGG | 0.248141 | 4_1:-12955055 | Msa0536160:CDS |
| AAACAAGCACATGAACTTAA+TGG | 0.248141 | 4_1:-12958105 | Msa0536160:CDS |
| ATTAAGTTCATGTGCTTGTT+TGG | 0.314097 | 4_1:+12955057 | None:intergenic |
| GCACATGAACTTAATGGAAA+TGG | 0.373587 | 4_1:-12955049 | Msa0536160:CDS |
| GCACATGAACTTAATGGAAA+TGG | 0.373587 | 4_1:-12958099 | Msa0536160:CDS |
| ATAAGAAAAGGAGGAGGAAT+AGG | 0.376818 | 4_1:-12954944 | Msa0536160:CDS |
| ATAAGAAAAGGAGGAGGAAT+AGG | 0.376818 | 4_1:-12957994 | Msa0536160:intron |
| ATTATCGGTGCTGGAGTTAT+CGG | 0.395260 | 4_1:-12954890 | Msa0536160:CDS |
| ATTATCGGTGCTGGAGTTAT+CGG | 0.395260 | 4_1:-12957940 | Msa0536160:CDS |
| TAATGATGATGCAGAACTAT+TGG | 0.399049 | 4_1:+12954835 | None:intergenic |
| TAATGATGATGCAGAACTAT+TGG | 0.399049 | 4_1:+12957885 | None:intergenic |
| GGAGGAATAGGCAGAGGAAT+TGG | 0.409519 | 4_1:-12954932 | Msa0536160:CDS |
| GGAGGAATAGGCAGAGGAAT+TGG | 0.409519 | 4_1:-12957982 | Msa0536160:CDS |
| GGAGCGGGTGCTGGAATTAT+CGG | 0.417075 | 4_1:-12954905 | Msa0536160:CDS |
| GGAGCGGGTGCTGGAATTAT+CGG | 0.417075 | 4_1:-12957955 | Msa0536160:CDS |
| AGAGGAATTGGCAGAGGAGC+GGG | 0.433946 | 4_1:-12954920 | Msa0536160:CDS |
| AGAGGAATTGGCAGAGGAGC+GGG | 0.433946 | 4_1:-12957970 | Msa0536160:CDS |
| ATTGGCAGAGGAGCGGGTGC+TGG | 0.442693 | 4_1:-12954914 | Msa0536160:CDS |
| ATTGGCAGAGGAGCGGGTGC+TGG | 0.442693 | 4_1:-12957964 | Msa0536160:CDS |
| ATCTTGTTCATTTGATATGT+TGG | 0.442923 | 4_1:+12955087 | None:intergenic |
| ATCTTGTTCATTTGATATGT+TGG | 0.442923 | 4_1:+12958137 | None:intergenic |
| GCGGGTCATGCGCCTATGAC+AGG | 0.488149 | 4_1:-12957918 | Msa0536160:CDS |
| TCTGCATCATCATTATCTGC+AGG | 0.490646 | 4_1:-12954827 | Msa0536160:CDS |
| CTATCTGTTACCATAAGAAA+AGG | 0.494904 | 4_1:-12954956 | Msa0536160:CDS |
| GGTGCTGGAATTATCGGTGC+TGG | 0.503051 | 4_1:-12954899 | Msa0536160:CDS |
| GGTGCTGGAATTATCGGTGC+TGG | 0.503051 | 4_1:-12957949 | Msa0536160:CDS |
| TCTGCATCATCATTATCTGC+AGG | 0.504126 | 4_1:-12957877 | Msa0536160:CDS |
| GGAGTGATGACTCCTGTCAT+AGG | 0.507291 | 4_1:+12954856 | None:intergenic |
| GGAGTGATGACTCCTGTCAT+AGG | 0.507291 | 4_1:+12957906 | None:intergenic |
| GAACCACAGAGTTGCGATGA+TGG | 0.507304 | 4_1:-12955002 | Msa0536160:CDS |
| GAACCACAGAGTTGCGATGA+TGG | 0.507304 | 4_1:-12958052 | Msa0536160:CDS |
| GCGGGTCATCCGCCTATGAC+AGG | 0.527211 | 4_1:-12954868 | Msa0536160:CDS |
| AAAGGAGGAGGAATAGGCAG+AGG | 0.534351 | 4_1:-12954938 | Msa0536160:CDS |
| AAAGGAGGAGGAATAGGCAG+AGG | 0.534351 | 4_1:-12957988 | Msa0536160:intron |
| GAGCTCTTGAAATGATCAGA+AGG | 0.576553 | 4_1:+12955113 | None:intergenic |
| GAGCTCTTGAAATGATCAGA+AGG | 0.576553 | 4_1:+12958163 | None:intergenic |
| ATAGGCAGAGGAATTGGCAG+AGG | 0.585765 | 4_1:-12954926 | Msa0536160:CDS |
| ATAGGCAGAGGAATTGGCAG+AGG | 0.585765 | 4_1:-12957976 | Msa0536160:CDS |
| ATCGGTGCTGGAGTTATCGG+CGG | 0.587257 | 4_1:-12954887 | Msa0536160:CDS |
| ATCGGTGCTGGAGTTATCGG+CGG | 0.587257 | 4_1:-12957937 | Msa0536160:CDS |
| CTGCATCATCATTATCTGCA+GGG | 0.600220 | 4_1:-12954826 | Msa0536160:CDS |
| CTGCATCATCATTATCTGCA+GGG | 0.603957 | 4_1:-12957876 | Msa0536160:CDS |
| CAGAGGAATTGGCAGAGGAG+CGG | 0.605437 | 4_1:-12954921 | Msa0536160:CDS |
| CAGAGGAATTGGCAGAGGAG+CGG | 0.605437 | 4_1:-12957971 | Msa0536160:CDS |
| TCTGTTACCATAAGAAAAGG+AGG | 0.631131 | 4_1:-12954953 | Msa0536160:CDS |
| ACTTAATGGAAATGGAAACA+TGG | 0.633060 | 4_1:-12955041 | Msa0536160:CDS |
| ACTTAATGGAAATGGAAACA+TGG | 0.633060 | 4_1:-12958091 | Msa0536160:CDS |
| TCGGTGCTGGAGTTATCGGC+GGG | 0.638526 | 4_1:-12954886 | Msa0536160:CDS |
| TCGGTGCTGGAGTTATCGGC+GGG | 0.638526 | 4_1:-12957936 | Msa0536160:CDS |
| TTTCCATCATCGCAACTCTG+TGG | 0.639342 | 4_1:+12954999 | None:intergenic |
| TTTCCATCATCGCAACTCTG+TGG | 0.639342 | 4_1:+12958049 | None:intergenic |
| GTTACCATAAGAAAAGGAGG+AGG | 0.643572 | 4_1:-12954950 | Msa0536160:CDS |
| GTGATGACTCCTGTCATAGG+CGG | 0.711939 | 4_1:+12954859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAAATTTATTTTAACA+GGG | + | chr4_1:12956054-12956073 | None:intergenic | 10.0% |
| !!! | TAAACAAAATTTATTTTAAC+AGG | + | chr4_1:12956055-12956074 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr4_1:12956083-12956102 | None:intergenic | 10.0% |
| !! | TTTGAAAATTATATATAATC+TGG | - | chr4_1:12956775-12956794 | Msa0536160:intron | 10.0% |
| !! | TTTGTTTAAAAAATATCAAA+GGG | - | chr4_1:12957106-12957125 | Msa0536160:intron | 10.0% |
| !!! | TATTTTCAGATTATTTAAAT+TGG | + | chr4_1:12957320-12957339 | None:intergenic | 10.0% |
| !!! | TTTAAATTGTTTTTCAAATA+AGG | - | chr4_1:12957396-12957415 | Msa0536160:intron | 10.0% |
| !! | AATTTAAACATAGATCAATT+GGG | + | chr4_1:12955874-12955893 | None:intergenic | 15.0% |
| !! | AAATTTAAACATAGATCAAT+TGG | + | chr4_1:12955875-12955894 | None:intergenic | 15.0% |
| !! | AATTGATCTATGTTTAAATT+TGG | - | chr4_1:12955874-12955893 | Msa0536160:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr4_1:12955992-12956011 | None:intergenic | 15.0% |
| !!! | TAAGTAAATTTTGTTTTGTA+GGG | + | chr4_1:12956021-12956040 | None:intergenic | 15.0% |
| !!! | ATAAGTAAATTTTGTTTTGT+AGG | + | chr4_1:12956022-12956041 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr4_1:12956214-12956233 | Msa0536160:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4_1:12956249-12956268 | Msa0536160:intron | 15.0% |
| !!! | AATTGTTTTTGAATTTTTTC+TGG | - | chr4_1:12956943-12956962 | Msa0536160:intron | 15.0% |
| !!! | ATTGTTTTTGAATTTTTTCT+GGG | - | chr4_1:12956944-12956963 | Msa0536160:intron | 15.0% |
| !! | ATGAAAAAACAAAAATTAAG+TGG | - | chr4_1:12957034-12957053 | Msa0536160:intron | 15.0% |
| !!! | TTGATATTTTTTAAACAAAG+AGG | + | chr4_1:12957105-12957124 | None:intergenic | 15.0% |
| !!! | CTTTGTTTAAAAAATATCAA+AGG | - | chr4_1:12957105-12957124 | Msa0536160:intron | 15.0% |
| !!! | CTAATTTCTTGTTTTTATTT+TGG | + | chr4_1:12957281-12957300 | None:intergenic | 15.0% |
| !! | ATAAAAACAAGAAATTAGTT+AGG | - | chr4_1:12957283-12957302 | Msa0536160:intron | 15.0% |
| !! | TAAAAACAAGAAATTAGTTA+GGG | - | chr4_1:12957284-12957303 | Msa0536160:intron | 15.0% |
| !! | AAAATAAAATGATGATTGAT+AGG | + | chr4_1:12957485-12957504 | None:intergenic | 15.0% |
| !!! | TTATTTTATGTTTGAGCTTT+TGG | - | chr4_1:12955136-12955155 | Msa0536160:CDS | 20.0% |
| !! | TAATTACAATAAGTGATATC+AGG | + | chr4_1:12955902-12955921 | None:intergenic | 20.0% |
| !! | AATTAATCTTCATTCAATCA+AGG | - | chr4_1:12955917-12955936 | Msa0536160:intron | 20.0% |
| !! | ATTAATCTTCATTCAATCAA+GGG | - | chr4_1:12955918-12955937 | Msa0536160:intron | 20.0% |
| !! | ATGTTAAGAACGTTATTAAA+AGG | + | chr4_1:12956279-12956298 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4_1:12956303-12956322 | None:intergenic | 20.0% |
| !! | AAACAAATTTAGATTGAGTA+AGG | - | chr4_1:12956344-12956363 | Msa0536160:intron | 20.0% |
| !!! | ATAATACTCTATTGATTGAA+GGG | + | chr4_1:12956479-12956498 | None:intergenic | 20.0% |
| !!! | AATAATACTCTATTGATTGA+AGG | + | chr4_1:12956480-12956499 | None:intergenic | 20.0% |
| !! | AAATATCAAAGGGTTAAAAT+TGG | - | chr4_1:12957116-12957135 | Msa0536160:intron | 20.0% |
| !!! | ATATATTTTTTGACAAACAG+AGG | - | chr4_1:12957214-12957233 | Msa0536160:intron | 20.0% |
| !! | AAAAACAAGAAATTAGTTAG+GGG | - | chr4_1:12957285-12957304 | Msa0536160:intron | 20.0% |
| !! | GTTATGTTTGATGAATTAAA+GGG | + | chr4_1:12957727-12957746 | None:intergenic | 20.0% |
| !! | AGTTATGTTTGATGAATTAA+AGG | + | chr4_1:12957728-12957747 | None:intergenic | 20.0% |
| !! | TGTTAAGGTTGTAAATAATT+GGG | + | chr4_1:12957809-12957828 | None:intergenic | 20.0% |
| !! | ATGTTAAGGTTGTAAATAAT+TGG | + | chr4_1:12957810-12957829 | None:intergenic | 20.0% |
| !!! | TTATTTTATGTTTGAGCTTT+TGG | - | chr4_1:12955136-12955155 | Msa0536160:CDS | 20.0% |
| ! | ATCTTGTTCATTTGATATGT+TGG | + | chr4_1:12954833-12954852 | None:intergenic | 25.0% |
| ! | ATAACATGATACTAAACTAG+AGG | + | chr4_1:12955184-12955203 | None:intergenic | 25.0% |
| !! | ATGTTATGTAGCTTTTGTAT+AGG | - | chr4_1:12955197-12955216 | Msa0536160:intron | 25.0% |
| ! | GTTAAACATAGTATTTGTGT+AGG | + | chr4_1:12955223-12955242 | None:intergenic | 25.0% |
| ! | TAAATTTCGACATCATACTA+TGG | + | chr4_1:12955331-12955350 | None:intergenic | 25.0% |
| ! | TTATATGTATTTACCCTTCT+AGG | - | chr4_1:12955625-12955644 | Msa0536160:intron | 25.0% |
| !! | TCAAGGGTTAATTATGTTTT+TGG | - | chr4_1:12955934-12955953 | Msa0536160:intron | 25.0% |
| ! | AAGTAAGAACTAAACTTACA+AGG | - | chr4_1:12956420-12956439 | Msa0536160:intron | 25.0% |
| !! | TGAAGGGTAAATTATGTTTT+TGG | + | chr4_1:12956463-12956482 | None:intergenic | 25.0% |
| ! | TTATGGTATTATCACTACAA+TGG | - | chr4_1:12956525-12956544 | Msa0536160:intron | 25.0% |
| ! | AATTTAACTCCAAATGTCTA+TGG | + | chr4_1:12957186-12957205 | None:intergenic | 25.0% |
| ! | CAAAATTACACAATCAGAAA+CGG | - | chr4_1:12957444-12957463 | Msa0536160:intron | 25.0% |
| !!! | GTTGATTTTTTAATACGTCA+TGG | + | chr4_1:12957511-12957530 | None:intergenic | 25.0% |
| !!! | CATATTTTAATTATGAGACG+CGG | - | chr4_1:12957607-12957626 | Msa0536160:intron | 25.0% |
| ! | AAAAATTTCCGAGAAAGAAA+GGG | + | chr4_1:12957663-12957682 | None:intergenic | 25.0% |
| ! | AAAAAATTTCCGAGAAAGAA+AGG | + | chr4_1:12957664-12957683 | None:intergenic | 25.0% |
| ! | TGGGAAAAGCAATATATATA+AGG | + | chr4_1:12957702-12957721 | None:intergenic | 25.0% |
| ! | ATCTTGTTCATTTGATATGT+TGG | + | chr4_1:12954833-12954852 | None:intergenic | 25.0% |
| AAACAAGCACATGAACTTAA+TGG | - | chr4_1:12954862-12954881 | Msa0536160:CDS | 30.0% | |
| ACTTAATGGAAATGGAAACA+TGG | - | chr4_1:12954876-12954895 | Msa0536160:CDS | 30.0% | |
| CTATCTGTTACCATAAGAAA+AGG | - | chr4_1:12954961-12954980 | Msa0536160:CDS | 30.0% | |
| ! | TAATGATGATGCAGAACTAT+TGG | + | chr4_1:12955085-12955104 | None:intergenic | 30.0% |
| AATGTTGAGACACAAACATA+AGG | + | chr4_1:12955117-12955136 | None:intergenic | 30.0% | |
| ACTATGTTTAACGTATACGT+CGG | - | chr4_1:12955231-12955250 | Msa0536160:intron | 30.0% | |
| TCATTGACACAAAGTGAAAT+AGG | + | chr4_1:12955472-12955491 | None:intergenic | 30.0% | |
| TCAACAGTTGACATTTATTG+CGG | - | chr4_1:12955534-12955553 | Msa0536160:intron | 30.0% | |
| TAAACATAGATCAATTGGGA+AGG | + | chr4_1:12955870-12955889 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGTCCCTATAAAA+TGG | - | chr4_1:12955948-12955967 | Msa0536160:intron | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr4_1:12955977-12955996 | None:intergenic | 30.0% | |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr4_1:12956117-12956136 | Msa0536160:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4_1:12956252-12956271 | Msa0536160:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr4_1:12956375-12956394 | Msa0536160:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr4_1:12956376-12956395 | Msa0536160:intron | 30.0% |
| TGTAGTGATAATACCATAAC+AGG | + | chr4_1:12956524-12956543 | None:intergenic | 30.0% | |
| ATTTACAAGTCAACACAATG+TGG | + | chr4_1:12956675-12956694 | None:intergenic | 30.0% | |
| TGTTAAAGATGATGAAGAAG+AGG | - | chr4_1:12956993-12957012 | Msa0536160:intron | 30.0% | |
| ! | TTTTAAACAAAGAGGATCGT+TGG | + | chr4_1:12957097-12957116 | None:intergenic | 30.0% |
| ! | TTGTCGATTATCTATAACGT+TGG | - | chr4_1:12957156-12957175 | Msa0536160:intron | 30.0% |
| AAAATTTCCGAGAAAGAAAG+GGG | + | chr4_1:12957662-12957681 | None:intergenic | 30.0% | |
| ! | TTTGATGAATTAAAGGGTGT+GGG | + | chr4_1:12957721-12957740 | None:intergenic | 30.0% |
| ! | GAACAATTTTCCAGATTGTT+TGG | + | chr4_1:12957763-12957782 | None:intergenic | 30.0% |
| ATTAAGTTCATGTGCTTGTT+TGG | + | chr4_1:12954863-12954882 | None:intergenic | 30.0% | |
| AAACAAGCACATGAACTTAA+TGG | - | chr4_1:12954862-12954881 | Msa0536160:CDS | 30.0% | |
| ACTTAATGGAAATGGAAACA+TGG | - | chr4_1:12954876-12954895 | Msa0536160:CDS | 30.0% | |
| CTATCTGTTACCATAAGAAA+AGG | - | chr4_1:12954961-12954980 | Msa0536160:CDS | 30.0% | |
| ! | TAATGATGATGCAGAACTAT+TGG | + | chr4_1:12955085-12955104 | None:intergenic | 30.0% |
| GCACATGAACTTAATGGAAA+TGG | - | chr4_1:12954868-12954887 | Msa0536160:CDS | 35.0% | |
| TCTGTTACCATAAGAAAAGG+AGG | - | chr4_1:12954964-12954983 | Msa0536160:CDS | 35.0% | |
| ! | TATTCCTCCTCCTTTTCTTA+TGG | + | chr4_1:12954974-12954993 | None:intergenic | 35.0% |
| ATAAGAAAAGGAGGAGGAAT+AGG | - | chr4_1:12954973-12954992 | Msa0536160:CDS | 35.0% | |
| ! | AATTGATAGCACTCAGACAA+AGG | + | chr4_1:12955297-12955316 | None:intergenic | 35.0% |
| ! | TGACTTTTGATGCACATGTT+TGG | - | chr4_1:12955391-12955410 | Msa0536160:intron | 35.0% |
| CAAATCAGTACCAAACAAAG+CGG | - | chr4_1:12955696-12955715 | Msa0536160:intron | 35.0% | |
| AAAGCGGTCAATACTCAATA+GGG | - | chr4_1:12955712-12955731 | Msa0536160:intron | 35.0% | |
| TCTGTTATAAGTGTTCGTTG+AGG | - | chr4_1:12955814-12955833 | Msa0536160:intron | 35.0% | |
| CTGTTATAAGTGTTCGTTGA+GGG | - | chr4_1:12955815-12955834 | Msa0536160:intron | 35.0% | |
| !! | TAGAAGGTCGCCATTTTATA+GGG | + | chr4_1:12955961-12955980 | None:intergenic | 35.0% |
| !! | TTAGAAGGTCGCCATTTTAT+AGG | + | chr4_1:12955962-12955981 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr4_1:12956435-12956454 | Msa0536160:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr4_1:12956436-12956455 | Msa0536160:intron | 35.0% |
| AAAGATGATGAAGAAGAGGA+AGG | - | chr4_1:12956997-12957016 | Msa0536160:intron | 35.0% | |
| TAACTCCTAAAACGTTCGTT+TGG | + | chr4_1:12957253-12957272 | None:intergenic | 35.0% | |
| !!! | ATTTTAATTATGAGACGCGG+CGG | - | chr4_1:12957610-12957629 | Msa0536160:intron | 35.0% |
| GTTTGATGAATTAAAGGGTG+TGG | + | chr4_1:12957722-12957741 | None:intergenic | 35.0% | |
| TAAGCTCTTTCCAAACAATC+TGG | - | chr4_1:12957750-12957769 | Msa0536160:intron | 35.0% | |
| !! | GGGATTTGAGATTTTGAACT+TGG | + | chr4_1:12957789-12957808 | None:intergenic | 35.0% |
| GAAGCATAAGCTTCATGTTA+AGG | + | chr4_1:12957824-12957843 | None:intergenic | 35.0% | |
| GCACATGAACTTAATGGAAA+TGG | - | chr4_1:12954868-12954887 | Msa0536160:CDS | 35.0% | |
| TCTGTTACCATAAGAAAAGG+AGG | - | chr4_1:12954964-12954983 | Msa0536160:CDS | 35.0% | |
| ! | TATTCCTCCTCCTTTTCTTA+TGG | + | chr4_1:12954974-12954993 | None:intergenic | 35.0% |
| ATAAGAAAAGGAGGAGGAAT+AGG | - | chr4_1:12954973-12954992 | Msa0536160:CDS | 35.0% | |
| GAGCTCTTGAAATGATCAGA+AGG | + | chr4_1:12954807-12954826 | None:intergenic | 40.0% | |
| GTTACCATAAGAAAAGGAGG+AGG | - | chr4_1:12954967-12954986 | Msa0536160:CDS | 40.0% | |
| !! | ATTATCGGTGCTGGAGTTAT+CGG | - | chr4_1:12955027-12955046 | Msa0536160:CDS | 40.0% |
| TCTGCATCATCATTATCTGC+AGG | - | chr4_1:12955090-12955109 | Msa0536160:CDS | 40.0% | |
| CTGCATCATCATTATCTGCA+GGG | - | chr4_1:12955091-12955110 | Msa0536160:CDS | 40.0% | |
| GTGTCAATGAAACAGTCATG+AGG | - | chr4_1:12955482-12955501 | Msa0536160:intron | 40.0% | |
| CAATGAAACAGTCATGAGGT+TGG | - | chr4_1:12955486-12955505 | Msa0536160:intron | 40.0% | |
| ACTCGTGATCAATGAAGAGT+TGG | - | chr4_1:12955581-12955600 | Msa0536160:intron | 40.0% | |
| ACCTTTGTGCAAACCTAGAA+GGG | + | chr4_1:12955641-12955660 | None:intergenic | 40.0% | |
| AACCTTTGTGCAAACCTAGA+AGG | + | chr4_1:12955642-12955661 | None:intergenic | 40.0% | |
| !! | TCGTTTTTCAGACACAAGTC+AGG | + | chr4_1:12955669-12955688 | None:intergenic | 40.0% |
| !! | TGAGTATTGACCGCTTTGTT+TGG | + | chr4_1:12955709-12955728 | None:intergenic | 40.0% |
| CAAAGCGGTCAATACTCAAT+AGG | - | chr4_1:12955711-12955730 | Msa0536160:intron | 40.0% | |
| TCTTTCGTCTTGTCCTGTTA+TGG | - | chr4_1:12956508-12956527 | Msa0536160:intron | 40.0% | |
| GCAAGAAACGATTCTTCCTT+GGG | - | chr4_1:12956547-12956566 | Msa0536160:intron | 40.0% | |
| TCGAGTAGTTCTTGAGTGAA+CGG | + | chr4_1:12956586-12956605 | None:intergenic | 40.0% | |
| AAGAAGAGGAAGGAAGAAGA+TGG | - | chr4_1:12957007-12957026 | Msa0536160:intron | 40.0% | |
| ATTAAGTGGTGATCGTTCAC+TGG | - | chr4_1:12957048-12957067 | Msa0536160:intron | 40.0% | |
| ! | GTTGGTTCACCATAGACATT+TGG | - | chr4_1:12957174-12957193 | Msa0536160:intron | 40.0% |
| ACAAACAGAGGTGAACTTGA+GGG | - | chr4_1:12957226-12957245 | Msa0536160:intron | 40.0% | |
| AAGAAAGGGGAAGATACCAA+GGG | + | chr4_1:12957649-12957668 | None:intergenic | 40.0% | |
| AAAGAAAGGGGAAGATACCA+AGG | + | chr4_1:12957650-12957669 | None:intergenic | 40.0% | |
| GTATCTTCCCCTTTCTTTCT+CGG | - | chr4_1:12957652-12957671 | Msa0536160:intron | 40.0% | |
| GAGCTCTTGAAATGATCAGA+AGG | + | chr4_1:12954807-12954826 | None:intergenic | 40.0% | |
| GTTACCATAAGAAAAGGAGG+AGG | - | chr4_1:12954967-12954986 | Msa0536160:CDS | 40.0% | |
| !! | ATTATCGGTGCTGGAGTTAT+CGG | - | chr4_1:12955027-12955046 | Msa0536160:CDS | 40.0% |
| TCTGCATCATCATTATCTGC+AGG | - | chr4_1:12955090-12955109 | Msa0536160:CDS | 40.0% | |
| CTGCATCATCATTATCTGCA+GGG | - | chr4_1:12955091-12955110 | Msa0536160:CDS | 40.0% | |
| TTTCCATCATCGCAACTCTG+TGG | + | chr4_1:12954921-12954940 | None:intergenic | 45.0% | |
| CGTGATCAATGAAGAGTTGG+AGG | - | chr4_1:12955584-12955603 | Msa0536160:intron | 45.0% | |
| ACCCTTCTAGGTTTGCACAA+AGG | - | chr4_1:12955637-12955656 | Msa0536160:intron | 45.0% | |
| GGCAAGAAACGATTCTTCCT+TGG | - | chr4_1:12956546-12956565 | Msa0536160:intron | 45.0% | |
| !! | ACTACTCGAGAGCATTGAAC+AGG | - | chr4_1:12956597-12956616 | Msa0536160:intron | 45.0% |
| GCTACAGCAGAGAAATCAAC+AGG | - | chr4_1:12956628-12956647 | Msa0536160:intron | 45.0% | |
| GACAAACAGAGGTGAACTTG+AGG | - | chr4_1:12957225-12957244 | Msa0536160:intron | 45.0% | |
| ! | AGGGACCAAACGAACGTTTT+AGG | - | chr4_1:12957245-12957264 | Msa0536160:intron | 45.0% |
| TTTGCCACATCAACGTCATG+TGG | - | chr4_1:12957420-12957439 | Msa0536160:intron | 45.0% | |
| TTGTCCACATGACGTTGATG+TGG | + | chr4_1:12957427-12957446 | None:intergenic | 45.0% | |
| TTTCCATCATCGCAACTCTG+TGG | + | chr4_1:12954921-12954940 | None:intergenic | 45.0% | |
| GAACCACAGAGTTGCGATGA+TGG | - | chr4_1:12954915-12954934 | Msa0536160:CDS | 50.0% | |
| AAAGGAGGAGGAATAGGCAG+AGG | - | chr4_1:12954979-12954998 | Msa0536160:CDS | 50.0% | |
| GGAGGAATAGGCAGAGGAAT+TGG | - | chr4_1:12954985-12955004 | Msa0536160:CDS | 50.0% | |
| ATAGGCAGAGGAATTGGCAG+AGG | - | chr4_1:12954991-12955010 | Msa0536160:CDS | 50.0% | |
| GGAGTGATGACTCCTGTCAT+AGG | + | chr4_1:12955064-12955083 | None:intergenic | 50.0% | |
| GCACATGTTTGGCAGAACAC+TGG | - | chr4_1:12955402-12955421 | Msa0536160:intron | 50.0% | |
| ! | CGGAGTATCATCAGATCCCA+AGG | + | chr4_1:12956566-12956585 | None:intergenic | 50.0% |
| ! | CGGCTCATTTTGTCATCCCT+TGG | - | chr4_1:12957630-12957649 | Msa0536160:intron | 50.0% |
| GAACCACAGAGTTGCGATGA+TGG | - | chr4_1:12954915-12954934 | Msa0536160:CDS | 50.0% | |
| AAAGGAGGAGGAATAGGCAG+AGG | - | chr4_1:12954979-12954998 | Msa0536160:CDS | 50.0% | |
| GGAGGAATAGGCAGAGGAAT+TGG | - | chr4_1:12954985-12955004 | Msa0536160:CDS | 50.0% | |
| ATAGGCAGAGGAATTGGCAG+AGG | - | chr4_1:12954991-12955010 | Msa0536160:CDS | 50.0% | |
| GTGATGACTCCTGTCATAGG+CGG | + | chr4_1:12955061-12955080 | None:intergenic | 50.0% | |
| GGAGTGATGACTCCTGTCAT+AGG | + | chr4_1:12955064-12955083 | None:intergenic | 50.0% | |
| CAGAGGAATTGGCAGAGGAG+CGG | - | chr4_1:12954996-12955015 | Msa0536160:CDS | 55.0% | |
| AGAGGAATTGGCAGAGGAGC+GGG | - | chr4_1:12954997-12955016 | Msa0536160:CDS | 55.0% | |
| !! | GGAGCGGGTGCTGGAATTAT+CGG | - | chr4_1:12955012-12955031 | Msa0536160:CDS | 55.0% |
| ! | GGTGCTGGAATTATCGGTGC+TGG | - | chr4_1:12955018-12955037 | Msa0536160:CDS | 55.0% |
| !! | ATCGGTGCTGGAGTTATCGG+CGG | - | chr4_1:12955030-12955049 | Msa0536160:CDS | 55.0% |
| CAGAGGAATTGGCAGAGGAG+CGG | - | chr4_1:12954996-12955015 | Msa0536160:CDS | 55.0% | |
| AGAGGAATTGGCAGAGGAGC+GGG | - | chr4_1:12954997-12955016 | Msa0536160:CDS | 55.0% | |
| !! | GGAGCGGGTGCTGGAATTAT+CGG | - | chr4_1:12955012-12955031 | Msa0536160:CDS | 55.0% |
| ! | GGTGCTGGAATTATCGGTGC+TGG | - | chr4_1:12955018-12955037 | Msa0536160:CDS | 55.0% |
| !! | ATCGGTGCTGGAGTTATCGG+CGG | - | chr4_1:12955030-12955049 | Msa0536160:CDS | 55.0% |
| !! | TCGGTGCTGGAGTTATCGGC+GGG | - | chr4_1:12955031-12955050 | Msa0536160:CDS | 60.0% |
| !! | TCGGTGCTGGAGTTATCGGC+GGG | - | chr4_1:12955031-12955050 | Msa0536160:CDS | 60.0% |
| ATTGGCAGAGGAGCGGGTGC+TGG | - | chr4_1:12955003-12955022 | Msa0536160:CDS | 65.0% | |
| GCGGGTCATGCGCCTATGAC+AGG | - | chr4_1:12955049-12955068 | Msa0536160:CDS | 65.0% | |
| ATTGGCAGAGGAGCGGGTGC+TGG | - | chr4_1:12955003-12955022 | Msa0536160:CDS | 65.0% | |
| GCGGGTCATCCGCCTATGAC+AGG | - | chr4_1:12958099-12958118 | Msa0536160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 12954775 | 12958214 | 12954775 | ID=Msa0536160;Name=Msa0536160 |
| chr4_1 | mRNA | 12954775 | 12958214 | 12954775 | ID=Msa0536160-mRNA-1;Parent=Msa0536160;Name=Msa0536160-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0|3|0|227 |
| chr4_1 | exon | 12958049 | 12958214 | 12958049 | ID=Msa0536160-mRNA-1:exon:4117;Parent=Msa0536160-mRNA-1 |
| chr4_1 | exon | 12957870 | 12958006 | 12957870 | ID=Msa0536160-mRNA-1:exon:4116;Parent=Msa0536160-mRNA-1 |
| chr4_1 | exon | 12954775 | 12955155 | 12954775 | ID=Msa0536160-mRNA-1:exon:4115;Parent=Msa0536160-mRNA-1 |
| chr4_1 | CDS | 12958049 | 12958214 | 12958049 | ID=Msa0536160-mRNA-1:cds;Parent=Msa0536160-mRNA-1 |
| chr4_1 | CDS | 12957870 | 12958006 | 12957870 | ID=Msa0536160-mRNA-1:cds;Parent=Msa0536160-mRNA-1 |
| chr4_1 | CDS | 12954775 | 12955155 | 12954775 | ID=Msa0536160-mRNA-1:cds;Parent=Msa0536160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
