AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1247540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247540 MtrunA17_Chr8g0362351 94.643 392 17 2 1 388 1 392 0.0 758
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247540 AT5G20220.2 62.890 353 118 5 44 386 37 386 2.49e-157 448
Msa1247540 AT5G20220.1 62.890 353 118 5 44 386 37 386 2.49e-157 448
Msa1247540 AT5G20220.4 62.890 353 118 5 44 386 53 402 4.89e-157 448
Msa1247540 AT5G20220.3 70.925 227 62 2 44 268 37 261 2.05e-115 337

Find 114 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTGTGTCCCTCTTTC+TGG 0.074714 8_2:-40697576 None:intergenic
CATGGGTGCTTTGAGGTTTA+AGG 0.161411 8_2:-40692511 None:intergenic
GAGAGTACCTGGGATGATTT+TGG 0.169950 8_2:-40692791 None:intergenic
AAAGAAATCTTTCATAGTTT+TGG 0.211900 8_2:-40696980 None:intergenic
AGTACCTTTCCATTACATTT+TGG 0.230276 8_2:-40694127 None:intergenic
ACTAATTAGCATTACTTAAC+AGG 0.255394 8_2:-40697756 None:intergenic
ACTGCGAGTGGCTGCTATTA+AGG 0.268863 8_2:+40695974 Msa1247540:CDS
TTTGCTAAATAGACCAGTTT+TGG 0.277779 8_2:-40695913 None:intergenic
TGTAGGCTATGTGGCGAAAA+AGG 0.312373 8_2:+40697376 Msa1247540:CDS
GCTCTGGAGATTGTGTTATA+TGG 0.322319 8_2:+40694658 Msa1247540:CDS
ATCAAACCATCCTTCAGTTC+TGG 0.336795 8_2:-40697337 None:intergenic
TGTAAAATATGTCGACAATA+TGG 0.344909 8_2:+40697469 Msa1247540:CDS
GAGGGCATGTCCTTCGGTTA+TGG 0.346475 8_2:-40697492 None:intergenic
TGACGATGAAGTTGACAAAT+TGG 0.351646 8_2:+40695509 Msa1247540:CDS
ATGGGTGCTTTGAGGTTTAA+GGG 0.367957 8_2:-40692510 None:intergenic
CAGAGTCTCAATGCCAAAAC+TGG 0.372220 8_2:+40695900 Msa1247540:intron
CTTGCTTATTCAAACTCTGT+TGG 0.375149 8_2:-40692595 None:intergenic
TTGCTTATTCAAACTCTGTT+GGG 0.379809 8_2:-40692594 None:intergenic
AGTCCTCCAGAGGATCTGTT+TGG 0.383750 8_2:+40692897 Msa1247540:CDS
AGAAAGAGGGACACAATATT+AGG 0.387492 8_2:+40697578 Msa1247540:CDS
TATTGGCCTCAATAAGATAT+AGG 0.396136 8_2:-40697679 None:intergenic
TTATAACTCTCCCATCACTA+TGG 0.402095 8_2:-40697435 None:intergenic
GTGCCTGAAGCGTGGGATCC+TGG 0.410753 8_2:-40695953 None:intergenic
GAAGAACATGCAATAAGTTA+AGG 0.416372 8_2:+40697407 Msa1247540:CDS
CCACCAGGATCCCACGCTTC+AGG 0.416740 8_2:+40695950 Msa1247540:CDS
CTAATCTTCAATCCAACTTC+AGG 0.418320 8_2:-40695585 None:intergenic
TCTTGCTGAAACAGTCCTCT+TGG 0.427492 8_2:-40696947 None:intergenic
GTCCTCCAGAGGATCTGTTT+GGG 0.428248 8_2:+40692898 Msa1247540:CDS
TCCAGAGGATCTGTTTGGGC+TGG 0.428928 8_2:+40692902 Msa1247540:CDS
TCCAGCCCAAACAGATCCTC+TGG 0.440999 8_2:-40692903 None:intergenic
CTGACTTGCCACCAGTGCTC+TGG 0.442348 8_2:+40694642 Msa1247540:CDS
TAACTTGAGGGCATGTCCTT+CGG 0.450194 8_2:-40697498 None:intergenic
CCAGATGAATGACTCATACT+TGG 0.455906 8_2:-40697839 None:intergenic
AGAGGATCTGTTTGGGCTGG+AGG 0.458444 8_2:+40692905 Msa1247540:CDS
GCTATGTCATGGGTGCTTTG+AGG 0.459799 8_2:-40692518 None:intergenic
CAAGGGAAAGATGATGATGA+TGG 0.460617 8_2:-40692547 None:intergenic
GCACTTGAGTTTCTAGAAAG+TGG 0.461633 8_2:-40697651 None:intergenic
AGTTATTTCAAATAAAAGAA+TGG 0.467754 8_2:+40697516 Msa1247540:CDS
TGAAGGATGGTTTGATTGAT+CGG 0.472656 8_2:+40697344 Msa1247540:CDS
CACTTGAGTTTCTAGAAAGT+GGG 0.472734 8_2:-40697650 None:intergenic
TATTGCATGTTCTTCTGTTG+TGG 0.480064 8_2:-40697399 None:intergenic
TTGTCCAAGTTGCCGAGGAA+GGG 0.480555 8_2:+40694054 Msa1247540:CDS
TCGTCATCCTTCACTTTGAG+TGG 0.487889 8_2:-40695492 None:intergenic
CAGTCGCCATCTCCTGAAGT+TGG 0.494080 8_2:+40695573 Msa1247540:CDS
TAACCCCTTCCTCGGCAACT+TGG 0.494338 8_2:-40694058 None:intergenic
ATGTCGATTGTGCCAGAAAG+AGG 0.495387 8_2:+40697564 Msa1247540:CDS
TCTCTGATATATTGTCCATT+CGG 0.495846 8_2:-40694025 None:intergenic
TCAGACTGTCCAAAATGTAA+TGG 0.499235 8_2:+40694118 Msa1247540:CDS
CCAAGTATGAGTCATTCATC+TGG 0.500065 8_2:+40697839 Msa1247540:three_prime_UTR
CTCTGGAGATTGTGTTATAT+GGG 0.503966 8_2:+40694659 Msa1247540:CDS
GGATCTGTTTGGGCTGGAGG+TGG 0.504817 8_2:+40692908 Msa1247540:CDS
CTTGTCCAAGTTGCCGAGGA+AGG 0.512071 8_2:+40694053 Msa1247540:CDS
CACTCGCAGTGCCTGAAGCG+TGG 0.519274 8_2:-40695961 None:intergenic
TTGGCAAGAATTCATGAACT+TGG 0.521936 8_2:-40692633 None:intergenic
AGAGAACCAAGGTCATGGTT+TGG 0.522416 8_2:+40694001 Msa1247540:CDS
TTGATCGGCGATTCACATGT+AGG 0.527264 8_2:+40697359 Msa1247540:CDS
CTTGAACCTATATCTTATTG+AGG 0.527428 8_2:+40697673 Msa1247540:three_prime_UTR
TCTATTCCACATTCTGTACA+AGG 0.527806 8_2:-40694085 None:intergenic
CACGCTTCAGGCACTGCGAG+TGG 0.530027 8_2:+40695962 Msa1247540:CDS
TGTCCAAGTTGCCGAGGAAG+GGG 0.533412 8_2:+40694055 Msa1247540:CDS
CAACTTCAGGAGATGGCGAC+TGG 0.535474 8_2:-40695572 None:intergenic
TTCCATCCCAAAATCATCCC+AGG 0.537995 8_2:+40692784 Msa1247540:CDS
GGAAATGTGAGAGAACGAAA+TGG 0.539000 8_2:-40692671 None:intergenic
TTCAATCCAACTTCAGGAGA+TGG 0.541796 8_2:-40695579 None:intergenic
AAGATGATGATGATGGGAAA+TGG 0.542216 8_2:-40692540 None:intergenic
ACATGTCCTAGTAGAATAGT+TGG 0.543441 8_2:+40697601 Msa1247540:CDS
ATGGAGTGTGAATCACTAGT+TGG 0.547078 8_2:-40692652 None:intergenic
TCAGTACCAACTATTCTACT+AGG 0.549951 8_2:-40697607 None:intergenic
GACAATATGGCCATAACCGA+AGG 0.550578 8_2:+40697482 Msa1247540:CDS
AGGTCATGGTTTGGTCCGAA+TGG 0.557253 8_2:+40694010 Msa1247540:CDS
ACTCGCAGTGCCTGAAGCGT+GGG 0.558483 8_2:-40695960 None:intergenic
AGAATTCATGAACTTGGCAG+TGG 0.559110 8_2:-40692627 None:intergenic
AAGGGAAAGATGATGATGAT+GGG 0.564145 8_2:-40692546 None:intergenic
CACAATCTCCAGAGCACTGG+TGG 0.564699 8_2:-40694650 None:intergenic
TTCGGACCAAACCATGACCT+TGG 0.565658 8_2:-40694007 None:intergenic
TATACTCCTTGTACAGAATG+TGG 0.574912 8_2:+40694079 Msa1247540:CDS
TAAGGATAAGCCATAGTGAT+GGG 0.578892 8_2:+40697425 Msa1247540:CDS
ACTGTGGACGTGAAGGACAT+AGG 0.580715 8_2:+40697302 Msa1247540:CDS
ATTGATTGAGCTCTCTCCCA+CGG 0.587172 8_2:-40694702 None:intergenic
ACACTACTGTCCAGAACTGA+AGG 0.588135 8_2:+40697327 Msa1247540:CDS
AAGGAGTATAACCCCTTCCT+CGG 0.591796 8_2:-40694066 None:intergenic
AAGGATGTTTGATGCACGAA+GGG 0.592607 8_2:-40692735 None:intergenic
TTAAGGATAAGCCATAGTGA+TGG 0.593339 8_2:+40697424 Msa1247540:CDS
TAACACAATCTCCAGAGCAC+TGG 0.599406 8_2:-40694653 None:intergenic
ACGAATGAAGATCATCCACC+AGG 0.599645 8_2:+40695935 Msa1247540:CDS
TAGATCTCCACTCAAAGTGA+AGG 0.599759 8_2:+40695485 Msa1247540:intron
AAAGGAAGAGATGAATGTTG+AGG 0.601741 8_2:-40692712 None:intergenic
ATGGGAAATGGCTATGTCAT+GGG 0.601853 8_2:-40692528 None:intergenic
TGTCGATTGTGCCAGAAAGA+GGG 0.602292 8_2:+40697565 Msa1247540:CDS
CTTCCTCGGCAACTTGGACA+AGG 0.602368 8_2:-40694052 None:intergenic
AATGTGGAATAGAACGATCT+AGG 0.605176 8_2:+40694095 Msa1247540:CDS
TGGAGGTGGAATTCAAGCCA+AGG 0.606226 8_2:+40692922 Msa1247540:CDS
TGTCAAAACTGTGGACGTGA+AGG 0.607699 8_2:+40697295 Msa1247540:CDS
CTGTCCAAAATGTAATGGAA+AGG 0.611504 8_2:+40694123 Msa1247540:CDS
CGATTCACATGTAGGCTATG+TGG 0.611826 8_2:+40697367 Msa1247540:CDS
GTCGATTGATGAACGACCGT+GGG 0.613149 8_2:+40694686 Msa1247540:CDS
TGTTTGATGCACGAAGGGAA+AGG 0.615398 8_2:-40692730 None:intergenic
CATCATTGAGTGAAGCGCAA+AGG 0.618643 8_2:-40692754 None:intergenic
AGTCGATTGATGAACGACCG+TGG 0.622613 8_2:+40694685 Msa1247540:CDS
AAAAGGAGCATGTCTATGCA+AGG 0.623535 8_2:+40697024 Msa1247540:CDS
ATACAAGAGAACCAAGGTCA+TGG 0.626526 8_2:+40693996 Msa1247540:CDS
GATGGGAAATGGCTATGTCA+TGG 0.634166 8_2:-40692529 None:intergenic
TACTGTCCAGAACTGAAGGA+TGG 0.635638 8_2:+40697331 Msa1247540:CDS
CTACCTTGTCCAAGTTGCCG+AGG 0.637462 8_2:+40694049 Msa1247540:CDS
AAAGGATGTTTGATGCACGA+AGG 0.644689 8_2:-40692736 None:intergenic
AGCCCAAACAGATCCTCTGG+AGG 0.662452 8_2:-40692900 None:intergenic
GTTTGGGTACAGTCCTCCAG+AGG 0.675061 8_2:+40692887 Msa1247540:intron
AAGAGATGAATGTTGAGGTG+AGG 0.680395 8_2:-40692707 None:intergenic
CCTGAAGCGTGGGATCCTGG+TGG 0.681002 8_2:-40695950 None:intergenic
ACAGGGGAAGGGGATAACGA+TGG 0.683071 8_2:-40692462 None:intergenic
GATGAATGCAGAAAGCCAAG+AGG 0.685841 8_2:+40696932 Msa1247540:intron
AAATTCTATTGTCAAAACTG+TGG 0.691239 8_2:+40697286 Msa1247540:CDS
GTTTAAGGGCTATAAACGTG+TGG 0.693158 8_2:-40692496 None:intergenic
ACTCTCATACAAGAGAACCA+AGG 0.725787 8_2:+40693990 Msa1247540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATATATATATAAAA+TGG - chr8_2:40692951-40692970 None:intergenic 0.0%
!! TATTATTATTATTATTAAAA+TGG + chr8_2:40693565-40693584 Msa1247540:intron 0.0%
!! ATTATTATTATTATTAAAAT+GGG + chr8_2:40693566-40693585 Msa1247540:intron 0.0%
!!! TATTTTTAATTTCTAATTGT+TGG + chr8_2:40693838-40693857 Msa1247540:intron 10.0%
!!! TTTTTTTAATTGTTTTTACA+TGG + chr8_2:40696228-40696247 Msa1247540:intron 10.0%
!! TTTCTCATTATAAATTATAG+TGG + chr8_2:40693539-40693558 Msa1247540:intron 15.0%
!! TAAAAAAAATAGATACAATG+TGG - chr8_2:40693669-40693688 None:intergenic 15.0%
!! AAATGAAAAAAAGGAAAAAA+GGG - chr8_2:40694610-40694629 None:intergenic 15.0%
!! CATATCAAGATATTTATAAA+TGG - chr8_2:40696315-40696334 None:intergenic 15.0%
!! TTTGATATTACACATATATT+TGG - chr8_2:40696350-40696369 None:intergenic 15.0%
!!! TTTTATTTGAAATAACTTGA+GGG - chr8_2:40697513-40697532 None:intergenic 15.0%
!!! AGTTATTTCAAATAAAAGAA+TGG + chr8_2:40697516-40697535 Msa1247540:CDS 15.0%
!! TTAAAAGTTTGAACAATATG+GGG - chr8_2:40692845-40692864 None:intergenic 20.0%
!! GTTAAAAGTTTGAACAATAT+GGG - chr8_2:40692846-40692865 None:intergenic 20.0%
!! TGTTAAAAGTTTGAACAATA+TGG - chr8_2:40692847-40692866 None:intergenic 20.0%
!!! TTGTTCAAACTTTTAACATA+TGG + chr8_2:40692849-40692868 Msa1247540:intron 20.0%
!!! TTTTTTATAGAGACTAAAAC+CGG - chr8_2:40693128-40693147 None:intergenic 20.0%
!!! TAGAATCTAAGTTTTTTTAC+AGG + chr8_2:40693383-40693402 Msa1247540:intron 20.0%
!!! AGAATCTAAGTTTTTTTACA+GGG + chr8_2:40693384-40693403 Msa1247540:intron 20.0%
!! GTAAAAATAATTTACATCGA+CGG + chr8_2:40693504-40693523 Msa1247540:intron 20.0%
!!! TAAGTAAAGATACAAGATTT+TGG - chr8_2:40693892-40693911 None:intergenic 20.0%
!!! AAAACACAATTTTTTCTACT+TGG + chr8_2:40694181-40694200 Msa1247540:intron 20.0%
!! TCTCAATTAAATTAAGTCTA+TGG - chr8_2:40694379-40694398 None:intergenic 20.0%
!! CAAATGAAAAAAAGGAAAAA+AGG - chr8_2:40694611-40694630 None:intergenic 20.0%
!! TAACATGAAAATATTGTGTT+AGG - chr8_2:40695047-40695066 None:intergenic 20.0%
!!! AACAACATTGATTATGATTA+TGG - chr8_2:40695085-40695104 None:intergenic 20.0%
!!! TAGTTTTAGAAAAATTCTTG+TGG + chr8_2:40695166-40695185 Msa1247540:intron 20.0%
!!! AGAAATTTTATGACATCATA+AGG - chr8_2:40695318-40695337 None:intergenic 20.0%
!!! TCATTGGTTTTTTACTATTT+TGG + chr8_2:40695455-40695474 Msa1247540:intron 20.0%
!! ATAACATGAAAAAGTTAATG+CGG - chr8_2:40695703-40695722 None:intergenic 20.0%
!! AATCAAAAGGAAAGATAAAA+AGG - chr8_2:40695814-40695833 None:intergenic 20.0%
!!! AAATCCTGTTTTTAATCAAA+AGG - chr8_2:40695827-40695846 None:intergenic 20.0%
!! GATATTTATAAATGGAGTAT+CGG - chr8_2:40696307-40696326 None:intergenic 20.0%
!! GATAAACAGAATATCTTTAA+AGG + chr8_2:40696464-40696483 Msa1247540:intron 20.0%
!!! CTATGATTCTAGTTTTAATT+AGG + chr8_2:40696590-40696609 Msa1247540:intron 20.0%
!! ATAGGACATCTTAAAAAAAA+CGG + chr8_2:40696620-40696639 Msa1247540:intron 20.0%
!! ACAGAAAAGAAAAATAATTC+AGG - chr8_2:40696741-40696760 None:intergenic 20.0%
!! TTCTGTTAGCATAAATTATT+TGG + chr8_2:40696755-40696774 Msa1247540:intron 20.0%
!!! AAAGAAATCTTTCATAGTTT+TGG - chr8_2:40696983-40697002 None:intergenic 20.0%
!! TCTCAAAAGTTAAAATAAAC+AGG - chr8_2:40697072-40697091 None:intergenic 20.0%
!!! TGTTTATTTTAACTTTTGAG+AGG + chr8_2:40697071-40697090 Msa1247540:intron 20.0%
!!! CTTTTATTTGAAATAACTTG+AGG - chr8_2:40697514-40697533 None:intergenic 20.0%
!!! GATTTTCAAATTCAGATTAT+TGG - chr8_2:40697699-40697718 None:intergenic 20.0%
!!! TGTGTTTGTTTTTTCAACAA+GGG - chr8_2:40692567-40692586 None:intergenic 25.0%
!! GATAGTTTTTGTAACAGTTT+GGG + chr8_2:40692871-40692890 Msa1247540:intron 25.0%
! TATATATAAAATGGAGACCT+TGG - chr8_2:40692942-40692961 None:intergenic 25.0%
!! TGGAAGAATCTGAAATTATA+GGG + chr8_2:40693359-40693378 Msa1247540:intron 25.0%
! TCCAATAAAATTTGAGAAAC+CGG - chr8_2:40693477-40693496 None:intergenic 25.0%
! TATCTTGACAGAAATACTAT+AGG - chr8_2:40694324-40694343 None:intergenic 25.0%
! GTCAAGATATCTTGAAATTA+AGG + chr8_2:40694335-40694354 Msa1247540:intron 25.0%
! TTATCAACTACTACCAATAT+GGG - chr8_2:40694553-40694572 None:intergenic 25.0%
! TTTATCAACTACTACCAATA+TGG - chr8_2:40694554-40694573 None:intergenic 25.0%
!!! TTCCTTTTTTTCATTTGAAC+AGG + chr8_2:40694614-40694633 Msa1247540:intron 25.0%
!!! TCCTTTTTTTCATTTGAACA+GGG + chr8_2:40694615-40694634 Msa1247540:intron 25.0%
!! ATTATCTTTTCATCTTCTTG+TGG + chr8_2:40694821-40694840 Msa1247540:intron 25.0%
! TTGGTAAAATATAGGAATGA+GGG - chr8_2:40694949-40694968 None:intergenic 25.0%
! ATTGGTAAAATATAGGAATG+AGG - chr8_2:40694950-40694969 None:intergenic 25.0%
! AGGTGATATTGGTAAAATAT+AGG - chr8_2:40694957-40694976 None:intergenic 25.0%
! TTTCATGTTAATATACGAGT+AGG + chr8_2:40695057-40695076 Msa1247540:intron 25.0%
!! ATTAATTTTCTTCTGCAAGA+AGG - chr8_2:40695110-40695129 None:intergenic 25.0%
! TAGTAAGATCTAAACTAAGT+AGG - chr8_2:40695136-40695155 None:intergenic 25.0%
! ACAAAGATTTAACATCATGT+CGG - chr8_2:40695287-40695306 None:intergenic 25.0%
! TACGATAGTCATTAACATAT+TGG + chr8_2:40695339-40695358 Msa1247540:intron 25.0%
! AATACAGAATATTTCGTCAT+TGG + chr8_2:40695439-40695458 Msa1247540:intron 25.0%
!! CATGATAAGAAGCATAATTA+AGG - chr8_2:40695641-40695660 None:intergenic 25.0%
!!! TAACTTTTTCATGTTATGCA+TGG + chr8_2:40695706-40695725 Msa1247540:intron 25.0%
! CTACAATAAATACTTCTGTA+CGG - chr8_2:40695737-40695756 None:intergenic 25.0%
! TATTGTAGTATAGACTATAG+AGG + chr8_2:40695749-40695768 Msa1247540:intron 25.0%
!!! CTTTCCTTTTGATTAAAAAC+AGG + chr8_2:40695820-40695839 Msa1247540:intron 25.0%
!!! TTCATTTGATTTGATCTATG+AGG + chr8_2:40696145-40696164 Msa1247540:intron 25.0%
!!! ATTGTTTTTACATGGAGTTT+AGG + chr8_2:40696236-40696255 Msa1247540:intron 25.0%
!! TTAGGAGTATACATTCAATT+TGG + chr8_2:40696254-40696273 Msa1247540:intron 25.0%
! TATAATGTCATGTCTAACTT+TGG - chr8_2:40696284-40696303 None:intergenic 25.0%
!! TTACACTTTTGTCATCAAAT+TGG + chr8_2:40696382-40696401 Msa1247540:intron 25.0%
!!! ATTCTAGTTTTAATTAGGCA+AGG + chr8_2:40696595-40696614 Msa1247540:intron 25.0%
!!! TTCTAGTTTTAATTAGGCAA+GGG + chr8_2:40696596-40696615 Msa1247540:intron 25.0%
! ATAAGCACACATAAATAACA+TGG + chr8_2:40696792-40696811 Msa1247540:intron 25.0%
!! AAATAAACAGGCTATTTCAA+AGG - chr8_2:40697060-40697079 None:intergenic 25.0%
! AAATTCTATTGTCAAAACTG+TGG + chr8_2:40697286-40697305 Msa1247540:CDS 25.0%
! TGTAAAATATGTCGACAATA+TGG + chr8_2:40697469-40697488 Msa1247540:CDS 25.0%
! ACTAATTAGCATTACTTAAC+AGG - chr8_2:40697759-40697778 None:intergenic 25.0%
!!! GTGTGTTTGTTTTTTCAACA+AGG - chr8_2:40692568-40692587 None:intergenic 30.0%
TTGCTTATTCAAACTCTGTT+GGG - chr8_2:40692597-40692616 None:intergenic 30.0%
!! ATAGAAAAAAGAGAGTACCT+GGG - chr8_2:40692804-40692823 None:intergenic 30.0%
!! AATAGAAAAAAGAGAGTACC+TGG - chr8_2:40692805-40692824 None:intergenic 30.0%
! GGATAGTTTTTGTAACAGTT+TGG + chr8_2:40692870-40692889 Msa1247540:intron 30.0%
GTCACAGATAATGAGTTTAA+TGG + chr8_2:40692998-40693017 Msa1247540:intron 30.0%
CAGATAATGAGTTTAATGGA+CGG + chr8_2:40693002-40693021 Msa1247540:intron 30.0%
AATATTACAGCGAAGAAAAG+AGG - chr8_2:40693097-40693116 None:intergenic 30.0%
! TGGAAGAATCTGAAATTACA+GGG - chr8_2:40693166-40693185 None:intergenic 30.0%
! ATTTCAGATTCTTCCACTTT+TGG + chr8_2:40693170-40693189 Msa1247540:intron 30.0%
ATACATGACACATGAAATGA+GGG + chr8_2:40693224-40693243 Msa1247540:intron 30.0%
! ATTTCAGATTCTTCCACTTT+TGG - chr8_2:40693170-40693189 None:intergenic 30.0%
! GTGGAAGAATCTGAAATTAT+AGG + chr8_2:40693358-40693377 Msa1247540:intron 30.0%
!!! TTTTTTACAGGGACTAAAAC+CGG + chr8_2:40693395-40693414 Msa1247540:intron 30.0%
!! ACCGGTTTCTCAAATTTTAT+TGG + chr8_2:40693473-40693492 Msa1247540:intron 30.0%
! ATTGTTGGTAAGAGTCAAAT+TGG + chr8_2:40693853-40693872 Msa1247540:intron 30.0%
TGTATCTTTACTTACACGTA+TGG + chr8_2:40693898-40693917 Msa1247540:intron 30.0%
! GTTATGATTTGAAGTTGACA+AGG + chr8_2:40693941-40693960 Msa1247540:intron 30.0%
!! AAGGTCCACATTTTTATTTC+AGG + chr8_2:40693960-40693979 Msa1247540:intron 30.0%
GCTTTCCTGAAATAAAAATG+TGG - chr8_2:40693968-40693987 None:intergenic 30.0%
TCTCTGATATATTGTCCATT+CGG - chr8_2:40694028-40694047 None:intergenic 30.0%
! AGTACCTTTCCATTACATTT+TGG - chr8_2:40694130-40694149 None:intergenic 30.0%
!! TTCTACTTGGTCTTATTAGA+AGG + chr8_2:40694194-40694213 Msa1247540:intron 30.0%
!! TCTACTTGGTCTTATTAGAA+GGG + chr8_2:40694195-40694214 Msa1247540:intron 30.0%
! TAACTAACCAAGATTTTCAG+AGG - chr8_2:40694265-40694284 None:intergenic 30.0%
ATATCTGTATATGCATGTAC+TGG + chr8_2:40694294-40694313 Msa1247540:intron 30.0%
CTGAATGTGAAATTTACACT+AGG + chr8_2:40694459-40694478 Msa1247540:intron 30.0%
ATGTGAAATTTACACTAGGA+TGG + chr8_2:40694463-40694482 Msa1247540:intron 30.0%
! TGCTTAGTATTTTCCCATAT+TGG + chr8_2:40694537-40694556 Msa1247540:intron 30.0%
ACCCTGTTCAAATGAAAAAA+AGG - chr8_2:40694619-40694638 None:intergenic 30.0%
! TAAACGTCTGAACATTTTCA+AGG - chr8_2:40694783-40694802 None:intergenic 30.0%
TGGTAAAATATAGGAATGAG+GGG - chr8_2:40694948-40694967 None:intergenic 30.0%
AAGCATAATTAAGGTTAAGC+AGG - chr8_2:40695632-40695651 None:intergenic 30.0%
! TTTGCTAAATAGACCAGTTT+TGG - chr8_2:40695916-40695935 None:intergenic 30.0%
!! GCACGTCAAAAAGTTATTTT+TGG - chr8_2:40696201-40696220 None:intergenic 30.0%
TTACACATATATTTGGACTC+TGG - chr8_2:40696343-40696362 None:intergenic 30.0%
TAGAGCGTATATATTCATGT+TGG - chr8_2:40696491-40696510 None:intergenic 30.0%
CATTAGAGTTTGATTAAGCT+AGG - chr8_2:40696559-40696578 None:intergenic 30.0%
CTAGCTTAATCAAACTCTAA+TGG + chr8_2:40696557-40696576 Msa1247540:intron 30.0%
!! TTTTAATTAGGCAAGGGAAT+AGG + chr8_2:40696602-40696621 Msa1247540:intron 30.0%
AACATGTGTAGAACAGAAAA+AGG - chr8_2:40696654-40696673 None:intergenic 30.0%
ATCCAATAAACCGTGAAAAA+AGG + chr8_2:40697007-40697026 Msa1247540:CDS 30.0%
CTGATTGAAGTGTAAGTAAA+TGG - chr8_2:40697211-40697230 None:intergenic 30.0%
CATTTACTTACACTTCAATC+AGG + chr8_2:40697209-40697228 Msa1247540:intron 30.0%
TTTCATTCCTATTCTAATGC+AGG + chr8_2:40697259-40697278 Msa1247540:intron 30.0%
GAAGAACATGCAATAAGTTA+AGG + chr8_2:40697407-40697426 Msa1247540:CDS 30.0%
CTTGAACCTATATCTTATTG+AGG + chr8_2:40697673-40697692 Msa1247540:three_prime_UTR 30.0%
! TATTGGCCTCAATAAGATAT+AGG - chr8_2:40697682-40697701 None:intergenic 30.0%
!! AAGATGATGATGATGGGAAA+TGG - chr8_2:40692543-40692562 None:intergenic 35.0%
! AAGGGAAAGATGATGATGAT+GGG - chr8_2:40692549-40692568 None:intergenic 35.0%
CTTGCTTATTCAAACTCTGT+TGG - chr8_2:40692598-40692617 None:intergenic 35.0%
TTGGCAAGAATTCATGAACT+TGG - chr8_2:40692636-40692655 None:intergenic 35.0%
AAAGGAAGAGATGAATGTTG+AGG - chr8_2:40692715-40692734 None:intergenic 35.0%
TATTTACCCTAGCGCTTATA+TGG - chr8_2:40693074-40693093 None:intergenic 35.0%
GCTGTAATATTAGCGAATTC+CGG + chr8_2:40693106-40693125 Msa1247540:intron 35.0%
! GTGGAAGAATCTGAAATTAC+AGG - chr8_2:40693167-40693186 None:intergenic 35.0%
CATACATGACACATGAAATG+AGG + chr8_2:40693223-40693242 Msa1247540:intron 35.0%
! ATTTCAGATTCCTCCACTTT+TGG - chr8_2:40693251-40693270 None:intergenic 35.0%
! TGGAGGAATCTGAAATTACA+GGG + chr8_2:40693255-40693274 Msa1247540:intron 35.0%
AAATTACAGGGACCAAAAGT+GGG + chr8_2:40693267-40693286 Msa1247540:intron 35.0%
CCTGTAATATTAGCGAATTC+CGG - chr8_2:40693417-40693436 None:intergenic 35.0%
CGGAATTCGCTAATATTACA+GGG + chr8_2:40693415-40693434 Msa1247540:intron 35.0%
AATATTACAGGGACGAAAAG+AGG + chr8_2:40693426-40693445 Msa1247540:intron 35.0%
AAAATTTGAGAAACCGGTTG+TGG - chr8_2:40693471-40693490 None:intergenic 35.0%
AGATACAATGTGGTAGACAT+TGG - chr8_2:40693659-40693678 None:intergenic 35.0%
TATACTCCTTGTACAGAATG+TGG + chr8_2:40694079-40694098 Msa1247540:CDS 35.0%
TCTATTCCACATTCTGTACA+AGG - chr8_2:40694088-40694107 None:intergenic 35.0%
AATGTGGAATAGAACGATCT+AGG + chr8_2:40694095-40694114 Msa1247540:CDS 35.0%
TCAGACTGTCCAAAATGTAA+TGG + chr8_2:40694118-40694137 Msa1247540:CDS 35.0%
! CTGTCCAAAATGTAATGGAA+AGG + chr8_2:40694123-40694142 Msa1247540:CDS 35.0%
! CAAGATTTTCAGAGGCAATA+TGG - chr8_2:40694257-40694276 None:intergenic 35.0%
! CATATTGCCTCTGAAAATCT+TGG + chr8_2:40694255-40694274 Msa1247540:intron 35.0%
! GGATGGACATTTAGAGTTAA+TGG + chr8_2:40694480-40694499 Msa1247540:intron 35.0%
! CTCTGGAGATTGTGTTATAT+GGG + chr8_2:40694659-40694678 Msa1247540:CDS 35.0%
ATGTGAATGTGGGTGAAAAT+AGG - chr8_2:40695017-40695036 None:intergenic 35.0%
TTTCACCCACATTCACATAT+CGG + chr8_2:40695019-40695038 Msa1247540:intron 35.0%
TGATGCAAAAACACCTGTAT+AGG + chr8_2:40695231-40695250 Msa1247540:intron 35.0%
GATGCAAAAACACCTGTATA+GGG + chr8_2:40695232-40695251 Msa1247540:intron 35.0%
TGACGATGAAGTTGACAAAT+TGG + chr8_2:40695509-40695528 Msa1247540:CDS 35.0%
CTAATCTTCAATCCAACTTC+AGG - chr8_2:40695588-40695607 None:intergenic 35.0%
ACTTGTATTTCGTTTGAGCT+TGG + chr8_2:40696011-40696030 Msa1247540:intron 35.0%
!! GTCATCAAATTGGTAATGCA+CGG + chr8_2:40696392-40696411 Msa1247540:intron 35.0%
TTAAATTTCTTCCCAGTCCT+AGG + chr8_2:40696532-40696551 Msa1247540:intron 35.0%
ATACTTGCATAATGTATCCC+TGG - chr8_2:40696858-40696877 None:intergenic 35.0%
!!! CTCCTTTTTTCACGGTTTAT+TGG - chr8_2:40697012-40697031 None:intergenic 35.0%
!!! TAGACATGCTCCTTTTTTCA+CGG - chr8_2:40697020-40697039 None:intergenic 35.0%
! TTTCTCTTGTTTACTAGTCC+AGG - chr8_2:40697185-40697204 None:intergenic 35.0%
TTTCACACCTGCATTAGAAT+AGG - chr8_2:40697269-40697288 None:intergenic 35.0%
TGAAGGATGGTTTGATTGAT+CGG + chr8_2:40697344-40697363 Msa1247540:CDS 35.0%
TATTGCATGTTCTTCTGTTG+TGG - chr8_2:40697402-40697421 None:intergenic 35.0%
TTAAGGATAAGCCATAGTGA+TGG + chr8_2:40697424-40697443 Msa1247540:CDS 35.0%
TAAGGATAAGCCATAGTGAT+GGG + chr8_2:40697425-40697444 Msa1247540:CDS 35.0%
TTATAACTCTCCCATCACTA+TGG - chr8_2:40697438-40697457 None:intergenic 35.0%
TAATATTGTGTCCCTCTTTC+TGG - chr8_2:40697579-40697598 None:intergenic 35.0%
AGAAAGAGGGACACAATATT+AGG + chr8_2:40697578-40697597 Msa1247540:CDS 35.0%
ACATGTCCTAGTAGAATAGT+TGG + chr8_2:40697601-40697620 Msa1247540:CDS 35.0%
TCAGTACCAACTATTCTACT+AGG - chr8_2:40697610-40697629 None:intergenic 35.0%
! CACTTGAGTTTCTAGAAAGT+GGG - chr8_2:40697653-40697672 None:intergenic 35.0%
TCACAAAAAAGACAGGGGAA+GGG - chr8_2:40692476-40692495 None:intergenic 40.0%
TGTGGTCACAAAAAAGACAG+GGG - chr8_2:40692481-40692500 None:intergenic 40.0%
GTGTGGTCACAAAAAAGACA+GGG - chr8_2:40692482-40692501 None:intergenic 40.0%
GTTTAAGGGCTATAAACGTG+TGG - chr8_2:40692499-40692518 None:intergenic 40.0%
!! ATGGGTGCTTTGAGGTTTAA+GGG - chr8_2:40692513-40692532 None:intergenic 40.0%
ATGGGAAATGGCTATGTCAT+GGG - chr8_2:40692531-40692550 None:intergenic 40.0%
! CAAGGGAAAGATGATGATGA+TGG - chr8_2:40692550-40692569 None:intergenic 40.0%
AGAATTCATGAACTTGGCAG+TGG - chr8_2:40692630-40692649 None:intergenic 40.0%
ATGGAGTGTGAATCACTAGT+TGG - chr8_2:40692655-40692674 None:intergenic 40.0%
GGAAATGTGAGAGAACGAAA+TGG - chr8_2:40692674-40692693 None:intergenic 40.0%
AAGAGATGAATGTTGAGGTG+AGG - chr8_2:40692710-40692729 None:intergenic 40.0%
AAGGATGTTTGATGCACGAA+GGG - chr8_2:40692738-40692757 None:intergenic 40.0%
AAAGGATGTTTGATGCACGA+AGG - chr8_2:40692739-40692758 None:intergenic 40.0%
!!! GGATGATTTTGGGATGGAAA+AGG - chr8_2:40692783-40692802 None:intergenic 40.0%
!! AGAGTACCTGGGATGATTTT+GGG - chr8_2:40692793-40692812 None:intergenic 40.0%
ATCTTGCCATATAAGCGCTA+GGG + chr8_2:40693065-40693084 Msa1247540:intron 40.0%
ATGAAATGAGGGACCAAAAG+TGG + chr8_2:40693235-40693254 Msa1247540:intron 40.0%
! GTGGAGGAATCTGAAATTAC+AGG + chr8_2:40693254-40693273 Msa1247540:intron 40.0%
GAAATTACAGGGACCAAAAG+TGG + chr8_2:40693266-40693285 Msa1247540:intron 40.0%
TGGGAGGAATCTGAACTTAT+AGG + chr8_2:40693286-40693305 Msa1247540:intron 40.0%
GGGAGGAATCTGAACTTATA+GGG + chr8_2:40693287-40693306 Msa1247540:intron 40.0%
TCTGCTGATGTGATGAAATG+AGG + chr8_2:40693327-40693346 Msa1247540:intron 40.0%
CTGCTGATGTGATGAAATGA+GGG + chr8_2:40693328-40693347 Msa1247540:intron 40.0%
ATGAAATGAGGGACCAAAAG+TGG + chr8_2:40693235-40693254 Msa1247540:intron 40.0%
CCGGAATTCGCTAATATTAC+AGG + chr8_2:40693414-40693433 Msa1247540:intron 40.0%
ACTCTCATACAAGAGAACCA+AGG + chr8_2:40693990-40694009 Msa1247540:CDS 40.0%
ATACAAGAGAACCAAGGTCA+TGG + chr8_2:40693996-40694015 Msa1247540:CDS 40.0%
!! GCTCTGGAGATTGTGTTATA+TGG + chr8_2:40694658-40694677 Msa1247540:CDS 40.0%
GACTTACAGAGTACAATGCA+AGG - chr8_2:40694874-40694893 None:intergenic 40.0%
! TAATGATGGTGACATGGGAA+AGG - chr8_2:40694919-40694938 None:intergenic 40.0%
AATATAGGAATGAGGGGTGA+GGG - chr8_2:40694942-40694961 None:intergenic 40.0%
AAATATAGGAATGAGGGGTG+AGG - chr8_2:40694943-40694962 None:intergenic 40.0%
TTCACCCACATTCACATATC+GGG + chr8_2:40695020-40695039 Msa1247540:intron 40.0%
AAACTTGAAGCTCCCTATAC+AGG - chr8_2:40695247-40695266 None:intergenic 40.0%
TAGATCTCCACTCAAAGTGA+AGG + chr8_2:40695485-40695504 Msa1247540:intron 40.0%
TTCAATCCAACTTCAGGAGA+TGG - chr8_2:40695582-40695601 None:intergenic 40.0%
CACATATATTTGGACTCTGG+AGG - chr8_2:40696340-40696359 None:intergenic 40.0%
GTTTGATTAAGCTAGGTCCT+AGG - chr8_2:40696552-40696571 None:intergenic 40.0%
CTACTGTACTACTCGAGTAT+TGG + chr8_2:40696816-40696835 Msa1247540:intron 40.0%
! AAAAGGAGCATGTCTATGCA+AGG + chr8_2:40697024-40697043 Msa1247540:CDS 40.0%
!! ACTTTTGAGAGGTCTTGAAC+AGG + chr8_2:40697082-40697101 Msa1247540:intron 40.0%
ACTTACACTTCAATCAGGCA+TGG + chr8_2:40697214-40697233 Msa1247540:intron 40.0%
ATCAAACCATCCTTCAGTTC+TGG - chr8_2:40697340-40697359 None:intergenic 40.0%
! GCACTTGAGTTTCTAGAAAG+TGG - chr8_2:40697654-40697673 None:intergenic 40.0%
CCAGATGAATGACTCATACT+TGG - chr8_2:40697842-40697861 None:intergenic 40.0%
CCAAGTATGAGTCATTCATC+TGG + chr8_2:40697839-40697858 Msa1247540:three_prime_UTR 40.0%
CACAAAAAAGACAGGGGAAG+GGG - chr8_2:40692475-40692494 None:intergenic 45.0%
GTCACAAAAAAGACAGGGGA+AGG - chr8_2:40692477-40692496 None:intergenic 45.0%
CGTGTGGTCACAAAAAAGAC+AGG - chr8_2:40692483-40692502 None:intergenic 45.0%
!! CATGGGTGCTTTGAGGTTTA+AGG - chr8_2:40692514-40692533 None:intergenic 45.0%
GATGGGAAATGGCTATGTCA+TGG - chr8_2:40692532-40692551 None:intergenic 45.0%
!! AGGTGAGGTGTTTTTGTGCA+TGG - chr8_2:40692695-40692714 None:intergenic 45.0%
TGTTTGATGCACGAAGGGAA+AGG - chr8_2:40692733-40692752 None:intergenic 45.0%
CATCATTGAGTGAAGCGCAA+AGG - chr8_2:40692757-40692776 None:intergenic 45.0%
TTCCATCCCAAAATCATCCC+AGG + chr8_2:40692784-40692803 Msa1247540:CDS 45.0%
!! TACCTGGGATGATTTTGGGA+TGG - chr8_2:40692789-40692808 None:intergenic 45.0%
!!! GAGAGTACCTGGGATGATTT+TGG - chr8_2:40692794-40692813 None:intergenic 45.0%
CGCTTATATGGCAAGATGGT+CGG - chr8_2:40693062-40693081 None:intergenic 45.0%
CTAGCGCTTATATGGCAAGA+TGG - chr8_2:40693066-40693085 None:intergenic 45.0%
CATCTTGCCATATAAGCGCT+AGG + chr8_2:40693064-40693083 Msa1247540:intron 45.0%
AAATGAGGGACCAAAAGTGG+AGG + chr8_2:40693238-40693257 Msa1247540:intron 45.0%
! GTTCAGATTCCTCCCACTTT+TGG - chr8_2:40693282-40693301 None:intergenic 45.0%
AAATGGGGATGTAGCTCAGA+TGG + chr8_2:40693582-40693601 Msa1247540:intron 45.0%
TGTGGTAGACATTGGAGATG+CGG - chr8_2:40693651-40693670 None:intergenic 45.0%
AGAGAACCAAGGTCATGGTT+TGG + chr8_2:40694001-40694020 Msa1247540:CDS 45.0%
! AAGGAGTATAACCCCTTCCT+CGG - chr8_2:40694069-40694088 None:intergenic 45.0%
TAACACAATCTCCAGAGCAC+TGG - chr8_2:40694656-40694675 None:intergenic 45.0%
ATTGATTGAGCTCTCTCCCA+CGG - chr8_2:40694705-40694724 None:intergenic 45.0%
! GAGGGTAATGATGGTGACAT+GGG - chr8_2:40694924-40694943 None:intergenic 45.0%
! TGAGGGTAATGATGGTGACA+TGG - chr8_2:40694925-40694944 None:intergenic 45.0%
TGTTATGCGGGAGGTGATAT+TGG - chr8_2:40694968-40694987 None:intergenic 45.0%
AATATCACCTCCCGCATAAC+AGG + chr8_2:40694967-40694986 Msa1247540:intron 45.0%
ATTTGCCCAAGCCTGTTATG+CGG - chr8_2:40694981-40695000 None:intergenic 45.0%
AGGACCCGATATGTGAATGT+GGG - chr8_2:40695027-40695046 None:intergenic 45.0%
TAGGACCCGATATGTGAATG+TGG - chr8_2:40695028-40695047 None:intergenic 45.0%
TCGTCATCCTTCACTTTGAG+TGG - chr8_2:40695495-40695514 None:intergenic 45.0%
CAGAGTCTCAATGCCAAAAC+TGG + chr8_2:40695900-40695919 Msa1247540:intron 45.0%
ACGAATGAAGATCATCCACC+AGG + chr8_2:40695935-40695954 Msa1247540:CDS 45.0%
TTAAGCTAGGTCCTAGGACT+GGG - chr8_2:40696546-40696565 None:intergenic 45.0%
ATTAAGCTAGGTCCTAGGAC+TGG - chr8_2:40696547-40696566 None:intergenic 45.0%
!! ACTACTCGAGTATTGGCACA+AGG + chr8_2:40696823-40696842 Msa1247540:intron 45.0%
! GCACAAGGCTTTTATTGCCA+GGG + chr8_2:40696838-40696857 Msa1247540:intron 45.0%
GATGAATGCAGAAAGCCAAG+AGG + chr8_2:40696932-40696951 Msa1247540:intron 45.0%
TCTTGCTGAAACAGTCCTCT+TGG - chr8_2:40696950-40696969 None:intergenic 45.0%
CTAGTAGTCCATGAGATGTC+CGG + chr8_2:40697108-40697127 Msa1247540:intron 45.0%
GACCTTGTAACGTCAAGTGA+CGG + chr8_2:40697147-40697166 Msa1247540:intron 45.0%
ACCTTGTAACGTCAAGTGAC+GGG + chr8_2:40697148-40697167 Msa1247540:intron 45.0%
! CTCTTGTTTACTAGTCCAGG+AGG - chr8_2:40697182-40697201 None:intergenic 45.0%
TGTCAAAACTGTGGACGTGA+AGG + chr8_2:40697295-40697314 Msa1247540:CDS 45.0%
ACACTACTGTCCAGAACTGA+AGG + chr8_2:40697327-40697346 Msa1247540:CDS 45.0%
TACTGTCCAGAACTGAAGGA+TGG + chr8_2:40697331-40697350 Msa1247540:CDS 45.0%
TTGATCGGCGATTCACATGT+AGG + chr8_2:40697359-40697378 Msa1247540:CDS 45.0%
CGATTCACATGTAGGCTATG+TGG + chr8_2:40697367-40697386 Msa1247540:CDS 45.0%
TGTAGGCTATGTGGCGAAAA+AGG + chr8_2:40697376-40697395 Msa1247540:CDS 45.0%
GACAATATGGCCATAACCGA+AGG + chr8_2:40697482-40697501 Msa1247540:CDS 45.0%
! TAACTTGAGGGCATGTCCTT+CGG - chr8_2:40697501-40697520 None:intergenic 45.0%
! ATGTCGATTGTGCCAGAAAG+AGG + chr8_2:40697564-40697583 Msa1247540:CDS 45.0%
! TGTCGATTGTGCCAGAAAGA+GGG + chr8_2:40697565-40697584 Msa1247540:CDS 45.0%
!! TTATTATTATTATTAAAATG+GGG + chr8_2:40693567-40693586 Msa1247540:intron 5.0%
GCTATGTCATGGGTGCTTTG+AGG - chr8_2:40692521-40692540 None:intergenic 50.0%
AGTCCTCCAGAGGATCTGTT+TGG + chr8_2:40692897-40692916 Msa1247540:CDS 50.0%
GTCCTCCAGAGGATCTGTTT+GGG + chr8_2:40692898-40692917 Msa1247540:CDS 50.0%
TGGAGGTGGAATTCAAGCCA+AGG + chr8_2:40692922-40692941 Msa1247540:CDS 50.0%
GTGGAACAAGGGACCAAAAG+TGG - chr8_2:40693186-40693205 None:intergenic 50.0%
GTATGCAGATTCTGCTGACG+TGG - chr8_2:40693208-40693227 None:intergenic 50.0%
TTACAGGGACCAAAAGTGGG+AGG + chr8_2:40693270-40693289 Msa1247540:intron 50.0%
TGGTAGACATTGGAGATGCG+GGG - chr8_2:40693649-40693668 None:intergenic 50.0%
GTGGTAGACATTGGAGATGC+GGG - chr8_2:40693650-40693669 None:intergenic 50.0%
TTCGGACCAAACCATGACCT+TGG - chr8_2:40694010-40694029 None:intergenic 50.0%
!! AGGTCATGGTTTGGTCCGAA+TGG + chr8_2:40694010-40694029 Msa1247540:CDS 50.0%
TTGTCCAAGTTGCCGAGGAA+GGG + chr8_2:40694054-40694073 Msa1247540:CDS 50.0%
AGTCGATTGATGAACGACCG+TGG + chr8_2:40694685-40694704 Msa1247540:CDS 50.0%
GTCGATTGATGAACGACCGT+GGG + chr8_2:40694686-40694705 Msa1247540:CDS 50.0%
ATGAGGGGTGAGGGTAATGA+TGG - chr8_2:40694933-40694952 None:intergenic 50.0%
TTTGCCCAAGCCTGTTATGC+GGG - chr8_2:40694980-40694999 None:intergenic 50.0%
ACTGCGAGTGGCTGCTATTA+AGG + chr8_2:40695974-40695993 Msa1247540:CDS 50.0%
! GGCACAAGGCTTTTATTGCC+AGG + chr8_2:40696837-40696856 Msa1247540:intron 50.0%
GTCGAACTCTTACCACTGAC+CGG - chr8_2:40697130-40697149 None:intergenic 50.0%
CCTTGTAACGTCAAGTGACG+GGG + chr8_2:40697149-40697168 Msa1247540:intron 50.0%
ACTGTGGACGTGAAGGACAT+AGG + chr8_2:40697302-40697321 Msa1247540:CDS 50.0%
ACAGGGGAAGGGGATAACGA+TGG - chr8_2:40692465-40692484 None:intergenic 55.0%
GTTTGGGTACAGTCCTCCAG+AGG + chr8_2:40692887-40692906 Msa1247540:intron 55.0%
AGCCCAAACAGATCCTCTGG+AGG - chr8_2:40692903-40692922 None:intergenic 55.0%
TCCAGAGGATCTGTTTGGGC+TGG + chr8_2:40692902-40692921 Msa1247540:CDS 55.0%
TCCAGCCCAAACAGATCCTC+TGG - chr8_2:40692906-40692925 None:intergenic 55.0%
! AGAGGATCTGTTTGGGCTGG+AGG + chr8_2:40692905-40692924 Msa1247540:CDS 55.0%
! CTGCTGACGTGGTGGAACAA+GGG - chr8_2:40693197-40693216 None:intergenic 55.0%
! TCTGCTGACGTGGTGGAACA+AGG - chr8_2:40693198-40693217 None:intergenic 55.0%
TGCAGATTCTGCTGACGTGG+TGG - chr8_2:40693205-40693224 None:intergenic 55.0%
CCGGTTGTGGTTAGCGCTTA+GGG - chr8_2:40693458-40693477 None:intergenic 55.0%
CCCTAAGCGCTAACCACAAC+CGG + chr8_2:40693455-40693474 Msa1247540:intron 55.0%
ACCGGTTGTGGTTAGCGCTT+AGG - chr8_2:40693459-40693478 None:intergenic 55.0%
CGCTTAGCATGCGAGAGGTA+CGG + chr8_2:40693614-40693633 Msa1247540:intron 55.0%
! GCTTAGCATGCGAGAGGTAC+GGG + chr8_2:40693615-40693634 Msa1247540:intron 55.0%
! CTTAGCATGCGAGAGGTACG+GGG + chr8_2:40693616-40693635 Msa1247540:intron 55.0%
CTACCTTGTCCAAGTTGCCG+AGG + chr8_2:40694049-40694068 Msa1247540:CDS 55.0%
CTTCCTCGGCAACTTGGACA+AGG - chr8_2:40694055-40694074 None:intergenic 55.0%
CTTGTCCAAGTTGCCGAGGA+AGG + chr8_2:40694053-40694072 Msa1247540:CDS 55.0%
TGTCCAAGTTGCCGAGGAAG+GGG + chr8_2:40694055-40694074 Msa1247540:CDS 55.0%
TAACCCCTTCCTCGGCAACT+TGG - chr8_2:40694061-40694080 None:intergenic 55.0%
!! CACAATCTCCAGAGCACTGG+TGG - chr8_2:40694653-40694672 None:intergenic 55.0%
GTGACATGGGAAAGGCGAAG+GGG - chr8_2:40694911-40694930 None:intergenic 55.0%
GGTGACATGGGAAAGGCGAA+GGG - chr8_2:40694912-40694931 None:intergenic 55.0%
TGGTGACATGGGAAAGGCGA+AGG - chr8_2:40694913-40694932 None:intergenic 55.0%
ACCTCCCGCATAACAGGCTT+GGG + chr8_2:40694973-40694992 Msa1247540:intron 55.0%
TGGCGACTGGTAAACACGCT+TGG - chr8_2:40695562-40695581 None:intergenic 55.0%
CAACTTCAGGAGATGGCGAC+TGG - chr8_2:40695575-40695594 None:intergenic 55.0%
CAGTCGCCATCTCCTGAAGT+TGG + chr8_2:40695573-40695592 Msa1247540:CDS 55.0%
TCCATGAGATGTCCGGTCAG+TGG + chr8_2:40697115-40697134 Msa1247540:intron 55.0%
ACCACTGACCGGACATCTCA+TGG - chr8_2:40697119-40697138 None:intergenic 55.0%
CCCCGTCACTTGACGTTACA+AGG - chr8_2:40697152-40697171 None:intergenic 55.0%
TGACGGGGTTCAAATCCTCC+TGG + chr8_2:40697164-40697183 Msa1247540:intron 55.0%
! GAGGGCATGTCCTTCGGTTA+TGG - chr8_2:40697495-40697514 None:intergenic 55.0%
! GGATCTGTTTGGGCTGGAGG+TGG + chr8_2:40692908-40692927 Msa1247540:CDS 60.0%
! CTGACTTGCCACCAGTGCTC+TGG + chr8_2:40694642-40694661 Msa1247540:CDS 60.0%
CACCTCCCGCATAACAGGCT+TGG + chr8_2:40694972-40694991 Msa1247540:intron 60.0%
ACTCGCAGTGCCTGAAGCGT+GGG - chr8_2:40695963-40695982 None:intergenic 60.0%
GCGCTCGCTTAGCATGCGAG+AGG + chr8_2:40693609-40693628 Msa1247540:intron 65.0%
GCCCAAGCCTGTTATGCGGG+AGG - chr8_2:40694977-40694996 None:intergenic 65.0%
CCTGAAGCGTGGGATCCTGG+TGG - chr8_2:40695953-40695972 None:intergenic 65.0%
CCACCAGGATCCCACGCTTC+AGG + chr8_2:40695950-40695969 Msa1247540:CDS 65.0%
GTGCCTGAAGCGTGGGATCC+TGG - chr8_2:40695956-40695975 None:intergenic 65.0%
CACTCGCAGTGCCTGAAGCG+TGG - chr8_2:40695964-40695983 None:intergenic 65.0%
! CACGCTTCAGGCACTGCGAG+TGG + chr8_2:40695962-40695981 Msa1247540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 40692437 40697905 40692437 ID=Msa1247540;Name=Msa1247540
chr8_2 mRNA 40692437 40697905 40692437 ID=Msa1247540-mRNA-1;Parent=Msa1247540;Name=Msa1247540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=204|1|1|1|1|1|8|260|388
chr8_2 exon 40692437 40692805 40692437 ID=Msa1247540-mRNA-1:exon:12407;Parent=Msa1247540-mRNA-1
chr8_2 exon 40692888 40692943 40692888 ID=Msa1247540-mRNA-1:exon:12408;Parent=Msa1247540-mRNA-1
chr8_2 exon 40693982 40694144 40693982 ID=Msa1247540-mRNA-1:exon:12409;Parent=Msa1247540-mRNA-1
chr8_2 exon 40694636 40694724 40694636 ID=Msa1247540-mRNA-1:exon:12410;Parent=Msa1247540-mRNA-1
chr8_2 exon 40695488 40695620 40695488 ID=Msa1247540-mRNA-1:exon:12411;Parent=Msa1247540-mRNA-1
chr8_2 exon 40695903 40695995 40695903 ID=Msa1247540-mRNA-1:exon:12412;Parent=Msa1247540-mRNA-1
chr8_2 exon 40696943 40697045 40696943 ID=Msa1247540-mRNA-1:exon:12413;Parent=Msa1247540-mRNA-1
chr8_2 exon 40697281 40697905 40697281 ID=Msa1247540-mRNA-1:exon:12414;Parent=Msa1247540-mRNA-1
chr8_2 five_prime_UTR 40692437 40692640 40692437 ID=Msa1247540-mRNA-1:five_prime_utr;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40692641 40692805 40692641 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40692888 40692943 40692888 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40693982 40694144 40693982 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40694636 40694724 40694636 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40695488 40695620 40695488 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40695903 40695995 40695903 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40696943 40697045 40696943 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 CDS 40697281 40697645 40697281 ID=Msa1247540-mRNA-1:cds;Parent=Msa1247540-mRNA-1
chr8_2 three_prime_UTR 40697646 40697905 40697646 ID=Msa1247540-mRNA-1:three_prime_utr;Parent=Msa1247540-mRNA-1
Gene Sequence

>Msa1247540

ATGAATTCTTGCCAACTAGTGATTCACACTCCATTTCGTTCTCTCACATTTCCATGCACAAAAACACCTCACCTCAACATTCATCTCTTCCTTTCCCTTCGTGCATCAAACATCCTTTGCGCTTCACTCAATGATGATTCCTTTTCCATCCCAAAATCATCCCAGTTTGGGTACAGTCCTCCAGAGGATCTGTTTGGGCTGGAGGTGGAATTCAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCATGGTTTGGTCCGAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAACGATCTAGGTCAGACTGTCCAAAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAGTCGATTGATGAACGACCGTGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGATGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCGAAGAAAAAATCCAAGCGTGTTTACCAGTCGCCATCTCCTGAAGTTGGATTGAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCCACGCTTCAGGCACTGCGAGTGGCTGCTATTAAGAAAGCCAAGAGGACTGTTTCAGCAAGAAATCATGCTTCCAAAACTATGAAAGATTTCTTTAGTGATCCAATAAACCGTGAAAAAAGGAGCATGTCTATGCAAGGTGTGAAATTCTATTGTCAAAACTGTGGACGTGAAGGACATAGGAGACACTACTGTCCAGAACTGAAGGATGGTTTGATTGATCGGCGATTCACATGTAGGCTATGTGGCGAAAAAGGCCACAACAGAAGAACATGCAATAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCGACAATATGGCCATAACCGAAGGACATGCCCTCAAGTTATTTCAAATAAAAGAATGGAAATGACATCTCAGAGAGTATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATATTAGGACATGTCCTAGTAGAATAGTTGGTACTGAACATTCTCTAGAATAA

Protein sequence

>Msa1247540

MNSCQLVIHTPFRSLTFPCTKTPHLNIHLFLSLRASNILCASLNDDSFSIPKSSQFGYSPPEDLFGLEVEFKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKDDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPTLQALRVAAIKKAKRTVSARNHASKTMKDFFSDPINREKRSMSMQGVKFYCQNCGREGHRRHYCPELKDGLIDRRFTCRLCGEKGHNRRTCNKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVISNKRMEMTSQRVYKCRLCQKEGHNIRTCPSRIVGTEHSLE*