AlfalfaGEDB | Msa1239000

M. sativa cultivar zhongmu-4 / Msa1239000

KEGG: K15523
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464
PFAM: PF03881.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239000	XP_013444949.1	96.865	319	10	0	1	319	1	319	0.0	639

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239000	sp\|Q9LEW8\|FN3KR_ARATH	75.926	324	73	3	1	319	3	326	0.0	516

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1239000	0.828474	8.813311e-55	-8.615850e-47
Msa0000220	Msa1239000	0.801627	8.234047e-49	-8.615850e-47
Msa0000610	Msa1239000	0.810691	1.016337e-50	-8.615850e-47
Msa0001040	Msa1239000	0.817991	2.473643e-52	-8.615850e-47
Msa0001420	Msa1239000	0.800965	1.125367e-48	-8.615850e-47
Msa0001540	Msa1239000	0.807434	5.065140e-50	-8.615850e-47
Msa0002690	Msa1239000	0.820977	5.156219e-53	-8.615850e-47
Msa0002700	Msa1239000	0.824656	7.170038e-54	-8.615850e-47
Msa0003340	Msa1239000	0.853557	2.208310e-61	-8.615850e-47
Msa0004180	Msa1239000	0.813685	2.258479e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239000	MtrunA17_Chr8g0350751	96.865	319	10	0	1	319	1	319	0.0	639

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1239000	AT3G61080.1	75.926	324	73	3	1	319	3	326	0.0	516
Msa1239000	AT3G61080.2	70.286	350	73	4	1	319	3	352	1.83e-180	502

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Find 88 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCGTTACAGCAATTT+AGG	0.206719	8_2:-20011252	None:intergenic
AAACTCTATATCAGGAGTAT+TGG	0.488540	8_2:+20008229	Msa1239000:intron
AAAGTTAGTCCAGTTGGTGG+TGG	0.546218	8_2:+20008043	Msa1239000:CDS
AAATCAGGAAAATCTAGTAA+AGG	0.552473	8_2:+20008793	Msa1239000:CDS
AAATGGAGAGCCTGTCATAT+TGG	0.376176	8_2:+20010167	Msa1239000:CDS
AAATGGTCCTGTCACTATAT+TGG	0.394002	8_2:-20009035	None:intergenic
AACAGCCAGGCTTTGAGAAG+AGG	0.543273	8_2:+20010943	Msa1239000:CDS
AAGAAGAAGAGTTGAACACG+TGG	0.690226	8_2:+20007282	Msa1239000:five_prime_UTR
AATAGTGATACAGCAGGTAT+AGG	0.467243	8_2:-20010971	None:intergenic
AATCGCTATGATACTGATGC+TGG	0.547084	8_2:+20008082	Msa1239000:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTTACTTGGTTGTGATT+TGG	-	chr8_2:20007368-20007387	None:intergenic	30.0%
GTGTAATTGTCCTAATGAAA+AGG	+	chr8_2:20007553-20007572	Msa1239000:intron	30.0%
TTGAATGTAACTAGATAGGT+CGG	-	chr8_2:20007679-20007698	None:intergenic	30.0%
GTGATTGAATGTAACTAGAT+AGG	-	chr8_2:20007683-20007702	None:intergenic	30.0%
GTTCTATCAAAGACCATATT+TGG	-	chr8_2:20007798-20007817	None:intergenic	30.0%
TGGTCTTTGATAGAACATTA+TGG	+	chr8_2:20007802-20007821	Msa1239000:intron	30.0%
TCTTTGATAGAACATTATGG+CGG	+	chr8_2:20007805-20007824	Msa1239000:intron	30.0%
CATTCTTTGTCAAAACAAAC+AGG	+	chr8_2:20008107-20008126	Msa1239000:CDS	30.0%
GAATGTTGAAACTCTATATC+AGG	+	chr8_2:20008221-20008240	Msa1239000:intron	30.0%
TGATTGAATGTAACATGTCT+CGG	+	chr8_2:20008437-20008456	Msa1239000:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	20007236	20011276	20007236	ID=Msa1239000;Name=Msa1239000
chr8_2	mRNA	20007236	20011276	20007236	ID=Msa1239000-mRNA-1;Parent=Msa1239000;Name=Msa1239000-mRNA-1;_AED=0.18;_eAED=0.18;_QI=74\|1\|1\|1\|0.87\|0.88\|9\|197\|319
chr8_2	exon	20007236	20007379	20007236	ID=Msa1239000-mRNA-1:exon:7332;Parent=Msa1239000-mRNA-1
chr8_2	exon	20007975	20008128	20007975	ID=Msa1239000-mRNA-1:exon:7333;Parent=Msa1239000-mRNA-1
chr8_2	exon	20008243	20008333	20008243	ID=Msa1239000-mRNA-1:exon:7334;Parent=Msa1239000-mRNA-1
chr8_2	exon	20008618	20008689	20008618	ID=Msa1239000-mRNA-1:exon:7335;Parent=Msa1239000-mRNA-1
chr8_2	exon	20008760	20008848	20008760	ID=Msa1239000-mRNA-1:exon:7336;Parent=Msa1239000-mRNA-1
chr8_2	exon	20008948	20009066	20008948	ID=Msa1239000-mRNA-1:exon:7337;Parent=Msa1239000-mRNA-1
chr8_2	exon	20010064	20010204	20010064	ID=Msa1239000-mRNA-1:exon:7338;Parent=Msa1239000-mRNA-1
chr8_2	exon	20010595	20010671	20010595	ID=Msa1239000-mRNA-1:exon:7339;Parent=Msa1239000-mRNA-1
chr8_2	exon	20010933	20011276	20010933	ID=Msa1239000-mRNA-1:exon:7340;Parent=Msa1239000-mRNA-1
chr8_2	five_prime_UTR	20007236	20007309	20007236	ID=Msa1239000-mRNA-1:five_prime_utr;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20007310	20007379	20007310	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20007975	20008128	20007975	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20008243	20008333	20008243	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20008618	20008689	20008618	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20008760	20008848	20008760	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20008948	20009066	20008948	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20010064	20010204	20010064	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20010595	20010671	20010595	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	CDS	20010933	20011079	20010933	ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2	three_prime_UTR	20011080	20011276	20011080	ID=Msa1239000-mRNA-1:three_prime_utr;Parent=Msa1239000-mRNA-1

Gene Sequence

>Msa1239000

ATGATGTCCACTTCAACATGTTTCTCTTCTCTTCTTCTACCTTCTTTCATCAAAACCAAATCACAACCAATGTGCAGCATGAGTAAGGATCCGGTTCGTGAGTGGATTCTCTCTGAAGGAAAAGCTTCAAAGATAACCAAAGTTAGTCCAGTTGGTGGTGGTTGTATCAATTTTGCGAATCGCTATGATACTGATGCTGGTTCATTCTTTGTCAAAACAAACAGGAGTATTGGTCCATCAATGTTTGAGGCGGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCAGGACCATCCGTGTGCCTAAGCCGTACAAGGTTGGATCGCTACCGTCTGGTGGTTCTTTCATCATTATGGAATTCATAGAATTTGGCGGATCTAGAGATCAGTCTGTTCTAGGAAGGAAGCTTGCGCAAATGCACAAATCAGGAAAATCTAGTAAAGGCTTTGGTTTCGACGTTGAAAACACCATTGGCAGCACACCACAGATAAATACCTGGTCTTCAGACTGGATTCAGTTTTACGGCGAGCACAGATTAGGTTACCAGTTGCAGCTGGCATTCGACCAATATAGTGACAGGACCATTTTGGAAAAAGGGCTGAGACTGGTGGAAAACATCACGCCGCTGTTCGACAATGTGGAGATAGAACCATGCTTGCTACATGGAGATCTCTGGAGTGGTAACATAAGCTCTGACAAAAATGGAGAGCCTGTCATATTGGATCCAGCATGTTACTATGGACACAATGAGGCAGAATTCGGTATGTCTTGGTGTGCTGGCTTTGGAGGCTCATTCTATAACTCTTATTTTGAGGTAATGCCTAAACAGCCAGGCTTTGAGAAGAGGAGAGACCTATACCTGCTGTATCACTATTTAAATCATTACAATCTCTTTGGCTCTGGATACAGATCATCTGCTATGTCTATCATTGATGATTATCTAGCTTATTTAAAAGCTTAG

Protein sequence

>Msa1239000

MMSTSTCFSSLLLPSFIKTKSQPMCSMSKDPVREWILSEGKASKITKVSPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETRTIRVPKPYKVGSLPSGGSFIIMEFIEFGGSRDQSVLGRKLAQMHKSGKSSKGFGFDVENTIGSTPQINTWSSDWIQFYGEHRLGYQLQLAFDQYSDRTILEKGLRLVENITPLFDNVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLAYLKA*