AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239000 MtrunA17_Chr8g0350751 96.865 319 10 0 1 319 1 319 0.0 639
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239000 AT3G61080.1 75.926 324 73 3 1 319 3 326 0.0 516
Msa1239000 AT3G61080.2 70.286 350 73 4 1 319 3 352 1.83e-180 502

Find 88 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGAATTCATAGAATT+TGG 0.175018 8_2:+20008651 Msa1239000:CDS
AAACATCGTTACAGCAATTT+AGG 0.206719 8_2:-20011252 None:intergenic
TGGTGGTTCTTTCATCATTA+TGG 0.241705 8_2:+20008635 Msa1239000:CDS
CTTGCTTCCCAGTCTGTTCT+AGG 0.246454 8_2:+20008748 Msa1239000:intron
ATATAGTGACAGGACCATTT+TGG 0.278148 8_2:+20009038 Msa1239000:CDS
GAGGCGGAGGCTCTTGGTTT+AGG 0.298433 8_2:+20008265 Msa1239000:CDS
TTAAATCATTACAATCTCTT+TGG 0.303968 8_2:+20010993 Msa1239000:CDS
TTCTCAAAGCCTGGCTGTTT+AGG 0.332137 8_2:-20010939 None:intergenic
GGAAAATCTAGTAAAGGCTT+TGG 0.375064 8_2:+20008799 Msa1239000:CDS
AAATGGAGAGCCTGTCATAT+TGG 0.376176 8_2:+20010167 Msa1239000:CDS
TTACTTACTTGGTTGTGATT+TGG 0.377372 8_2:-20007365 None:intergenic
AAATGGTCCTGTCACTATAT+TGG 0.394002 8_2:-20009035 None:intergenic
TTCGGTATGTCTTGGTGTGC+TGG 0.395863 8_2:+20010615 Msa1239000:CDS
ATCTTCAGTACTCTATGAAA+TGG 0.396761 8_2:+20011150 Msa1239000:three_prime_UTR
ATGTCTTGGTGTGCTGGCTT+TGG 0.400111 8_2:+20010621 Msa1239000:CDS
CATTACAATCTCTTTGGCTC+TGG 0.413408 8_2:+20010999 Msa1239000:CDS
TCTTGGTGTGCTGGCTTTGG+AGG 0.425900 8_2:+20010624 Msa1239000:CDS
CTTGCGCAAATGCACAAATC+AGG 0.431172 8_2:+20008778 Msa1239000:CDS
TTGATACAACCACCACCAAC+TGG 0.433145 8_2:-20008052 None:intergenic
GCCTCCGCCTCAAACATTGA+TGG 0.437138 8_2:-20008253 None:intergenic
ACCACCAACTGGACTAACTT+TGG 0.437254 8_2:-20008041 None:intergenic
TCTAGCTTATTTAAAAGCTT+AGG 0.444051 8_2:+20011058 Msa1239000:CDS
GGTCGAATGCCAGCTGCAAC+TGG 0.448517 8_2:-20009014 None:intergenic
TCCATCAATGTTTGAGGCGG+AGG 0.448548 8_2:+20008252 Msa1239000:CDS
ATGTTTGAGGCGGAGGCTCT+TGG 0.450318 8_2:+20008259 Msa1239000:CDS
CATTCTTTGTCAAAACAAAC+AGG 0.455546 8_2:+20008107 Msa1239000:CDS
GGACACAATGAGGCAGAATT+CGG 0.455833 8_2:+20010597 Msa1239000:CDS
ATTAGTGTGCAGCATGAGTA+AGG 0.465533 8_2:+20007970 Msa1239000:intron
TCTCTCCTCTTCTCAAAGCC+TGG 0.466803 8_2:-20010948 None:intergenic
AATAGTGATACAGCAGGTAT+AGG 0.467243 8_2:-20010971 None:intergenic
TAGGTTGGATCGCTACCGTC+TGG 0.477825 8_2:+20008615 Msa1239000:intron
GAGAGAATCCACTCACGAAC+CGG 0.479292 8_2:-20007995 None:intergenic
GCTTGCTACATGGAGATCTC+TGG 0.484204 8_2:+20010121 Msa1239000:CDS
AAACTCTATATCAGGAGTAT+TGG 0.488540 8_2:+20008229 Msa1239000:intron
TTGACAAGCTTAATCAAATG+AGG 0.493953 8_2:+20011094 Msa1239000:three_prime_UTR
CTGAATCCAGTCTGAAGACC+AGG 0.506368 8_2:-20008965 None:intergenic
TAAATACCTGGTCTTCAGAC+TGG 0.506390 8_2:+20008959 Msa1239000:CDS
TTGTTCTACAGGGCTGAGAC+TGG 0.509426 8_2:+20010053 Msa1239000:intron
CTTAGGCACACGGATGGTCC+TGG 0.510384 8_2:-20008302 None:intergenic
ATGGAATTCATAGAATTTGG+CGG 0.510748 8_2:+20008654 Msa1239000:CDS
TAGACCATAGTGTGTGTGAT+TGG 0.517294 8_2:+20007227 None:intergenic
ATTTGGCGGATCTAGAGATC+AGG 0.518102 8_2:+20008668 Msa1239000:CDS
GTGCAGCATGAGTAAGGATC+CGG 0.532558 8_2:+20007976 Msa1239000:CDS
TATTGGTCCATCAATGTTTG+AGG 0.535521 8_2:+20008246 Msa1239000:CDS
AGAAGAGAAACATGTTGAAG+TGG 0.536929 8_2:-20007317 None:intergenic
ACGTTGAAAACACCATTGGC+AGG 0.540479 8_2:+20008827 Msa1239000:CDS
ATTAGGTTACCAGTTGCAGC+TGG 0.542187 8_2:+20009005 Msa1239000:CDS
CCGTGTGCCTAAGCCGTACA+AGG 0.543019 8_2:+20008312 Msa1239000:CDS
AACAGCCAGGCTTTGAGAAG+AGG 0.543273 8_2:+20010943 Msa1239000:CDS
AAAGTTAGTCCAGTTGGTGG+TGG 0.546218 8_2:+20008043 Msa1239000:CDS
AATCGCTATGATACTGATGC+TGG 0.547084 8_2:+20008082 Msa1239000:CDS
CAGGTAATGCCTAAACAGCC+AGG 0.547187 8_2:+20010930 Msa1239000:intron
ATAACCAAAGTTAGTCCAGT+TGG 0.549921 8_2:+20008037 Msa1239000:CDS
AAATCAGGAAAATCTAGTAA+AGG 0.552473 8_2:+20008793 Msa1239000:CDS
CTTCCCAGTCTGTTCTAGGA+AGG 0.552709 8_2:+20008752 Msa1239000:intron
ATAGAACCATGCTTGCTACA+TGG 0.553025 8_2:+20010111 Msa1239000:CDS
AGGCAGAATTCGGTATGTCT+TGG 0.554643 8_2:+20010607 Msa1239000:CDS
CCTTGTACGGCTTAGGCACA+CGG 0.555435 8_2:-20008312 None:intergenic
ACATGTTGAAGTGGACATCA+TGG 0.555741 8_2:-20007308 None:intergenic
TTCGACGTTGAAAACACCAT+TGG 0.558330 8_2:+20008823 Msa1239000:CDS
TTTCTCACCTTGTACGGCTT+AGG 0.559656 8_2:-20008319 None:intergenic
ACCATAGTGTGTGTGATTGG+TGG 0.564665 8_2:+20007230 None:intergenic
CATGCTGGATCCAATATGAC+AGG 0.564809 8_2:-20010177 None:intergenic
TTCTACAGGGCTGAGACTGG+TGG 0.568183 8_2:+20010056 Msa1239000:intron
TTTGACTTACAGTAACATGC+TGG 0.570451 8_2:-20010192 None:intergenic
TACAATAACATACCTGCCAA+TGG 0.575680 8_2:-20008839 None:intergenic
CATTCGACCAATATAGTGAC+AGG 0.579217 8_2:+20009028 Msa1239000:CDS
GTGTTGGTAAAGCCAAAGAA+AGG 0.585139 8_2:+20007256 Msa1239000:five_prime_UTR
AGATCTCCATGTAGCAAGCA+TGG 0.585342 8_2:-20010117 None:intergenic
ACCAAAGTTAGTCCAGTTGG+TGG 0.585827 8_2:+20008040 Msa1239000:CDS
CGTGAGTGGATTCTCTCTGA+AGG 0.586932 8_2:+20008001 Msa1239000:CDS
CACGCCGCTGTTCGACAATG+TGG 0.588014 8_2:+20010086 Msa1239000:CDS
GATTTAAATAGTGATACAGC+AGG 0.595693 8_2:-20010977 None:intergenic
GTAAGGATCCGGTTCGTGAG+TGG 0.599596 8_2:+20007987 Msa1239000:CDS
ACAAATGTATGTCTGTGCAT+TGG 0.615959 8_2:-20011185 None:intergenic
TTCTATAGATGGACACAATG+AGG 0.626106 8_2:+20010587 Msa1239000:intron
TGGTCCATCAATGTTTGAGG+CGG 0.628959 8_2:+20008249 Msa1239000:CDS
GTACGGCTTAGGCACACGGA+TGG 0.632306 8_2:-20008308 None:intergenic
GTTGGATCGCTACCGTCTGG+TGG 0.633372 8_2:+20008618 Msa1239000:CDS
GAAGACCAGGTATTTATCTG+TGG 0.641183 8_2:-20008952 None:intergenic
GTGTGATTGGTGGAAAGTGT+TGG 0.657708 8_2:+20007240 Msa1239000:five_prime_UTR
CTACATGGAGATCTCTGGAG+TGG 0.660267 8_2:+20010126 Msa1239000:CDS
ATCTCCACATTGTCGAACAG+CGG 0.678360 8_2:-20010090 None:intergenic
GCACACCACAGATAAATACC+TGG 0.681671 8_2:+20008947 Msa1239000:intron
TAGGAGCTATGTATGAAACC+AGG 0.686441 8_2:+20008284 Msa1239000:CDS
AAGAAGAAGAGTTGAACACG+TGG 0.690226 8_2:+20007282 Msa1239000:five_prime_UTR
ATGATGAAAGAACCACCAGA+CGG 0.702040 8_2:-20008630 None:intergenic
AGAAGAAGAGTTGAACACGT+GGG 0.738987 8_2:+20007283 Msa1239000:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAGAATATATGTAAAAAAA+AGG - chr8_2:20009508-20009527 None:intergenic 15.0%
!!! CTTTTTTTTACATATATTCT+TGG + chr8_2:20009506-20009525 Msa1239000:intron 15.0%
!! TCAATTAAGTATTATATACA+AGG + chr8_2:20009602-20009621 Msa1239000:intron 15.0%
!! CAATTATATAAGGAAAAATA+TGG + chr8_2:20010543-20010562 Msa1239000:intron 15.0%
!!! AGTTATTATTGTTACTTACT+TGG - chr8_2:20007379-20007398 None:intergenic 20.0%
!! AAATTATGTTACCAAAAGAT+TGG - chr8_2:20007430-20007449 None:intergenic 20.0%
!! ATTTACAGTTTGTGTATAAT+TGG + chr8_2:20007489-20007508 Msa1239000:intron 20.0%
!!! TATACTATATCCTTTTCATT+AGG - chr8_2:20007566-20007585 None:intergenic 20.0%
!! TTAATTAATGCCAATAAGAT+AGG + chr8_2:20007902-20007921 Msa1239000:intron 20.0%
!! ATTATGGAATTCATAGAATT+TGG + chr8_2:20008651-20008670 Msa1239000:CDS 20.0%
!! GTATGTTATTGTAATTGTTA+TGG + chr8_2:20008849-20008868 Msa1239000:intron 20.0%
!! TTTATATTGAATAAACTGAG+CGG + chr8_2:20009154-20009173 Msa1239000:intron 20.0%
!!! ATATACAAGGTTTTAAATAG+CGG + chr8_2:20009615-20009634 Msa1239000:intron 20.0%
!! GAAAAAATATCACAAACAAA+TGG - chr8_2:20009919-20009938 None:intergenic 20.0%
!! AGCAATCATACAATTATATA+AGG + chr8_2:20010533-20010552 Msa1239000:intron 20.0%
!!! ATTCTATAACTCTTATTTTG+AGG + chr8_2:20010650-20010669 Msa1239000:CDS 20.0%
!!! TAATTTTAAATAATCTCTCC+AGG + chr8_2:20010911-20010930 Msa1239000:intron 20.0%
!! TTAAATCATTACAATCTCTT+TGG + chr8_2:20010993-20011012 Msa1239000:CDS 20.0%
! TGAAAAGGATATAGTATAGA+AGG + chr8_2:20007568-20007587 Msa1239000:intron 25.0%
! CTTCATATTGAAAATGTATC+CGG + chr8_2:20007610-20007629 Msa1239000:intron 25.0%
! AATACTGAAACTAGTCATTT+AGG - chr8_2:20007715-20007734 None:intergenic 25.0%
!!! TAAATGACTAGTTTCAGTAT+TGG + chr8_2:20007714-20007733 Msa1239000:intron 25.0%
!! TAAAATTTTCTCACCTTGTA+CGG - chr8_2:20008328-20008347 None:intergenic 25.0%
!!! TACTGTTTTTTCTAGTTTGT+TGG + chr8_2:20008559-20008578 Msa1239000:intron 25.0%
! AATTGAGATAACTTATTGCT+AGG + chr8_2:20008587-20008606 Msa1239000:intron 25.0%
! AAATCAGGAAAATCTAGTAA+AGG + chr8_2:20008793-20008812 Msa1239000:CDS 25.0%
!! AAAGTTACCTTTTTCCAAAA+TGG - chr8_2:20009055-20009074 None:intergenic 25.0%
! AAATGTCATACACTAAAATC+AGG - chr8_2:20009137-20009156 None:intergenic 25.0%
! TTATATTGAATAAACTGAGC+GGG + chr8_2:20009155-20009174 Msa1239000:intron 25.0%
! AGATTACACATTCACTAAAT+CGG + chr8_2:20009318-20009337 Msa1239000:intron 25.0%
!!! TTCACTAAATCGGTTTTAAA+CGG + chr8_2:20009328-20009347 Msa1239000:intron 25.0%
! GAGATTAAGATTCTAAATGA+AGG - chr8_2:20009584-20009603 None:intergenic 25.0%
!!! AAACCATCTATACCTTTTTT+CGG + chr8_2:20009692-20009711 Msa1239000:intron 25.0%
! GTCTGCAATATATATAATCA+AGG - chr8_2:20009855-20009874 None:intergenic 25.0%
!!! GATATTTTTTCATCGCAATT+TGG + chr8_2:20009928-20009947 Msa1239000:intron 25.0%
!! TATAAATCGTAGAGTCTTAT+TGG - chr8_2:20010023-20010042 None:intergenic 25.0%
! TCAAACATAAAACAAAGAGT+TGG + chr8_2:20010318-20010337 Msa1239000:intron 25.0%
!!! ACTTTTGCAATTTTTTCTCA+CGG + chr8_2:20010360-20010379 Msa1239000:intron 25.0%
!! TTTGATATTTTACACACGTT+TGG + chr8_2:20010415-20010434 Msa1239000:intron 25.0%
!! TCTAGCTTATTTAAAAGCTT+AGG + chr8_2:20011058-20011077 Msa1239000:CDS 25.0%
!!! GATTTGGTTTTGATGAAAGA+AGG - chr8_2:20007352-20007371 None:intergenic 30.0%
TTACTTACTTGGTTGTGATT+TGG - chr8_2:20007368-20007387 None:intergenic 30.0%
GTGTAATTGTCCTAATGAAA+AGG + chr8_2:20007553-20007572 Msa1239000:intron 30.0%
TTGAATGTAACTAGATAGGT+CGG - chr8_2:20007679-20007698 None:intergenic 30.0%
GTGATTGAATGTAACTAGAT+AGG - chr8_2:20007683-20007702 None:intergenic 30.0%
!!! TGTCTGTGTTAGTTTTTCAT+TGG + chr8_2:20007761-20007780 Msa1239000:intron 30.0%
! TAGTTTTTCATTGGATGAGT+TGG + chr8_2:20007770-20007789 Msa1239000:intron 30.0%
GTTCTATCAAAGACCATATT+TGG - chr8_2:20007798-20007817 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr8_2:20007802-20007821 Msa1239000:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr8_2:20007805-20007824 Msa1239000:intron 30.0%
CATTCTTTGTCAAAACAAAC+AGG + chr8_2:20008107-20008126 Msa1239000:CDS 30.0%
!!! TTCTGCTGTTTTTCTTTTGA+TGG + chr8_2:20008153-20008172 Msa1239000:intron 30.0%
! TGTTGGTTATTTGGATTTGT+TGG + chr8_2:20008187-20008206 Msa1239000:intron 30.0%
GAATGTTGAAACTCTATATC+AGG + chr8_2:20008221-20008240 Msa1239000:intron 30.0%
! AAACTCTATATCAGGAGTAT+TGG + chr8_2:20008229-20008248 Msa1239000:intron 30.0%
TGATTGAATGTAACATGTCT+CGG + chr8_2:20008437-20008456 Msa1239000:intron 30.0%
TGTCATATACCATTGTATGT+TGG + chr8_2:20008460-20008479 Msa1239000:intron 30.0%
!!! TGTTTTTTCTAGTTTGTTGG+AGG + chr8_2:20008562-20008581 Msa1239000:intron 30.0%
!!! GTTTTTTCTAGTTTGTTGGA+GGG + chr8_2:20008563-20008582 Msa1239000:intron 30.0%
AACTTATTGCTAGGATTTGT+AGG + chr8_2:20008596-20008615 Msa1239000:intron 30.0%
ATGGAATTCATAGAATTTGG+CGG + chr8_2:20008654-20008673 Msa1239000:CDS 30.0%
! GTTCTAATAAGAAGTACAAG+CGG + chr8_2:20008709-20008728 Msa1239000:intron 30.0%
TAGTAGTACTGTCACTATAT+TGG - chr8_2:20009081-20009100 None:intergenic 30.0%
TTTGTGCTCTCAATTTCAAT+TGG - chr8_2:20009181-20009200 None:intergenic 30.0%
ATTACGTCAAGTTTACAATC+CGG + chr8_2:20009220-20009239 Msa1239000:intron 30.0%
! TTTTATTACTACAAGGAACC+CGG - chr8_2:20009242-20009261 None:intergenic 30.0%
! TGTGAGCTTTTATTACTACA+AGG - chr8_2:20009249-20009268 None:intergenic 30.0%
!! TCAATGGTAAAGAGTGTTTA+CGG - chr8_2:20009280-20009299 None:intergenic 30.0%
ACTGTACGATCTTAAATCAA+TGG - chr8_2:20009296-20009315 None:intergenic 30.0%
AAACGGCCATTAATTTAGAT+CGG + chr8_2:20009345-20009364 Msa1239000:intron 30.0%
! TGTTAAGGAATTTGCGATTT+TGG + chr8_2:20009641-20009660 Msa1239000:intron 30.0%
!! TCCATTTTTCTCTGCTTTAA+CGG - chr8_2:20009775-20009794 None:intergenic 30.0%
! AACATAAGCTCTGACAAAAA+TGG + chr8_2:20010150-20010169 Msa1239000:CDS 30.0%
ATTTGTAAGAAGCTGTTCTT+TGG + chr8_2:20010216-20010235 Msa1239000:intron 30.0%
! CATAAAACAAAGAGTTGGTT+TGG + chr8_2:20010323-20010342 Msa1239000:intron 30.0%
CCAATTATAAGCAAAACTAG+AGG - chr8_2:20010489-20010508 None:intergenic 30.0%
!!! CCTCTAGTTTTGCTTATAAT+TGG + chr8_2:20010486-20010505 Msa1239000:intron 30.0%
CAACAATGTGACTATATGTT+TGG + chr8_2:20010764-20010783 Msa1239000:intron 30.0%
GATTTAAATAGTGATACAGC+AGG - chr8_2:20010980-20010999 None:intergenic 30.0%
TTGACAAGCTTAATCAAATG+AGG + chr8_2:20011094-20011113 Msa1239000:three_prime_UTR 30.0%
ATCTTCAGTACTCTATGAAA+TGG + chr8_2:20011150-20011169 Msa1239000:three_prime_UTR 30.0%
AAACATCGTTACAGCAATTT+AGG - chr8_2:20011255-20011274 None:intergenic 30.0%
! CTTCTTCTTTTGCCTTTCTT+TGG - chr8_2:20007271-20007290 None:intergenic 35.0%
AGAAGAGAAACATGTTGAAG+TGG - chr8_2:20007320-20007339 None:intergenic 35.0%
! TTCAGACATCACCAATCTTT+TGG + chr8_2:20007416-20007435 Msa1239000:intron 35.0%
TTCCTCAAAGCCTATCTTAT+TGG - chr8_2:20007915-20007934 None:intergenic 35.0%
ATAACCAAAGTTAGTCCAGT+TGG + chr8_2:20008037-20008056 Msa1239000:CDS 35.0%
! TGAGCTATCTGTTGGTTATT+TGG + chr8_2:20008178-20008197 Msa1239000:intron 35.0%
TATTGGTCCATCAATGTTTG+AGG + chr8_2:20008246-20008265 Msa1239000:CDS 35.0%
TACCATTGTATGTTGGACAT+TGG + chr8_2:20008467-20008486 Msa1239000:intron 35.0%
ACACTATCACTTCAGATTGA+AGG - chr8_2:20008498-20008517 None:intergenic 35.0%
! TCTGAAGTGATAGTGTTACA+TGG + chr8_2:20008502-20008521 Msa1239000:intron 35.0%
TAGTGAGTTGTGAATGAATC+AGG + chr8_2:20008532-20008551 Msa1239000:intron 35.0%
TATTGCTAGGATTTGTAGGT+TGG + chr8_2:20008600-20008619 Msa1239000:intron 35.0%
TGGTGGTTCTTTCATCATTA+TGG + chr8_2:20008635-20008654 Msa1239000:CDS 35.0%
GGAAAATCTAGTAAAGGCTT+TGG + chr8_2:20008799-20008818 Msa1239000:CDS 35.0%
TACAATAACATACCTGCCAA+TGG - chr8_2:20008842-20008861 None:intergenic 35.0%
! TCAGACTGGATTCAGTTTTA+CGG + chr8_2:20008973-20008992 Msa1239000:CDS 35.0%
AAATGGTCCTGTCACTATAT+TGG - chr8_2:20009038-20009057 None:intergenic 35.0%
! ATATAGTGACAGGACCATTT+TGG + chr8_2:20009038-20009057 Msa1239000:CDS 35.0%
AAATCAGCGAATGGAAAGAA+CGG - chr8_2:20009104-20009123 None:intergenic 35.0%
!!! TTCTTTCCATTCGCTGATTT+TGG + chr8_2:20009104-20009123 Msa1239000:intron 35.0%
ATACACTAAAATCAGGTGCA+AGG - chr8_2:20009130-20009149 None:intergenic 35.0%
TTACGTCAAGTTTACAATCC+GGG + chr8_2:20009221-20009240 Msa1239000:intron 35.0%
AACCCTCCGATCTAAATTAA+TGG - chr8_2:20009354-20009373 None:intergenic 35.0%
TATGCAGTAAACATGGGAAA+TGG - chr8_2:20009415-20009434 None:intergenic 35.0%
ATTTCCCATGTTTACTGCAT+AGG + chr8_2:20009414-20009433 Msa1239000:intron 35.0%
TTTCCCATGTTTACTGCATA+GGG + chr8_2:20009415-20009434 Msa1239000:intron 35.0%
TTTCCCTATGCAGTAAACAT+GGG - chr8_2:20009421-20009440 None:intergenic 35.0%
TCAAGAAAATAATAGCCTCC+TGG - chr8_2:20009444-20009463 None:intergenic 35.0%
! AGGAGGCTATTATTTTCTTG+AGG + chr8_2:20009443-20009462 Msa1239000:intron 35.0%
!! TTGATTTGTCTCATAGACAC+TGG - chr8_2:20009548-20009567 None:intergenic 35.0%
TTTAAATAGCGGTCGTGTTA+AGG + chr8_2:20009626-20009645 Msa1239000:intron 35.0%
!!! ATTTGCGATTTTGGCTGTTA+CGG + chr8_2:20009650-20009669 Msa1239000:intron 35.0%
AACGGAGTGAACAAAAAACA+CGG - chr8_2:20009757-20009776 None:intergenic 35.0%
TCCGTTAAAGCAGAGAAAAA+TGG + chr8_2:20009771-20009790 Msa1239000:intron 35.0%
! TTTTGTCACGACTGTTTTCA+CGG + chr8_2:20009809-20009828 Msa1239000:intron 35.0%
!! ATCTGTTTGACTTGTTCTAC+AGG + chr8_2:20010042-20010061 Msa1239000:intron 35.0%
!! TCTGTTTGACTTGTTCTACA+GGG + chr8_2:20010043-20010062 Msa1239000:intron 35.0%
! TTTGACTTACAGTAACATGC+TGG - chr8_2:20010195-20010214 None:intergenic 35.0%
TTCTTTGGCAACCTATGTTT+GGG + chr8_2:20010231-20010250 Msa1239000:intron 35.0%
! GTTCTACATCAGTTTGGTTT+GGG - chr8_2:20010388-20010407 None:intergenic 35.0%
CAAACCAAACTGATGTAGAA+CGG + chr8_2:20010387-20010406 Msa1239000:intron 35.0%
AAACCAAACTGATGTAGAAC+GGG + chr8_2:20010388-20010407 Msa1239000:intron 35.0%
! CGCTTAGAATGTGAAGTATT+AGG + chr8_2:20010451-20010470 Msa1239000:intron 35.0%
! ATGCTGTCTTGTTCTATAGA+TGG + chr8_2:20010576-20010595 Msa1239000:intron 35.0%
TTCTATAGATGGACACAATG+AGG + chr8_2:20010587-20010606 Msa1239000:intron 35.0%
AATAGTGATACAGCAGGTAT+AGG - chr8_2:20010974-20010993 None:intergenic 35.0%
ACAAATGTATGTCTGTGCAT+TGG - chr8_2:20011188-20011207 None:intergenic 35.0%
! GTGTTGGTAAAGCCAAAGAA+AGG + chr8_2:20007256-20007275 Msa1239000:five_prime_UTR 40.0%
AAGAAGAAGAGTTGAACACG+TGG + chr8_2:20007282-20007301 Msa1239000:five_prime_UTR 40.0%
AGAAGAAGAGTTGAACACGT+GGG + chr8_2:20007283-20007302 Msa1239000:five_prime_UTR 40.0%
ACATGTTGAAGTGGACATCA+TGG - chr8_2:20007311-20007330 None:intergenic 40.0%
! TGGTGATGTCTGAAAGAACA+TGG - chr8_2:20007410-20007429 None:intergenic 40.0%
! GGATGAGTTGGATCCAAATA+TGG + chr8_2:20007782-20007801 Msa1239000:intron 40.0%
TGCCAATAAGATAGGCTTTG+AGG + chr8_2:20007910-20007929 Msa1239000:intron 40.0%
ATTAGTGTGCAGCATGAGTA+AGG + chr8_2:20007970-20007989 Msa1239000:intron 40.0%
AATCGCTATGATACTGATGC+TGG + chr8_2:20008082-20008101 Msa1239000:CDS 40.0%
TAGGAGCTATGTATGAAACC+AGG + chr8_2:20008284-20008303 Msa1239000:CDS 40.0%
ATGACACTAACACGTCAACA+CGG + chr8_2:20008392-20008411 Msa1239000:intron 40.0%
GTCCAATGTCCAACATACAA+TGG - chr8_2:20008472-20008491 None:intergenic 40.0%
ATGATGAAAGAACCACCAGA+CGG - chr8_2:20008633-20008652 None:intergenic 40.0%
TTCGACGTTGAAAACACCAT+TGG + chr8_2:20008823-20008842 Msa1239000:CDS 40.0%
GAAGACCAGGTATTTATCTG+TGG - chr8_2:20008955-20008974 None:intergenic 40.0%
! TAAATACCTGGTCTTCAGAC+TGG + chr8_2:20008959-20008978 Msa1239000:CDS 40.0%
CATTCGACCAATATAGTGAC+AGG + chr8_2:20009028-20009047 Msa1239000:CDS 40.0%
!! GACAGGACCATTTTGGAAAA+AGG + chr8_2:20009045-20009064 Msa1239000:CDS 40.0%
GGCCATTAATTTAGATCGGA+GGG + chr8_2:20009349-20009368 Msa1239000:intron 40.0%
TAATTTAGATCGGAGGGTTG+AGG + chr8_2:20009355-20009374 Msa1239000:intron 40.0%
GGTTGAGGTCAGTAATTGTT+TGG + chr8_2:20009370-20009389 Msa1239000:intron 40.0%
!! TTGTTTGGTTCTGTTACTGC+AGG + chr8_2:20009385-20009404 Msa1239000:intron 40.0%
!! TGTTTGGTTCTGTTACTGCA+GGG + chr8_2:20009386-20009405 Msa1239000:intron 40.0%
GTTTCCCTATGCAGTAAACA+TGG - chr8_2:20009422-20009441 None:intergenic 40.0%
!! AGACACTGGTTCTAGGATTA+AGG - chr8_2:20009534-20009553 None:intergenic 40.0%
!!! ATTTTGGCTGTTACGGACTA+TGG + chr8_2:20009657-20009676 Msa1239000:intron 40.0%
! CAGCCGAAAAAAGGTATAGA+TGG - chr8_2:20009698-20009717 None:intergenic 40.0%
! ATAGAACCATGCTTGCTACA+TGG + chr8_2:20010111-20010130 Msa1239000:CDS 40.0%
AAATGGAGAGCCTGTCATAT+TGG + chr8_2:20010167-20010186 Msa1239000:CDS 40.0%
GTTCTTTGGCAACCTATGTT+TGG + chr8_2:20010230-20010249 Msa1239000:intron 40.0%
TTCACTCCTCCTAGATATTC+CGG - chr8_2:20010258-20010277 None:intergenic 40.0%
!! GACTCGGTTTCAAATGGTTT+TGG + chr8_2:20010284-20010303 Msa1239000:intron 40.0%
CGTTCTACATCAGTTTGGTT+TGG - chr8_2:20010389-20010408 None:intergenic 40.0%
! CATTACAATCTCTTTGGCTC+TGG + chr8_2:20010999-20011018 Msa1239000:CDS 40.0%
! GTGTGATTGGTGGAAAGTGT+TGG + chr8_2:20007240-20007259 Msa1239000:five_prime_UTR 45.0%
GTCTGAAAGAACATGGTACG+AGG - chr8_2:20007403-20007422 None:intergenic 45.0%
AACACGTGTCAGACATGTGT+TGG - chr8_2:20007639-20007658 None:intergenic 45.0%
GTAACTAGATAGGTCGGTGT+TGG - chr8_2:20007673-20007692 None:intergenic 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr8_2:20007852-20007871 None:intergenic 45.0%
ACCAAAGTTAGTCCAGTTGG+TGG + chr8_2:20008040-20008059 Msa1239000:CDS 45.0%
ACCACCAACTGGACTAACTT+TGG - chr8_2:20008044-20008063 None:intergenic 45.0%
!! AAAGTTAGTCCAGTTGGTGG+TGG + chr8_2:20008043-20008062 Msa1239000:CDS 45.0%
TTGATACAACCACCACCAAC+TGG - chr8_2:20008055-20008074 None:intergenic 45.0%
! TGATGGTGTGAGCTATCTGT+TGG + chr8_2:20008170-20008189 Msa1239000:intron 45.0%
TGGTCCATCAATGTTTGAGG+CGG + chr8_2:20008249-20008268 Msa1239000:CDS 45.0%
TTTCTCACCTTGTACGGCTT+AGG - chr8_2:20008322-20008341 None:intergenic 45.0%
CACATACACAGACACAGACA+CGG + chr8_2:20008360-20008379 Msa1239000:intron 45.0%
! ATTTGGCGGATCTAGAGATC+AGG + chr8_2:20008668-20008687 Msa1239000:CDS 45.0%
CTTCCTTCCTAGAACAGACT+GGG - chr8_2:20008758-20008777 None:intergenic 45.0%
CTTGCGCAAATGCACAAATC+AGG + chr8_2:20008778-20008797 Msa1239000:CDS 45.0%
ACGTTGAAAACACCATTGGC+AGG + chr8_2:20008827-20008846 Msa1239000:CDS 45.0%
GCACACCACAGATAAATACC+TGG + chr8_2:20008947-20008966 Msa1239000:intron 45.0%
! TTTTACGGCGAGCACAGATT+AGG + chr8_2:20008988-20009007 Msa1239000:CDS 45.0%
ATTAGGTTACCAGTTGCAGC+TGG + chr8_2:20009005-20009024 Msa1239000:CDS 45.0%
CGGCCATTAATTTAGATCGG+AGG + chr8_2:20009348-20009367 Msa1239000:intron 45.0%
GTTTACTGCATAGGGAAACC+AGG + chr8_2:20009423-20009442 Msa1239000:intron 45.0%
!! GTCTCATAGACACTGGTTCT+AGG - chr8_2:20009541-20009560 None:intergenic 45.0%
! ACGACTGTTTTCACGGTAAC+AGG + chr8_2:20009816-20009835 Msa1239000:intron 45.0%
ATCTCCACATTGTCGAACAG+CGG - chr8_2:20010093-20010112 None:intergenic 45.0%
AGATCTCCATGTAGCAAGCA+TGG - chr8_2:20010120-20010139 None:intergenic 45.0%
CATGCTGGATCCAATATGAC+AGG - chr8_2:20010180-20010199 None:intergenic 45.0%
GATATTCCGGTCCCAAACAT+AGG - chr8_2:20010245-20010264 None:intergenic 45.0%
! TGTTTGGGACCGGAATATCT+AGG + chr8_2:20010246-20010265 Msa1239000:intron 45.0%
!! ACGAACGACTCGGTTTCAAA+TGG + chr8_2:20010278-20010297 Msa1239000:intron 45.0%
CAACCCGTTCTACATCAGTT+TGG - chr8_2:20010394-20010413 None:intergenic 45.0%
CAAACTGATGTAGAACGGGT+TGG + chr8_2:20010392-20010411 Msa1239000:intron 45.0%
TGCTCTAGTCTCACACATCT+GGG - chr8_2:20010517-20010536 None:intergenic 45.0%
TTGCTCTAGTCTCACACATC+TGG - chr8_2:20010518-20010537 None:intergenic 45.0%
GGACACAATGAGGCAGAATT+CGG + chr8_2:20010597-20010616 Msa1239000:CDS 45.0%
AGGCAGAATTCGGTATGTCT+TGG + chr8_2:20010607-20010626 Msa1239000:CDS 45.0%
TTCTCAAAGCCTGGCTGTTT+AGG - chr8_2:20010942-20010961 None:intergenic 45.0%
GTCAGACATGTGTTGGACAC+CGG - chr8_2:20007632-20007651 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr8_2:20007847-20007866 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr8_2:20007851-20007870 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr8_2:20007853-20007872 None:intergenic 50.0%
GTGCAGCATGAGTAAGGATC+CGG + chr8_2:20007976-20007995 Msa1239000:CDS 50.0%
GAGAGAATCCACTCACGAAC+CGG - chr8_2:20007998-20008017 None:intergenic 50.0%
! CGTGAGTGGATTCTCTCTGA+AGG + chr8_2:20008001-20008020 Msa1239000:CDS 50.0%
! TCCATCAATGTTTGAGGCGG+AGG + chr8_2:20008252-20008271 Msa1239000:CDS 50.0%
CTTGCTTCCCAGTCTGTTCT+AGG + chr8_2:20008748-20008767 Msa1239000:intron 50.0%
!! CTTCCCAGTCTGTTCTAGGA+AGG + chr8_2:20008752-20008771 Msa1239000:intron 50.0%
GCTTCCTTCCTAGAACAGAC+TGG - chr8_2:20008759-20008778 None:intergenic 50.0%
CTGAATCCAGTCTGAAGACC+AGG - chr8_2:20008968-20008987 None:intergenic 50.0%
GCAAGGCCAAAATCAGCGAA+TGG - chr8_2:20009113-20009132 None:intergenic 50.0%
TACTGCATAGGGAAACCAGG+AGG + chr8_2:20009426-20009445 Msa1239000:intron 50.0%
!!! TTTTTTCGGCTGTTCCCTCG+CGG + chr8_2:20009706-20009725 Msa1239000:intron 50.0%
ATAACACTGTTACGCCGCGA+GGG - chr8_2:20009723-20009742 None:intergenic 50.0%
TTGTTCTACAGGGCTGAGAC+TGG + chr8_2:20010053-20010072 Msa1239000:intron 50.0%
! GCTTGCTACATGGAGATCTC+TGG + chr8_2:20010121-20010140 Msa1239000:CDS 50.0%
! CTACATGGAGATCTCTGGAG+TGG + chr8_2:20010126-20010145 Msa1239000:CDS 50.0%
! TGGCAACCTATGTTTGGGAC+CGG + chr8_2:20010236-20010255 Msa1239000:intron 50.0%
TTGGGACCGGAATATCTAGG+AGG + chr8_2:20010249-20010268 Msa1239000:intron 50.0%
GAGGAGTGAAACGAACGACT+CGG + chr8_2:20010268-20010287 Msa1239000:intron 50.0%
! TTCGGTATGTCTTGGTGTGC+TGG + chr8_2:20010615-20010634 Msa1239000:CDS 50.0%
!! ATGTCTTGGTGTGCTGGCTT+TGG + chr8_2:20010621-20010640 Msa1239000:CDS 50.0%
CTGGCTGTTTAGGCATTACC+TGG - chr8_2:20010932-20010951 None:intergenic 50.0%
CAGGTAATGCCTAAACAGCC+AGG + chr8_2:20010930-20010949 Msa1239000:intron 50.0%
!! AACAGCCAGGCTTTGAGAAG+AGG + chr8_2:20010943-20010962 Msa1239000:CDS 50.0%
TCTCTCCTCTTCTCAAAGCC+TGG - chr8_2:20010951-20010970 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr8_2:20007839-20007858 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr8_2:20007838-20007857 Msa1239000:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr8_2:20007839-20007858 Msa1239000:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr8_2:20007845-20007864 Msa1239000:intron 55.0%
! GTAAGGATCCGGTTCGTGAG+TGG + chr8_2:20007987-20008006 Msa1239000:CDS 55.0%
GCCTCCGCCTCAAACATTGA+TGG - chr8_2:20008256-20008275 None:intergenic 55.0%
! ATGTTTGAGGCGGAGGCTCT+TGG + chr8_2:20008259-20008278 Msa1239000:CDS 55.0%
CCTTGTACGGCTTAGGCACA+CGG - chr8_2:20008315-20008334 None:intergenic 55.0%
ACAGACACAGACACGGAAGC+TGG + chr8_2:20008367-20008386 Msa1239000:intron 55.0%
! TAGGTTGGATCGCTACCGTC+TGG + chr8_2:20008615-20008634 Msa1239000:intron 55.0%
GCGAGGGAACAGCCGAAAAA+AGG - chr8_2:20009707-20009726 None:intergenic 55.0%
GATAACACTGTTACGCCGCG+AGG - chr8_2:20009724-20009743 None:intergenic 55.0%
GCGGCGTAACAGTGTTATCG+TGG + chr8_2:20009725-20009744 Msa1239000:intron 55.0%
TTCTACAGGGCTGAGACTGG+TGG + chr8_2:20010056-20010075 Msa1239000:intron 55.0%
!! TCTTGGTGTGCTGGCTTTGG+AGG + chr8_2:20010624-20010643 Msa1239000:CDS 55.0%
GAGGCGGAGGCTCTTGGTTT+AGG + chr8_2:20008265-20008284 Msa1239000:CDS 60.0%
CTTAGGCACACGGATGGTCC+TGG - chr8_2:20008305-20008324 None:intergenic 60.0%
GTACGGCTTAGGCACACGGA+TGG - chr8_2:20008311-20008330 None:intergenic 60.0%
CCGTGTGCCTAAGCCGTACA+AGG + chr8_2:20008312-20008331 Msa1239000:CDS 60.0%
GTTGGATCGCTACCGTCTGG+TGG + chr8_2:20008618-20008637 Msa1239000:CDS 60.0%
GGTCGAATGCCAGCTGCAAC+TGG - chr8_2:20009017-20009036 None:intergenic 60.0%
CACGCCGCTGTTCGACAATG+TGG + chr8_2:20010086-20010105 Msa1239000:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 20007236 20011276 20007236 ID=Msa1239000;Name=Msa1239000
chr8_2 mRNA 20007236 20011276 20007236 ID=Msa1239000-mRNA-1;Parent=Msa1239000;Name=Msa1239000-mRNA-1;_AED=0.18;_eAED=0.18;_QI=74|1|1|1|0.87|0.88|9|197|319
chr8_2 exon 20007236 20007379 20007236 ID=Msa1239000-mRNA-1:exon:7332;Parent=Msa1239000-mRNA-1
chr8_2 exon 20007975 20008128 20007975 ID=Msa1239000-mRNA-1:exon:7333;Parent=Msa1239000-mRNA-1
chr8_2 exon 20008243 20008333 20008243 ID=Msa1239000-mRNA-1:exon:7334;Parent=Msa1239000-mRNA-1
chr8_2 exon 20008618 20008689 20008618 ID=Msa1239000-mRNA-1:exon:7335;Parent=Msa1239000-mRNA-1
chr8_2 exon 20008760 20008848 20008760 ID=Msa1239000-mRNA-1:exon:7336;Parent=Msa1239000-mRNA-1
chr8_2 exon 20008948 20009066 20008948 ID=Msa1239000-mRNA-1:exon:7337;Parent=Msa1239000-mRNA-1
chr8_2 exon 20010064 20010204 20010064 ID=Msa1239000-mRNA-1:exon:7338;Parent=Msa1239000-mRNA-1
chr8_2 exon 20010595 20010671 20010595 ID=Msa1239000-mRNA-1:exon:7339;Parent=Msa1239000-mRNA-1
chr8_2 exon 20010933 20011276 20010933 ID=Msa1239000-mRNA-1:exon:7340;Parent=Msa1239000-mRNA-1
chr8_2 five_prime_UTR 20007236 20007309 20007236 ID=Msa1239000-mRNA-1:five_prime_utr;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20007310 20007379 20007310 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20007975 20008128 20007975 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20008243 20008333 20008243 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20008618 20008689 20008618 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20008760 20008848 20008760 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20008948 20009066 20008948 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20010064 20010204 20010064 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20010595 20010671 20010595 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 CDS 20010933 20011079 20010933 ID=Msa1239000-mRNA-1:cds;Parent=Msa1239000-mRNA-1
chr8_2 three_prime_UTR 20011080 20011276 20011080 ID=Msa1239000-mRNA-1:three_prime_utr;Parent=Msa1239000-mRNA-1
Gene Sequence

>Msa1239000

ATGATGTCCACTTCAACATGTTTCTCTTCTCTTCTTCTACCTTCTTTCATCAAAACCAAATCACAACCAATGTGCAGCATGAGTAAGGATCCGGTTCGTGAGTGGATTCTCTCTGAAGGAAAAGCTTCAAAGATAACCAAAGTTAGTCCAGTTGGTGGTGGTTGTATCAATTTTGCGAATCGCTATGATACTGATGCTGGTTCATTCTTTGTCAAAACAAACAGGAGTATTGGTCCATCAATGTTTGAGGCGGAGGCTCTTGGTTTAGGAGCTATGTATGAAACCAGGACCATCCGTGTGCCTAAGCCGTACAAGGTTGGATCGCTACCGTCTGGTGGTTCTTTCATCATTATGGAATTCATAGAATTTGGCGGATCTAGAGATCAGTCTGTTCTAGGAAGGAAGCTTGCGCAAATGCACAAATCAGGAAAATCTAGTAAAGGCTTTGGTTTCGACGTTGAAAACACCATTGGCAGCACACCACAGATAAATACCTGGTCTTCAGACTGGATTCAGTTTTACGGCGAGCACAGATTAGGTTACCAGTTGCAGCTGGCATTCGACCAATATAGTGACAGGACCATTTTGGAAAAAGGGCTGAGACTGGTGGAAAACATCACGCCGCTGTTCGACAATGTGGAGATAGAACCATGCTTGCTACATGGAGATCTCTGGAGTGGTAACATAAGCTCTGACAAAAATGGAGAGCCTGTCATATTGGATCCAGCATGTTACTATGGACACAATGAGGCAGAATTCGGTATGTCTTGGTGTGCTGGCTTTGGAGGCTCATTCTATAACTCTTATTTTGAGGTAATGCCTAAACAGCCAGGCTTTGAGAAGAGGAGAGACCTATACCTGCTGTATCACTATTTAAATCATTACAATCTCTTTGGCTCTGGATACAGATCATCTGCTATGTCTATCATTGATGATTATCTAGCTTATTTAAAAGCTTAG

Protein sequence

>Msa1239000

MMSTSTCFSSLLLPSFIKTKSQPMCSMSKDPVREWILSEGKASKITKVSPVGGGCINFANRYDTDAGSFFVKTNRSIGPSMFEAEALGLGAMYETRTIRVPKPYKVGSLPSGGSFIIMEFIEFGGSRDQSVLGRKLAQMHKSGKSSKGFGFDVENTIGSTPQINTWSSDWIQFYGEHRLGYQLQLAFDQYSDRTILEKGLRLVENITPLFDNVEIEPCLLHGDLWSGNISSDKNGEPVILDPACYYGHNEAEFGMSWCAGFGGSFYNSYFEVMPKQPGFEKRRDLYLLYHYLNHYNLFGSGYRSSAMSIIDDYLAYLKA*