AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370690 MtrunA17_Chr3g0116461 98.452 323 5 0 8 330 1 323 0.0 655
Msa0370690 MtrunA17_Chr8g0381911 39.209 278 147 7 47 304 21 296 1.62e-54 181
Msa0370690 MtrunA17_Chr2g0291931 34.868 152 90 5 89 234 74 222 1.79e-20 90.9
Msa0370690 MtrunA17_Chr7g0271811 30.542 203 125 6 88 289 74 261 6.37e-13 69.7
Msa0370690 MtrunA17_Chr4g0048231 32.609 138 92 1 189 326 93 229 1.71e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370690 AT3G48420.1 81.588 277 47 2 57 330 44 319 5.78e-160 450
Msa0370690 AT4G39970.1 38.431 255 140 6 65 304 42 294 1.16e-50 171
Msa0370690 AT5G45170.1 29.289 239 148 9 17 240 1 233 6.94e-18 84.0
Msa0370690 AT5G45170.2 29.289 239 148 9 17 240 1 233 7.11e-18 83.6
Msa0370690 AT1G56500.2 29.675 246 129 8 62 289 43 262 3.13e-13 71.2
Msa0370690 AT1G56500.1 32.843 204 119 7 88 289 75 262 3.39e-13 70.9
Msa0370690 AT4G21470.1 29.661 236 140 9 86 317 10 223 9.00e-12 65.9

Find 78 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGGTGAATTGCTCAAAAT+TGG 0.190541 3_1:+68577745 Msa0370690:CDS
CCACGTCTCCTGCAAATATC+TGG 0.290444 3_1:-68578737 None:intergenic
GATCCTTCTTGTTGTGCTTA+AGG 0.294915 3_1:-68577036 None:intergenic
TGCAATAGTATCATGTTTAC+TGG 0.316202 3_1:+68578692 Msa0370690:CDS
TAAAAGATCAATGTTTATAT+CGG 0.325530 3_1:+68579765 Msa0370690:three_prime_UTR
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3_1:+68579603 Msa0370690:CDS
GCAACTCAACCTACGCCTTC+TGG 0.346804 3_1:-68577125 None:intergenic
TTGAAATGTGTGTGATGATT+TGG 0.365083 3_1:+68576896 Msa0370690:five_prime_UTR
TCAATTCCTCATTTGTTGTC+AGG 0.365784 3_1:+68579720 Msa0370690:three_prime_UTR
AACATACAGGCTTGTCGATC+AGG 0.380787 3_1:+68578432 Msa0370690:intron
CAACAATGAAGCAGAGGAAA+TGG 0.387924 3_1:-68576972 None:intergenic
TTAACATCAAGTCTTTAGAT+TGG 0.398693 3_1:+68579915 Msa0370690:three_prime_UTR
GCGAAAATCCAGATATTTGC+AGG 0.398864 3_1:+68578729 Msa0370690:CDS
GCGAAAGACAGAACTATTCA+TGG 0.402161 3_1:+68577952 Msa0370690:CDS
GATGCTGTATTTGACTTCAT+TGG 0.403312 3_1:+68579574 Msa0370690:CDS
TATACATACCGCCTTCTCAT+TGG 0.409078 3_1:-68578494 None:intergenic
CAATATGTCAGCTAGCAAAC+TGG 0.412540 3_1:+68579652 Msa0370690:exon
TAACATCAAGTCTTTAGATT+GGG 0.416264 3_1:+68579916 Msa0370690:three_prime_UTR
GATGAAAATCTTACTGGATC+AGG 0.425148 3_1:-68578774 None:intergenic
AGAAAGAACTAGGCGTTACC+TGG 0.431412 3_1:+68577710 Msa0370690:intron
CTAGCAGCAGCTAAAGCAGC+TGG 0.444999 3_1:+68579330 Msa0370690:CDS
TACTACTTATCTGCTTCCTA+TGG 0.453962 3_1:-68576872 None:intergenic
GTGGTCGAGGACAGTGCAAT+AGG 0.458037 3_1:+68579306 Msa0370690:CDS
GAGTTGCTCAGCCTCGGCTT+CGG 0.462076 3_1:+68577141 Msa0370690:CDS
AAGAGCTTTGACAGTGAAAG+AGG 0.462364 3_1:-68577083 None:intergenic
TGAGTTGTGCAGAAAGAACT+AGG 0.472615 3_1:+68577700 Msa0370690:intron
TTTATATCGGTTGTGTAAAG+AGG 0.474407 3_1:+68579778 Msa0370690:three_prime_UTR
TAGGTTGAGTTGCTCAGCCT+CGG 0.485144 3_1:+68577135 Msa0370690:CDS
GCTTGCAGCTAGTATATAGA+TGG 0.488092 3_1:-68578959 None:intergenic
CTCTCGGTGTTGAACCTTCG+AGG 0.492187 3_1:+68578983 Msa0370690:CDS
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3_1:-68579604 None:intergenic
ACCTGGGACGTGGAATTGTA+CGG 0.498073 3_1:+68577727 Msa0370690:CDS
TCACCGGTCGGTGCATTCGC+AGG 0.502591 3_1:-68577893 None:intergenic
GTAACCAACTTTGCAACACC+TGG 0.507072 3_1:-68578007 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3_1:+68579293 Msa0370690:intron
CCTTCTTGTTGTGCTTAAGG+AGG 0.524553 3_1:-68577033 None:intergenic
GTCGATCAGGCTTTAACTCA+AGG 0.530696 3_1:+68578445 Msa0370690:CDS
ACCGTACAATTCCACGTCCC+AGG 0.534371 3_1:-68577728 None:intergenic
TGACATATTGCTTCTCAAGA+AGG 0.536995 3_1:-68579639 None:intergenic
TTTCTTTCTTGTTCACCGGT+CGG 0.536996 3_1:-68577905 None:intergenic
ATACTAGCTGCAAGCACTCT+CGG 0.540283 3_1:+68578967 Msa0370690:CDS
TTATCTGCTTCCTATGGAGT+GGG 0.543330 3_1:-68576866 None:intergenic
AAACTGTTGCCTCTTCGCCC+AGG 0.546839 3_1:+68577989 Msa0370690:CDS
AAAGACTTGATGTTAAAACT+TGG 0.553281 3_1:-68579908 None:intergenic
TTGCAGCACTTCCAATGAGA+AGG 0.567771 3_1:+68578483 Msa0370690:CDS
GGTGAATTGCTCAAAATTGG+AGG 0.570888 3_1:+68577748 Msa0370690:CDS
GAATTGCTCAAAATTGGAGG+TGG 0.571113 3_1:+68577751 Msa0370690:CDS
TGGCCTGCGAATGCACCGAC+CGG 0.571608 3_1:+68577890 Msa0370690:CDS
ACAGCGTACTTTAACAAGAC+AGG 0.572132 3_1:+68577866 Msa0370690:CDS
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3_1:+68579358 Msa0370690:CDS
AATTAACGGTCCCACTCCAT+AGG 0.581075 3_1:+68576856 None:intergenic
CCAGATATTTGCAGGAGACG+TGG 0.583159 3_1:+68578737 Msa0370690:CDS
CTTATCTGCTTCCTATGGAG+TGG 0.585333 3_1:-68576867 None:intergenic
CCTCCTTAAGCACAACAAGA+AGG 0.586129 3_1:+68577033 Msa0370690:CDS
TAGCAGCAGCTAAAGCAGCT+GGG 0.588153 3_1:+68579331 Msa0370690:CDS
AGCATGAGGCACCTCTTGGA+AGG 0.594170 3_1:-68577257 None:intergenic
GCAATAGTATCATGTTTACT+GGG 0.601679 3_1:+68578693 Msa0370690:CDS
TTTGCAACACCTGGGCGAAG+AGG 0.605369 3_1:-68577998 None:intergenic
CGTAGAAGATGCCGAAGCCG+AGG 0.606005 3_1:-68577152 None:intergenic
GATGCTATTTGTTGATGCCA+TGG 0.609340 3_1:-68576945 None:intergenic
TGTTATTTACAGATGTGTCG+TGG 0.617481 3_1:+68579287 Msa0370690:intron
CGTACTTTAACAAGACAGGC+TGG 0.620399 3_1:+68577870 Msa0370690:CDS
ACTAGGCGTTACCTGGGACG+TGG 0.621198 3_1:+68577717 Msa0370690:CDS
GTGTGATGATTTGGTATGCA+AGG 0.622264 3_1:+68576905 Msa0370690:exon
AAATTGGAGGTGGAAAAGAA+AGG 0.623022 3_1:+68577761 Msa0370690:CDS
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3_1:+68579588 Msa0370690:CDS
TCGATTCAACAATGAAGCAG+AGG 0.624993 3_1:-68576978 None:intergenic
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3_1:-68579601 None:intergenic
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3_1:+68579357 Msa0370690:CDS
GGTAAGCCTGACAACAAATG+AGG 0.628590 3_1:-68579726 None:intergenic
CTTCAACAGCCAGAAGGCGT+AGG 0.634274 3_1:+68577116 Msa0370690:CDS
TTTCAATGATACCTTCCAAG+AGG 0.634885 3_1:+68577246 Msa0370690:CDS
GAAAGAACTAGGCGTTACCT+GGG 0.638091 3_1:+68577711 Msa0370690:intron
TATCAACTTCAACAGCCAGA+AGG 0.643554 3_1:+68577110 Msa0370690:CDS
TAACCAACTTTGCAACACCT+GGG 0.652911 3_1:-68578006 None:intergenic
CAGCACTTCCAATGAGAAGG+CGG 0.658354 3_1:+68578486 Msa0370690:CDS
AGGTATCATTGAAAGAAATG+CGG 0.709896 3_1:-68577237 None:intergenic
ACTATTATGAGATACCTCGA+AGG 0.710353 3_1:-68578997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAAAATGTTTTTTTTTTT+TGG - chr3_1:68577523-68577542 None:intergenic 10.0%
!! ATGTAAATAAATTCATTTAT+TGG + chr3_1:68578085-68578104 Msa0370690:intron 10.0%
!! TGTAAATAAATTCATTTATT+GGG + chr3_1:68578086-68578105 Msa0370690:intron 10.0%
!! AACATTATAAATAATGAGTA+TGG - chr3_1:68578054-68578073 None:intergenic 15.0%
!!! TTTTGAATGTTAACTTAAAT+TGG - chr3_1:68578194-68578213 None:intergenic 15.0%
!!! AAATAATATTAGCCTATTAA+GGG - chr3_1:68578278-68578297 None:intergenic 15.0%
!!! TAAATAATATTAGCCTATTA+AGG - chr3_1:68578279-68578298 None:intergenic 15.0%
!! ATTCAATCATATAGTAAAAA+AGG - chr3_1:68578886-68578905 None:intergenic 15.0%
!!! GTATATTTCTATTTACTAAA+TGG + chr3_1:68579380-68579399 Msa0370690:intron 15.0%
!!! TCTATGTAATTTTTTTTCAT+AGG + chr3_1:68579411-68579430 Msa0370690:intron 15.0%
!!! TTTTAATCATTGACTTAAAA+GGG - chr3_1:68579750-68579769 None:intergenic 15.0%
!! TAAAAGATCAATGTTTATAT+CGG + chr3_1:68579765-68579784 Msa0370690:three_prime_UTR 15.0%
!!! TTTTTATTTATAAGAGATTG+AGG - chr3_1:68579880-68579899 None:intergenic 15.0%
!! AAGATACACATAATAAGATA+AGG - chr3_1:68578405-68578424 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG - chr3_1:68578536-68578555 None:intergenic 20.0%
!!! AGGAATTGATTCTATAAAAT+GGG - chr3_1:68578572-68578591 None:intergenic 20.0%
!!! TAGGAATTGATTCTATAAAA+TGG - chr3_1:68578573-68578592 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG + chr3_1:68578611-68578630 Msa0370690:intron 20.0%
!!! TGCTAATTTTTTAGATTTTC+AGG + chr3_1:68578804-68578823 Msa0370690:intron 20.0%
!!! TACAACATTTGATTTTATGA+TGG - chr3_1:68579137-68579156 None:intergenic 20.0%
!!! AATAACTTGCTCTAAAATTT+TGG - chr3_1:68579205-68579224 None:intergenic 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG + chr3_1:68579237-68579256 Msa0370690:intron 20.0%
!!! CTTTTAATCATTGACTTAAA+AGG - chr3_1:68579751-68579770 None:intergenic 20.0%
!!! TGACATTTTTAATCATCAAA+GGG - chr3_1:68579854-68579873 None:intergenic 20.0%
!!! CTTATAAGTGTTGTTGTTTT+TGG - chr3_1:68577013-68577032 None:intergenic 25.0%
!! AACAAAGATTAAAAAGCATG+AGG - chr3_1:68577274-68577293 None:intergenic 25.0%
!!! AACTAGTTTGTTGTTTTCAT+CGG - chr3_1:68577464-68577483 None:intergenic 25.0%
! ATCCTATAACATCTTTATAC+TGG + chr3_1:68577567-68577586 Msa0370690:intron 25.0%
! ACAATTGATGTGTTTATTGT+AGG + chr3_1:68577840-68577859 Msa0370690:intron 25.0%
! TATCTTTCTTTCAAACATAC+AGG + chr3_1:68578419-68578438 Msa0370690:intron 25.0%
!! AAATGAATTTTTCCAACTAC+AGG + chr3_1:68578537-68578556 Msa0370690:intron 25.0%
!! AATGAATTTTTCCAACTACA+GGG + chr3_1:68578538-68578557 Msa0370690:intron 25.0%
! ATTTATTTGTATTCCATCTC+AGG + chr3_1:68578640-68578659 Msa0370690:intron 25.0%
! TATACACTACAGTTAAACAA+TGG + chr3_1:68578858-68578877 Msa0370690:intron 25.0%
! ATATGATTGAATGTTCAGTA+TGG + chr3_1:68578894-68578913 Msa0370690:intron 25.0%
! CTTTAAATTACACAAGACAT+TGG + chr3_1:68579072-68579091 Msa0370690:intron 25.0%
!!! GATTTTATGATGGATACATT+TGG - chr3_1:68579127-68579146 None:intergenic 25.0%
!!! TTAGTGGTTATGTTAGTTTT+TGG + chr3_1:68579450-68579469 Msa0370690:intron 25.0%
!!! TAGTGGTTATGTTAGTTTTT+GGG + chr3_1:68579451-68579470 Msa0370690:intron 25.0%
!! CTGACATTTTTAATCATCAA+AGG - chr3_1:68579855-68579874 None:intergenic 25.0%
! AAAGACTTGATGTTAAAACT+TGG - chr3_1:68579911-68579930 None:intergenic 25.0%
! TTAACATCAAGTCTTTAGAT+TGG + chr3_1:68579915-68579934 Msa0370690:three_prime_UTR 25.0%
! TAACATCAAGTCTTTAGATT+GGG + chr3_1:68579916-68579935 Msa0370690:three_prime_UTR 25.0%
TTGAAATGTGTGTGATGATT+TGG + chr3_1:68576896-68576915 Msa0370690:five_prime_UTR 30.0%
!!! CATCTTTTTCAGTATCTACA+AGG - chr3_1:68577213-68577232 None:intergenic 30.0%
CTTGTAGATACTGAAAAAGA+TGG + chr3_1:68577211-68577230 Msa0370690:CDS 30.0%
AGGTATCATTGAAAGAAATG+CGG - chr3_1:68577240-68577259 None:intergenic 30.0%
! AGAATCGTTGATTACATTGA+GGG + chr3_1:68577419-68577438 Msa0370690:intron 30.0%
AGCCAGTATAAAGATGTTAT+AGG - chr3_1:68577572-68577591 None:intergenic 30.0%
AACACTAATAATCGTTTCCA+AGG - chr3_1:68577612-68577631 None:intergenic 30.0%
TGGAAACGATTATTAGTGTT+TGG + chr3_1:68577612-68577631 Msa0370690:intron 30.0%
AAACGATTATTAGTGTTTGG+TGG + chr3_1:68577615-68577634 Msa0370690:intron 30.0%
!! ACACACTTGTTATGGTTAAA+AGG - chr3_1:68577673-68577692 None:intergenic 30.0%
! ATCTTTTCTTTCTTGTTCAC+CGG - chr3_1:68577912-68577931 None:intergenic 30.0%
! AATTTAGTTTCGAAACAGCT+AGG + chr3_1:68578153-68578172 Msa0370690:intron 30.0%
TTAATTACCTGCTAAGTAGT+TGG + chr3_1:68578232-68578251 Msa0370690:intron 30.0%
TTATAAACCAACTACTTAGC+AGG - chr3_1:68578242-68578261 None:intergenic 30.0%
! AGTAGTTGGTTTATAACATG+TGG + chr3_1:68578246-68578265 Msa0370690:intron 30.0%
ATGTGGAAATATCCCTTAAT+AGG + chr3_1:68578263-68578282 Msa0370690:intron 30.0%
!!! AGAGCTGTTTCTTTTATATC+AGG + chr3_1:68578363-68578382 Msa0370690:intron 30.0%
AGTACACACAAGTAACTAAT+AGG - chr3_1:68578592-68578611 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG + chr3_1:68578692-68578711 Msa0370690:CDS 30.0%
GCAATAGTATCATGTTTACT+GGG + chr3_1:68578693-68578712 Msa0370690:CDS 30.0%
TGCAATGATGAAAATCTTAC+TGG - chr3_1:68578783-68578802 None:intergenic 30.0%
TAGTACTCCATATACTAGTT+AGG - chr3_1:68579027-68579046 None:intergenic 30.0%
CAAGACATTGGAAAAGTTAA+TGG + chr3_1:68579084-68579103 Msa0370690:intron 30.0%
AAGTGTATAGTAACAAAGAG+CGG + chr3_1:68579357-68579376 Msa0370690:CDS 30.0%
!!! TTAGTTTTTGGGATCGAATT+CGG + chr3_1:68579462-68579481 Msa0370690:intron 30.0%
CAAGAATGAAATCACATTGA+AGG - chr3_1:68579503-68579522 None:intergenic 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG + chr3_1:68579613-68579632 Msa0370690:CDS 30.0%
! TTTATATCGGTTGTGTAAAG+AGG + chr3_1:68579778-68579797 Msa0370690:three_prime_UTR 30.0%
TACTACTTATCTGCTTCCTA+TGG - chr3_1:68576875-68576894 None:intergenic 35.0%
TGGTATGCAAGGAAAAACTA+AGG + chr3_1:68576916-68576935 Msa0370690:exon 35.0%
TTTCAATGATACCTTCCAAG+AGG + chr3_1:68577246-68577265 Msa0370690:CDS 35.0%
! GAGAATCGTTGATTACATTG+AGG + chr3_1:68577418-68577437 Msa0370690:intron 35.0%
! AACAACAGACACACTTGTTA+TGG - chr3_1:68577681-68577700 None:intergenic 35.0%
TACGGTGAATTGCTCAAAAT+TGG + chr3_1:68577745-68577764 Msa0370690:CDS 35.0%
AAATTGGAGGTGGAAAAGAA+AGG + chr3_1:68577761-68577780 Msa0370690:CDS 35.0%
! ATTTATTGGGTGTCACCTAA+TGG + chr3_1:68578099-68578118 Msa0370690:intron 35.0%
AATCGAAAACTCAAGCCATT+AGG - chr3_1:68578117-68578136 None:intergenic 35.0%
TTTCCAACTACAGGGAAAAA+CGG + chr3_1:68578546-68578565 Msa0370690:intron 35.0%
CTGAAATCAACTCATGACTT+AGG - chr3_1:68578667-68578686 None:intergenic 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG + chr3_1:68578665-68578684 Msa0370690:intron 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG - chr3_1:68578767-68578786 None:intergenic 35.0%
GATGAAAATCTTACTGGATC+AGG - chr3_1:68578777-68578796 None:intergenic 35.0%
TCAGTATGGTATGATCTATG+TGG + chr3_1:68578908-68578927 Msa0370690:intron 35.0%
ACTATTATGAGATACCTCGA+AGG - chr3_1:68579000-68579019 None:intergenic 35.0%
AGTCATGCCTAACTAGTATA+TGG + chr3_1:68579017-68579036 Msa0370690:intron 35.0%
! TGTTATTTACAGATGTGTCG+TGG + chr3_1:68579287-68579306 Msa0370690:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG + chr3_1:68579358-68579377 Msa0370690:CDS 35.0%
CAGAGATGATAGTAAGTTAG+TGG + chr3_1:68579434-68579453 Msa0370690:intron 35.0%
!!! TAGTTTTTGGGATCGAATTC+GGG + chr3_1:68579463-68579482 Msa0370690:intron 35.0%
TGATCTCAAATGTATCATGC+AGG + chr3_1:68579521-68579540 Msa0370690:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG + chr3_1:68579574-68579593 Msa0370690:CDS 35.0%
TGACATATTGCTTCTCAAGA+AGG - chr3_1:68579642-68579661 None:intergenic 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - chr3_1:68579701-68579720 None:intergenic 35.0%
!! TCAATTCCTCATTTGTTGTC+AGG + chr3_1:68579720-68579739 Msa0370690:three_prime_UTR 35.0%
TTATCTGCTTCCTATGGAGT+GGG - chr3_1:68576869-68576888 None:intergenic 40.0%
!! GTGTGATGATTTGGTATGCA+AGG + chr3_1:68576905-68576924 Msa0370690:exon 40.0%
GCAAGGAAAAACTAAGGCAA+TGG + chr3_1:68576922-68576941 Msa0370690:CDS 40.0%
AAAAACTAAGGCAATGGCCA+TGG + chr3_1:68576928-68576947 Msa0370690:CDS 40.0%
! GATGCTATTTGTTGATGCCA+TGG - chr3_1:68576948-68576967 None:intergenic 40.0%
CAACAATGAAGCAGAGGAAA+TGG - chr3_1:68576975-68576994 None:intergenic 40.0%
TCGATTCAACAATGAAGCAG+AGG - chr3_1:68576981-68577000 None:intergenic 40.0%
! GATCCTTCTTGTTGTGCTTA+AGG - chr3_1:68577039-68577058 None:intergenic 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG - chr3_1:68577086-68577105 None:intergenic 40.0%
TATCAACTTCAACAGCCAGA+AGG + chr3_1:68577110-68577129 Msa0370690:CDS 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG - chr3_1:68577181-68577200 None:intergenic 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG - chr3_1:68577182-68577201 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG + chr3_1:68577184-68577203 Msa0370690:CDS 40.0%
TGAGTTGTGCAGAAAGAACT+AGG + chr3_1:68577700-68577719 Msa0370690:intron 40.0%
GGTGAATTGCTCAAAATTGG+AGG + chr3_1:68577748-68577767 Msa0370690:CDS 40.0%
GAATTGCTCAAAATTGGAGG+TGG + chr3_1:68577751-68577770 Msa0370690:CDS 40.0%
ACAGCGTACTTTAACAAGAC+AGG + chr3_1:68577866-68577885 Msa0370690:CDS 40.0%
TTTCTTTCTTGTTCACCGGT+CGG - chr3_1:68577908-68577927 None:intergenic 40.0%
GCGAAAGACAGAACTATTCA+TGG + chr3_1:68577952-68577971 Msa0370690:CDS 40.0%
TAACCAACTTTGCAACACCT+GGG - chr3_1:68578009-68578028 None:intergenic 40.0%
TATACATACCGCCTTCTCAT+TGG - chr3_1:68578497-68578516 None:intergenic 40.0%
GCGAAAATCCAGATATTTGC+AGG + chr3_1:68578729-68578748 Msa0370690:CDS 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG - chr3_1:68578766-68578785 None:intergenic 40.0%
TGTGTTATGCTCTTTGTGAC+AGG + chr3_1:68578936-68578955 Msa0370690:intron 40.0%
GCTTGCAGCTAGTATATAGA+TGG - chr3_1:68578962-68578981 None:intergenic 40.0%
CAATTCTACAGTTGCTGGAT+AGG - chr3_1:68579165-68579184 None:intergenic 40.0%
CCATACAATTCTACAGTTGC+TGG - chr3_1:68579170-68579189 None:intergenic 40.0%
CCAGCAACTGTAGAATTGTA+TGG + chr3_1:68579167-68579186 Msa0370690:intron 40.0%
AAATCAAATCTCTCCTCAGG+AGG - chr3_1:68579604-68579623 None:intergenic 40.0%
TCCTGAGGAGAGATTTGATT+TGG + chr3_1:68579603-68579622 Msa0370690:CDS 40.0%
CAATATGTCAGCTAGCAAAC+TGG + chr3_1:68579652-68579671 Msa0370690:exon 40.0%
CTTATCTGCTTCCTATGGAG+TGG - chr3_1:68576870-68576889 None:intergenic 45.0%
! CCTTCTTGTTGTGCTTAAGG+AGG - chr3_1:68577036-68577055 None:intergenic 45.0%
CCTCCTTAAGCACAACAAGA+AGG + chr3_1:68577033-68577052 Msa0370690:CDS 45.0%
! AAAAAGCATGAGGCACCTCT+TGG - chr3_1:68577264-68577283 None:intergenic 45.0%
AGAAAGAACTAGGCGTTACC+TGG + chr3_1:68577710-68577729 Msa0370690:intron 45.0%
GAAAGAACTAGGCGTTACCT+GGG + chr3_1:68577711-68577730 Msa0370690:intron 45.0%
CGTACTTTAACAAGACAGGC+TGG + chr3_1:68577870-68577889 Msa0370690:CDS 45.0%
GTAACCAACTTTGCAACACC+TGG - chr3_1:68578010-68578029 None:intergenic 45.0%
AACATACAGGCTTGTCGATC+AGG + chr3_1:68578432-68578451 Msa0370690:intron 45.0%
! GTCGATCAGGCTTTAACTCA+AGG + chr3_1:68578445-68578464 Msa0370690:CDS 45.0%
TTGCAGCACTTCCAATGAGA+AGG + chr3_1:68578483-68578502 Msa0370690:CDS 45.0%
TCATGACTTAGGTCCTGAGA+TGG - chr3_1:68578656-68578675 None:intergenic 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG - chr3_1:68578765-68578784 None:intergenic 45.0%
ATACTAGCTGCAAGCACTCT+CGG + chr3_1:68578967-68578986 Msa0370690:CDS 45.0%
GCCAAATCAAATCTCTCCTC+AGG - chr3_1:68579607-68579626 None:intergenic 45.0%
GGTAAGCCTGACAACAAATG+AGG - chr3_1:68579729-68579748 None:intergenic 45.0%
! TAGGTTGAGTTGCTCAGCCT+CGG + chr3_1:68577135-68577154 Msa0370690:CDS 50.0%
ACCTGGGACGTGGAATTGTA+CGG + chr3_1:68577727-68577746 Msa0370690:CDS 50.0%
CAGCACTTCCAATGAGAAGG+CGG + chr3_1:68578486-68578505 Msa0370690:CDS 50.0%
CCACGTCTCCTGCAAATATC+TGG - chr3_1:68578740-68578759 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG + chr3_1:68578737-68578756 Msa0370690:CDS 50.0%
TTACAGATGTGTCGTGGTCG+AGG + chr3_1:68579293-68579312 Msa0370690:intron 50.0%
TAGCAGCAGCTAAAGCAGCT+GGG + chr3_1:68579331-68579350 Msa0370690:CDS 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + chr3_1:68579588-68579607 Msa0370690:CDS 50.0%
! CTTCAACAGCCAGAAGGCGT+AGG + chr3_1:68577116-68577135 Msa0370690:CDS 55.0%
GCAACTCAACCTACGCCTTC+TGG - chr3_1:68577128-68577147 None:intergenic 55.0%
! AGCATGAGGCACCTCTTGGA+AGG - chr3_1:68577260-68577279 None:intergenic 55.0%
!! TACTGGCTCAACCACCAGAG+CGG + chr3_1:68577584-68577603 Msa0370690:intron 55.0%
ACCGTACAATTCCACGTCCC+AGG - chr3_1:68577731-68577750 None:intergenic 55.0%
AAACTGTTGCCTCTTCGCCC+AGG + chr3_1:68577989-68578008 Msa0370690:CDS 55.0%
TTTGCAACACCTGGGCGAAG+AGG - chr3_1:68578001-68578020 None:intergenic 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG + chr3_1:68578003-68578022 Msa0370690:intron 55.0%
!!! GGGCCGTTTTTCCCTGTAGT+TGG - chr3_1:68578552-68578571 None:intergenic 55.0%
! TGGATTTTCGCTGCTCGCTC+AGG - chr3_1:68578720-68578739 None:intergenic 55.0%
!! CTCTCGGTGTTGAACCTTCG+AGG + chr3_1:68578983-68579002 Msa0370690:CDS 55.0%
GTGGTCGAGGACAGTGCAAT+AGG + chr3_1:68579306-68579325 Msa0370690:CDS 55.0%
CTAGCAGCAGCTAAAGCAGC+TGG + chr3_1:68579330-68579349 Msa0370690:CDS 55.0%
GAGTTGCTCAGCCTCGGCTT+CGG + chr3_1:68577141-68577160 Msa0370690:CDS 60.0%
CGTAGAAGATGCCGAAGCCG+AGG - chr3_1:68577155-68577174 None:intergenic 60.0%
ACTAGGCGTTACCTGGGACG+TGG + chr3_1:68577717-68577736 Msa0370690:CDS 60.0%
!! TTTCCAAGGCGCCGCTCTGG+TGG - chr3_1:68577598-68577617 None:intergenic 65.0%
!! TCGTTTCCAAGGCGCCGCTC+TGG - chr3_1:68577601-68577620 None:intergenic 65.0%
! TGGCCTGCGAATGCACCGAC+CGG + chr3_1:68577890-68577909 Msa0370690:CDS 65.0%
TCACCGGTCGGTGCATTCGC+AGG - chr3_1:68577896-68577915 None:intergenic 65.0%
CAACCACCAGAGCGGCGCCT+TGG + chr3_1:68577592-68577611 Msa0370690:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68576866 68579948 68576866 ID=Msa0370690;Name=Msa0370690
chr3_1 mRNA 68576866 68579948 68576866 ID=Msa0370690-mRNA-1;Parent=Msa0370690;Name=Msa0370690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=54|1|1|1|0.87|0.77|9|252|330
chr3_1 exon 68576866 68577267 68576866 ID=Msa0370690-mRNA-1:exon:14379;Parent=Msa0370690-mRNA-1
chr3_1 exon 68577712 68577782 68577712 ID=Msa0370690-mRNA-1:exon:14380;Parent=Msa0370690-mRNA-1
chr3_1 exon 68577862 68578020 68577862 ID=Msa0370690-mRNA-1:exon:14381;Parent=Msa0370690-mRNA-1
chr3_1 exon 68578441 68578507 68578441 ID=Msa0370690-mRNA-1:exon:14382;Parent=Msa0370690-mRNA-1
chr3_1 exon 68578687 68578782 68578687 ID=Msa0370690-mRNA-1:exon:14383;Parent=Msa0370690-mRNA-1
chr3_1 exon 68578958 68579004 68578958 ID=Msa0370690-mRNA-1:exon:14384;Parent=Msa0370690-mRNA-1
chr3_1 exon 68579299 68579379 68579299 ID=Msa0370690-mRNA-1:exon:14385;Parent=Msa0370690-mRNA-1
chr3_1 exon 68579543 68579683 68579543 ID=Msa0370690-mRNA-1:exon:14386;Parent=Msa0370690-mRNA-1
chr3_1 exon 68579714 68579948 68579714 ID=Msa0370690-mRNA-1:exon:14387;Parent=Msa0370690-mRNA-1
chr3_1 five_prime_UTR 68576866 68576919 68576866 ID=Msa0370690-mRNA-1:five_prime_utr;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68576920 68577267 68576920 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68577712 68577782 68577712 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68577862 68578020 68577862 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68578441 68578507 68578441 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68578687 68578782 68578687 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68578958 68579004 68578958 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68579299 68579379 68579299 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 CDS 68579543 68579666 68579543 ID=Msa0370690-mRNA-1:cds;Parent=Msa0370690-mRNA-1
chr3_1 three_prime_UTR 68579667 68579683 68579667 ID=Msa0370690-mRNA-1:three_prime_utr;Parent=Msa0370690-mRNA-1
chr3_1 three_prime_UTR 68579714 68579948 68579714 ID=Msa0370690-mRNA-1:three_prime_utr;Parent=Msa0370690-mRNA-1
Gene Sequence

>Msa0370690

ATGCAAGGAAAAACTAAGGCAATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAGCCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATGTTTACTGGGACCTGAGCGAGCAGCGAAAATCCAGATATTTGCAGGAGACGTGGTTCCCCGAAAAAAGCCTGATCCAGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>Msa0370690

MQGKTKAMAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTARRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSCLLGPERAAKIQIFAGDVVPRKKPDPAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*