AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1032760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032760 MtrunA17_Chr7g0255141 99.752 403 1 0 1 403 1 403 0.0 833
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1032760 AT3G56940.1 85.366 410 52 4 1 403 1 409 0.0 694
Msa1032760 AT3G56940.2 91.867 332 27 0 72 403 1 332 0.0 642

Find 107 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGAACAAGGAGTTTA+AGG 0.155204 7_1:+67849725 Msa1032760:CDS
GCCATTTCTGCTGCCATAAT+TGG 0.175676 7_1:-67849405 None:intergenic
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7_1:+67850669 Msa1032760:CDS
TGTAGCATAGAAAATAAATT+TGG 0.215744 7_1:-67850649 None:intergenic
CTTCAAACTCATCTTCATTA+AGG 0.226003 7_1:-67849659 None:intergenic
CTAGGAATGTTGCTGAATTT+TGG 0.226018 7_1:-67849456 None:intergenic
TGTTAAACACATAAGTAAAT+TGG 0.252111 7_1:-67852166 None:intergenic
TATGATGAAACTGTTCTTCT+AGG 0.267498 7_1:-67849474 None:intergenic
ATAGGGATCAAAAGGAAATA+AGG 0.271260 7_1:-67851878 None:intergenic
TGTTTCTTAACTGTTGATTT+TGG 0.272384 7_1:+67852138 Msa1032760:three_prime_UTR
GGGTTTATCTGATTTCAATT+TGG 0.291421 7_1:+67850575 Msa1032760:CDS
TCCAACTTTCGCTTAAACTC+TGG 0.309477 7_1:-67851650 None:intergenic
TTGTTTGAGATGTCTGTAAA+TGG 0.309829 7_1:-67850709 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7_1:+67851766 Msa1032760:CDS
TCCAATTATGGCAGCAGAAA+TGG 0.336647 7_1:+67849404 Msa1032760:exon
ATGAGTTACTTATCAAGATA+TGG 0.341487 7_1:+67852051 Msa1032760:three_prime_UTR
CGCCAATAGCAAGAATCTTC+TGG 0.346835 7_1:-67851691 None:intergenic
TGTCAAAAGGGTTTCTTTGA+TGG 0.359839 7_1:-67849571 None:intergenic
TGAGTTTGAAGCTTTGCTTC+AGG 0.359858 7_1:+67849671 Msa1032760:CDS
AACCAGAAGATTCTTGCTAT+TGG 0.360172 7_1:+67851689 Msa1032760:CDS
TTCCTCACTCTTATTCCAAT+TGG 0.375642 7_1:+67852078 Msa1032760:three_prime_UTR
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7_1:+67851729 Msa1032760:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7_1:+67850587 Msa1032760:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7_1:+67851371 Msa1032760:CDS
TGGAGTAGCAGACATTCTTA+TGG 0.384160 7_1:-67849499 None:intergenic
TTAACGTTCAAAGATTTCAT+TGG 0.386192 7_1:+67849261 Msa1032760:five_prime_UTR
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7_1:-67850782 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7_1:+67849807 Msa1032760:CDS
TGTAGAATCTTGGTGTCAAA+AGG 0.394484 7_1:-67849584 None:intergenic
TGTTAATCTCAGTGTTGAAA+AGG 0.401359 7_1:-67849632 None:intergenic
AAATGGGATAACATTGGTAC+TGG 0.401704 7_1:-67850737 None:intergenic
AGATTTCCCCGAGTTTGAAC+GGG 0.402594 7_1:+67851826 Msa1032760:CDS
CTCAAGATGAACATTACAAT+AGG 0.405363 7_1:-67851896 None:intergenic
GTTTCTACTAGTGGTATGAT+TGG 0.414228 7_1:-67849108 None:intergenic
GTAGCATAGAAAATAAATTT+GGG 0.422678 7_1:-67850648 None:intergenic
TTTACTAGAGACCTTCCAAT+TGG 0.423545 7_1:-67852093 None:intergenic
GGAAAATCCTTGCAGTTGTT+CGG 0.423810 7_1:-67851604 None:intergenic
CCAACTTTCGCTTAAACTCT+GGG 0.428319 7_1:-67851649 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.433804 7_1:-67851626 None:intergenic
TCTACAGATCCTGACTCAAT+TGG 0.440826 7_1:-67851806 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7_1:+67850676 Msa1032760:CDS
TAGGGATCAAAAGGAAATAA+GGG 0.444234 7_1:-67851877 None:intergenic
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7_1:+67849845 Msa1032760:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7_1:+67850869 Msa1032760:CDS
TTCAATTTGGCATTGGACTT+GGG 0.448463 7_1:+67850588 Msa1032760:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7_1:+67850581 Msa1032760:CDS
AAATCAGTTGTGTAGAATCT+TGG 0.450494 7_1:-67849594 None:intergenic
GTTGATGTTGGTGTTGCTGT+TGG 0.457229 7_1:-67849519 None:intergenic
TTTCTTCTTTACAAAGAGCT+TGG 0.457238 7_1:+67849831 Msa1032760:CDS
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7_1:+67849747 Msa1032760:CDS
GATTCCACTGATTGCTGCCC+TGG 0.462886 7_1:+67851751 Msa1032760:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7_1:+67850775 Msa1032760:CDS
CAACGCACAGATTTCTATGA+AGG 0.466878 7_1:+67851365 Msa1032760:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7_1:-67850354 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7_1:+67851412 Msa1032760:CDS
TCAACAAAGATTTGTCTAAG+AGG 0.479934 7_1:-67849771 None:intergenic
CCCAGAGTTTAAGCGAAAGT+TGG 0.480762 7_1:+67851649 Msa1032760:CDS
TTCTTTACAAAGAGCTTGGA+AGG 0.481464 7_1:+67849835 Msa1032760:CDS
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7_1:-67851769 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.486460 7_1:+67850387 Msa1032760:CDS
GTTAATCTCAGTGTTGAAAA+GGG 0.488825 7_1:-67849631 None:intergenic
CTGATGAAACCAATTGAGTC+AGG 0.490154 7_1:+67851797 Msa1032760:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7_1:+67850832 Msa1032760:CDS
TCAAGATGAACATTACAATA+GGG 0.502698 7_1:-67851895 None:intergenic
ACATTACAATAGGGATCAAA+AGG 0.506113 7_1:-67851886 None:intergenic
TAGATTTCCCCGAGTTTGAA+CGG 0.510974 7_1:+67851825 Msa1032760:CDS
CAGTTAAGAAACAGTATTTG+AGG 0.512635 7_1:-67852128 None:intergenic
AACTTTGATGGGTTTGTGAA+GGG 0.513179 7_1:-67849376 None:intergenic
ACTAGTGGTATGATTGGTTG+TGG 0.519169 7_1:-67849102 None:intergenic
AGTTAAGAAACAGTATTTGA+GGG 0.521266 7_1:-67852127 None:intergenic
TCACTCTTATTCCAATTGGA+AGG 0.528421 7_1:+67852082 Msa1032760:three_prime_UTR
TTCCAGTCATTGAGAAATTG+TGG 0.544317 7_1:-67850834 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7_1:-67851673 None:intergenic
CTTCATAGAAATCTGTGCGT+TGG 0.549607 7_1:-67851364 None:intergenic
CAACAAAGATTTGTCTAAGA+GGG 0.554481 7_1:-67849770 None:intergenic
AAACTTTGATGGGTTTGTGA+AGG 0.557896 7_1:-67849377 None:intergenic
TAAGCGAAAGTTGGACCGGA+TGG 0.558726 7_1:+67851658 Msa1032760:CDS
TGGGATTCTTGACAAAGGCT+AGG 0.562165 7_1:+67850607 Msa1032760:CDS
AGTTTAAGCGAAAGTTGGAC+CGG 0.563653 7_1:+67851654 Msa1032760:CDS
GTAGAATCTTGGTGTCAAAA+GGG 0.566760 7_1:-67849583 None:intergenic
TGATGTCCAGGGATGAAGCT+AGG 0.568865 7_1:+67850379 Msa1032760:CDS
GGGATGAAGCTAGGCATGCA+GGG 0.570218 7_1:+67850388 Msa1032760:CDS
AATCTCAGCCACCACAGGGT+TGG 0.573147 7_1:-67850349 None:intergenic
TGCATGCCTAGCTTCATCCC+TGG 0.573968 7_1:-67850385 None:intergenic
AATGGGATAACATTGGTACT+GGG 0.579425 7_1:-67850736 None:intergenic
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7_1:-67851768 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7_1:+67850780 Msa1032760:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.604146 7_1:+67851827 Msa1032760:CDS
GCGAAAGTTGGACCGGATGG+TGG 0.607374 7_1:+67851661 Msa1032760:CDS
TCTTTGTTGAGTTTCTTGAG+AGG 0.612368 7_1:+67849784 Msa1032760:CDS
ACAATTTCTCAATGACTGGA+AGG 0.625428 7_1:+67850836 Msa1032760:CDS
GGACTTGGGATTCTTGACAA+AGG 0.631481 7_1:+67850602 Msa1032760:CDS
ATGTTGTTGATGAGAACTTG+TGG 0.632335 7_1:-67849072 None:intergenic
GACACCAGGGCAGCAATCAG+TGG 0.632610 7_1:-67851755 None:intergenic
ATGACTGGAAGGCGAAGTTG+TGG 0.637540 7_1:+67850847 Msa1032760:CDS
TTTACAAAGAGCTTGGAAGG+AGG 0.638627 7_1:+67849838 Msa1032760:CDS
TTCCAATTGGAATAAGAGTG+AGG 0.645835 7_1:-67852080 None:intergenic
TCTCAACATCAAGTACAGCT+GGG 0.645846 7_1:-67851625 None:intergenic
ATGGGATAACATTGGTACTG+GGG 0.655340 7_1:-67850735 None:intergenic
AACTAATAAGTATCTCACCA+TGG 0.657909 7_1:-67851961 None:intergenic
AGAAAATCTCAGCCACCACA+GGG 0.658199 7_1:-67850353 None:intergenic
CAGTGTGGAAACATTTACCA+TGG 0.671408 7_1:+67851944 Msa1032760:three_prime_UTR
AGACAAACCGAACAACTGCA+AGG 0.671868 7_1:+67851597 Msa1032760:intron
GCAGAAAACCAACCCTGTGG+TGG 0.689928 7_1:+67850341 Msa1032760:intron
ACTGCTGCCACAAAACAGTG+TGG 0.736003 7_1:+67851929 Msa1032760:three_prime_UTR
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7_1:+67851828 Msa1032760:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.816011 7_1:+67850338 Msa1032760:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATTAATAATTCC+AGG + chr7_1:67850045-67850064 Msa1032760:intron 15.0%
!! TTGAAATATTAATAATTCCA+GGG + chr7_1:67850046-67850065 Msa1032760:intron 15.0%
!! AAAAGAATATACATTAGTTA+CGG + chr7_1:67850487-67850506 Msa1032760:intron 15.0%
!!! TTTCATATTTATATTTTGCT+AGG + chr7_1:67852196-67852215 Msa1032760:three_prime_UTR 15.0%
!! ATATCATAAATTTAGCAACT+TGG + chr7_1:67849936-67849955 Msa1032760:intron 20.0%
!!! AAGCTTATGAATTTTGAAAT+AGG + chr7_1:67849965-67849984 Msa1032760:intron 20.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7_1:67849997-67850016 Msa1032760:intron 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7_1:67849998-67850017 Msa1032760:intron 20.0%
!! TTAATATTTCAAAATAACCC+TGG - chr7_1:67850038-67850057 None:intergenic 20.0%
!!! ATTTTGGTTTTATGACATTT+TGG + chr7_1:67850206-67850225 Msa1032760:intron 20.0%
!!! TTTTTCTTGTTTTCTATTCA+TGG + chr7_1:67850290-67850309 Msa1032760:intron 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7_1:67850651-67850670 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7_1:67850652-67850671 None:intergenic 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7_1:67850756-67850775 None:intergenic 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7_1:67850932-67850951 None:intergenic 20.0%
!!! TGATAACTATGTTTTAAGTA+GGG - chr7_1:67851301-67851320 None:intergenic 20.0%
!!! TTGATAACTATGTTTTAAGT+AGG - chr7_1:67851302-67851321 None:intergenic 20.0%
!! CTTATCATAAGTGTTAATAA+CGG - chr7_1:67851496-67851515 None:intergenic 20.0%
!! AGTTGATTAACTAAGAATAA+AGG + chr7_1:67851520-67851539 Msa1032760:intron 20.0%
!! TGTTAAACACATAAGTAAAT+TGG - chr7_1:67852169-67852188 None:intergenic 20.0%
! TTAACGTTCAAAGATTTCAT+TGG + chr7_1:67849261-67849280 Msa1032760:five_prime_UTR 25.0%
!!! TTTGGTGTGAATTTTGAAAT+TGG - chr7_1:67849441-67849460 None:intergenic 25.0%
!! ACAATCAAACTCATTTTGTT+AGG + chr7_1:67849709-67849728 Msa1032760:CDS 25.0%
! GCTAAATTGAATGTTGAATA+AGG - chr7_1:67849900-67849919 None:intergenic 25.0%
!!! TGTTCTTTTGATTTATATGC+AGG + chr7_1:67850541-67850560 Msa1032760:intron 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7_1:67850554-67850573 Msa1032760:intron 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7_1:67850555-67850574 Msa1032760:intron 25.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7_1:67850669-67850688 Msa1032760:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7_1:67850746-67850765 None:intergenic 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7_1:67850757-67850776 None:intergenic 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7_1:67850757-67850776 Msa1032760:CDS 25.0%
! TGTTAAGTATTATGTAACTC+AGG - chr7_1:67850979-67850998 None:intergenic 25.0%
!! CATTAATTTGACAGAGATTA+TGG - chr7_1:67851460-67851479 None:intergenic 25.0%
! CATAATCTCTGTCAAATTAA+TGG + chr7_1:67851458-67851477 Msa1032760:intron 25.0%
! TCAAGATGAACATTACAATA+GGG - chr7_1:67851898-67851917 None:intergenic 25.0%
! ATGAGTTACTTATCAAGATA+TGG + chr7_1:67852051-67852070 Msa1032760:three_prime_UTR 25.0%
! AGTTAAGAAACAGTATTTGA+GGG - chr7_1:67852130-67852149 None:intergenic 25.0%
!!! TGTTTCTTAACTGTTGATTT+TGG + chr7_1:67852138-67852157 Msa1032760:three_prime_UTR 25.0%
! TTGTTGTATGTTTCTACTAG+TGG - chr7_1:67849120-67849139 None:intergenic 30.0%
ATTGGAGCAAAAACTTTGAT+GGG - chr7_1:67849390-67849409 None:intergenic 30.0%
AATTGGAGCAAAAACTTTGA+TGG - chr7_1:67849391-67849410 None:intergenic 30.0%
! CAAAGTTTTTGCTCCAATTA+TGG + chr7_1:67849392-67849411 Msa1032760:exon 30.0%
TATGATGAAACTGTTCTTCT+AGG - chr7_1:67849477-67849496 None:intergenic 30.0%
AAATCAGTTGTGTAGAATCT+TGG - chr7_1:67849597-67849616 None:intergenic 30.0%
!! CACAACTGATTTTGATGAAA+TGG + chr7_1:67849605-67849624 Msa1032760:CDS 30.0%
! GTTAATCTCAGTGTTGAAAA+GGG - chr7_1:67849634-67849653 None:intergenic 30.0%
! TGTTAATCTCAGTGTTGAAA+AGG - chr7_1:67849635-67849654 None:intergenic 30.0%
CTTCAAACTCATCTTCATTA+AGG - chr7_1:67849662-67849681 None:intergenic 30.0%
! AACTCATTTTGTTAGGAACA+AGG + chr7_1:67849716-67849735 Msa1032760:CDS 30.0%
CAACAAAGATTTGTCTAAGA+GGG - chr7_1:67849773-67849792 None:intergenic 30.0%
TCAACAAAGATTTGTCTAAG+AGG - chr7_1:67849774-67849793 None:intergenic 30.0%
TTTCTTCTTTACAAAGAGCT+TGG + chr7_1:67849831-67849850 Msa1032760:CDS 30.0%
! AACTCTTAGTACTAGGATTT+TGG + chr7_1:67850190-67850209 Msa1032760:intron 30.0%
ATATTGCATGGGATTTGATA+TGG + chr7_1:67850319-67850338 Msa1032760:intron 30.0%
CTAGACATATAGACAAGTAA+AGG - chr7_1:67850431-67850450 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7_1:67850575-67850594 Msa1032760:CDS 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7_1:67850581-67850600 Msa1032760:CDS 30.0%
! TTGTTTGAGATGTCTGTAAA+TGG - chr7_1:67850712-67850731 None:intergenic 30.0%
GTAAATCTAATTCTGCATGT+TGG - chr7_1:67851194-67851213 None:intergenic 30.0%
ATGCAGAATTAGATTTACCT+TGG + chr7_1:67851196-67851215 Msa1032760:intron 30.0%
TAATGACCACAAACTCATAA+TGG - chr7_1:67851267-67851286 None:intergenic 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7_1:67851313-67851332 Msa1032760:intron 30.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7_1:67851371-67851390 Msa1032760:CDS 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7_1:67851564-67851583 Msa1032760:intron 30.0%
TAGGGATCAAAAGGAAATAA+GGG - chr7_1:67851880-67851899 None:intergenic 30.0%
ATAGGGATCAAAAGGAAATA+AGG - chr7_1:67851881-67851900 None:intergenic 30.0%
ACATTACAATAGGGATCAAA+AGG - chr7_1:67851889-67851908 None:intergenic 30.0%
CTCAAGATGAACATTACAAT+AGG - chr7_1:67851899-67851918 None:intergenic 30.0%
AACTAATAAGTATCTCACCA+TGG - chr7_1:67851964-67851983 None:intergenic 30.0%
CAGTTAAGAAACAGTATTTG+AGG - chr7_1:67852131-67852150 None:intergenic 30.0%
! TTTATATTTTGCTAGGCAGA+TGG + chr7_1:67852203-67852222 Msa1032760:three_prime_UTR 30.0%
! TGGCTTTCTTTTGCTCTTAT+TGG - chr7_1:67849055-67849074 None:intergenic 35.0%
! ATGTTGTTGATGAGAACTTG+TGG - chr7_1:67849075-67849094 None:intergenic 35.0%
GTTTCTACTAGTGGTATGAT+TGG - chr7_1:67849111-67849130 None:intergenic 35.0%
!! AACTTTGATGGGTTTGTGAA+GGG - chr7_1:67849379-67849398 None:intergenic 35.0%
!! AAACTTTGATGGGTTTGTGA+AGG - chr7_1:67849380-67849399 None:intergenic 35.0%
! CTAGGAATGTTGCTGAATTT+TGG - chr7_1:67849459-67849478 None:intergenic 35.0%
!!! TTGCTTGGTTTTGTTGATGT+TGG - chr7_1:67849534-67849553 None:intergenic 35.0%
!!! GTTTTGTTTGGTTTCTTGCT+TGG - chr7_1:67849549-67849568 None:intergenic 35.0%
!!! TCTTTGATGGCAGTTTTGTT+TGG - chr7_1:67849561-67849580 None:intergenic 35.0%
TGTCAAAAGGGTTTCTTTGA+TGG - chr7_1:67849574-67849593 None:intergenic 35.0%
!! GTAGAATCTTGGTGTCAAAA+GGG - chr7_1:67849586-67849605 None:intergenic 35.0%
!! TGTAGAATCTTGGTGTCAAA+AGG - chr7_1:67849587-67849606 None:intergenic 35.0%
TGTTAGGAACAAGGAGTTTA+AGG + chr7_1:67849725-67849744 Msa1032760:CDS 35.0%
TCTTTGTTGAGTTTCTTGAG+AGG + chr7_1:67849784-67849803 Msa1032760:CDS 35.0%
TTCTTTACAAAGAGCTTGGA+AGG + chr7_1:67849835-67849854 Msa1032760:CDS 35.0%
TGATTGCAACTCTTAGTACT+AGG + chr7_1:67850183-67850202 Msa1032760:intron 35.0%
TCATGGTCTGATATATTGCA+TGG + chr7_1:67850307-67850326 Msa1032760:intron 35.0%
CATGGTCTGATATATTGCAT+GGG + chr7_1:67850308-67850327 Msa1032760:intron 35.0%
! TATAGACAAGTAAAGGCACA+AGG - chr7_1:67850424-67850443 None:intergenic 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7_1:67850587-67850606 Msa1032760:CDS 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7_1:67850588-67850607 Msa1032760:CDS 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7_1:67850676-67850695 Msa1032760:CDS 35.0%
AATGGGATAACATTGGTACT+GGG - chr7_1:67850739-67850758 None:intergenic 35.0%
AAATGGGATAACATTGGTAC+TGG - chr7_1:67850740-67850759 None:intergenic 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7_1:67850837-67850856 None:intergenic 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7_1:67850836-67850855 Msa1032760:CDS 35.0%
ATTCAATAGCTAGTTCCGAT+TGG + chr7_1:67850951-67850970 Msa1032760:intron 35.0%
TCATATAGATGTCAGACACT+TGG - chr7_1:67851068-67851087 None:intergenic 35.0%
CAAGAAAAAAGCGATCTCTT+TGG - chr7_1:67851240-67851259 None:intergenic 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7_1:67851258-67851277 Msa1032760:intron 35.0%
TGACATGCATGTCATAATTG+AGG + chr7_1:67851412-67851431 Msa1032760:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7_1:67851563-67851582 Msa1032760:intron 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7_1:67851689-67851708 Msa1032760:CDS 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7_1:67851729-67851748 Msa1032760:CDS 35.0%
! AATGTTTCCACACTGTTTTG+TGG - chr7_1:67851939-67851958 None:intergenic 35.0%
TTCCTCACTCTTATTCCAAT+TGG + chr7_1:67852078-67852097 Msa1032760:three_prime_UTR 35.0%
TTCCAATTGGAATAAGAGTG+AGG - chr7_1:67852083-67852102 None:intergenic 35.0%
TCACTCTTATTCCAATTGGA+AGG + chr7_1:67852082-67852101 Msa1032760:three_prime_UTR 35.0%
TTTACTAGAGACCTTCCAAT+TGG - chr7_1:67852096-67852115 None:intergenic 35.0%
! ACTAGTGGTATGATTGGTTG+TGG - chr7_1:67849105-67849124 None:intergenic 40.0%
GTTAACTGAAACATGACACG+TGG - chr7_1:67849246-67849265 None:intergenic 40.0%
TCCAATTATGGCAGCAGAAA+TGG + chr7_1:67849404-67849423 Msa1032760:exon 40.0%
TGGAGTAGCAGACATTCTTA+TGG - chr7_1:67849502-67849521 None:intergenic 40.0%
! TGAGTTTGAAGCTTTGCTTC+AGG + chr7_1:67849671-67849690 Msa1032760:CDS 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7_1:67849747-67849766 Msa1032760:CDS 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7_1:67849807-67849826 Msa1032760:CDS 40.0%
TTTACAAAGAGCTTGGAAGG+AGG + chr7_1:67849838-67849857 Msa1032760:CDS 40.0%
!! AGGGTTATTTTGCAATTGCC+AGG + chr7_1:67850017-67850036 Msa1032760:intron 40.0%
!! GGGTTATTTTGCAATTGCCA+GGG + chr7_1:67850018-67850037 Msa1032760:intron 40.0%
! AGATTTTCTCTCTGATGTCC+AGG + chr7_1:67850367-67850386 Msa1032760:CDS 40.0%
! GATTTTCTCTCTGATGTCCA+GGG + chr7_1:67850368-67850387 Msa1032760:CDS 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7_1:67850452-67850471 Msa1032760:intron 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7_1:67850453-67850472 Msa1032760:intron 40.0%
ATGGGATAACATTGGTACTG+GGG - chr7_1:67850738-67850757 None:intergenic 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7_1:67850832-67850851 Msa1032760:CDS 40.0%
TATGTAACTCAGGCACCAAT+CGG - chr7_1:67850969-67850988 None:intergenic 40.0%
TCGATGTGCATTCTCAGTTA+AGG - chr7_1:67851004-67851023 None:intergenic 40.0%
TTAACTGAGAATGCACATCG+AGG + chr7_1:67851003-67851022 Msa1032760:intron 40.0%
CTATATGACACTGACATGTG+TGG + chr7_1:67851080-67851099 Msa1032760:intron 40.0%
!! TGTGTCTGTGTTGTTTGTGT+CGG + chr7_1:67851145-67851164 Msa1032760:intron 40.0%
AAAAAAGCGATCTCTTTGGC+TGG - chr7_1:67851236-67851255 None:intergenic 40.0%
CTTCATAGAAATCTGTGCGT+TGG - chr7_1:67851367-67851386 None:intergenic 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7_1:67851365-67851384 Msa1032760:CDS 40.0%
GGAAAATCCTTGCAGTTGTT+CGG - chr7_1:67851607-67851626 None:intergenic 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7_1:67851628-67851647 None:intergenic 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7_1:67851629-67851648 None:intergenic 40.0%
CCAACTTTCGCTTAAACTCT+GGG - chr7_1:67851652-67851671 None:intergenic 40.0%
TCCAACTTTCGCTTAAACTC+TGG - chr7_1:67851653-67851672 None:intergenic 40.0%
AGTTTAAGCGAAAGTTGGAC+CGG + chr7_1:67851654-67851673 Msa1032760:CDS 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7_1:67851797-67851816 Msa1032760:CDS 40.0%
TCTACAGATCCTGACTCAAT+TGG - chr7_1:67851809-67851828 None:intergenic 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7_1:67851825-67851844 Msa1032760:CDS 40.0%
CAGTGTGGAAACATTTACCA+TGG + chr7_1:67851944-67851963 Msa1032760:three_prime_UTR 40.0%
GCCATTTCTGCTGCCATAAT+TGG - chr7_1:67849408-67849427 None:intergenic 45.0%
!! GTTGATGTTGGTGTTGCTGT+TGG - chr7_1:67849522-67849541 None:intergenic 45.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7_1:67849850-67849869 Msa1032760:intron 45.0%
GATGTTGTCAATTCAGTCCC+TGG - chr7_1:67850066-67850085 None:intergenic 45.0%
AGAAAATCTCAGCCACCACA+GGG - chr7_1:67850356-67850375 None:intergenic 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7_1:67850454-67850473 Msa1032760:intron 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7_1:67850602-67850621 Msa1032760:CDS 45.0%
TGGGATTCTTGACAAAGGCT+AGG + chr7_1:67850607-67850626 Msa1032760:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7_1:67850869-67850888 Msa1032760:CDS 45.0%
ATGCCTTCAACCTGAAGTGT+CGG - chr7_1:67851044-67851063 None:intergenic 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7_1:67851216-67851235 None:intergenic 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7_1:67851226-67851245 None:intergenic 45.0%
AGACAAACCGAACAACTGCA+AGG + chr7_1:67851597-67851616 Msa1032760:intron 45.0%
CCCAGAGTTTAAGCGAAAGT+TGG + chr7_1:67851649-67851668 Msa1032760:CDS 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7_1:67851676-67851695 None:intergenic 45.0%
CGCCAATAGCAAGAATCTTC+TGG - chr7_1:67851694-67851713 None:intergenic 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7_1:67851826-67851845 Msa1032760:CDS 45.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7_1:67849845-67849864 Msa1032760:CDS 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7_1:67850338-67850357 Msa1032760:intron 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7_1:67850357-67850376 None:intergenic 50.0%
TGATGTCCAGGGATGAAGCT+AGG + chr7_1:67850379-67850398 Msa1032760:CDS 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7_1:67850775-67850794 Msa1032760:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7_1:67850780-67850799 Msa1032760:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7_1:67850785-67850804 None:intergenic 50.0%
ATGACTGGAAGGCGAAGTTG+TGG + chr7_1:67850847-67850866 Msa1032760:CDS 50.0%
!! CTATGTAGCACCGACACTTC+AGG + chr7_1:67851031-67851050 Msa1032760:intron 50.0%
TAAGCGAAAGTTGGACCGGA+TGG + chr7_1:67851658-67851677 Msa1032760:CDS 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7_1:67851827-67851846 Msa1032760:CDS 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7_1:67851828-67851847 Msa1032760:CDS 50.0%
ACTGCTGCCACAAAACAGTG+TGG + chr7_1:67851929-67851948 Msa1032760:three_prime_UTR 50.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7_1:67850341-67850360 Msa1032760:intron 55.0%
AATCTCAGCCACCACAGGGT+TGG - chr7_1:67850352-67850371 None:intergenic 55.0%
TGCATGCCTAGCTTCATCCC+TGG - chr7_1:67850388-67850407 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7_1:67850387-67850406 Msa1032760:CDS 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7_1:67850388-67850407 Msa1032760:CDS 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7_1:67850393-67850412 Msa1032760:intron 55.0%
!! GCACCGACACTTCAGGTTGA+AGG + chr7_1:67851038-67851057 Msa1032760:intron 55.0%
! GATTCCACTGATTGCTGCCC+TGG + chr7_1:67851751-67851770 Msa1032760:CDS 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7_1:67851771-67851790 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7_1:67851836-67851855 None:intergenic 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7_1:67851837-67851856 None:intergenic 55.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7_1:67851661-67851680 Msa1032760:CDS 60.0%
GACACCAGGGCAGCAATCAG+TGG - chr7_1:67851758-67851777 None:intergenic 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7_1:67851766-67851785 Msa1032760:CDS 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7_1:67851772-67851791 None:intergenic 60.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7_1:67851835-67851854 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 67849031 67852227 67849031 ID=Msa1032760;Name=Msa1032760
chr7_1 mRNA 67849031 67852227 67849031 ID=Msa1032760-mRNA-1;Parent=Msa1032760;Name=Msa1032760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=280|1|1|1|0.8|0.66|6|365|403
chr7_1 exon 67849031 67849140 67849031 ID=Msa1032760-mRNA-1:exon:15617;Parent=Msa1032760-mRNA-1
chr7_1 exon 67849241 67849866 67849241 ID=Msa1032760-mRNA-1:exon:15618;Parent=Msa1032760-mRNA-1
chr7_1 exon 67850345 67850409 67850345 ID=Msa1032760-mRNA-1:exon:15619;Parent=Msa1032760-mRNA-1
chr7_1 exon 67850563 67850890 67850563 ID=Msa1032760-mRNA-1:exon:15620;Parent=Msa1032760-mRNA-1
chr7_1 exon 67851335 67851433 67851335 ID=Msa1032760-mRNA-1:exon:15621;Parent=Msa1032760-mRNA-1
chr7_1 exon 67851599 67852227 67851599 ID=Msa1032760-mRNA-1:exon:15622;Parent=Msa1032760-mRNA-1
chr7_1 five_prime_UTR 67849031 67849140 67849031 ID=Msa1032760-mRNA-1:five_prime_utr;Parent=Msa1032760-mRNA-1
chr7_1 five_prime_UTR 67849241 67849410 67849241 ID=Msa1032760-mRNA-1:five_prime_utr;Parent=Msa1032760-mRNA-1
chr7_1 CDS 67849411 67849866 67849411 ID=Msa1032760-mRNA-1:cds;Parent=Msa1032760-mRNA-1
chr7_1 CDS 67850345 67850409 67850345 ID=Msa1032760-mRNA-1:cds;Parent=Msa1032760-mRNA-1
chr7_1 CDS 67850563 67850890 67850563 ID=Msa1032760-mRNA-1:cds;Parent=Msa1032760-mRNA-1
chr7_1 CDS 67851335 67851433 67851335 ID=Msa1032760-mRNA-1:cds;Parent=Msa1032760-mRNA-1
chr7_1 CDS 67851599 67851862 67851599 ID=Msa1032760-mRNA-1:cds;Parent=Msa1032760-mRNA-1
chr7_1 three_prime_UTR 67851863 67852227 67851863 ID=Msa1032760-mRNA-1:three_prime_utr;Parent=Msa1032760-mRNA-1
Gene Sequence

>Msa1032760

ATGGCAGCAGAAATGGCTCTTGTGAAACCAATTTCAAAATTCACACCAAAATTCAGCAACATTCCTAGAAGAACAGTTTCATCATATTCCATAAGAATGTCTGCTACTCCAACAGCAACACCAACATCAACAAAACCAAGCAAGAAACCAAACAAAACTGCCATCAAAGAAACCCTTTTGACACCAAGATTCTACACAACTGATTTTGATGAAATGGAGACCCTTTTCAACACTGAGATTAACAAGAACCTTAATGAAGATGAGTTTGAAGCTTTGCTTCAGGAATTCAAAACTGATTACAATCAAACTCATTTTGTTAGGAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAAATCTTTGTTGAGTTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTTTACAAAGAGCTTGGAAGGAGGCTTAAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCTAGGCATGCAGGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGGAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATTTACAGACATCTCAAACAAAATCCCCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCGAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTTTATGTCACTATGTATCTGAATGATTGCCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGACAAACCGAACAACTGCAAGGATTTTCCCAGCTGTACTTGATGTTGAGAACCCAGAGTTTAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGCGAGACTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCTGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTGA

Protein sequence

>Msa1032760

MAAEMALVKPISKFTPKFSNIPRRTVSSYSIRMSATPTATPTSTKPSKKPNKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNEDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGETDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY*